AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008520 MtrunA17_Chr1g0147421 95.304 362 9 4 1 355 1 361 0.0 704
Msa0008520 MtrunA17_Chr3g0139331 59.229 363 107 15 17 355 1 346 1.32e-114 336
Msa0008520 MtrunA17_Chr6g0484441 72.500 160 35 4 24 178 2 157 3.52e-75 235
Msa0008520 MtrunA17_Chr2g0316971 69.677 155 38 3 27 173 23 176 1.59e-73 233
Msa0008520 MtrunA17_Chr4g0060931 62.941 170 52 4 17 178 7 173 3.92e-70 223
Msa0008520 MtrunA17_Chr3g0091921 62.500 168 51 5 20 178 8 172 2.05e-68 217
Msa0008520 MtrunA17_Chr6g0461661 55.330 197 72 5 27 208 18 213 2.95e-66 214
Msa0008520 MtrunA17_Chr7g0253011 61.404 171 55 4 27 187 17 186 7.27e-66 213
Msa0008520 MtrunA17_Chr6g0453451 54.146 205 74 7 6 202 3 195 1.66e-65 210
Msa0008520 MtrunA17_Chr3g0144271 61.146 157 52 2 1 152 1 153 2.52e-61 202
Msa0008520 MtrunA17_Chr7g0217721 56.471 170 50 4 30 178 22 188 4.09e-57 189
Msa0008520 MtrunA17_Chr2g0312321 55.090 167 61 5 24 182 8 168 3.59e-55 182
Msa0008520 MtrunA17_Chr1g0183741 50.314 159 70 3 19 172 2 156 4.06e-53 176
Msa0008520 MtrunA17_Chr7g0261411 50.318 157 69 3 19 170 2 154 2.44e-51 172
Msa0008520 MtrunA17_Chr7g0217711 61.481 135 44 3 30 159 22 153 1.46e-50 166
Msa0008520 MtrunA17_Chr4g0017921 56.494 154 54 5 27 172 8 156 3.62e-50 171
Msa0008520 MtrunA17_Chr2g0309331 50.610 164 70 5 24 179 7 167 4.32e-50 171
Msa0008520 MtrunA17_Chr3g0124761 50.000 176 69 5 24 187 4 172 1.09e-49 168
Msa0008520 MtrunA17_Chr7g0263931 50.000 166 72 3 17 172 1 165 1.10e-49 169
Msa0008520 MtrunA17_Chr2g0318101 48.276 174 66 4 20 173 8 177 1.13e-49 170
Msa0008520 MtrunA17_Chr7g0252971 49.412 170 62 5 27 176 8 173 5.89e-49 167
Msa0008520 MtrunA17_Chr5g0398971 51.948 154 64 4 27 172 7 158 6.27e-49 167
Msa0008520 MtrunA17_Chr5g0417791 51.899 158 59 5 27 172 3 155 6.64e-49 165
Msa0008520 MtrunA17_Chr4g0018391 53.247 154 60 5 27 172 7 156 9.09e-49 167
Msa0008520 MtrunA17_Chr4g0056541 53.247 154 60 5 27 172 7 156 1.80e-48 167
Msa0008520 MtrunA17_Chr8g0359921 49.689 161 70 4 26 178 13 170 2.47e-48 166
Msa0008520 MtrunA17_Chr2g0318081 51.553 161 65 5 26 178 15 170 2.74e-48 166
Msa0008520 MtrunA17_Chr2g0309891 55.063 158 57 7 26 173 5 158 2.88e-48 166
Msa0008520 MtrunA17_Chr6g0481091 53.205 156 62 5 27 174 6 158 4.21e-48 162
Msa0008520 MtrunA17_Chr4g0047841 44.898 196 65 6 27 190 15 199 1.44e-47 164
Msa0008520 MtrunA17_Chr3g0109821 53.503 157 61 5 26 173 5 158 2.55e-47 170
Msa0008520 MtrunA17_Chr4g0042561 48.555 173 70 6 17 177 1 166 6.58e-47 160
Msa0008520 MtrunA17_Chr5g0405211 49.045 157 68 5 24 172 5 157 6.74e-47 162
Msa0008520 MtrunA17_Chr5g0433781 53.846 156 61 5 26 173 5 157 7.29e-47 168
Msa0008520 MtrunA17_Chr8g0346001 46.154 182 77 5 24 187 12 190 7.74e-47 164
Msa0008520 MtrunA17_Chr1g0200561 46.784 171 79 5 16 178 8 174 1.70e-46 161
Msa0008520 MtrunA17_Chr2g0326361 41.870 246 104 10 26 252 13 238 1.93e-46 160
Msa0008520 MtrunA17_Chr8g0384721 47.977 173 72 6 17 179 1 165 3.32e-46 159
Msa0008520 MtrunA17_Chr7g0214071 50.307 163 64 6 24 177 12 166 1.12e-45 156
Msa0008520 MtrunA17_Chr1g0197361 49.045 157 71 3 29 178 10 164 1.65e-45 164
Msa0008520 MtrunA17_Chr3g0092671 50.318 157 69 3 29 178 7 161 2.37e-45 162
Msa0008520 MtrunA17_Chr8g0372121 45.679 162 76 5 24 177 3 160 3.14e-45 157
Msa0008520 MtrunA17_Chr8g0361731 44.509 173 80 4 16 173 3 174 9.70e-44 155
Msa0008520 MtrunA17_Chr3g0130731 45.810 179 82 6 24 193 4 176 2.29e-43 151
Msa0008520 MtrunA17_Chr5g0417001 43.902 164 77 3 24 173 11 173 8.78e-42 150
Msa0008520 MtrunA17_Chr5g0400461 47.239 163 71 6 26 176 5 164 4.60e-41 147
Msa0008520 MtrunA17_Chr6g0453131 35.656 244 118 7 10 238 2 221 8.30e-41 147
Msa0008520 MtrunA17_Chr3g0128151 50.968 155 65 5 26 172 21 172 4.74e-39 146
Msa0008520 MtrunA17_Chr4g0076731 43.902 164 83 5 23 181 50 209 1.04e-38 142
Msa0008520 MtrunA17_Chr4g0054791 43.646 181 77 7 17 183 1 170 1.27e-38 140
Msa0008520 MtrunA17_Chr1g0197351 48.447 161 66 5 26 172 41 198 1.36e-38 143
Msa0008520 MtrunA17_Chr5g0442771 39.429 175 89 4 21 179 12 185 1.79e-38 139
Msa0008520 MtrunA17_Chr5g0428991 50.000 154 66 5 27 172 25 175 4.97e-38 144
Msa0008520 MtrunA17_Chr3g0130101 46.104 154 72 5 29 174 9 159 4.32e-37 137
Msa0008520 MtrunA17_Chr4g0038751 42.500 160 81 4 24 177 12 166 1.66e-36 134
Msa0008520 MtrunA17_Chr3g0113001 62.162 111 31 3 77 178 14 122 2.52e-36 133
Msa0008520 MtrunA17_Chr3g0128111 48.344 151 67 5 30 172 45 192 6.14e-36 130
Msa0008520 MtrunA17_Chr1g0201021 47.500 160 69 7 29 178 21 175 8.72e-36 137
Msa0008520 MtrunA17_Chr2g0311651 38.624 189 94 6 11 178 5 192 1.96e-35 131
Msa0008520 MtrunA17_Chr8g0385991 39.106 179 87 5 27 190 14 185 6.27e-35 127
Msa0008520 MtrunA17_Chr2g0311661 37.766 188 96 5 11 178 5 191 6.56e-35 129
Msa0008520 MtrunA17_Chr8g0364791 43.506 154 76 5 27 172 6 156 2.09e-34 131
Msa0008520 MtrunA17_Chr3g0131911 38.605 215 103 9 27 225 14 215 4.60e-34 125
