Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057010 | sp|Q9FUD3|BZIP9_ARATH | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.67e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057010 | G7I545 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0057010 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008480 | Msa0057010 | 0.895162 | 1.245733e-75 | -8.615850e-47 |
| Msa0056930 | Msa0057010 | 0.908538 | 1.532088e-81 | -8.615850e-47 |
| Msa0057010 | Msa0746230 | 0.800584 | 1.345681e-48 | -8.615850e-47 |
| Msa0057010 | Msa1207790 | 0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0057010 | Msa1207800 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0057010 | Msa1306270 | 0.972973 | 1.196931e-135 | -8.615850e-47 |
| Msa0057010 | Msa1329130 | 0.830579 | 2.712310e-55 | -8.615850e-47 |
| Msa0057010 | Msa1329210 | 0.821307 | 4.328633e-53 | -8.615850e-47 |
| Msa0057010 | Msa1360490 | 0.801361 | 9.335975e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057010 | MtrunA17_Chr1g0147491 | 96.165 | 339 | 10 | 2 | 1 | 337 | 1 | 338 | 0.0 | 662 |
| Msa0057010 | MtrunA17_Chr3g0139301 | 63.177 | 277 | 75 | 13 | 71 | 337 | 35 | 294 | 1.56e-97 | 290 |
| Msa0057010 | MtrunA17_Chr1g0190761 | 58.065 | 124 | 48 | 2 | 139 | 258 | 177 | 300 | 6.82e-27 | 109 |
| Msa0057010 | MtrunA17_Chr3g0139571 | 78.378 | 74 | 16 | 0 | 169 | 242 | 1 | 74 | 1.48e-26 | 100 |
| Msa0057010 | MtrunA17_Chr7g0274141 | 52.381 | 147 | 54 | 4 | 117 | 258 | 150 | 285 | 1.24e-25 | 105 |
| Msa0057010 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 96 | 2 | 142 | 299 | 3 | 145 | 7.52e-12 | 62.8 |
| Msa0057010 | MtrunA17_Chr3g0144941 | 41.558 | 77 | 45 | 0 | 167 | 243 | 27 | 103 | 8.77e-12 | 62.4 |
| Msa0057010 | MtrunA17_Chr8g0378901 | 35.294 | 85 | 55 | 0 | 165 | 249 | 30 | 114 | 2.94e-11 | 61.2 |
| Msa0057010 | MtrunA17_Chr8g0341311 | 43.478 | 92 | 47 | 1 | 151 | 242 | 60 | 146 | 4.50e-11 | 61.2 |
| Msa0057010 | MtrunA17_Chr6g0456061 | 40.385 | 104 | 56 | 3 | 155 | 257 | 77 | 175 | 5.46e-11 | 61.2 |
| Msa0057010 | MtrunA17_Chr7g0225661 | 43.478 | 92 | 47 | 1 | 151 | 242 | 70 | 156 | 5.67e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057010 | AT5G24800.1 | 50.427 | 234 | 89 | 6 | 112 | 337 | 62 | 276 | 2.72e-60 | 195 |
| Msa0057010 | AT5G28770.1 | 58.333 | 108 | 43 | 1 | 154 | 259 | 130 | 237 | 2.32e-24 | 101 |
| Msa0057010 | AT5G28770.2 | 58.333 | 108 | 43 | 1 | 154 | 259 | 137 | 244 | 2.52e-24 | 101 |
| Msa0057010 | AT5G28770.3 | 61.111 | 90 | 35 | 0 | 154 | 243 | 137 | 226 | 2.05e-20 | 89.4 |
| Msa0057010 | AT4G02640.4 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.31e-15 | 77.8 |
| Msa0057010 | AT4G02640.3 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.38e-15 | 77.8 |
| Msa0057010 | AT4G02640.2 | 53.097 | 113 | 51 | 1 | 143 | 253 | 194 | 306 | 1.44e-15 | 77.4 |
| Msa0057010 | AT4G02640.1 | 53.097 | 113 | 51 | 1 | 143 | 253 | 188 | 300 | 1.62e-15 | 77.4 |
| Msa0057010 | AT3G54620.1 | 51.136 | 88 | 43 | 0 | 166 | 253 | 227 | 314 | 4.26e-13 | 70.1 |
| Msa0057010 | AT1G75390.1 | 39.759 | 83 | 50 | 0 | 167 | 249 | 38 | 120 | 9.49e-12 | 63.2 |
| Msa0057010 | AT2G18160.1 | 36.190 | 105 | 57 | 1 | 145 | 249 | 16 | 110 | 1.42e-11 | 62.8 |
| Msa0057010 | AT3G30530.1 | 39.773 | 88 | 53 | 0 | 155 | 242 | 66 | 153 | 6.86e-11 | 60.8 |
Find 91 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 1_2:-12873502 | None:intergenic |
| TGTTCAATTGACTCTGATTT+TGG | 0.206784 | 1_2:-12875962 | None:intergenic |
| AGTATTACCGGTGGCATAAA+TGG | 0.282549 | 1_2:-12873558 | None:intergenic |
| GGCAGAATGGTGCTCCATTT+TGG | 0.285783 | 1_2:-12870739 | None:intergenic |
| GTCATCGAAGCTGGAGAATA+TGG | 0.297219 | 1_2:-12870770 | None:intergenic |
| CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 1_2:-12875488 | None:intergenic |
| TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 1_2:+12875309 | Msa0057010:CDS |
| CCTGCGAAATGGAACCAAAA+TGG | 0.330729 | 1_2:+12870725 | Msa0057010:exon |
| CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 1_2:-12874524 | None:intergenic |
| TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 1_2:-12873516 | None:intergenic |
| GCTGCTTCGTGCCTATAAAT+AGG | 0.344163 | 1_2:-12870648 | None:intergenic |
| ATTGCTGTTTCGACGGTAAC+AGG | 0.344873 | 1_2:-12870841 | None:intergenic |
| TGAGCTCTTTGACTAGCTTA+TGG | 0.345147 | 1_2:+12876165 | Msa0057010:CDS |
| GTGATGGTGTATAATGTATA+TGG | 0.354804 | 1_2:+12876416 | Msa0057010:three_prime_UTR |
| AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 1_2:+12875291 | Msa0057010:CDS |
| AGAGAGAAAAGAAAAGGAAA+AGG | 0.360509 | 1_2:-12870682 | None:intergenic |
| TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 1_2:-12874435 | None:intergenic |
| ACAAACTTGGATATTCTAAC+TGG | 0.384901 | 1_2:-12876224 | None:intergenic |
| GGTGAAGTTAGCAGAGGATA+TGG | 0.388906 | 1_2:+12875899 | Msa0057010:intron |
| AACTTTATATATATACTTAG+TGG | 0.406476 | 1_2:+12876314 | Msa0057010:three_prime_UTR |
| CAGAATTCAGCTATTGGACT+TGG | 0.407633 | 1_2:+12876086 | Msa0057010:CDS |