Msa0008520 MtrunA17_Chr8g0384201 42.208 154 78 5 27 172 6 156 1.36e-32 127
Msa0008520 MtrunA17_Chr4g0026141 45.185 135 64 4 24 149 2 135 7.01e-32 120
Msa0008520 MtrunA17_Chr4g0050701 41.026 156 77 4 27 173 11 160 7.34e-32 118
Msa0008520 MtrunA17_Chr8g0345671 43.333 150 73 4 27 169 11 155 1.95e-30 119
Msa0008520 MtrunA17_Chr8g0345701 43.243 148 60 4 22 148 2 146 8.03e-30 112
Msa0008520 MtrunA17_Chr2g0321631 43.571 140 62 6 28 154 5 140 8.25e-30 114
Msa0008520 MtrunA17_Chr8g0345711 43.448 145 72 5 25 162 10 151 3.61e-29 110
Msa0008520 MtrunA17_Chr7g0266701 34.946 186 101 7 25 191 2 186 8.12e-29 112
Msa0008520 MtrunA17_Chr8g0345691 44.186 129 64 3 27 148 12 139 6.72e-28 113
Msa0008520 MtrunA17_Chr3g0113031 62.637 91 26 4 94 178 11 99 3.54e-27 108
Msa0008520 MtrunA17_Chr8g0345731 37.662 154 85 5 25 169 22 173 1.14e-25 101
Msa0008520 MtrunA17_Chr8g0345721 34.555 191 79 5 3 148 2 191 2.02e-25 102
Msa0008520 MtrunA17_Chr2g0321741 42.623 122 56 4 56 171 20 133 1.79e-24 102
Msa0008520 MtrunA17_Chr8g0384351 41.096 146 69 5 27 172 10 138 3.32e-23 95.1
Msa0008520 MtrunA17_Chr3g0130321 38.608 158 80 6 27 171 7 160 7.27e-23 95.1
Msa0008520 MtrunA17_Chr7g0243371 51.899 79 33 1 82 155 18 96 4.06e-21 87.4
Msa0008520 MtrunA17_Chr8g0345741 35.664 143 80 4 38 173 2 139 9.30e-21 87.8
Msa0008520 MtrunA17_Chr7g0251661 35.606 132 77 4 24 150 7 135 5.49e-18 80.1
Msa0008520 MtrunA17_Chr7g0251651 34.109 129 77 4 27 150 18 143 9.66e-17 77.8
Msa0008520 MtrunA17_Chr3g0113011 60.000 50 19 1 27 76 19 67 9.35e-16 71.2
Msa0008520 MtrunA17_Chr3g0113041 63.043 46 16 1 31 76 23 67 8.93e-15 68.6
Msa0008520 MtrunA17_Chr7g0251671 31.818 132 82 4 24 150 7 135 5.83e-14 68.9
Msa0008520 MtrunA17_Chr4g0040541 31.138 167 90 6 27 173 48 209 2.29e-12 66.6
Msa0008520 MtrunA17_Chr2g0282871 26.754 228 129 8 27 234 53 262 2.04e-11 64.3
Msa0008520 MtrunA17_Chr7g0274971 28.652 178 111 7 33 199 11 183 5.27e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008520 AT2G24430.2 50.141 355 104 10 21 352 10 314 1.51e-99 297
Msa0008520 AT2G24430.1 50.141 355 104 10 21 352 10 314 1.51e-99 297
Msa0008520 AT3G18400.1 70.625 160 39 3 24 178 2 158 8.01e-76 236
Msa0008520 AT5G53950.1 68.125 160 42 3 25 176 15 173 4.99e-73 231
Msa0008520 AT5G61430.1 64.706 170 49 4 22 183 11 177 2.35e-70 223
Msa0008520 AT3G15170.1 66.875 160 44 3 22 173 15 173 1.05e-69 221
Msa0008520 AT5G07680.2 65.455 165 46 4 27 183 3 164 1.24e-69 221
Msa0008520 AT5G07680.1 61.878 181 54 5 15 183 1 178 1.39e-69 221
Msa0008520 AT1G76420.1 61.078 167 59 2 16 177 11 176 6.24e-67 214
Msa0008520 AT5G39610.1 58.333 192 62 6 22 204 15 197 4.89e-66 210
Msa0008520 AT5G18270.2 66.234 154 42 4 27 172 21 172 6.22e-64 207
Msa0008520 AT5G18270.1 65.584 154 43 4 27 172 21 172 2.40e-63 205
Msa0008520 AT3G29035.1 58.470 183 64 5 8 181 5 184 1.79e-62 202
Msa0008520 AT3G04060.1 58.427 178 64 4 18 187 11 186 1.96e-62 203
Msa0008520 AT4G27410.2 50.877 171 69 6 19 178 2 168 4.54e-53 177
Msa0008520 AT3G12977.1 47.115 208 78 9 24 208 15 213 3.70e-52 174
Msa0008520 AT1G56010.2 38.078 281 145 9 24 285 16 286 7.73e-52 175
Msa0008520 AT4G10350.1 56.129 155 56 5 27 172 9 160 1.10e-50 172
Msa0008520 AT1G33280.1 56.494 154 54 5 27 172 8 156 2.59e-50 170
Msa0008520 AT4G28530.1 41.038 212 101 4 19 210 2 209 3.53e-50 171
Msa0008520 AT3G10500.1 54.658 161 62 5 26 178 8 165 6.17e-50 175
Msa0008520 AT4G27410.3 46.809 188 68 7 19 178 2 185 1.10e-49 169
Msa0008520 AT1G69490.1 51.829 164 66 5 24 177 6 166 2.19e-49 167
Msa0008520 AT3G04070.2 47.541 183 79 5 20 186 3 184 7.55e-49 167
Msa0008520 AT1G65910.1 52.795 161 65 5 26 178 5 162 1.10e-48 173
Msa0008520 AT1G12260.2 51.266 158 65 5 27 176 7 160 1.51e-48 167
Msa0008520 AT1G12260.1 51.266 158 65 5 27 176 7 160 2.09e-48 168
Msa0008520 AT5G04410.1 53.416 161 64 5 26 178 8 165 4.14e-48 171
Msa0008520 AT1G61110.1 49.112 169 66 5 27 177 16 182 4.66e-48 165
Msa0008520 AT1G52890.1 50.943 159 69 4 26 178 13 168 6.06e-48 164
Msa0008520 AT1G01720.1 50.617 162 66 5 27 178 7 164 6.33e-48 164
Msa0008520 AT1G62700.1 51.899 158 64 5 27 176 7 160 9.38e-48 166
Msa0008520 AT1G62700.2 51.899 158 64 5 27 176 7 160 9.38e-48 166
Msa0008520 AT3G17730.1 50.299 167 72 5 27 185 6 169 1.11e-47 162
Msa0008520 AT2G18060.3 33.025 324 182 10 26 325 8 320 1.12e-47 165
Msa0008520 AT2G18060.1 33.025 324 182 10 26 325 8 320 1.12e-47 165
Msa0008520 AT3G15500.1 50.943 159 69 4 26 178 13 168 1.64e-47 163
Msa0008520 AT5G62380.2 50.311 161 68 5 27 179 7 163 2.38e-47 164
Msa0008520 AT5G62380.1 50.311 161 68 5 27 179 7 163 2.38e-47 164
Msa0008520 AT3G03200.1 54.487 156 59 5 26 172 5 157 2.76e-47 167
Msa0008520 AT4G36160.1 50.323 155 65 5 26 172 9 159 3.88e-47 164
Msa0008520 AT4G36160.3 50.323 155 65 5 26 172 9 159 3.88e-47 164
Msa0008520 AT4G36160.2 50.323 155 65 5 26 172 13 163 4.38e-47 164
Msa0008520 AT1G71930.2 48.408 157 69 5 24 172 6 158 5.82e-47 162