| AGTGGACAGAATTCAGCTAT+TGG | 0.421178 | 1_2:+12876080 | Msa0057010:CDS |
| CCAGCTTCGATGACCTCAAA+TGG | 0.421645 | 1_2:+12870779 | Msa0057010:CDS |
| CTGGAGAATATGGAGGTTGC+TGG | 0.422279 | 1_2:-12870760 | None:intergenic |
| TTTCCATGGACGGTGATTGT+AGG | 0.427364 | 1_2:-12876038 | None:intergenic |
| CATGGAAACGACGCTTCATA+TGG | 0.432634 | 1_2:+12876053 | Msa0057010:CDS |
| GTCTATTGACATTGGAATCA+TGG | 0.432876 | 1_2:+12876469 | Msa0057010:three_prime_UTR |
| CAAACAAGAGTATTATTTGT+TGG | 0.433570 | 1_2:-12873476 | None:intergenic |
| CACTAGTAATCTCCGTTGTA+TGG | 0.434010 | 1_2:+12876004 | Msa0057010:CDS |
| GAGAGAAAAGAAAAGGAAAA+GGG | 0.436301 | 1_2:-12870681 | None:intergenic |
| TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 1_2:-12875515 | None:intergenic |
| TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 1_2:+12874528 | Msa0057010:CDS |
| CCATTTGAGGTCATCGAAGC+TGG | 0.443299 | 1_2:-12870779 | None:intergenic |
| TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 1_2:+12875455 | Msa0057010:intron |
| CATATGAAGCGTCGTTTCCA+TGG | 0.454343 | 1_2:-12876052 | None:intergenic |
| AAGAGGAGAGAGAAAAGAAA+AGG | 0.459569 | 1_2:-12870688 | None:intergenic |
| GACGCTTCATATGGTGTTAG+TGG | 0.460901 | 1_2:+12876062 | Msa0057010:CDS |
| ACATCGCCGACACCGATGAA+TGG | 0.462932 | 1_2:-12870898 | None:intergenic |
| ATTCTGCTGTGATCCATTTG+AGG | 0.470171 | 1_2:-12870792 | None:intergenic |
| AGCAGAGGATATGGTCTCTA+GGG | 0.483549 | 1_2:+12875908 | Msa0057010:CDS |
| GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 1_2:-12873515 | None:intergenic |
| TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 1_2:-12873508 | None:intergenic |
| AGATTACTAGTGTTGATTTG+TGG | 0.491316 | 1_2:-12875993 | None:intergenic |
| TTAGTGGTGTATGTATCAAA+TGG | 0.494849 | 1_2:+12876330 | Msa0057010:three_prime_UTR |
| ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 1_2:-12870947 | None:intergenic |
| TAGCAGAGGATATGGTCTCT+AGG | 0.512033 | 1_2:+12875907 | Msa0057010:CDS |
| CGATGTAAAACCGTGTAAGA+TGG | 0.513999 | 1_2:+12870873 | Msa0057010:CDS |
| AGAAGCTGGTTGTTAAAAGT+AGG | 0.514450 | 1_2:-12875939 | None:intergenic |
| TGCAGTCATGATTTCAACAA+TGG | 0.523773 | 1_2:+12876125 | Msa0057010:CDS |
| ATTATGAAAATCGGCGGTGT+CGG | 0.528802 | 1_2:-12870938 | None:intergenic |
| ACTAATTTAGCAAACAATCA+AGG | 0.529332 | 1_2:-12876374 | None:intergenic |
| TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 1_2:+12875563 | Msa0057010:CDS |
| TGAAATATGTCTATTGACAT+TGG | 0.529642 | 1_2:+12876461 | Msa0057010:three_prime_UTR |
| AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 1_2:-12875559 | None:intergenic |
| GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 1_2:-12874476 | None:intergenic |
| CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 1_2:-12873525 | None:intergenic |
| ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 1_2:-12873447 | None:intergenic |
| TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 1_2:+12875451 | Msa0057010:intron |
| AAAACAAGCATACACAAACT+TGG | 0.533401 | 1_2:-12876237 | None:intergenic |
| TCGCCTACAATCACCGTCCA+TGG | 0.536280 | 1_2:+12876035 | Msa0057010:CDS |
| CAATCATCCATTTATGCCAC+CGG | 0.538188 | 1_2:+12873551 | Msa0057010:CDS |
| TGAAGCGTCGTTTCCATGGA+CGG | 0.541190 | 1_2:-12876048 | None:intergenic |
| TGACATTGGAATCATGGTAA+AGG | 0.549574 | 1_2:+12876475 | Msa0057010:three_prime_UTR |
| AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 1_2:-12875511 | None:intergenic |
| GTCGTCGATTGCTGTTTCGA+CGG | 0.555171 | 1_2:-12870848 | None:intergenic |
| GGTGTCGGCGATGTTTGCTC+TGG | 0.562967 | 1_2:+12870907 | Msa0057010:CDS |
| CTAGGTTTATTAGCTGACAC+TGG | 0.571493 | 1_2:-12874398 | None:intergenic |
| AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 1_2:+12875303 | Msa0057010:CDS |
| TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 1_2:+12874479 | Msa0057010:CDS |
| GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 1_2:-12874503 | None:intergenic |
| AATTAATTACCTGAACCTCA+AGG | 0.595756 | 1_2:-12875318 | None:intergenic |
| ATGGATCCATTCATCGGTGT+CGG | 0.602190 | 1_2:+12870892 | Msa0057010:CDS |
| AGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 1_2:-12873528 | None:intergenic |
| AGTAGAGAAAATCAAACCAA+AGG | 0.615439 | 1_2:+12874419 | Msa0057010:CDS |
| TATGGAGGTTGCTGGCAGAA+TGG | 0.618667 | 1_2:-12870752 | None:intergenic |
| GGAGTGACTACAACAACAAG+TGG | 0.619797 | 1_2:+12874440 | Msa0057010:CDS |
| TTACTAGTGTTGATTTGTGG+CGG | 0.621086 | 1_2:-12875990 | None:intergenic |
| TGTAAGATGGATCCATTCAT+CGG | 0.623168 | 1_2:+12870886 | Msa0057010:CDS |
| AACTGGACACTACAATATTG+TGG | 0.637892 | 1_2:-12876207 | None:intergenic |
| GCGAAACATGCGCCATACAA+CGG | 0.641264 | 1_2:-12876016 | None:intergenic |
| AATTTAGGTGAAGTTAGCAG+AGG | 0.643088 | 1_2:+12875893 | Msa0057010:intron |
| ATGTATATGGAACTCATTGG+TGG | 0.643564 | 1_2:+12876429 | Msa0057010:three_prime_UTR |
| ATGAATGGATCCATCTTACA+CGG | 0.644634 | 1_2:-12870883 | None:intergenic |
| ATAATGTATATGGAACTCAT+TGG | 0.648854 | 1_2:+12876426 | Msa0057010:three_prime_UTR |