Msa0008520 AT1G71930.1 48.408 157 69 5 24 172 6 158 5.82e-47 162
Msa0008520 AT3G04070.1 43.719 199 79 5 20 186 3 200 2.11e-46 162
Msa0008520 AT2G46770.1 47.953 171 64 6 24 172 13 180 3.08e-46 161
Msa0008520 AT5G17260.1 53.846 156 60 5 26 172 5 157 3.22e-46 164
Msa0008520 AT3G61910.1 45.055 182 75 5 24 183 8 186 3.45e-46 160
Msa0008520 AT5G08790.1 49.701 167 69 5 24 179 4 166 5.66e-46 158
Msa0008520 AT1G79580.3 52.258 155 62 5 26 172 16 166 1.94e-45 159
Msa0008520 AT1G79580.5 52.258 155 62 5 26 172 16 166 1.94e-45 159
Msa0008520 AT1G79580.4 52.258 155 62 5 26 172 16 166 1.94e-45 159
Msa0008520 AT1G79580.2 52.258 155 62 5 26 172 16 166 1.94e-45 159
Msa0008520 AT1G79580.1 52.258 155 62 5 26 172 16 166 1.94e-45 159
Msa0008520 AT5G63790.1 50.595 168 66 6 24 179 47 209 2.28e-45 157
Msa0008520 AT5G63790.2 50.595 168 66 6 24 179 57 219 2.49e-45 158
Msa0008520 AT5G66300.1 48.387 155 69 4 26 172 11 162 2.53e-45 157
Msa0008520 AT3G10490.1 51.220 164 66 6 19 172 19 178 3.65e-45 155
Msa0008520 AT3G10480.1 54.430 158 56 7 26 172 26 178 7.03e-45 160
Msa0008520 AT3G10480.2 53.205 156 60 6 26 172 26 177 2.50e-44 158
Msa0008520 AT3G10490.2 51.220 164 66 6 19 172 19 178 5.90e-44 157
Msa0008520 AT4G17980.1 49.686 159 65 5 26 172 5 160 1.69e-43 151
Msa0008520 AT1G77450.1 48.780 164 65 5 27 178 10 166 1.77e-43 151
Msa0008520 AT4G17980.2 49.686 159 65 5 26 172 5 160 4.81e-43 151
Msa0008520 AT3G15510.1 44.910 167 68 4 31 177 21 183 5.16e-43 153
Msa0008520 AT5G46590.1 41.919 198 97 7 26 209 5 198 1.75e-42 149
Msa0008520 AT1G32770.1 42.079 202 92 9 24 206 13 208 2.55e-42 151
Msa0008520 AT5G46590.2 53.788 132 52 4 26 150 5 134 3.45e-42 149
Msa0008520 AT5G13180.1 47.771 157 72 4 27 177 14 166 5.01e-42 147
Msa0008520 AT1G26870.1 42.286 175 85 3 14 173 3 176 5.15e-42 151
Msa0008520 AT5G61430.2 63.478 115 32 3 77 183 2 114 7.59e-42 147
Msa0008520 AT1G54330.1 50.311 161 66 6 26 178 5 159 9.86e-42 148
Msa0008520 AT1G33060.1 50.000 160 69 5 25 176 22 178 1.05e-41 154
Msa0008520 AT1G33060.2 50.000 160 69 5 25 176 22 178 1.13e-41 154
Msa0008520 AT4G35580.1 51.282 156 65 5 25 172 7 159 2.31e-41 152
Msa0008520 AT4G35580.3 51.282 156 65 5 25 172 7 159 2.86e-41 152
Msa0008520 AT5G39820.1 40.426 188 82 5 14 173 7 192 2.90e-41 147
Msa0008520 AT4G35580.2 51.282 156 65 5 25 172 7 159 2.92e-41 152
Msa0008520 AT1G34180.3 48.101 158 71 5 29 178 18 172 5.65e-40 147
Msa0008520 AT1G32870.3 47.802 182 77 7 7 178 29 202 6.28e-40 148
Msa0008520 AT2G02450.2 46.835 158 75 5 29 181 53 206 7.96e-40 145
Msa0008520 AT2G02450.1 46.835 158 75 5 29 181 53 206 8.16e-40 145
Msa0008520 AT1G52880.1 48.447 161 60 5 31 172 21 177 9.31e-40 143
Msa0008520 AT1G32870.1 50.625 160 68 5 27 178 10 166 1.48e-39 147
Msa0008520 AT2G43000.1 43.038 158 80 4 22 172 13 167 1.61e-39 141
Msa0008520 AT1G32870.2 50.625 160 68 5 27 178 10 166 1.61e-39 147
Msa0008520 AT1G34180.1 48.101 158 71 5 29 178 18 172 2.89e-39 147
Msa0008520 AT1G34190.1 48.101 158 71 5 29 178 18 172 2.90e-39 146
Msa0008520 AT3G10480.3 45.550 191 55 8 26 172 26 211 4.96e-39 145
Msa0008520 AT1G34180.4 44.706 170 71 5 29 178 18 184 3.95e-38 142
Msa0008520 AT2G33480.1 48.026 152 67 5 27 172 15 160 6.27e-38 137
Msa0008520 AT5G09330.5 47.436 156 71 5 27 174 6 158 8.49e-38 141
Msa0008520 AT5G09330.2 47.436 156 71 5 27 174 6 158 8.49e-38 141
Msa0008520 AT5G09330.4 47.436 156 71 5 27 174 6 158 8.49e-38 141
Msa0008520 AT5G09330.3 47.436 156 71 5 27 174 6 158 8.49e-38 141
Msa0008520 AT5G09330.1 47.436 156 71 5 27 174 6 158 8.49e-38 141
Msa0008520 AT2G17040.1 42.581 155 78 4 29 177 8 157 8.76e-38 137
Msa0008520 AT1G34180.2 44.706 170 71 5 29 178 18 184 1.57e-37 142
Msa0008520 AT2G33480.2 47.436 156 60 6 27 172 15 158 3.56e-37 135
Msa0008520 AT3G49530.2 47.436 156 72 5 25 172 11 164 3.71e-37 138
Msa0008520 AT5G64060.1 43.590 156 77 5 27 174 6 158 5.33e-37 137
Msa0008520 AT3G49530.1 47.799 159 67 6 25 172 11 164 9.19e-37 138
Msa0008520 AT5G24590.2 42.935 184 90 6 26 196 12 193 2.10e-36 137
Msa0008520 AT1G32510.1 43.976 166 78 5 27 178 6 170 2.67e-36 133
Msa0008520 AT2G27300.1 46.452 155 67 6 26 174 13 157 9.28e-36 133
Msa0008520 AT5G22290.1 43.421 152 72 5 26 171 20 163 2.47e-33 126
Msa0008520 AT3G12910.1 37.297 185 92 7 18 179 9 192 1.02e-32 124
Msa0008520 AT1G56010.1 35.965 228 117 9 77 285 2 219 3.72e-32 121
Msa0008520 AT4G28530.2 44.853 136 55 2 19 134 2 137 3.46e-31 120
Msa0008520 AT3G12977.2 45.806 155 53 8 77 208 14 160 1.39e-30 116
Msa0008520 AT5G04395.1 43.709 151 65 5 19 150 20 169 3.39e-30 114
Msa0008520 AT3G44290.2 45.238 126 60 4 29 148 16 138 3.75e-30 115
Msa0008520 AT3G44290.1 45.238 126 60 4 29 148 16 138 2.24e-29 115
Msa0008520 AT4G10350.2 53.211 109 40 4 73 172 7 113 5.03e-29 114
Msa0008520 AT5G64530.1 37.288 177 84 6 27 186 3 169 4.70e-28 108
Msa0008520 AT5G64530.2 45.238 126 57 4 27 150 3 118 8.54e-28 107