| TTCATCAGATGGATCACGTG+AGG | 0.658342 | 1_2:-12874465 | None:intergenic |
| GACCAGATTATGAAAATCGG+CGG | 0.666849 | 1_2:-12870944 | None:intergenic |
| CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 1_2:+12875263 | Msa0057010:CDS |
| AGTGTTGATTTGTGGCGGAG+TGG | 0.681459 | 1_2:-12875985 | None:intergenic |
| GCAGAGGATATGGTCTCTAG+GGG | 0.691454 | 1_2:+12875909 | Msa0057010:CDS |
| ATCGAAGCTGGAGAATATGG+AGG | 0.698276 | 1_2:-12870767 | None:intergenic |
| TAAGACGCTTCATATCAACA+GGG | 0.724365 | 1_2:-12874523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTATGTGAA+TGG | + | chr1_2:12871683-12871702 | Msa0057010:intron | 10.0% |
| !!! | CATAATTTTAACATTTTAAT+TGG | - | chr1_2:12873774-12873793 | None:intergenic | 10.0% |
| !! | ATATAATAGTAAATATAAAG+TGG | + | chr1_2:12873873-12873892 | Msa0057010:intron | 10.0% |
| !!! | CACTTTATATTTATTTATTT+TGG | - | chr1_2:12873926-12873945 | None:intergenic | 10.0% |
| !! | CAAAATAAATAAATATAAAG+TGG | + | chr1_2:12873924-12873943 | Msa0057010:intron | 10.0% |
| !! | ACAATATATATAAACTATTA+TGG | - | chr1_2:12874304-12874323 | None:intergenic | 10.0% |
| !!! | AGAAATCATATTATTTTTTT+GGG | + | chr1_2:12874757-12874776 | Msa0057010:intron | 10.0% |
| !! | AAATATAAAATCACATTTAA+AGG | - | chr1_2:12875083-12875102 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTGAATTAATTT+TGG | - | chr1_2:12875189-12875208 | None:intergenic | 10.0% |
| !!! | TTTATTATATTTTGTTTCTT+AGG | + | chr1_2:12875437-12875456 | Msa0057010:intron | 10.0% |
| !!! | AGACTAAATTTTACATTTTA+AGG | - | chr1_2:12871228-12871247 | None:intergenic | 15.0% |
| !! | ATAGAATACATCAATTATAA+AGG | - | chr1_2:12871355-12871374 | None:intergenic | 15.0% |
| !! | TTATGACAAAATAATAAATC+CGG | + | chr1_2:12871458-12871477 | Msa0057010:intron | 15.0% |
| !!! | ATTTTTTTTGTCTTTTACTT+TGG | + | chr1_2:12871967-12871986 | Msa0057010:intron | 15.0% |
| !!! | TTTTTTTTGTCTTTTACTTT+GGG | + | chr1_2:12871968-12871987 | Msa0057010:intron | 15.0% |
| !!! | TTAGATACTTTTATTTCAAA+AGG | + | chr1_2:12872246-12872265 | Msa0057010:intron | 15.0% |
| !! | AATTTATAGTAAGATGAATT+AGG | + | chr1_2:12872595-12872614 | Msa0057010:intron | 15.0% |
| !! | GTAAAAAAAATGAATAGAAA+AGG | + | chr1_2:12872761-12872780 | Msa0057010:intron | 15.0% |
| !!! | TTTTCTATGTTGTTTTATTT+AGG | + | chr1_2:12873014-12873033 | Msa0057010:intron | 15.0% |
| !!! | TTTCTATGTTGTTTTATTTA+GGG | + | chr1_2:12873015-12873034 | Msa0057010:intron | 15.0% |
| !! | AAAAAAAGAAACAATTCATT+AGG | - | chr1_2:12873092-12873111 | None:intergenic | 15.0% |
| !! | TAAGTAATCTTATCTTATAT+TGG | - | chr1_2:12874185-12874204 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATTCTCAATGT+TGG | + | chr1_2:12874592-12874611 | Msa0057010:intron | 15.0% |
| !! | TCTTATAATATATAAACTCA+TGG | - | chr1_2:12874738-12874757 | None:intergenic | 15.0% |
| !!! | GAGAAATCATATTATTTTTT+TGG | + | chr1_2:12874756-12874775 | Msa0057010:intron | 15.0% |
| !!! | GAAATCATATTATTTTTTTG+GGG | + | chr1_2:12874758-12874777 | Msa0057010:intron | 15.0% |
| !!! | AAATCATATTATTTTTTTGG+GGG | + | chr1_2:12874759-12874778 | Msa0057010:intron | 15.0% |
| !! | ATATAATAAAATTCTCATAG+TGG | - | chr1_2:12875427-12875446 | None:intergenic | 15.0% |
| !! | AACTTTATATATATACTTAG+TGG | + | chr1_2:12876314-12876333 | Msa0057010:three_prime_UTR | 15.0% |
| !!! | TTCAAATTTTGCCTATTTAT+AGG | + | chr1_2:12870637-12870656 | Msa0057010:five_prime_UTR | 20.0% |
| !! | AAATCATCATTTATTATTGC+TGG | + | chr1_2:12871099-12871118 | Msa0057010:intron | 20.0% |
| !!! | TACATTTTAAGGTGAATAAT+CGG | - | chr1_2:12871217-12871236 | None:intergenic | 20.0% |
| !!! | ATTATAAAGGTTGATTTGAT+TGG | - | chr1_2:12871342-12871361 | None:intergenic | 20.0% |
| !!! | GTATCACTACAATTTTAATT+TGG | - | chr1_2:12871550-12871569 | None:intergenic | 20.0% |
| !!! | TCAATAATTCATGTTTGTTT+TGG | - | chr1_2:12871585-12871604 | None:intergenic | 20.0% |
| !! | TCTATCTTAATTCTTTGATT+TGG | - | chr1_2:12871652-12871671 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTGAATGGAATT+TGG | + | chr1_2:12871690-12871709 | Msa0057010:intron | 20.0% |
| !! | ATGGAATTTGGTATATTTAA+AGG | + | chr1_2:12871702-12871721 | Msa0057010:intron | 20.0% |
| !! | TGGAATTTGGTATATTTAAA+GGG | + | chr1_2:12871703-12871722 | Msa0057010:intron | 20.0% |
| !!! | ATAATAACAAAAGAGTATAG+TGG | - | chr1_2:12871800-12871819 | None:intergenic | 20.0% |
| !!! | TGAACATCTTTTTTTTTTTG+TGG | - | chr1_2:12872133-12872152 | None:intergenic | 20.0% |
| !! | TGAGATTTCTATTTGAATAA+AGG | + | chr1_2:12872441-12872460 | Msa0057010:intron | 20.0% |
| !! | GAGATTTCTATTTGAATAAA+GGG | + | chr1_2:12872442-12872461 | Msa0057010:intron | 20.0% |
| !! | TTAACCAAACAACAAAAATA+GGG | - | chr1_2:12872479-12872498 | None:intergenic | 20.0% |
| !! | ATTAACCAAACAACAAAAAT+AGG | - | chr1_2:12872480-12872499 | None:intergenic | 20.0% |
| !! | ATATAATAGAAAAGAAGAGA+GGG | - | chr1_2:12872675-12872694 | None:intergenic | 20.0% |
| !! | AATATAATAGAAAAGAAGAG+AGG | - | chr1_2:12872676-12872695 | None:intergenic | 20.0% |
| !!! | TTTTTAATAGTGTTTGATTG+AGG | - | chr1_2:12872700-12872719 | None:intergenic | 20.0% |