Msa0008520 AT3G44350.2 34.940 166 96 4 25 179 3 167 9.04e-25 101
Msa0008520 AT4G01550.1 38.411 151 81 4 30 172 7 153 1.27e-24 104
Msa0008520 AT4G01520.1 34.239 184 107 6 28 201 5 184 6.55e-24 100
Msa0008520 AT3G44350.1 37.762 143 79 3 25 158 3 144 3.47e-23 94.7
Msa0008520 AT4G01540.4 35.329 167 94 6 30 186 7 169 6.10e-23 99.0
Msa0008520 AT4G01540.2 34.731 167 95 6 30 186 7 169 1.01e-22 99.0
Msa0008520 AT4G01540.3 35.329 167 94 6 30 186 7 169 1.05e-22 99.0
Msa0008520 AT4G01540.1 35.329 167 94 6 30 186 7 169 1.48e-22 99.0
Msa0008520 AT5G22380.1 39.394 132 63 5 30 148 8 135 3.87e-22 94.0
Msa0008520 AT1G02230.1 41.538 130 64 6 28 148 4 130 2.70e-21 94.0
Msa0008520 AT3G10490.4 56.962 79 30 2 96 172 2 78 8.10e-21 92.4
Msa0008520 AT3G10490.3 56.962 79 30 2 96 172 2 78 8.10e-21 92.4
Msa0008520 AT2G33480.3 50.000 96 40 3 83 172 10 103 8.93e-21 89.7
Msa0008520 AT3G04420.2 37.226 137 76 4 28 156 4 138 2.47e-20 90.1
Msa0008520 AT3G04420.1 38.346 133 72 4 28 152 4 134 4.01e-20 90.5
Msa0008520 AT2G18060.2 32.867 143 90 3 101 240 2 141 2.40e-19 87.0
Msa0008520 AT1G01010.1 38.168 131 69 5 30 148 6 136 4.35e-18 85.5
Msa0008520 AT1G02250.1 36.154 130 71 5 28 148 4 130 1.28e-17 83.6
Msa0008520 AT3G04430.1 34.000 150 80 5 33 164 6 154 4.28e-17 79.3
Msa0008520 AT2G43000.2 41.176 85 46 2 90 172 7 89 5.64e-17 79.0
Msa0008520 AT1G02220.1 35.659 129 70 5 28 148 4 127 2.72e-16 79.7
Msa0008520 AT5G50820.1 32.624 141 73 5 27 157 17 145 3.06e-16 76.6
Msa0008520 AT5G14000.1 33.750 160 91 7 27 178 15 167 4.58e-15 73.6
Msa0008520 AT5G22290.2 48.571 70 29 2 102 171 2 64 4.26e-14 71.6
Msa0008520 AT5G14000.2 33.571 140 81 5 27 159 15 149 5.05e-14 69.3
Msa0008520 AT4G28500.1 29.255 188 106 7 27 193 59 240 6.56e-12 66.2
Msa0008520 AT3G56530.1 32.450 151 85 6 23 162 48 192 1.22e-11 65.5
Msa0008520 AT3G55210.1 28.235 170 99 6 26 177 10 174 1.24e-11 65.1
Msa0008520 AT1G28470.1 30.488 164 90 5 26 170 76 234 1.54e-11 65.1

Find 95 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1_1:+12222097 Msa0008520:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1_1:+12221956 Msa0008520:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1_1:-12222072 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1_1:-12220738 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1_1:-12220744 None:intergenic
CAACAATGATGCAGCATTTA+GGG 0.296732 1_1:+12221957 Msa0008520:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1_1:+12219667 Msa0008520:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1_1:+12222174 Msa0008520:CDS
GTGTGGATCTTGATCATTAC+TGG 0.343277 1_1:+12222356 Msa0008520:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1_1:+12222115 Msa0008520:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1_1:+12220625 Msa0008520:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1_1:+12220573 Msa0008520:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1_1:+12222259 Msa0008520:CDS
GTACAATATGCAGGGTACTA+TGG 0.388563 1_1:+12222327 Msa0008520:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1_1:+12222253 Msa0008520:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1_1:+12219845 Msa0008520:CDS
GACTGCTCTTGTAAGATTTG+AGG 0.407771 1_1:-12221870 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1_1:-12222110 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1_1:+12220646 Msa0008520:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1_1:+12222262 Msa0008520:CDS
CTTGTAAGATTTGAGGAAGA+AGG 0.437392 1_1:-12221863 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1_1:+12222073 Msa0008520:CDS
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1_1:+12219661 Msa0008520:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1_1:+12222305 Msa0008520:CDS
TACAGTATTAATCTAGAAGT+TGG 0.456693 1_1:+12221902 Msa0008520:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1_1:-12222089 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1_1:-12222071 None:intergenic
ACTTCTAGATTAATACTGTA+AGG 0.463803 1_1:-12221899 None:intergenic
AGAGTGTTCCGCAAGAGTGC+AGG 0.467497 1_1:+12221827 Msa0008520:CDS
TTCTTATACTGGATTTGGAA+TGG 0.468387 1_1:-12220733 None:intergenic
GGGCTTAATTTGAATCTTGG+AGG 0.468716 1_1:+12222118 Msa0008520:CDS
TGGCAATAGGTACAATATGC+AGG 0.471195 1_1:+12222318 Msa0008520:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1_1:+12219673 Msa0008520:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1_1:+12221795 Msa0008520:intron
AGTTATATAATATACCTTGT+TGG 0.483224 1_1:-12220756 None:intergenic
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1_1:-12222175 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1_1:+12219657 Msa0008520:CDS
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1_1:+12220690 Msa0008520:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1_1:-12219729 None:intergenic
GATGACTTCGCTTACTTGCA+TGG 0.492068 1_1:-12219459 None:intergenic