| !!! | TTCTATGTTGTTTTATTTAG+GGG | + | chr1_2:12873016-12873035 | Msa0057010:intron | 20.0% |
| !!! | ATGATTTTTTACCTTCTTTA+AGG | - | chr1_2:12873147-12873166 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCCTGAATTAAT+AGG | - | chr1_2:12873210-12873229 | None:intergenic | 20.0% |
| !!! | TATATAACATAGAGTATTAC+CGG | - | chr1_2:12873573-12873592 | None:intergenic | 20.0% |
| !!! | AGAAATATGTTTCTTTTCTT+TGG | + | chr1_2:12873672-12873691 | Msa0057010:intron | 20.0% |
| !! | TAAATATAAAGTGGAGTTTA+GGG | + | chr1_2:12873882-12873901 | Msa0057010:intron | 20.0% |
| !!! | ATTTATTTTGGTACAAAAGA+GGG | - | chr1_2:12873914-12873933 | None:intergenic | 20.0% |
| !!! | TATTTATTTTGGTACAAAAG+AGG | - | chr1_2:12873915-12873934 | None:intergenic | 20.0% |
| !! | ACATGGATTTCTTAAATTTA+TGG | - | chr1_2:12873988-12874007 | None:intergenic | 20.0% |
| !! | ACAATGAAGTTATCTATAAA+GGG | - | chr1_2:12874258-12874277 | None:intergenic | 20.0% |
| !! | TACAATGAAGTTATCTATAA+AGG | - | chr1_2:12874259-12874278 | None:intergenic | 20.0% |
| !!! | ATATATCATAGAGCTTATTT+TGG | + | chr1_2:12874346-12874365 | Msa0057010:intron | 20.0% |
| !!! | TTTTGGATTGAATTGTATAA+TGG | + | chr1_2:12874363-12874382 | Msa0057010:intron | 20.0% |
| !! | TTCAAAAAAATTCTCAATGT+TGG | + | chr1_2:12874619-12874638 | Msa0057010:intron | 20.0% |
| !!! | ATTAAAGAAGAACTTTTACT+AGG | + | chr1_2:12874672-12874691 | Msa0057010:intron | 20.0% |
| !!! | AATCATATTATTTTTTTGGG+GGG | + | chr1_2:12874760-12874779 | Msa0057010:intron | 20.0% |
| !! | AGAGAAATTATAATCTAACA+AGG | + | chr1_2:12874784-12874803 | Msa0057010:intron | 20.0% |
| !!! | TGCATATTTGAATTTACTTT+TGG | + | chr1_2:12874931-12874950 | Msa0057010:intron | 20.0% |
| !!! | TGAAGACTTAAAATTGATTT+TGG | + | chr1_2:12874972-12874991 | Msa0057010:intron | 20.0% |
| !!! | AAATTGATTTTGGTATGTTT+TGG | + | chr1_2:12874982-12875001 | Msa0057010:intron | 20.0% |
| !!! | GGATTTTTTTTTGTTACAAA+AGG | - | chr1_2:12875370-12875389 | None:intergenic | 20.0% |
| !! | AAAAAAATGTTGTGACATAT+CGG | + | chr1_2:12875688-12875707 | Msa0057010:intron | 20.0% |
| !!! | TTTTGCCAAAAATAATTTGT+TGG | + | chr1_2:12875809-12875828 | Msa0057010:intron | 20.0% |
| !!! | TTTGCCAAAAATAATTTGTT+GGG | + | chr1_2:12875810-12875829 | Msa0057010:intron | 20.0% |
| !!! | AAGAATTTTATGTCCAATTT+AGG | + | chr1_2:12875878-12875897 | Msa0057010:intron | 20.0% |
| ! | TCATTTATTATTGCTGGTAA+TGG | + | chr1_2:12871105-12871124 | Msa0057010:intron | 25.0% |
| !!! | ACATTTTAAGGTGAATAATC+GGG | - | chr1_2:12871216-12871235 | None:intergenic | 25.0% |
| !!! | ATTAGAGATATTCAAGTTGT+TGG | + | chr1_2:12871412-12871431 | Msa0057010:intron | 25.0% |
| !!! | TGTTTGTTTTGGTAGAATTA+CGG | - | chr1_2:12871574-12871593 | None:intergenic | 25.0% |
| !!! | ACATCTTTTTTTTTTTGTGG+TGG | - | chr1_2:12872130-12872149 | None:intergenic | 25.0% |
| !! | GACTAATACAAGGTTTTTAT+TGG | + | chr1_2:12872271-12872290 | Msa0057010:intron | 25.0% |
| ! | TATAATTGACAACCAAACTT+TGG | + | chr1_2:12872378-12872397 | Msa0057010:intron | 25.0% |
| ! | TTTCTATTTGAATAAAGGGA+TGG | + | chr1_2:12872446-12872465 | Msa0057010:intron | 25.0% |
| !!! | CTTTTCTTGGTTAGTTTTTT+AGG | - | chr1_2:12872636-12872655 | None:intergenic | 25.0% |
| !! | GCTATAATTCATTCTTTTCT+TGG | - | chr1_2:12872649-12872668 | None:intergenic | 25.0% |
| ! | TTACAAGTGACAAATTGAAA+AGG | + | chr1_2:12872731-12872750 | Msa0057010:intron | 25.0% |
| ! | GACAAATTGAAAAGGAATAT+AGG | + | chr1_2:12872739-12872758 | Msa0057010:intron | 25.0% |
| ! | AATATAATAGAGCAACAACA+TGG | + | chr1_2:12872784-12872803 | Msa0057010:intron | 25.0% |
| ! | ATATAATAGAGCAACAACAT+GGG | + | chr1_2:12872785-12872804 | Msa0057010:intron | 25.0% |
| !! | GGACATAATTTTCATATAGA+AGG | - | chr1_2:12872823-12872842 | None:intergenic | 25.0% |
| !! | CATATTTGTTAAGAGTCTAT+TGG | - | chr1_2:12872873-12872892 | None:intergenic | 25.0% |
| !!! | TATCTTTACTTTTCATGAAG+TGG | + | chr1_2:12872901-12872920 | Msa0057010:intron | 25.0% |
| ! | CAATAATACTATAACTAGCT+AGG | - | chr1_2:12872928-12872947 | None:intergenic | 25.0% |
| ! | TAGAAAAGCTAAGCTATAAA+AGG | - | chr1_2:12873001-12873020 | None:intergenic | 25.0% |
| !!! | TTTGATTTATACCTTTTGCT+TGG | + | chr1_2:12873053-12873072 | Msa0057010:intron | 25.0% |
| ! | AATAAAGACGTGTAAATGAA+AGG | + | chr1_2:12873116-12873135 | Msa0057010:intron | 25.0% |
| ! | GCTACATATGAAAATTTGAT+AGG | + | chr1_2:12873167-12873186 | Msa0057010:intron | 25.0% |
| !! | TTAGAGTAATGTTATTTGTC+TGG | - | chr1_2:12873373-12873392 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAATGAAGTTA+CGG | - | chr1_2:12873450-12873469 | None:intergenic | 25.0% |
| !!! | CAAACAAGAGTATTATTTGT+TGG | - | chr1_2:12873479-12873498 | None:intergenic | 25.0% |
| ! | TTTGCAAGCAAAATTTATAC+TGG | - | chr1_2:12873616-12873635 | None:intergenic | 25.0% |
| ! | GTAAATATAAAGTGGAGTTT+AGG | + | chr1_2:12873881-12873900 | Msa0057010:intron | 25.0% |
| ! | ATAAAGTGGAGTCTTAAAAT+AGG | + | chr1_2:12873938-12873957 | Msa0057010:intron | 25.0% |
| !!! | GGGATTTTTAAGATAATTGT+AGG | + | chr1_2:12874028-12874047 | Msa0057010:intron | 25.0% |
| !! | GGATTTATCTAGTTCAAAAT+AGG | - | chr1_2:12874712-12874731 | None:intergenic | 25.0% |
| ! | TAATATATAAACTCATGGTC+TGG | - | chr1_2:12874733-12874752 | None:intergenic | 25.0% |
| ! | GAAATTATAATCTAACAAGG+TGG | + | chr1_2:12874787-12874806 | Msa0057010:intron | 25.0% |
| ! | ATAACTAGTGATTTCAAAGA+TGG | - | chr1_2:12875391-12875410 | None:intergenic | 25.0% |
| !! | AAAATTCTCATAGTGGAAAT+TGG | - | chr1_2:12875420-12875439 | None:intergenic | 25.0% |
| !!! | GAATTCTTGATTTGTAATCA+CGG | - | chr1_2:12875725-12875744 | None:intergenic | 25.0% |
| !! | TTACATGAATTTGATGATCT+TGG | - | chr1_2:12875769-12875788 | None:intergenic | 25.0% |
| !!! | TTGCCAAAAATAATTTGTTG+GGG | + | chr1_2:12875811-12875830 | Msa0057010:intron | 25.0% |
| !! | TATCCCCAACAAATTATTTT+TGG | - | chr1_2:12875817-12875836 | None:intergenic | 25.0% |
| ! | ACTAATTTAGCAAACAATCA+AGG | - | chr1_2:12876377-12876396 | None:intergenic | 25.0% |
| ! | ATAATGTATATGGAACTCAT+TGG | + | chr1_2:12876426-12876445 | Msa0057010:three_prime_UTR | 25.0% |
| ! | TGAAATATGTCTATTGACAT+TGG | + | chr1_2:12876461-12876480 | Msa0057010:three_prime_UTR | 25.0% |
| GAGAGAAAAGAAAAGGAAAA+GGG | - | chr1_2:12870684-12870703 | None:intergenic | 30.0% | |
| AGAGAGAAAAGAAAAGGAAA+AGG | - | chr1_2:12870685-12870704 | None:intergenic | 30.0% | |
| ACTGACCAGATTATGAAAAT+CGG | - | chr1_2:12870950-12870969 | None:intergenic | 30.0% | |
| TAATACAACCGTAGTTAGTA+GGG | - | chr1_2:12871050-12871069 | None:intergenic | 30.0% | |
| TTAATACAACCGTAGTTAGT+AGG | - | chr1_2:12871051-12871070 | None:intergenic | 30.0% | |
| TATCAAAGTAGAAACTCCAA+AGG | - | chr1_2:12871136-12871155 | None:intergenic | 30.0% | |
| CTTCAAAGATATACTTCAAC+CGG | - | chr1_2:12871480-12871499 | None:intergenic | 30.0% | |
| ATATTTAAAGGGTGAAGCAA+AGG | + | chr1_2:12871714-12871733 | Msa0057010:intron | 30.0% | |
| ! | ACTTTGTTTAGTGATGAAGA+AGG | + | chr1_2:12871763-12871782 | Msa0057010:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | - | chr1_2:12872125-12872144 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTTTTGTGGTGGT+CGG | - | chr1_2:12872126-12872145 | None:intergenic | 30.0% |
| AGTCAAACATTAAACATGCA+TGG | + | chr1_2:12872215-12872234 | Msa0057010:intron | 30.0% | |
| TCAAAAGGAAGACTAATACA+AGG | + | chr1_2:12872261-12872280 | Msa0057010:intron | 30.0% | |
| !! | GAATAACCATTGTATTGGTT+TGG | - | chr1_2:12872300-12872319 | None:intergenic | 30.0% |
| ATAGCGAATAACCATTGTAT+TGG | - | chr1_2:12872305-12872324 | None:intergenic | 30.0% | |
| !!! | GAAACCCTATTTTTGTTGTT+TGG | + | chr1_2:12872472-12872491 | Msa0057010:intron | 30.0% |
| CATGTGATATTGAAGAAACT+TGG | - | chr1_2:12872567-12872586 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTAGGAGAAGCATA+GGG | - | chr1_2:12872624-12872643 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTAGGAGAAGCAT+AGG | - | chr1_2:12872625-12872644 | None:intergenic | 30.0% |
| ! | ATTTTCATATAGAAGGCCAA+AGG | - | chr1_2:12872816-12872835 | None:intergenic | 30.0% |
| TGAAAATTATGTCCAATGCA+TGG | + | chr1_2:12872829-12872848 | Msa0057010:intron | 30.0% | |
| GAAAGGAATATCCTTAAAGA+AGG | + | chr1_2:12873133-12873152 | Msa0057010:intron | 30.0% | |
| AGTTGACAACCTATTAATTC+AGG | + | chr1_2:12873198-12873217 | Msa0057010:intron | 30.0% | |
| TCACATAGCTAGAATTTGAT+TGG | + | chr1_2:12873299-12873318 | Msa0057010:intron | 30.0% | |
| ! | GTAACTTCATTTTCAACATG+TGG | + | chr1_2:12873449-12873468 | Msa0057010:CDS | 30.0% |
| AATCCATGTAATCATGAAGT+TGG | + | chr1_2:12873999-12874018 | Msa0057010:intron | 30.0% | |
| ! | CTTTTTGTGTTATGATGCAA+TGG | + | chr1_2:12874113-12874132 | Msa0057010:intron | 30.0% |
| TGTAATTATGACTGTTGCAT+TGG | - | chr1_2:12874213-12874232 | None:intergenic | 30.0% | |
| !! | TTGGTTTGATTTTCTCTACT+AGG | - | chr1_2:12874419-12874438 | None:intergenic | 30.0% |
| AGTAGAGAAAATCAAACCAA+AGG | + | chr1_2:12874419-12874438 | Msa0057010:CDS | 30.0% | |
| CAAACTATATAACTTCAAGC+TGG | - | chr1_2:12875051-12875070 | None:intergenic | 30.0% | |
| TACACTCTTAATGTGATTTC+AGG | + | chr1_2:12875233-12875252 | Msa0057010:intron | 30.0% | |
| AAGAAGAAAACAAGCACATT+TGG | + | chr1_2:12875291-12875310 | Msa0057010:CDS | 30.0% | |
| AATTAATTACCTGAACCTCA+AGG | - | chr1_2:12875321-12875340 | None:intergenic | 30.0% | |
| CAATCTAATCGTAATACACA+TGG | - | chr1_2:12875614-12875633 | None:intergenic | 30.0% | |
| !! | TGTTCAATTGACTCTGATTT+TGG | - | chr1_2:12875965-12875984 | None:intergenic | 30.0% |
| !! | AGATTACTAGTGTTGATTTG+TGG | - | chr1_2:12875996-12876015 | None:intergenic | 30.0% |
| ACAAACTTGGATATTCTAAC+TGG | - | chr1_2:12876227-12876246 | None:intergenic | 30.0% | |
| AAAACAAGCATACACAAACT+TGG | - | chr1_2:12876240-12876259 | None:intergenic | 30.0% | |
| TTAGTGGTGTATGTATCAAA+TGG | + | chr1_2:12876330-12876349 | Msa0057010:three_prime_UTR | 30.0% | |
| ! | GTGATGGTGTATAATGTATA+TGG | + | chr1_2:12876416-12876435 | Msa0057010:three_prime_UTR | 30.0% |
| AAGAGGAGAGAGAAAAGAAA+AGG | - | chr1_2:12870691-12870710 | None:intergenic | 35.0% | |