CCTAAATGCTGCATCATTGT+TGG 0.501547 1_1:-12221956 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1_1:+12221796 Msa0008520:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1_1:+12220484 Msa0008520:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1_1:+12219834 Msa0008520:CDS
GGAAGGAACTCGTGAGAAAG+AGG 0.513889 1_1:+12219694 Msa0008520:CDS
TGTACCTATTGCCATGAGTA+GGG 0.521891 1_1:-12222309 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1_1:+12222254 Msa0008520:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1_1:+12220498 Msa0008520:CDS
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1_1:+12222265 Msa0008520:CDS
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1_1:-12219721 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1_1:-12222310 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1_1:-12222055 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1_1:+12220566 Msa0008520:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1_1:-12219720 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1_1:+12222205 Msa0008520:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.549436 1_1:-12221950 None:intergenic
GAGAAGGATTCACCATTTCA+GGG 0.553123 1_1:+12222098 Msa0008520:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1_1:-12221835 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1_1:+12222082 Msa0008520:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1_1:-12221953 None:intergenic
TTGTAAGATTTGAGGAAGAA+GGG 0.560765 1_1:-12221862 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1_1:-12222242 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1_1:-12222212 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1_1:-12222169 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1_1:-12219728 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1_1:+12220485 Msa0008520:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1_1:+12219677 Msa0008520:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1_1:-12222382 None:intergenic
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1_1:+12219835 Msa0008520:CDS
GTAAGTGATGAGCTCTTCAT+CGG 0.580741 1_1:-12219750 None:intergenic
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1_1:-12220600 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1_1:+12220584 Msa0008520:CDS
ACTACAGAAGTTCTAAGAGC+TGG 0.584255 1_1:+12222028 Msa0008520:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1_1:+12219710 Msa0008520:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1_1:+12222076 Msa0008520:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1_1:-12222243 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1_1:+12222298 Msa0008520:CDS
GGCATATTATTATTAAAGCT+AGG 0.598474 1_1:-12221929 None:intergenic
AGTGTTACATCAGAATTGGT+TGG 0.599286 1_1:+12220629 Msa0008520:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1_1:-12222088 None:intergenic
GTGATGAGCTCTTCATCGGT+AGG 0.601835 1_1:-12219746 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1_1:+12220674 Msa0008520:CDS
ATATTCATGCATGACCCAGT+TGG 0.607778 1_1:-12220705 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1_1:+12222319 Msa0008520:CDS
CAAAATAGTTTGTGATGACG+TGG 0.610809 1_1:-12222143 None:intergenic
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1_1:-12222379 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1_1:+12220585 Msa0008520:CDS
GGGTACTATGGAAAATTGTG+TGG 0.654095 1_1:+12222339 Msa0008520:CDS
ATATTATTATTAAAGCTAGG+AGG 0.657871 1_1:-12221926 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1_1:+12221799 Msa0008520:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1_1:+12220742 Msa0008520:CDS
ATAGAGCTGAAAATGAGTTG+CGG 0.679738 1_1:-12221987 None:intergenic
GAAAACCACAGGGAAAGACA+AGG 0.680177 1_1:+12220595 Msa0008520:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1_1:+12220691 Msa0008520:CDS
GGATGAAATCGAAATCCGGG+AGG 0.762260 1_1:-12219725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_1:12219966-12219985 None:intergenic 0.0%
!! TTTATAAAAACAAAAAACTA+GGG + chr1_1:12220109-12220128 Msa0008520:intron 10.0%
!! AGAAAAATTAAAATTAGTTA+TGG + chr1_1:12220205-12220224 Msa0008520:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG + chr1_1:12220403-12220422 Msa0008520:intron 10.0%
!! ATGAAAAAAATTATGATAAT+AGG + chr1_1:12220828-12220847 Msa0008520:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG + chr1_1:12220829-12220848 Msa0008520:intron 10.0%
!! AAATTTAAAGATGTATAATA+GGG - chr1_1:12220861-12220880 None:intergenic 10.0%
!! AAAATTTAAAGATGTATAAT+AGG - chr1_1:12220862-12220881 None:intergenic 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG + chr1_1:12221241-12221260 Msa0008520:intron 10.0%
!!! TCAAAAATTTAAACTTTTTA+TGG + chr1_1:12221455-12221474 Msa0008520:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG + chr1_1:12221456-12221475 Msa0008520:intron 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG + chr1_1:12221457-12221476 Msa0008520:intron 10.0%
!! GGTTAAGAAAATTAAATATA+GGG - chr1_1:12219539-12219558 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG - chr1_1:12219560-12219579 None:intergenic 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG - chr1_1:12219561-12219580 None:intergenic 15.0%
!!! TTTATACATGCTTTTAAATT+TGG + chr1_1:12219560-12219579 Msa0008520:intron 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG - chr1_1:12219932-12219951 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG - chr1_1:12220106-12220125 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG + chr1_1:12220108-12220127 Msa0008520:intron 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG - chr1_1:12220351-12220370 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG + chr1_1:12220358-12220377 Msa0008520:intron 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG - chr1_1:12221112-12221131 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG - chr1_1:12221113-12221132 None:intergenic 15.0%
!!! ATTTTAGTTTCTTAAACTTT+TGG + chr1_1:12221278-12221297 Msa0008520:intron 15.0%
!!! TAACGAATAGAATTTTTTTT+AGG + chr1_1:12221427-12221446 Msa0008520:intron 15.0%
!! GGGTTAAGAAAATTAAATAT+AGG - chr1_1:12219540-12219559 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG - chr1_1:12219933-12219952 None:intergenic 20.0%
!! TTATGTAAAATTTATAGGGA+AGG + chr1_1:12220475-12220494 Msa0008520:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG + chr1_1:12220659-12220678 Msa0008520:CDS 20.0%
!! AGTTATATAATATACCTTGT+TGG - chr1_1:12220759-12220778 None:intergenic 20.0%
!! TTATTCAGACTATTATAAGA+TGG - chr1_1:12221016-12221035 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG - chr1_1:12221051-12221070 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG - chr1_1:12221082-12221101 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG + chr1_1:12221323-12221342 Msa0008520:intron 20.0%
!! AATTCATTTCTTAAACTTGT+GGG + chr1_1:12221324-12221343 Msa0008520:intron 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG - chr1_1:12221541-12221560 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG - chr1_1:12221582-12221601 None:intergenic 20.0%
!! ATATTATTATTAAAGCTAGG+AGG - chr1_1:12221929-12221948 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG + chr1_1:12222254-12222273 Msa0008520:CDS 20.0%
!! AATAATAATAACTTAGGGTT+TGG + chr1_1:12222259-12222278 Msa0008520:CDS 20.0%
!! AATTTTACATGCAAAGCAAT+AGG + chr1_1:12219803-12219822 Msa0008520:CDS 25.0%
!! TCCAGGTAAAATTTTATGTA+TGG + chr1_1:12219862-12219881 Msa0008520:intron 25.0%
!! TCCATACATAAAATTTTACC+TGG - chr1_1:12219866-12219885 None:intergenic 25.0%
!! TTTTATAAAGCATGGATGAA+AGG - chr1_1:12220098-12220117 None:intergenic 25.0%
! AAGATGAAAGTCATATATTG+TGG - chr1_1:12220268-12220287 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG - chr1_1:12221101-12221120 None:intergenic 25.0%
!! AAGAGTATATTTGCAAAGTT+GGG - chr1_1:12221157-12221176 None:intergenic 25.0%
!! TAAGAGTATATTTGCAAAGT+TGG - chr1_1:12221158-12221177 None:intergenic 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG + chr1_1:12221252-12221271 Msa0008520:intron 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG + chr1_1:12221253-12221272 Msa0008520:intron 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG - chr1_1:12221577-12221596 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG + chr1_1:12221640-12221659 Msa0008520:intron 25.0%
! ACTTCTAGATTAATACTGTA+AGG - chr1_1:12221902-12221921 None:intergenic 25.0%
! TACAGTATTAATCTAGAAGT+TGG + chr1_1:12221902-12221921 Msa0008520:CDS 25.0%
! GGCATATTATTATTAAAGCT+AGG - chr1_1:12221932-12221951 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG + chr1_1:12222253-12222272 Msa0008520:CDS 25.0%
!! TTTTTGTGTGTTATTCCAGA+AGG + chr1_1:12219631-12219650 Msa0008520:intron 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG + chr1_1:12219657-12219676 Msa0008520:CDS 30.0%
CTTTCATCTTTCTTGTGATA+TGG + chr1_1:12220278-12220297 Msa0008520:intron 30.0%
TCTTTCTTGTGATATGGTTA+AGG + chr1_1:12220284-12220303 Msa0008520:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG - chr1_1:12220736-12220755 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG - chr1_1:12220890-12220909 None:intergenic 30.0%
TTGTAAGATTTGAGGAAGAA+GGG - chr1_1:12221865-12221884 None:intergenic 30.0%
AAATGGGAATATTGATGCAT+TGG - chr1_1:12222058-12222077 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG - chr1_1:12222074-12222093 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG - chr1_1:12222113-12222132 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG + chr1_1:12222262-12222281 Msa0008520:CDS 30.0%
TAACAACTTCTTTGTCCTTC+TGG - chr1_1:12219649-12219668 None:intergenic 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG + chr1_1:12219661-12219680 Msa0008520:CDS 35.0%