| AGGAGAGAAAAATGGAAAAG+AGG | - | chr1_2:12870708-12870727 | None:intergenic | 35.0% | |
| ! | TTGATCATGAACTTTTCACG+AGG | + | chr1_2:12870815-12870834 | Msa0057010:CDS | 35.0% |
| ATGAATGGATCCATCTTACA+CGG | - | chr1_2:12870886-12870905 | None:intergenic | 35.0% | |
| TGTAAGATGGATCCATTCAT+CGG | + | chr1_2:12870886-12870905 | Msa0057010:CDS | 35.0% | |
| AAACGTTTCCCTACTAACTA+CGG | + | chr1_2:12871039-12871058 | Msa0057010:intron | 35.0% | |
| !! | AGAGATATTCAAGTTGTTGG+AGG | + | chr1_2:12871415-12871434 | Msa0057010:intron | 35.0% |
| AAGTTCTATCACAAAACCAC+AGG | - | chr1_2:12871622-12871641 | None:intergenic | 35.0% | |
| ACTGAAACATGAACATCTAG+AGG | - | chr1_2:12872038-12872057 | None:intergenic | 35.0% | |
| TGCATAGTATATGCAAAGTC+CGG | + | chr1_2:12872090-12872109 | Msa0057010:intron | 35.0% | |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | - | chr1_2:12872124-12872143 | None:intergenic | 35.0% |
| CCTTATGCAGAGAGAATTTA+TGG | - | chr1_2:12872177-12872196 | None:intergenic | 35.0% | |
| CCATAAATTCTCTCTGCATA+AGG | + | chr1_2:12872174-12872193 | Msa0057010:intron | 35.0% | |
| GCATAAGGTGATTATTTACG+AGG | + | chr1_2:12872189-12872208 | Msa0057010:intron | 35.0% | |
| ! | ATCAATCTTTTCGCTTCCTT+CGG | - | chr1_2:12872417-12872436 | None:intergenic | 35.0% |
| GATATTGAAGAAACTTGGAG+AGG | - | chr1_2:12872562-12872581 | None:intergenic | 35.0% | |
| TCCAATGCATGGTATCTATT+AGG | + | chr1_2:12872840-12872859 | Msa0057010:intron | 35.0% | |
| ACCTAATAGATACCATGCAT+TGG | - | chr1_2:12872844-12872863 | None:intergenic | 35.0% | |
| ATTATTGCCCACAATCTTAG+CGG | + | chr1_2:12872941-12872960 | Msa0057010:intron | 35.0% | |
| ! | GTTTTTGCTTTCCAAGCAAA+AGG | - | chr1_2:12873067-12873086 | None:intergenic | 35.0% |
| ATCATACATGTGATCGTATG+TGG | - | chr1_2:12873280-12873299 | None:intergenic | 35.0% | |
| AAGGGCTGAATTAAGAACAA+TGG | - | chr1_2:12873412-12873431 | None:intergenic | 35.0% | |
| ! | ATAACATAGAGTATTACCGG+TGG | - | chr1_2:12873570-12873589 | None:intergenic | 35.0% |
| !! | TAAAGTGGAGTTTAGGGTTT+TGG | + | chr1_2:12873888-12873907 | Msa0057010:intron | 35.0% |
| TTGCCAACTTCATGATTACA+TGG | - | chr1_2:12874005-12874024 | None:intergenic | 35.0% | |
| TAATCATGAAGTTGGCAAGT+TGG | + | chr1_2:12874007-12874026 | Msa0057010:intron | 35.0% | |
| AATCATGAAGTTGGCAAGTT+GGG | + | chr1_2:12874008-12874027 | Msa0057010:intron | 35.0% | |
| TTGTGTTATGATGCAATGGT+TGG | + | chr1_2:12874117-12874136 | Msa0057010:intron | 35.0% | |
| TGTGTTATGATGCAATGGTT+GGG | + | chr1_2:12874118-12874137 | Msa0057010:intron | 35.0% | |
| ! | ATTATGACTGTTGCATTGGT+GGG | - | chr1_2:12874209-12874228 | None:intergenic | 35.0% |
| AATTATGACTGTTGCATTGG+TGG | - | chr1_2:12874210-12874229 | None:intergenic | 35.0% | |
| TAAGACGCTTCATATCAACA+GGG | - | chr1_2:12874526-12874545 | None:intergenic | 35.0% | |
| ! | TTGATATGAAGCGTCTTAGA+AGG | + | chr1_2:12874528-12874547 | Msa0057010:CDS | 35.0% |
| CTATTGTCATCATGTACATG+TGG | - | chr1_2:12874847-12874866 | None:intergenic | 35.0% | |
| GTGTTCAACTTTCACGTTAA+CGG | + | chr1_2:12875110-12875129 | Msa0057010:intron | 35.0% | |
| CTCTTAATGTGATTTCAGGA+AGG | + | chr1_2:12875237-12875256 | Msa0057010:intron | 35.0% | |
| !! | ATGTGCTTGTTTTCTTCTTC+TGG | - | chr1_2:12875290-12875309 | None:intergenic | 35.0% |
| CATCTGTAAGCTGCTTAAAT+AGG | - | chr1_2:12875491-12875510 | None:intergenic | 35.0% | |
| AGCTCTTAAAGCTTCAACAT+CGG | - | chr1_2:12875562-12875581 | None:intergenic | 35.0% | |
| !! | TGTTGAAGCTTTAAGAGCTA+AGG | + | chr1_2:12875563-12875582 | Msa0057010:CDS | 35.0% |
| ACATGGAAGAACTTGTAAAG+TGG | - | chr1_2:12875597-12875616 | None:intergenic | 35.0% | |
| TTTGTAATCACGGTATGTGT+TGG | - | chr1_2:12875715-12875734 | None:intergenic | 35.0% | |
| TCTGCTAACTTCACCTAAAT+TGG | - | chr1_2:12875894-12875913 | None:intergenic | 35.0% | |
| AATTTAGGTGAAGTTAGCAG+AGG | + | chr1_2:12875893-12875912 | Msa0057010:intron | 35.0% | |
| AGAAGCTGGTTGTTAAAAGT+AGG | - | chr1_2:12875942-12875961 | None:intergenic | 35.0% | |
| !! | TTACTAGTGTTGATTTGTGG+CGG | - | chr1_2:12875993-12876012 | None:intergenic | 35.0% |
| TGCAGTCATGATTTCAACAA+TGG | + | chr1_2:12876125-12876144 | Msa0057010:CDS | 35.0% | |
| AACTGGACACTACAATATTG+TGG | - | chr1_2:12876210-12876229 | None:intergenic | 35.0% | |
| ! | CATCACACTCACTTCATTTT+TGG | - | chr1_2:12876402-12876421 | None:intergenic | 35.0% |
| CAAAAATGAAGTGAGTGTGA+TGG | + | chr1_2:12876400-12876419 | Msa0057010:three_prime_UTR | 35.0% | |
| ATGTATATGGAACTCATTGG+TGG | + | chr1_2:12876429-12876448 | Msa0057010:three_prime_UTR | 35.0% | |
| GTCTATTGACATTGGAATCA+TGG | + | chr1_2:12876469-12876488 | Msa0057010:three_prime_UTR | 35.0% | |
| TGACATTGGAATCATGGTAA+AGG | + | chr1_2:12876475-12876494 | Msa0057010:three_prime_UTR | 35.0% | |
| CATTTCGCAGGAGAGAAAAA+TGG | - | chr1_2:12870716-12870735 | None:intergenic | 40.0% | |
| ! | CATTTTTCTCTCCTGCGAAA+TGG | + | chr1_2:12870714-12870733 | Msa0057010:exon | 40.0% |
| ATTCTGCTGTGATCCATTTG+AGG | - | chr1_2:12870795-12870814 | None:intergenic | 40.0% | |
| ! | ATCATGAACTTTTCACGAGG+CGG | + | chr1_2:12870818-12870837 | Msa0057010:CDS | 40.0% |