TAGCAAAGAAAGGAAGGATT+TGG + chr1_1:12219667-12219686 Msa0008520:CDS 35.0%
AGAAAGGAAGGATTTGGAAA+TGG + chr1_1:12219673-12219692 Msa0008520:CDS 35.0%
AGAGATCGTAAATATCCAAC+AGG + chr1_1:12220536-12220555 Msa0008520:intron 35.0%
ACTAATAGAGCAACAAACAC+TGG + chr1_1:12220566-12220585 Msa0008520:CDS 35.0%
CAACAGTGTTACATCAGAAT+TGG + chr1_1:12220625-12220644 Msa0008520:CDS 35.0%
AGTGTTACATCAGAATTGGT+TGG + chr1_1:12220629-12220648 Msa0008520:CDS 35.0%
! GGTTGGTATGAAGAAAACTT+TGG + chr1_1:12220646-12220665 Msa0008520:CDS 35.0%
! GTTGGTTCTTATACTGGATT+TGG - chr1_1:12220741-12220760 None:intergenic 35.0%
ATCCAGTATAAGAACCAACA+AGG + chr1_1:12220742-12220761 Msa0008520:CDS 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG - chr1_1:12220747-12220766 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG + chr1_1:12220935-12220954 Msa0008520:intron 35.0%
TAAATAGACCTCACACAAAG+TGG - chr1_1:12220982-12221001 None:intergenic 35.0%
AGTCAAAACCGTCATAGTAT+TGG + chr1_1:12221530-12221549 Msa0008520:intron 35.0%
ATGTCGAATATATATGCAGC+AGG + chr1_1:12221787-12221806 Msa0008520:intron 35.0%
TATATATGCAGCAGGATGAA+TGG + chr1_1:12221795-12221814 Msa0008520:intron 35.0%
ATATATGCAGCAGGATGAAT+GGG + chr1_1:12221796-12221815 Msa0008520:intron 35.0%
CTTGTAAGATTTGAGGAAGA+AGG - chr1_1:12221866-12221885 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG + chr1_1:12221957-12221976 Msa0008520:CDS 35.0%
ATAGAGCTGAAAATGAGTTG+CGG - chr1_1:12221990-12222009 None:intergenic 35.0%
! CTAAGGGTGATGATGATAAA+TGG - chr1_1:12222075-12222094 None:intergenic 35.0%
CATTTATCATCATCACCCTT+AGG + chr1_1:12222073-12222092 Msa0008520:CDS 35.0%
! TCAGGGCTTAATTTGAATCT+TGG + chr1_1:12222115-12222134 Msa0008520:CDS 35.0%
! CAAAATAGTTTGTGATGACG+TGG - chr1_1:12222146-12222165 None:intergenic 35.0%
! CGTCATCACAAACTATTTTG+AGG + chr1_1:12222146-12222165 Msa0008520:CDS 35.0%
ATTATTCTCTGCAGCAACAA+GGG - chr1_1:12222245-12222264 None:intergenic 35.0%
TATTATTCTCTGCAGCAACA+AGG - chr1_1:12222246-12222265 None:intergenic 35.0%
AATAATGCAAACCCTACTCA+TGG + chr1_1:12222298-12222317 Msa0008520:CDS 35.0%
AGGAAGGATTTGGAAATGGA+AGG + chr1_1:12219677-12219696 Msa0008520:CDS 40.0%
GTAGGATGAAATCGAAATCC+GGG - chr1_1:12219731-12219750 None:intergenic 40.0%
GGTAGGATGAAATCGAAATC+CGG - chr1_1:12219732-12219751 None:intergenic 40.0%
GTAAGTGATGAGCTCTTCAT+CGG - chr1_1:12219753-12219772 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG + chr1_1:12220484-12220503 Msa0008520:intron 40.0%
TTTATAGGGAAGGCCAAGAT+GGG + chr1_1:12220485-12220504 Msa0008520:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG - chr1_1:12220501-12220520 None:intergenic 40.0%
CCAAGATGGGTACAAAAGAA+TGG + chr1_1:12220498-12220517 Msa0008520:CDS 40.0%
! CTATTAGTTCTCACACCTGT+TGG - chr1_1:12220554-12220573 None:intergenic 40.0%
GAGCAACAAACACTGGATAT+TGG + chr1_1:12220573-12220592 Msa0008520:CDS 40.0%
ACTGGATATTGGAAAACCAC+AGG + chr1_1:12220584-12220603 Msa0008520:CDS 40.0%
CTGGATATTGGAAAACCACA+GGG + chr1_1:12220585-12220604 Msa0008520:CDS 40.0%
TAGAGGAGAGAAAACCAACT+GGG + chr1_1:12220691-12220710 Msa0008520:CDS 40.0%
ATATTCATGCATGACCCAGT+TGG - chr1_1:12220708-12220727 None:intergenic 40.0%
GACTGCTCTTGTAAGATTTG+AGG - chr1_1:12221873-12221892 None:intergenic 40.0%
AAATGCTGCATCATTGTTGG+TGG - chr1_1:12221956-12221975 None:intergenic 40.0%
CCTAAATGCTGCATCATTGT+TGG - chr1_1:12221959-12221978 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG + chr1_1:12221956-12221975 Msa0008520:CDS 40.0%
! GCAACTCATTTTCAGCTCTA+TGG + chr1_1:12221989-12222008 Msa0008520:CDS 40.0%
! CTCATTTTCAGCTCTATGGA+AGG + chr1_1:12221993-12222012 Msa0008520:CDS 40.0%
!! ACTACAGAAGTTCTAAGAGC+TGG + chr1_1:12222028-12222047 Msa0008520:CDS 40.0%
TTATCATCATCACCCTTAGG+AGG + chr1_1:12222076-12222095 Msa0008520:CDS 40.0%
GAGAAGGATTCACCATTTCA+GGG + chr1_1:12222098-12222117 Msa0008520:CDS 40.0%
! GGGCTTAATTTGAATCTTGG+AGG + chr1_1:12222118-12222137 Msa0008520:CDS 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG - chr1_1:12222172-12222191 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG + chr1_1:12222174-12222193 Msa0008520:CDS 40.0%
GCCATAGTATGAGTAGTTGA+TGG - chr1_1:12222178-12222197 None:intergenic 40.0%
ATTTGCACCTGTCATCATGT+TGG - chr1_1:12222215-12222234 None:intergenic 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG + chr1_1:12222265-12222284 Msa0008520:CDS 40.0%
TGTACCTATTGCCATGAGTA+GGG - chr1_1:12222312-12222331 None:intergenic 40.0%
TTGTACCTATTGCCATGAGT+AGG - chr1_1:12222313-12222332 None:intergenic 40.0%
TGGCAATAGGTACAATATGC+AGG + chr1_1:12222318-12222337 Msa0008520:CDS 40.0%
GGCAATAGGTACAATATGCA+GGG + chr1_1:12222319-12222338 Msa0008520:CDS 40.0%
! GTACAATATGCAGGGTACTA+TGG + chr1_1:12222327-12222346 Msa0008520:CDS 40.0%
GGGTACTATGGAAAATTGTG+TGG + chr1_1:12222339-12222358 Msa0008520:CDS 40.0%
GTGTGGATCTTGATCATTAC+TGG + chr1_1:12222356-12222375 Msa0008520:CDS 40.0%