| CGATGTAAAACCGTGTAAGA+TGG | + | chr1_2:12870873-12870892 | Msa0057010:CDS | 40.0% | |
| ATTATGAAAATCGGCGGTGT+CGG | - | chr1_2:12870941-12870960 | None:intergenic | 40.0% | |
| GACCAGATTATGAAAATCGG+CGG | - | chr1_2:12870947-12870966 | None:intergenic | 40.0% | |
| AAGCTTGAAAGTCACGTTAG+AGG | - | chr1_2:12871013-12871032 | None:intergenic | 40.0% | |
| !!! | GCTGGTAATGGTTTTTCCTT+TGG | + | chr1_2:12871117-12871136 | Msa0057010:intron | 40.0% |
| GAAAGCAAACATGAAACCTG+TGG | + | chr1_2:12871603-12871622 | Msa0057010:intron | 40.0% | |
| TGAAGCAAAGGAACTTGTGA+AGG | + | chr1_2:12871726-12871745 | Msa0057010:intron | 40.0% | |
| ! | TGTGTTGTCTTTTGAACTCG+TGG | + | chr1_2:12871904-12871923 | Msa0057010:intron | 40.0% |
| ! | GTGTTGTCTTTTGAACTCGT+GGG | + | chr1_2:12871905-12871924 | Msa0057010:intron | 40.0% |
| GCATAGTATATGCAAAGTCC+GGG | + | chr1_2:12872091-12872110 | Msa0057010:intron | 40.0% | |
| CATAGTATATGCAAAGTCCG+GGG | + | chr1_2:12872092-12872111 | Msa0057010:intron | 40.0% | |
| TGGCTTCCAAACCAATACAA+TGG | + | chr1_2:12872291-12872310 | Msa0057010:intron | 40.0% | |
| TGAGAGACATGTCCAAAGTT+TGG | - | chr1_2:12872393-12872412 | None:intergenic | 40.0% | |
| TTATTGCCCACAATCTTAGC+GGG | + | chr1_2:12872942-12872961 | Msa0057010:intron | 40.0% | |
| ATTCAGCCCTTCATAATTGC+AGG | + | chr1_2:12873421-12873440 | Msa0057010:intron | 40.0% | |
| AGACTCAATAGTTGCAGTGA+TGG | - | chr1_2:12873531-12873550 | None:intergenic | 40.0% | |
| CAATCATCCATTTATGCCAC+CGG | + | chr1_2:12873551-12873570 | Msa0057010:CDS | 40.0% | |
| AGTATTACCGGTGGCATAAA+TGG | - | chr1_2:12873561-12873580 | None:intergenic | 40.0% | |
| GTGTTATGATGCAATGGTTG+GGG | + | chr1_2:12874119-12874138 | Msa0057010:intron | 40.0% | |
| ! | TTATGACTGTTGCATTGGTG+GGG | - | chr1_2:12874208-12874227 | None:intergenic | 40.0% |
| CTAGGTTTATTAGCTGACAC+TGG | - | chr1_2:12874401-12874420 | None:intergenic | 40.0% | |
| TGTTGTTGTAGTCACTCCTT+TGG | - | chr1_2:12874438-12874457 | None:intergenic | 40.0% | |
| GCTTCATCATCTTCATCAGA+TGG | - | chr1_2:12874479-12874498 | None:intergenic | 40.0% | |
| TCTGATGAAGATGATGAAGC+AGG | + | chr1_2:12874479-12874498 | Msa0057010:CDS | 40.0% | |
| GGGTTTGTACTTTGTTCACA+AGG | - | chr1_2:12874506-12874525 | None:intergenic | 40.0% | |
| CTAAGACGCTTCATATCAAC+AGG | - | chr1_2:12874527-12874546 | None:intergenic | 40.0% | |
| ! | TTTTCTTCTTCTGGACCTTC+TGG | - | chr1_2:12875281-12875300 | None:intergenic | 40.0% |
| !! | TTTCTTAGGTTGAACAGCTG+AGG | + | chr1_2:12875451-12875470 | Msa0057010:intron | 40.0% |
| TGTTAGCATCGCGAAATTGT+TGG | - | chr1_2:12875518-12875537 | None:intergenic | 40.0% | |
| !! | CAACATCGGATTTTAGCACT+CGG | - | chr1_2:12875548-12875567 | None:intergenic | 40.0% |
| CACTAGTAATCTCCGTTGTA+TGG | + | chr1_2:12876004-12876023 | Msa0057010:CDS | 40.0% | |
| AGTGGACAGAATTCAGCTAT+TGG | + | chr1_2:12876080-12876099 | Msa0057010:CDS | 40.0% | |
| CAGAATTCAGCTATTGGACT+TGG | + | chr1_2:12876086-12876105 | Msa0057010:CDS | 40.0% | |
| !! | TGAGCTCTTTGACTAGCTTA+TGG | + | chr1_2:12876165-12876184 | Msa0057010:CDS | 40.0% |
| GCTGCTTCGTGCCTATAAAT+AGG | - | chr1_2:12870651-12870670 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGTTCCATTTCGC+AGG | - | chr1_2:12870728-12870747 | None:intergenic | 45.0% |
| CCTGCGAAATGGAACCAAAA+TGG | + | chr1_2:12870725-12870744 | Msa0057010:exon | 45.0% | |
| ATCGAAGCTGGAGAATATGG+AGG | - | chr1_2:12870770-12870789 | None:intergenic | 45.0% | |
| GTCATCGAAGCTGGAGAATA+TGG | - | chr1_2:12870773-12870792 | None:intergenic | 45.0% | |
| !! | ATTGCTGTTTCGACGGTAAC+AGG | - | chr1_2:12870844-12870863 | None:intergenic | 45.0% |
| ATGGATCCATTCATCGGTGT+CGG | + | chr1_2:12870892-12870911 | Msa0057010:CDS | 45.0% | |
| !!! | CACCGCCGATTTTCATAATC+TGG | + | chr1_2:12870942-12870961 | Msa0057010:CDS | 45.0% |
| ! | AAACAAAGTCCCTGATGACG+TGG | - | chr1_2:12871752-12871771 | None:intergenic | 45.0% |
| TGGGAACGCACTACTTTATG+AGG | + | chr1_2:12871924-12871943 | Msa0057010:intron | 45.0% | |
| AACAACATGGGTCGTTCCTT+TGG | + | chr1_2:12872797-12872816 | Msa0057010:intron | 45.0% | |
| CGGCATCCTGCAATTATGAA+GGG | - | chr1_2:12873430-12873449 | None:intergenic | 45.0% | |
| ACGGCATCCTGCAATTATGA+AGG | - | chr1_2:12873431-12873450 | None:intergenic | 45.0% | |
| ! | GTTCTTGGGAGTGAGGTTTT+GGG | - | chr1_2:12873504-12873523 | None:intergenic | 45.0% |
| ! | AGTTCTTGGGAGTGAGGTTT+TGG | - | chr1_2:12873505-12873524 | None:intergenic | 45.0% |
| CTCAATAGTTGCAGTGATGG+TGG | - | chr1_2:12873528-12873547 | None:intergenic | 45.0% | |
| GGAGTGACTACAACAACAAG+TGG | + | chr1_2:12874440-12874459 | Msa0057010:CDS | 45.0% | |
| TTCATCAGATGGATCACGTG+AGG | - | chr1_2:12874468-12874487 | None:intergenic | 45.0% | |
| GGTGAAGTTAGCAGAGGATA+TGG | + | chr1_2:12875899-12875918 | Msa0057010:intron | 45.0% | |
| TAGCAGAGGATATGGTCTCT+AGG | + | chr1_2:12875907-12875926 | Msa0057010:CDS | 45.0% | |
| AGCAGAGGATATGGTCTCTA+GGG | + | chr1_2:12875908-12875927 | Msa0057010:CDS | 45.0% | |
| !! | GACTCTGATTTTGGAGAAGC+TGG | - | chr1_2:12875956-12875975 | None:intergenic | 45.0% |
| TTTCCATGGACGGTGATTGT+AGG | - | chr1_2:12876041-12876060 | None:intergenic | 45.0% | |
| !! | CATATGAAGCGTCGTTTCCA+TGG | - | chr1_2:12876055-12876074 | None:intergenic | 45.0% |
| CATGGAAACGACGCTTCATA+TGG | + | chr1_2:12876053-12876072 | Msa0057010:CDS | 45.0% | |
| ! | GACGCTTCATATGGTGTTAG+TGG | + | chr1_2:12876062-12876081 | Msa0057010:CDS | 45.0% |
| ! | GGCAGAATGGTGCTCCATTT+TGG | - | chr1_2:12870742-12870761 | None:intergenic | 50.0% |
| TATGGAGGTTGCTGGCAGAA+TGG | - | chr1_2:12870755-12870774 | None:intergenic | 50.0% | |
| CTGGAGAATATGGAGGTTGC+TGG | - | chr1_2:12870763-12870782 | None:intergenic | 50.0% | |
| ! | CCATTTGAGGTCATCGAAGC+TGG | - | chr1_2:12870782-12870801 | None:intergenic | 50.0% |
| CCAGCTTCGATGACCTCAAA+TGG | + | chr1_2:12870779-12870798 | Msa0057010:CDS | 50.0% | |
| !! | GTCGTCGATTGCTGTTTCGA+CGG | - | chr1_2:12870851-12870870 | None:intergenic | 50.0% |
| TTGTGAAGGCCACGTCATCA+GGG | + | chr1_2:12871740-12871759 | Msa0057010:intron | 50.0% | |
| TGGACATGTCTCTCAACCGA+AGG | + | chr1_2:12872398-12872417 | Msa0057010:intron | 50.0% | |
| CAAGGACCCGCTAAGATTGT+GGG | - | chr1_2:12872951-12872970 | None:intergenic | 50.0% | |
| ! | CACAATCTTAGCGGGTCCTT+GGG | + | chr1_2:12872950-12872969 | Msa0057010:intron | 50.0% |
| AACACTCCACCTCTTTCCCA+AGG | - | chr1_2:12872969-12872988 | None:intergenic | 50.0% | |
| !! | GCAGTGATGGTGGAGTTCTT+GGG | - | chr1_2:12873518-12873537 | None:intergenic | 50.0% |
| !! | TGCAGTGATGGTGGAGTTCT+TGG | - | chr1_2:12873519-12873538 | None:intergenic | 50.0% |
| AGCACATTTGGCAGACCTTG+AGG | + | chr1_2:12875303-12875322 | Msa0057010:CDS | 50.0% | |
| TTTGGCAGACCTTGAGGTTC+AGG | + | chr1_2:12875309-12875328 | Msa0057010:CDS | 50.0% | |
| !! | TTAGGTTGAACAGCTGAGGC+TGG | + | chr1_2:12875455-12875474 | Msa0057010:intron | 50.0% |
| AGCATCGCGAAATTGTTGGC+TGG | - | chr1_2:12875514-12875533 | None:intergenic | 50.0% | |
| GCAGAGGATATGGTCTCTAG+GGG | + | chr1_2:12875909-12875928 | Msa0057010:CDS | 50.0% | |
| !! | AGTGTTGATTTGTGGCGGAG+TGG | - | chr1_2:12875988-12876007 | None:intergenic | 50.0% |
| GCGAAACATGCGCCATACAA+CGG | - | chr1_2:12876019-12876038 | None:intergenic | 50.0% | |
| !! | TGAAGCGTCGTTTCCATGGA+CGG | - | chr1_2:12876051-12876070 | None:intergenic | 50.0% |
| ACATCGCCGACACCGATGAA+TGG | - | chr1_2:12870901-12870920 | None:intergenic | 55.0% | |
| CTTGTGAAGGCCACGTCATC+AGG | + | chr1_2:12871739-12871758 | Msa0057010:intron | 55.0% | |
| CCAAGGACCCGCTAAGATTG+TGG | - | chr1_2:12872952-12872971 | None:intergenic | 55.0% | |
| ! | CCACAATCTTAGCGGGTCCT+TGG | + | chr1_2:12872949-12872968 | Msa0057010:intron | 55.0% |
| ! | TTAGCGGGTCCTTGGGAAAG+AGG | + | chr1_2:12872957-12872976 | Msa0057010:intron | 55.0% |
| TGGTGGAGTTCTTGGGAGTG+AGG | - | chr1_2:12873511-12873530 | None:intergenic | 55.0% | |
| CTAATCGCGAGTCTGCCAGA+AGG | + | chr1_2:12875263-12875282 | Msa0057010:CDS | 55.0% | |
| TCGCCTACAATCACCGTCCA+TGG | + | chr1_2:12876035-12876054 | Msa0057010:CDS | 55.0% | |
| !! | GGTGTCGGCGATGTTTGCTC+TGG | + | chr1_2:12870907-12870926 | Msa0057010:CDS | 60.0% |
| GGTGGTCGGGGTTTGAACCC+CGG | - | chr1_2:12872112-12872131 | None:intergenic | 65.0% | |
| GCGGGTCCTTGGGAAAGAGG+TGG | + | chr1_2:12872960-12872979 | Msa0057010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 12870637 | 12876524 | 12870637 | ID=Msa0057010;Name=Msa0057010 |
| chr1_2 | mRNA | 12870637 | 12876524 | 12870637 | ID=Msa0057010-mRNA-1;Parent=Msa0057010;Name=Msa0057010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|1|1|6|331|338 |
| chr1_2 | exon | 12870637 | 12870963 | 12870637 | ID=Msa0057010-mRNA-1:exon:4981;Parent=Msa0057010-mRNA-1 |
| chr1_2 | exon | 12873443 | 12873572 | 12873443 | ID=Msa0057010-mRNA-1:exon:4982;Parent=Msa0057010-mRNA-1 |
| chr1_2 | exon | 12874390 | 12874549 | 12874390 | ID=Msa0057010-mRNA-1:exon:4983;Parent=Msa0057010-mRNA-1 |
| chr1_2 | exon | 12875255 | 12875330 | 12875255 | ID=Msa0057010-mRNA-1:exon:4984;Parent=Msa0057010-mRNA-1 |
| chr1_2 | exon | 12875459 | 12875584 | 12875459 | ID=Msa0057010-mRNA-1:exon:4985;Parent=Msa0057010-mRNA-1 |
| chr1_2 | exon | 12875900 | 12876524 | 12875900 | ID=Msa0057010-mRNA-1:exon:4986;Parent=Msa0057010-mRNA-1 |
| chr1_2 | five_prime_UTR | 12870637 | 12870732 | 12870637 | ID=Msa0057010-mRNA-1:five_prime_utr;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12870733 | 12870963 | 12870733 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12873443 | 12873572 | 12873443 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12874390 | 12874549 | 12874390 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12875255 | 12875330 | 12875255 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12875459 | 12875584 | 12875459 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | CDS | 12875900 | 12876193 | 12875900 | ID=Msa0057010-mRNA-1:cds;Parent=Msa0057010-mRNA-1 |
| chr1_2 | three_prime_UTR | 12876194 | 12876524 | 12876194 | ID=Msa0057010-mRNA-1:three_prime_utr;Parent=Msa0057010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