AAATCGAAATCCGGGAGGTA+GGG - chr1_1:12219723-12219742 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG + chr1_1:12219834-12219853 Msa0008520:CDS 45.0%
TCTCAACAAATGCGAGCCAT+GGG + chr1_1:12219835-12219854 Msa0008520:CDS 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG - chr1_1:12219854-12219873 None:intergenic 45.0%
GAAAACCACAGGGAAAGACA+AGG + chr1_1:12220595-12220614 Msa0008520:CDS 45.0%
AATCTCCTTGTCTTTCCCTG+TGG - chr1_1:12220603-12220622 None:intergenic 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG - chr1_1:12220692-12220711 None:intergenic 45.0%
CTAGAGGAGAGAAAACCAAC+TGG + chr1_1:12220690-12220709 Msa0008520:CDS 45.0%
TAGACCTCACACAAAGTGGT+GGG - chr1_1:12220978-12220997 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG - chr1_1:12220979-12220998 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTTTC+TGG - chr1_1:12221723-12221742 None:intergenic 45.0%
GTGAATCCTTCTCCTCCTAA+GGG - chr1_1:12222091-12222110 None:intergenic 45.0%
GGAGAAGGATTCACCATTTC+AGG + chr1_1:12222097-12222116 Msa0008520:CDS 45.0%
TTCAGCTCCAACATGATGAC+AGG + chr1_1:12222205-12222224 Msa0008520:CDS 45.0%
CAAACCCTACTCATGGCAAT+AGG + chr1_1:12222305-12222324 Msa0008520:CDS 45.0%
!! TTTAATTATGTAAAATTTAT+AGG + chr1_1:12220470-12220489 Msa0008520:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG + chr1_1:12220471-12220490 Msa0008520:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG - chr1_1:12221379-12221398 None:intergenic 5.0%
!! TAATAATATATTTAAGAATA+AGG + chr1_1:12221482-12221501 Msa0008520:intron 5.0%
!! AATAATATATTTAAGAATAA+GGG + chr1_1:12221483-12221502 Msa0008520:intron 5.0%
GGAAGGAACTCGTGAGAAAG+AGG + chr1_1:12219694-12219713 Msa0008520:CDS 50.0%
AAAGAGGAAACCCTACCTCC+CGG + chr1_1:12219710-12219729 Msa0008520:CDS 50.0%
GAAATCGAAATCCGGGAGGT+AGG - chr1_1:12219724-12219743 None:intergenic 50.0%
GGATGAAATCGAAATCCGGG+AGG - chr1_1:12219728-12219747 None:intergenic 50.0%
GTGATGAGCTCTTCATCGGT+AGG - chr1_1:12219749-12219768 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG + chr1_1:12220674-12220693 Msa0008520:CDS 50.0%
ATGTCCCACCACTTTGTGTG+AGG + chr1_1:12220971-12220990 Msa0008520:intron 50.0%
CACACACACACACACACACA+TGG + chr1_1:12221727-12221746 Msa0008520:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG + chr1_1:12221799-12221818 Msa0008520:intron 50.0%
TCTTTGCACCTGCACTCTTG+CGG - chr1_1:12221838-12221857 None:intergenic 50.0%
! TGCTGCATCATTGTTGGTGG+TGG - chr1_1:12221953-12221972 None:intergenic 50.0%
TCATCACCCTTAGGAGGAGA+AGG + chr1_1:12222082-12222101 Msa0008520:CDS 50.0%
GGTGAATCCTTCTCCTCCTA+AGG - chr1_1:12222092-12222111 None:intergenic 50.0%
! AGAGTGTTCCGCAAGAGTGC+AGG + chr1_1:12221827-12221846 Msa0008520:CDS 55.0%
TGCGAGCCATGGGAGCTTCC+AGG + chr1_1:12219845-12219864 Msa0008520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12219461 12222393 12219461 ID=Msa0008520;Name=Msa0008520
chr1_1 mRNA 12219461 12222393 12219461 ID=Msa0008520-mRNA-1;Parent=Msa0008520;Name=Msa0008520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.25|0|0.8|0.5|0.4|5|0|355
chr1_1 exon 12219461 12219466 12219461 ID=Msa0008520-mRNA-1:exon:4616;Parent=Msa0008520-mRNA-1
chr1_1 exon 12219650 12219866 12219650 ID=Msa0008520-mRNA-1:exon:4617;Parent=Msa0008520-mRNA-1
chr1_1 exon 12220492 12220542 12220492 ID=Msa0008520-mRNA-1:exon:4618;Parent=Msa0008520-mRNA-1
chr1_1 exon 12220558 12220763 12220558 ID=Msa0008520-mRNA-1:exon:4619;Parent=Msa0008520-mRNA-1
chr1_1 exon 12221806 12222393 12221806 ID=Msa0008520-mRNA-1:exon:4620;Parent=Msa0008520-mRNA-1
chr1_1 CDS 12219461 12219466 12219461 ID=Msa0008520-mRNA-1:cds;Parent=Msa0008520-mRNA-1
chr1_1 CDS 12219650 12219866 12219650 ID=Msa0008520-mRNA-1:cds;Parent=Msa0008520-mRNA-1
chr1_1 CDS 12220492 12220542 12220492 ID=Msa0008520-mRNA-1:cds;Parent=Msa0008520-mRNA-1
chr1_1 CDS 12220558 12220763 12220558 ID=Msa0008520-mRNA-1:cds;Parent=Msa0008520-mRNA-1
chr1_1 CDS 12221806 12222393 12221806 ID=Msa0008520-mRNA-1:cds;Parent=Msa0008520-mRNA-1
Gene Sequence

>Msa0008520

ATGCAAAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACTCGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAGCTCATCACTTACTATCTTGTAAACAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTGTTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCCTCAAATCTTACAAGAGCAGTCATGAATCCTTACAGTATTAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATGCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCCGCAACTCATTTTCAGCTCTATGGAAGGAACTACATCAACACTACAGAAGTTCTAAGAGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGTTCCACGTCATCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGAAAATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>Msa0008520

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSNLTRAVMNPYSINLEVGPPSFNNNMPPPTMMQHLGLDSATHFQLYGRNYINTTEVLRAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMENCVDLDHYWPPSY*