AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056980 MtrunA17_Chr1g0147421 96.409 362 10 3 1 360 1 361 0.0 718
Msa0056980 MtrunA17_Chr3g0139331 60.882 363 106 14 17 360 1 346 5.86e-122 355
Msa0056980 MtrunA17_Chr6g0484441 75.625 160 35 3 24 183 2 157 5.97e-82 252
Msa0056980 MtrunA17_Chr2g0316971 72.903 155 38 2 27 178 23 176 3.70e-80 249
Msa0056980 MtrunA17_Chr4g0060931 65.882 170 52 3 17 183 7 173 8.02e-77 240
Msa0056980 MtrunA17_Chr3g0091921 65.476 168 51 4 20 183 8 172 8.25e-75 233
Msa0056980 MtrunA17_Chr6g0461661 57.868 197 72 4 27 213 18 213 6.54e-73 231
Msa0056980 MtrunA17_Chr7g0253011 64.327 171 55 3 27 192 17 186 1.81e-72 230
Msa0056980 MtrunA17_Chr6g0453451 56.585 205 74 6 6 207 3 195 3.65e-72 227
Msa0056980 MtrunA17_Chr3g0144271 64.331 157 52 1 1 157 1 153 6.65e-68 219
Msa0056980 MtrunA17_Chr7g0217721 59.412 170 50 3 30 183 22 188 9.25e-64 206
Msa0056980 MtrunA17_Chr2g0312321 57.485 167 62 4 24 187 8 168 2.19e-60 196
Msa0056980 MtrunA17_Chr1g0183741 52.830 159 71 2 19 177 2 156 1.95e-58 190
Msa0056980 MtrunA17_Chr7g0217711 63.768 138 47 2 27 164 19 153 3.57e-57 184
Msa0056980 MtrunA17_Chr7g0261411 52.866 157 70 2 19 175 2 154 1.01e-56 186
Msa0056980 MtrunA17_Chr4g0017921 59.740 154 54 4 27 177 8 156 1.05e-56 188
Msa0056980 MtrunA17_Chr2g0309331 53.659 164 70 4 24 184 7 167 1.05e-56 188
Msa0056980 MtrunA17_Chr2g0318101 50.575 174 67 3 20 178 8 177 2.07e-55 185
Msa0056980 MtrunA17_Chr4g0018391 56.494 154 60 4 27 177 7 156 2.08e-55 185
Msa0056980 MtrunA17_Chr7g0263931 52.410 166 73 2 17 177 1 165 2.20e-55 184
Msa0056980 MtrunA17_Chr3g0124761 52.273 176 70 4 24 192 4 172 2.79e-55 182
Msa0056980 MtrunA17_Chr4g0056541 56.494 154 60 4 27 177 7 156 5.45e-55 184
Msa0056980 MtrunA17_Chr7g0252971 51.765 170 63 4 27 181 8 173 9.27e-55 183
Msa0056980 MtrunA17_Chr5g0398971 54.545 154 65 3 27 177 7 158 1.06e-54 183
Msa0056980 MtrunA17_Chr5g0417791 54.430 158 60 4 27 177 3 155 1.37e-54 180
Msa0056980 MtrunA17_Chr8g0359921 52.174 161 71 3 26 183 13 170 4.87e-54 181
Msa0056980 MtrunA17_Chr2g0318081 54.037 161 66 4 26 183 15 170 4.98e-54 181
Msa0056980 MtrunA17_Chr2g0309891 57.595 158 58 6 26 178 5 158 6.83e-54 181
Msa0056980 MtrunA17_Chr6g0481091 55.769 156 63 4 27 179 6 158 7.42e-54 177
Msa0056980 MtrunA17_Chr5g0405211 52.229 157 68 4 24 177 5 157 1.51e-53 180
Msa0056980 MtrunA17_Chr4g0047841 46.939 196 66 5 27 195 15 199 2.61e-53 179
Msa0056980 MtrunA17_Chr8g0346001 48.901 182 77 4 24 192 12 190 2.75e-53 181
Msa0056980 MtrunA17_Chr1g0200561 49.708 171 79 4 16 183 8 174 6.36e-53 178
Msa0056980 MtrunA17_Chr3g0109821 56.051 157 62 4 26 178 5 158 7.49e-53 185
Msa0056980 MtrunA17_Chr4g0042561 50.867 173 71 5 17 182 1 166 1.22e-52 175
Msa0056980 MtrunA17_Chr5g0433781 56.410 156 62 4 26 178 5 157 1.53e-52 184
Msa0056980 MtrunA17_Chr2g0326361 43.496 246 105 9 26 257 13 238 2.40e-52 176
Msa0056980 MtrunA17_Chr8g0384721 50.289 173 73 5 17 184 1 165 6.96e-52 174
Msa0056980 MtrunA17_Chr8g0372121 48.765 162 76 4 24 182 3 160 7.93e-52 174
Msa0056980 MtrunA17_Chr7g0214071 52.761 163 65 5 24 182 12 166 2.66e-51 171
Msa0056980 MtrunA17_Chr3g0092671 52.866 157 70 2 29 183 7 161 3.00e-50 176
Msa0056980 MtrunA17_Chr3g0130731 48.045 179 83 5 24 198 4 176 6.08e-49 166
Msa0056980 MtrunA17_Chr1g0197361 50.318 157 74 2 29 183 10 164 9.03e-49 172
Msa0056980 MtrunA17_Chr8g0361731 45.665 173 83 3 16 178 3 174 4.00e-47 164
Msa0056980 MtrunA17_Chr5g0400461 49.693 163 72 5 26 181 5 164 9.52e-47 162
Msa0056980 MtrunA17_Chr5g0417001 45.122 164 80 2 24 178 11 173 3.61e-45 159
Msa0056980 MtrunA17_Chr3g0128151 53.548 155 66 4 26 177 21 172 1.83e-44 161
Msa0056980 MtrunA17_Chr4g0054791 45.856 181 78 6 17 188 1 170 2.11e-44 155
Msa0056980 MtrunA17_Chr6g0453131 35.907 259 129 7 10 255 2 236 2.95e-44 157
Msa0056980 MtrunA17_Chr5g0428991 52.597 154 67 4 27 177 25 175 1.37e-43 159
Msa0056980 MtrunA17_Chr3g0113001 66.667 111 31 2 77 183 14 122 6.10e-43 150
Msa0056980 MtrunA17_Chr4g0076731 45.732 164 85 4 23 186 50 209 7.10e-43 154
Msa0056980 MtrunA17_Chr1g0197351 50.311 161 68 4 26 177 41 198 1.66e-42 154
Msa0056980 MtrunA17_Chr3g0130101 48.701 154 73 4 29 179 9 159 5.29e-42 150
Msa0056980 MtrunA17_Chr5g0442771 40.571 175 92 3 21 184 12 185 5.36e-42 149
Msa0056980 MtrunA17_Chr1g0201021 50.000 160 70 6 29 183 21 175 3.68e-41 152
Msa0056980 MtrunA17_Chr3g0128111 50.331 151 69 4 30 177 45 192 4.51e-41 144
Msa0056980 MtrunA17_Chr4g0038751 43.750 160 84 3 24 182 12 166 4.44e-40 143
Msa0056980 MtrunA17_Chr2g0311651 39.683 189 97 5 11 183 5 192 7.15e-39 140
Msa0056980 MtrunA17_Chr8g0364791 45.455 154 78 4 27 177 6 156 1.82e-38 142
Msa0056980 MtrunA17_Chr2g0311661 38.830 188 99 4 11 183 5 191 2.59e-38 138
Msa0056980 MtrunA17_Chr8g0385991 36.652 221 116 6 27 230 14 227 9.88e-38 135
Msa0056980 MtrunA17_Chr3g0131911 39.070 215 107 8 27 230 14 215 8.82e-37 133
Msa0056980 MtrunA17_Chr8g0384201 43.506 154 81 4 27 177 6 156 2.11e-36 137
Msa0056980 MtrunA17_Chr4g0026141 45.185 135 69 2 24 154 2 135 1.80e-34 127
Msa0056980 MtrunA17_Chr8g0345671 44.667 150 76 3 27 174 11 155 5.66e-34 129
Msa0056980 MtrunA17_Chr8g0345711 43.448 145 77 3 25 167 10 151 2.01e-32 119
Msa0056980 MtrunA17_Chr3g0113031 62.376 101 30 4 89 183 1 99 2.55e-32 122
Msa0056980 MtrunA17_Chr2g0321631 42.857 140 68 4 28 159 5 140 8.93e-32 120
Msa0056980 MtrunA17_Chr8g0345691 45.736 129 67 2 27 153 12 139 2.89e-31 122
Msa0056980 MtrunA17_Chr4g0050701 39.752 161 77 4 27 178 11 160 4.49e-31 116
Msa0056980 MtrunA17_Chr7g0266701 35.484 186 105 6 25 196 2 186 1.38e-30 117
Msa0056980 MtrunA17_Chr2g0321741 45.902 122 57 3 56 176 20 133 4.07e-30 118
Msa0056980 MtrunA17_Chr8g0345701 43.243 148 65 4 22 153 2 146 7.52e-30 112
Msa0056980 MtrunA17_Chr8g0345731 38.961 154 88 4 25 174 22 173 2.47e-29 111
Msa0056980 MtrunA17_Chr8g0345721 35.602 191 82 4 3 153 2 191 1.69e-28 110
Msa0056980 MtrunA17_Chr7g0243371 55.696 79 35 0 82 160 18 96 2.09e-25 99.4
Msa0056980 MtrunA17_Chr8g0345741 37.063 143 83 3 38 178 2 139 8.55e-24 95.9
Msa0056980 MtrunA17_Chr8g0384351 40.397 151 68 5 27 177 10 138 1.10e-22 94.0
Msa0056980 MtrunA17_Chr3g0130321 37.423 163 80 6 27 176 7 160 1.67e-21 91.3
Msa0056980 MtrunA17_Chr7g0251661 35.821 134 79 5 24 155 7 135 1.82e-18 81.6
Msa0056980 MtrunA17_Chr7g0251651 34.351 131 79 5 27 155 18 143 2.31e-17 79.3
Msa0056980 MtrunA17_Chr3g0113011 60.000 50 19 1 27 76 19 67 9.29e-16 71.6
Msa0056980 MtrunA17_Chr4g0046431 29.952 207 123 8 27 218 68 267 2.09e-15 76.3
Msa0056980 MtrunA17_Chr3g0113041 63.043 46 16 1 31 76 23 67 9.20e-15 68.6
Msa0056980 MtrunA17_Chr7g0251671 31.343 134 85 4 24 155 7 135 1.71e-14 70.5
Msa0056980 MtrunA17_Chr2g0324961 34.731 167 82 8 27 175 49 206 9.11e-14 70.9
Msa0056980 MtrunA17_Chr7g0274971 30.726 179 111 7 33 204 11 183 3.54e-13 68.2
Msa0056980 MtrunA17_Chr1g0198751 28.426 197 112 8 27 201 58 247 5.16e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056980 AT2G24430.2 51.404 356 103 10 21 357 10 314 2.64e-106 315
Msa0056980 AT2G24430.1 51.404 356 103 10 21 357 10 314 2.64e-106 315
Msa0056980 AT3G18400.1 73.750 160 39 2 24 183 2 158 1.56e-82 254
Msa0056980 AT5G53950.1 71.250 160 42 2 25 181 15 173 1.18e-79 248
Msa0056980 AT5G61430.1 67.647 170 49 3 22 188 11 177 6.50e-77 240
Msa0056980 AT3G15170.1 70.000 160 44 2 22 178 15 173 2.59e-76 238
Msa0056980 AT5G07680.2 68.485 165 46 3 27 188 3 164 3.51e-76 238
Msa0056980 AT5G07680.1 64.641 181 54 4 15 188 1 178 3.72e-76 238
Msa0056980 AT1G76420.1 64.072 167 59 1 16 182 11 176 1.82e-73 231
Msa0056980 AT5G39610.1 60.938 192 62 5 22 209 15 197 1.29e-72 228
Msa0056980 AT5G18270.2 69.481 154 42 3 27 177 21 172 1.73e-70 224
Msa0056980 AT5G18270.1 68.831 154 43 3 27 177 21 172 6.05e-70 222
Msa0056980 AT3G29035.1 61.202 183 64 4 8 186 5 184 4.52e-69 219
Msa0056980 AT3G04060.1 61.236 178 64 3 18 192 11 186 4.78e-69 220
Msa0056980 AT4G27410.2 53.216 171 70 5 19 183 2 168 8.77e-59 192
Msa0056980 AT3G12977.1 49.038 208 79 8 24 213 15 213 1.01e-57 189
Msa0056980 AT4G10350.1 59.355 155 56 4 27 177 9 160 2.44e-57 190
Msa0056980 AT1G33280.1 59.740 154 54 4 27 177 8 156 7.09e-57 187
Msa0056980 AT1G56010.2 39.502 281 146 8 24 290 16 286 7.16e-57 188
Msa0056980 AT4G28530.1 42.925 212 102 3 19 215 2 209 1.13e-55 186
Msa0056980 AT4G27410.3 48.936 188 69 6 19 183 2 185 2.22e-55 184
Msa0056980 AT1G12260.2 54.430 158 65 4 27 181 7 160 3.20e-55 184
Msa0056980 AT1G12260.1 54.430 158 65 4 27 181 7 160 4.62e-55 186
Msa0056980 AT1G69490.1 54.268 164 67 4 24 182 6 166 4.85e-55 182
Msa0056980 AT3G04070.2 49.727 183 80 4 20 191 3 184 1.51e-54 182
Msa0056980 AT1G62700.1 55.063 158 64 4 27 181 7 160 2.05e-54 184
Msa0056980 AT1G62700.2 55.063 158 64 4 27 181 7 160 2.05e-54 184
Msa0056980 AT1G65910.1 55.280 161 66 4 26 183 5 162 2.18e-54 189
Msa0056980 AT3G10500.1 56.522 161 64 4 26 183 8 165 2.62e-54 187
Msa0056980 AT2G18060.3 34.568 324 182 9 26 330 8 320 3.20e-54 182
Msa0056980 AT2G18060.1 34.568 324 182 9 26 330 8 320 3.20e-54 182
Msa0056980 AT5G62380.2 53.416 161 68 4 27 184 7 163 8.83e-54 181
Msa0056980 AT5G62380.1 53.416 161 68 4 27 184 7 163 8.83e-54 181
Msa0056980 AT1G61110.1 51.479 169 67 4 27 182 16 182 1.02e-53 180
Msa0056980 AT1G52890.1 53.459 159 70 3 26 183 13 168 1.03e-53 180
Msa0056980 AT4G36160.1 53.548 155 65 4 26 177 9 159 1.10e-53 181
Msa0056980 AT4G36160.3 53.548 155 65 4 26 177 9 159 1.10e-53 181
Msa0056980 AT4G36160.2 53.548 155 65 4 26 177 13 163 1.18e-53 181
Msa0056980 AT1G01720.1 53.086 162 67 4 27 183 7 164 1.57e-53 178
Msa0056980 AT1G71930.2 51.592 157 69 4 24 177 6 158 1.77e-53 179
Msa0056980 AT1G71930.1 51.592 157 69 4 24 177 6 158 1.77e-53 179
Msa0056980 AT3G17730.1 52.695 167 73 4 27 190 6 169 1.79e-53 177
Msa0056980 AT3G15500.1 53.459 159 70 3 26 183 13 168 2.81e-53 179
Msa0056980 AT3G03200.1 57.051 156 60 4 26 177 5 157 5.48e-53 182
Msa0056980 AT2G46770.1 50.877 171 64 5 24 177 13 180 7.33e-53 179
Msa0056980 AT3G61910.1 47.802 182 75 4 24 188 8 186 7.81e-53 178
Msa0056980 AT5G04410.1 55.280 161 66 4 26 183 8 165 1.93e-52 182
Msa0056980 AT3G04070.1 45.729 199 80 4 20 191 3 200 3.87e-52 177
Msa0056980 AT1G79580.3 55.484 155 62 4 26 177 16 166 6.92e-52 176
Msa0056980 AT1G79580.5 55.484 155 62 4 26 177 16 166 6.92e-52 176
Msa0056980 AT1G79580.4 55.484 155 62 4 26 177 16 166 6.92e-52 176
Msa0056980 AT1G79580.2 55.484 155 62 4 26 177 16 166 6.92e-52 176
Msa0056980 AT1G79580.1 55.484 155 62 4 26 177 16 166 6.92e-52 176
Msa0056980 AT5G17260.1 56.410 156 61 4 26 177 5 157 7.22e-52 179
Msa0056980 AT5G66300.1 51.613 155 69 3 26 177 11 162 8.19e-52 174
Msa0056980 AT5G08790.1 52.096 167 70 4 24 184 4 166 1.15e-51 173
Msa0056980 AT5G63790.1 52.976 168 67 5 24 184 47 209 4.21e-51 173
Msa0056980 AT5G63790.2 52.976 168 67 5 24 184 57 219 4.33e-51 173
Msa0056980 AT3G10490.1 53.049 164 68 5 19 177 19 178 1.49e-49 166
Msa0056980 AT3G10480.1 56.329 158 58 6 26 177 26 178 3.33e-49 171
Msa0056980 AT1G77450.1 51.220 164 66 4 27 183 10 166 3.94e-49 166
Msa0056980 AT1G32770.1 45.226 199 89 8 27 211 16 208 6.94e-49 168
Msa0056980 AT3G10480.2 55.128 156 62 5 26 177 26 177 1.11e-48 170
Msa0056980 AT3G15510.1 47.305 167 69 3 31 182 21 183 1.26e-48 168
Msa0056980 AT5G61430.2 67.826 115 32 2 77 188 2 114 1.82e-48 165
Msa0056980 AT5G46590.1 43.939 198 98 6 26 214 5 198 3.53e-48 164
Msa0056980 AT3G10490.2 53.049 164 68 5 19 177 19 178 4.29e-48 169
Msa0056980 AT4G17980.1 51.572 159 67 4 26 177 5 160 5.58e-48 163
Msa0056980 AT5G46590.2 56.818 132 53 3 26 155 5 134 6.83e-48 164
Msa0056980 AT4G17980.2 51.572 159 67 4 26 177 5 160 1.25e-47 163
Msa0056980 AT1G54330.1 52.795 161 67 5 26 183 5 159 1.63e-47 163
Msa0056980 AT5G13180.1 50.318 157 73 3 27 182 14 166 1.84e-47 161
Msa0056980 AT1G33060.2 52.500 160 70 4 25 181 22 178 1.96e-47 170
Msa0056980 AT1G33060.1 52.500 160 70 4 25 181 22 178 2.21e-47 170
Msa0056980 AT4G35580.1 53.846 156 66 4 25 177 7 159 8.90e-47 166
Msa0056980 AT4G35580.3 53.846 156 66 4 25 177 7 159 8.95e-47 167
Msa0056980 AT4G35580.2 53.846 156 66 4 25 177 7 159 1.06e-46 166
Msa0056980 AT1G52880.1 50.932 161 61 4 31 177 21 177 1.84e-45 158
Msa0056980 AT1G26870.1 43.429 175 88 2 14 178 3 176 1.94e-45 160
Msa0056980 AT1G34180.3 50.000 158 73 4 29 183 18 172 8.00e-45 160
Msa0056980 AT5G39820.1 41.489 188 85 4 14 178 7 192 1.01e-44 157
Msa0056980 AT1G34190.1 50.000 158 73 4 29 183 18 172 4.49e-44 160
Msa0056980 AT1G34180.1 50.000 158 73 4 29 183 18 172 4.77e-44 160
Msa0056980 AT2G02450.1 48.734 158 77 4 29 186 53 206 5.22e-44 156
Msa0056980 AT2G02450.2 48.734 158 77 4 29 186 53 206 5.64e-44 157
Msa0056980 AT2G33480.1 50.658 152 68 4 27 177 15 160 2.15e-43 151
Msa0056980 AT3G10480.3 47.120 191 57 7 26 177 26 211 2.39e-43 157
Msa0056980 AT3G49530.2 50.000 156 73 4 25 177 11 164 3.65e-43 154
Msa0056980 AT1G34180.4 46.471 170 73 4 29 183 18 184 5.29e-43 155
Msa0056980 AT2G43000.1 44.304 158 83 3 22 177 13 167 7.45e-43 150
Msa0056980 AT3G49530.1 50.314 159 68 5 25 177 11 164 9.97e-43 155
Msa0056980 AT2G33480.2 50.000 156 61 5 27 177 15 158 1.17e-42 149
Msa0056980 AT5G64060.1 46.154 156 78 4 27 179 6 158 2.08e-42 151
Msa0056980 AT5G24590.2 45.109 184 91 5 26 201 12 193 2.58e-42 153
Msa0056980 AT5G09330.5 49.359 156 73 4 27 179 6 158 2.58e-42 154
Msa0056980 AT5G09330.2 49.359 156 73 4 27 179 6 158 2.58e-42 154
Msa0056980 AT5G09330.4 49.359 156 73 4 27 179 6 158 2.58e-42 154
Msa0056980 AT5G09330.3 49.359 156 73 4 27 179 6 158 2.58e-42 154
Msa0056980 AT5G09330.1 49.359 156 73 4 27 179 6 158 2.58e-42 154
Msa0056980 AT1G34180.2 46.471 170 73 4 29 183 18 184 3.65e-42 155
Msa0056980 AT1G32870.3 48.370 184 78 7 7 183 29 202 1.07e-41 153
Msa0056980 AT2G27300.1 49.032 155 68 5 26 179 13 157 2.22e-41 148
Msa0056980 AT1G32870.2 51.235 162 69 5 27 183 10 166 3.06e-41 152
Msa0056980 AT1G32870.1 51.235 162 69 5 27 183 10 166 3.12e-41 152
Msa0056980 AT2G17040.1 43.871 155 81 3 29 182 8 157 5.68e-41 145
Msa0056980 AT1G32510.1 45.783 166 80 4 27 183 6 170 7.53e-41 145
Msa0056980 AT5G22290.1 46.053 152 73 4 26 176 20 163 8.61e-39 141
Msa0056980 AT1G56010.1 37.719 228 118 8 77 290 2 219 4.26e-37 134
Msa0056980 AT4G28530.2 47.794 136 56 1 19 139 2 137 1.47e-36 135
Msa0056980 AT3G12977.2 48.387 155 54 7 77 213 14 160 3.89e-36 131
Msa0056980 AT3G12910.1 38.378 185 95 6 18 184 9 192 5.19e-36 133
Msa0056980 AT3G44290.2 48.413 126 61 3 29 153 16 138 1.29e-35 130
Msa0056980 AT4G10350.2 57.798 109 40 3 73 177 7 113 1.94e-35 131
Msa0056980 AT3G44290.1 48.413 126 61 3 29 153 16 138 8.46e-35 130
Msa0056980 AT5G04395.1 44.371 151 69 3 19 155 20 169 9.54e-34 124
Msa0056980 AT3G44350.2 35.542 166 100 3 25 184 3 167 3.00e-27 108
Msa0056980 AT5G64530.1 35.714 182 85 6 27 191 3 169 6.53e-27 105
Msa0056980 AT5G64530.2 42.748 131 58 4 27 155 3 118 9.29e-27 104
Msa0056980 AT2G33480.3 54.167 96 41 2 83 177 10 103 3.46e-26 104
Msa0056980 AT3G44350.1 38.462 143 83 2 25 163 3 144 1.06e-25 101
Msa0056980 AT4G01520.1 34.239 184 112 5 28 206 5 184 1.41e-25 105
Msa0056980 AT1G02230.1 43.846 130 66 5 28 153 4 130 2.66e-25 105
Msa0056980 AT4G01550.1 38.411 151 86 3 30 177 7 153 2.88e-25 106
Msa0056980 AT5G22380.1 40.909 132 66 4 30 153 8 135 1.19e-24 100
Msa0056980 AT4G01540.4 35.928 167 98 5 30 191 7 169 1.44e-24 103
Msa0056980 AT4G01540.3 35.928 167 98 5 30 191 7 169 2.34e-24 103
Msa0056980 AT4G01540.2 35.329 167 99 5 30 191 7 169 2.66e-24 103
Msa0056980 AT3G04420.2 39.416 137 78 3 28 161 4 138 2.98e-24 101
Msa0056980 AT4G01540.1 35.329 167 99 5 30 191 7 169 3.78e-24 103
Msa0056980 AT3G04420.1 40.602 133 74 3 28 157 4 134 4.99e-24 101
Msa0056980 AT1G02250.1 38.462 130 73 4 28 153 4 130 1.28e-21 95.1
Msa0056980 AT3G10490.4 56.962 79 30 2 101 177 2 78 7.64e-21 92.8
Msa0056980 AT3G10490.3 56.962 79 30 2 101 177 2 78 7.64e-21 92.8
Msa0056980 AT1G02220.1 37.984 129 72 4 28 153 4 127 5.01e-20 90.9
Msa0056980 AT2G18060.2 50.000 74 34 2 106 179 2 72 3.07e-19 87.0
Msa0056980 AT2G43000.2 41.758 91 49 2 89 177 1 89 7.75e-19 84.0
Msa0056980 AT1G01010.1 38.346 133 71 5 30 153 6 136 1.46e-18 87.0
Msa0056980 AT3G04430.1 34.437 151 83 5 33 169 6 154 5.46e-17 79.0
Msa0056980 AT5G50820.1 32.192 146 72 6 27 162 17 145 3.69e-15 73.6
Msa0056980 AT5G14000.1 33.125 160 97 6 27 183 15 167 1.64e-14 72.0
Msa0056980 AT5G22290.2 48.571 70 29 2 107 176 2 64 3.98e-14 71.6
Msa0056980 AT5G14000.2 32.857 140 87 4 27 164 15 149 1.63e-13 68.2
Msa0056980 AT3G56530.1 31.788 151 91 4 23 167 48 192 7.56e-13 68.9
Msa0056980 AT5G56620.3 31.429 175 88 7 27 175 43 211 4.70e-12 67.4
Msa0056980 AT5G56620.2 31.429 175 88 7 27 175 43 211 4.79e-12 67.0
Msa0056980 AT5G56620.1 31.429 175 88 7 27 175 43 211 6.69e-12 66.6
Msa0056980 AT3G55210.1 27.647 170 105 5 26 182 10 174 3.35e-11 63.5

Find 96 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1_2:-12775926 Msa0056980:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1_2:-12776067 Msa0056980:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1_2:+12775951 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1_2:+12777265 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1_2:+12777259 None:intergenic
CAACAATGATGCAGCATTTA+GGG 0.296732 1_2:-12776066 Msa0056980:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1_2:-12778328 Msa0056980:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1_2:-12775849 Msa0056980:CDS
GTGTGGATCTTGATCATTAC+TGG 0.343277 1_2:-12775667 Msa0056980:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1_2:-12775908 Msa0056980:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1_2:-12777378 Msa0056980:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1_2:-12777430 Msa0056980:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1_2:-12775764 Msa0056980:CDS
GTACAATATGCAGGGTACTA+TGG 0.388563 1_2:-12775696 Msa0056980:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1_2:-12775770 Msa0056980:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1_2:-12778150 Msa0056980:intron
GACTGCTCTTGTAAGATTTG+AGG 0.407771 1_2:+12776153 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1_2:+12775913 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1_2:-12777357 Msa0056980:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1_2:-12775761 Msa0056980:CDS
CTTGTAAGATTTGAGGAAGA+AGG 0.437392 1_2:+12776160 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1_2:-12775950 Msa0056980:CDS
CTATTAGTTCTCACACCTGT+TGG 0.449944 1_2:+12777452 None:intergenic
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1_2:-12778334 Msa0056980:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1_2:-12775718 Msa0056980:CDS
TACAGTATTAATCTAGAAGT+TGG 0.456693 1_2:-12776121 Msa0056980:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1_2:+12775934 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1_2:+12775952 None:intergenic
ACTTCTAGATTAATACTGTA+AGG 0.463803 1_2:+12776124 None:intergenic
AGAGTGTTCCGCAAGAGTGC+AGG 0.467497 1_2:-12776196 Msa0056980:CDS
TTCTTATACTGGATTTGGAA+TGG 0.468387 1_2:+12777270 None:intergenic
GGGCTTAATTTGAATCTTGG+AGG 0.468716 1_2:-12775905 Msa0056980:CDS
TGGCAATAGGTACAATATGC+AGG 0.471195 1_2:-12775705 Msa0056980:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1_2:-12778322 Msa0056980:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1_2:-12776228 Msa0056980:intron
AGTTATATAATATACCTTGT+TGG 0.483224 1_2:+12777247 None:intergenic
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1_2:+12775848 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1_2:-12778338 Msa0056980:CDS
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1_2:-12777313 Msa0056980:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1_2:+12778266 None:intergenic
AGAGATCGTAAATATCCAAC+AGG 0.491428 1_2:-12777467 Msa0056980:CDS
GATGACTTCGCTTACTTGCA+TGG 0.492068 1_2:+12778536 None:intergenic
CCTAAATGCTGCATCATTGT+TGG 0.501547 1_2:+12776067 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1_2:-12776227 Msa0056980:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1_2:-12777519 Msa0056980:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1_2:-12778161 Msa0056980:CDS
GGAAGGAACTCGTGAGAAAG+AGG 0.513889 1_2:-12778301 Msa0056980:CDS
TGTACCTATTGCCATGAGTA+GGG 0.521891 1_2:+12775714 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1_2:-12775769 Msa0056980:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1_2:-12777505 Msa0056980:CDS
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1_2:-12775758 Msa0056980:CDS
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1_2:+12778274 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1_2:+12775713 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1_2:+12775968 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1_2:-12777437 Msa0056980:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1_2:+12778275 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1_2:-12775818 Msa0056980:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.549436 1_2:+12776073 None:intergenic
GAGAAGGATTCACCATTTCA+GGG 0.553123 1_2:-12775925 Msa0056980:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1_2:+12776188 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1_2:-12775941 Msa0056980:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1_2:+12776070 None:intergenic
TTGTAAGATTTGAGGAAGAA+GGG 0.560765 1_2:+12776161 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1_2:+12775781 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1_2:+12775811 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1_2:+12775854 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1_2:+12778267 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1_2:-12777518 Msa0056980:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1_2:-12778318 Msa0056980:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1_2:+12775641 None:intergenic
ACTACAGAAGTTCTAAGTGC+TGG 0.577816 1_2:-12775995 Msa0056980:CDS
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1_2:-12778160 Msa0056980:CDS
GTAAGTGATGAGCTCTTCAT+CGG 0.580741 1_2:+12778245 None:intergenic
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1_2:+12777403 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1_2:-12777419 Msa0056980:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1_2:-12778285 Msa0056980:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1_2:-12775947 Msa0056980:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1_2:+12775780 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1_2:-12775725 Msa0056980:CDS
GGCATATTATTATTAAAGCT+AGG 0.598474 1_2:+12776094 None:intergenic
AGTGTTACATCAGAATTGGT+TGG 0.599286 1_2:-12777374 Msa0056980:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1_2:+12775935 None:intergenic
GTGATGAGCTCTTCATCGGT+AGG 0.601835 1_2:+12778249 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1_2:-12777329 Msa0056980:CDS
ATATTCATGCATGACCCAGT+TGG 0.607778 1_2:+12777298 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1_2:-12775704 Msa0056980:CDS
CAAAATAGTTTGTGATGACG+TGG 0.610809 1_2:+12775880 None:intergenic
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1_2:+12775644 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1_2:-12777418 Msa0056980:CDS
GGGTACTATGGAAAATTGTG+TGG 0.654095 1_2:-12775684 Msa0056980:CDS
ATATTATTATTAAAGCTAGG+AGG 0.657871 1_2:+12776097 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1_2:-12776224 Msa0056980:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1_2:-12777261 Msa0056980:intron
GAAAACCACAGGGAAAGACA+AGG 0.680177 1_2:-12777408 Msa0056980:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1_2:-12777312 Msa0056980:CDS
GGATGAAATCGAAATCCGGG+AGG 0.762260 1_2:+12778270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr1_2:12776157-12776176 None:intergenic 0.0%
!! TTTATAAAAACAAAAAACTA+GGG - chr1_2:12776292-12776311 Msa0056980:intron 10.0%
!! AGAAAAATTAAAATTAGTTA+TGG - chr1_2:12776388-12776407 Msa0056980:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG - chr1_2:12776586-12776605 Msa0056980:intron 10.0%
!! ATGAAAAAAATTATGATAAT+AGG - chr1_2:12777011-12777030 Msa0056980:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG - chr1_2:12777012-12777031 Msa0056980:intron 10.0%
!! AAATTTAAAGATGTATAATA+GGG + chr1_2:12777044-12777063 None:intergenic 10.0%
!! AAAATTTAAAGATGTATAAT+AGG + chr1_2:12777045-12777064 None:intergenic 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG - chr1_2:12777422-12777441 Msa0056980:CDS 10.0%
!!! ACAAAAATTTAAACTTTTTA+TGG - chr1_2:12777636-12777655 Msa0056980:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG - chr1_2:12777637-12777656 Msa0056980:intron 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG - chr1_2:12777638-12777657 Msa0056980:intron 10.0%
!! GGTTAAGAAAATTAAATATA+GGG + chr1_2:12775730-12775749 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG + chr1_2:12775751-12775770 None:intergenic 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG + chr1_2:12775752-12775771 None:intergenic 15.0%
!!! TTTATACATGCTTTTAAATT+TGG - chr1_2:12775751-12775770 Msa0056980:CDS 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG + chr1_2:12776123-12776142 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG + chr1_2:12776289-12776308 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG - chr1_2:12776291-12776310 Msa0056980:intron 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG + chr1_2:12776534-12776553 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG - chr1_2:12776541-12776560 Msa0056980:intron 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG + chr1_2:12777295-12777314 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG + chr1_2:12777296-12777315 None:intergenic 15.0%
!!! ATTTTAGTTTCTTAAACTTT+TGG - chr1_2:12777459-12777478 Msa0056980:CDS 15.0%
!!! TAACGAATAGAATTTTTTTT+AGG - chr1_2:12777608-12777627 Msa0056980:intron 15.0%
!! GGGTTAAGAAAATTAAATAT+AGG + chr1_2:12775731-12775750 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG + chr1_2:12776124-12776143 None:intergenic 20.0%
!! TTATGTAAAATTTATAGGGA+AGG - chr1_2:12776658-12776677 Msa0056980:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG - chr1_2:12776842-12776861 Msa0056980:intron 20.0%
!! AGTTATATAATATACCTTGT+TGG + chr1_2:12776942-12776961 None:intergenic 20.0%
!! TTATTCAGACTATTATAAGA+TGG + chr1_2:12777199-12777218 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG + chr1_2:12777234-12777253 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG + chr1_2:12777265-12777284 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG - chr1_2:12777504-12777523 Msa0056980:CDS 20.0%
!! AATTCATTTCTTAAACTTGT+GGG - chr1_2:12777505-12777524 Msa0056980:CDS 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG + chr1_2:12777722-12777741 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG + chr1_2:12777763-12777782 None:intergenic 20.0%
!! ATATTATTATTAAAGCTAGG+AGG + chr1_2:12778092-12778111 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG - chr1_2:12778417-12778436 Msa0056980:intron 20.0%
!! AATAATAATAACTTAGGGTT+TGG - chr1_2:12778422-12778441 Msa0056980:intron 20.0%
!! AATTTTACATGCAAAGCAAT+AGG - chr1_2:12775994-12776013 Msa0056980:CDS 25.0%
!! TCCAGGTAAAATTTTATGTA+TGG - chr1_2:12776053-12776072 Msa0056980:CDS 25.0%
!! TCCATACATAAAATTTTACC+TGG + chr1_2:12776057-12776076 None:intergenic 25.0%
!! TTTTATAAAGCATGGATGAA+AGG + chr1_2:12776281-12776300 None:intergenic 25.0%
! AAGATGAAAGTCATATATTG+TGG + chr1_2:12776451-12776470 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG + chr1_2:12777284-12777303 None:intergenic 25.0%
!! AAGAGTATATTTGCAAAGTT+GGG + chr1_2:12777340-12777359 None:intergenic 25.0%
!! TAAGAGTATATTTGCAAAGT+TGG + chr1_2:12777341-12777360 None:intergenic 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG - chr1_2:12777433-12777452 Msa0056980:CDS 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG - chr1_2:12777434-12777453 Msa0056980:CDS 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG + chr1_2:12777758-12777777 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG - chr1_2:12777821-12777840 Msa0056980:intron 25.0%
! ACTTCTAGATTAATACTGTA+AGG + chr1_2:12778065-12778084 None:intergenic 25.0%
! TACAGTATTAATCTAGAAGT+TGG - chr1_2:12778065-12778084 Msa0056980:intron 25.0%
! GGCATATTATTATTAAAGCT+AGG + chr1_2:12778095-12778114 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG - chr1_2:12778416-12778435 Msa0056980:intron 25.0%
!! TTTTTGTGTGTTATTCCAGA+AGG - chr1_2:12775822-12775841 Msa0056980:CDS 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG - chr1_2:12775848-12775867 Msa0056980:CDS 30.0%
CTTTCATCTTTCTTGTGATA+TGG - chr1_2:12776461-12776480 Msa0056980:intron 30.0%
TCTTTCTTGTGATATGGTTA+AGG - chr1_2:12776467-12776486 Msa0056980:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG + chr1_2:12776919-12776938 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG + chr1_2:12777073-12777092 None:intergenic 30.0%
TTGTAAGATTTGAGGAAGAA+GGG + chr1_2:12778028-12778047 None:intergenic 30.0%
AAATGGGAATATTGATGCAT+TGG + chr1_2:12778221-12778240 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG + chr1_2:12778237-12778256 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG + chr1_2:12778276-12778295 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG - chr1_2:12778425-12778444 Msa0056980:intron 30.0%
TAACAACTTCTTTGTCCTTC+TGG + chr1_2:12775840-12775859 None:intergenic 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG - chr1_2:12775852-12775871 Msa0056980:CDS 35.0%
TAGCAAAGAAAGGAAGGATT+TGG - chr1_2:12775858-12775877 Msa0056980:CDS 35.0%
AGAAAGGAAGGATTTGGAAA+TGG - chr1_2:12775864-12775883 Msa0056980:CDS 35.0%
AGAGATCGTAAATATCCAAC+AGG - chr1_2:12776719-12776738 Msa0056980:intron 35.0%
ACTAATAGAGCAACAAACAC+TGG - chr1_2:12776749-12776768 Msa0056980:intron 35.0%
CAACAGTGTTACATCAGAAT+TGG - chr1_2:12776808-12776827 Msa0056980:intron 35.0%
AGTGTTACATCAGAATTGGT+TGG - chr1_2:12776812-12776831 Msa0056980:intron 35.0%
! GGTTGGTATGAAGAAAACTT+TGG - chr1_2:12776829-12776848 Msa0056980:intron 35.0%
! GTTGGTTCTTATACTGGATT+TGG + chr1_2:12776924-12776943 None:intergenic 35.0%
ATCCAGTATAAGAACCAACA+AGG - chr1_2:12776925-12776944 Msa0056980:intron 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG + chr1_2:12776930-12776949 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG - chr1_2:12777118-12777137 Msa0056980:intron 35.0%
TAAATAGACCTCACACAAAG+TGG + chr1_2:12777165-12777184 None:intergenic 35.0%
AGTCAAAACCGTCATAGTAT+TGG - chr1_2:12777711-12777730 Msa0056980:intron 35.0%
ATGTCGAATATATATGCAGC+AGG - chr1_2:12777950-12777969 Msa0056980:intron 35.0%
TATATATGCAGCAGGATGAA+TGG - chr1_2:12777958-12777977 Msa0056980:intron 35.0%
ATATATGCAGCAGGATGAAT+GGG - chr1_2:12777959-12777978 Msa0056980:intron 35.0%
CTTGTAAGATTTGAGGAAGA+AGG + chr1_2:12778029-12778048 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG - chr1_2:12778120-12778139 Msa0056980:intron 35.0%
! CTAAGGGTGATGATGATAAA+TGG + chr1_2:12778238-12778257 None:intergenic 35.0%
CATTTATCATCATCACCCTT+AGG - chr1_2:12778236-12778255 Msa0056980:CDS 35.0%
! TCAGGGCTTAATTTGAATCT+TGG - chr1_2:12778278-12778297 Msa0056980:CDS 35.0%
! CAAAATAGTTTGTGATGACG+TGG + chr1_2:12778309-12778328 None:intergenic 35.0%
! CGTCATCACAAACTATTTTG+AGG - chr1_2:12778309-12778328 Msa0056980:CDS 35.0%
ATTATTCTCTGCAGCAACAA+GGG + chr1_2:12778408-12778427 None:intergenic 35.0%
TATTATTCTCTGCAGCAACA+AGG + chr1_2:12778409-12778428 None:intergenic 35.0%
AATAATGCAAACCCTACTCA+TGG - chr1_2:12778461-12778480 Msa0056980:intron 35.0%
AGGAAGGATTTGGAAATGGA+AGG - chr1_2:12775868-12775887 Msa0056980:CDS 40.0%
GTAGGATGAAATCGAAATCC+GGG + chr1_2:12775922-12775941 None:intergenic 40.0%
GGTAGGATGAAATCGAAATC+CGG + chr1_2:12775923-12775942 None:intergenic 40.0%
GTAAGTGATGAGCTCTTCAT+CGG + chr1_2:12775944-12775963 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG - chr1_2:12776667-12776686 Msa0056980:intron 40.0%
TTTATAGGGAAGGCCAAGAT+GGG - chr1_2:12776668-12776687 Msa0056980:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG + chr1_2:12776684-12776703 None:intergenic 40.0%
CCAAGATGGGTACAAAAGAA+TGG - chr1_2:12776681-12776700 Msa0056980:intron 40.0%
! CTATTAGTTCTCACACCTGT+TGG + chr1_2:12776737-12776756 None:intergenic 40.0%
GAGCAACAAACACTGGATAT+TGG - chr1_2:12776756-12776775 Msa0056980:intron 40.0%
ACTGGATATTGGAAAACCAC+AGG - chr1_2:12776767-12776786 Msa0056980:intron 40.0%
CTGGATATTGGAAAACCACA+GGG - chr1_2:12776768-12776787 Msa0056980:intron 40.0%
TAGAGGAGAGAAAACCAACT+GGG - chr1_2:12776874-12776893 Msa0056980:intron 40.0%
ATATTCATGCATGACCCAGT+TGG + chr1_2:12776891-12776910 None:intergenic 40.0%
TATCCAGAAACACACACACA+TGG - chr1_2:12777898-12777917 Msa0056980:intron 40.0%
GACTGCTCTTGTAAGATTTG+AGG + chr1_2:12778036-12778055 None:intergenic 40.0%
AAATGCTGCATCATTGTTGG+TGG + chr1_2:12778119-12778138 None:intergenic 40.0%
CCTAAATGCTGCATCATTGT+TGG + chr1_2:12778122-12778141 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG - chr1_2:12778119-12778138 Msa0056980:intron 40.0%
! GCAACTCATTTTCAGCTCTA+TGG - chr1_2:12778152-12778171 Msa0056980:CDS 40.0%
! CTCATTTTCAGCTCTATGGA+AGG - chr1_2:12778156-12778175 Msa0056980:CDS 40.0%
!! ACTACAGAAGTTCTAAGTGC+TGG - chr1_2:12778191-12778210 Msa0056980:CDS 40.0%
TTATCATCATCACCCTTAGG+AGG - chr1_2:12778239-12778258 Msa0056980:CDS 40.0%
GAGAAGGATTCACCATTTCA+GGG - chr1_2:12778261-12778280 Msa0056980:CDS 40.0%
! GGGCTTAATTTGAATCTTGG+AGG - chr1_2:12778281-12778300 Msa0056980:CDS 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG + chr1_2:12778335-12778354 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG - chr1_2:12778337-12778356 Msa0056980:CDS 40.0%
GCCATAGTATGAGTAGTTGA+TGG + chr1_2:12778341-12778360 None:intergenic 40.0%
ATTTGCACCTGTCATCATGT+TGG + chr1_2:12778378-12778397 None:intergenic 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG - chr1_2:12778428-12778447 Msa0056980:intron 40.0%
TGTACCTATTGCCATGAGTA+GGG + chr1_2:12778475-12778494 None:intergenic 40.0%
TTGTACCTATTGCCATGAGT+AGG + chr1_2:12778476-12778495 None:intergenic 40.0%
TGGCAATAGGTACAATATGC+AGG - chr1_2:12778481-12778500 Msa0056980:intron 40.0%
GGCAATAGGTACAATATGCA+GGG - chr1_2:12778482-12778501 Msa0056980:intron 40.0%
! GTACAATATGCAGGGTACTA+TGG - chr1_2:12778490-12778509 Msa0056980:intron 40.0%
GGGTACTATGGAAAATTGTG+TGG - chr1_2:12778502-12778521 Msa0056980:intron 40.0%
GTGTGGATCTTGATCATTAC+TGG - chr1_2:12778519-12778538 Msa0056980:intron 40.0%
AAATCGAAATCCGGGAGGTA+GGG + chr1_2:12775914-12775933 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG - chr1_2:12776025-12776044 Msa0056980:CDS 45.0%
TCTCAACAAATGCGAGCCAT+GGG - chr1_2:12776026-12776045 Msa0056980:CDS 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG + chr1_2:12776045-12776064 None:intergenic 45.0%
GAAAACCACAGGGAAAGACA+AGG - chr1_2:12776778-12776797 Msa0056980:intron 45.0%
AATCTCCTTGTCTTTCCCTG+TGG + chr1_2:12776786-12776805 None:intergenic 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG + chr1_2:12776875-12776894 None:intergenic 45.0%
CTAGAGGAGAGAAAACCAAC+TGG - chr1_2:12776873-12776892 Msa0056980:intron 45.0%
TAGACCTCACACAAAGTGGT+GGG + chr1_2:12777161-12777180 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG + chr1_2:12777162-12777181 None:intergenic 45.0%
TGTCCATGTGTGTGTGTTTC+TGG + chr1_2:12777904-12777923 None:intergenic 45.0%
GTGAATCCTTCTCCTCCTAA+GGG + chr1_2:12778254-12778273 None:intergenic 45.0%
GGAGAAGGATTCACCATTTC+AGG - chr1_2:12778260-12778279 Msa0056980:CDS 45.0%
TTCAGCTCCAACATGATGAC+AGG - chr1_2:12778368-12778387 Msa0056980:intron 45.0%
CAAACCCTACTCATGGCAAT+AGG - chr1_2:12778468-12778487 Msa0056980:intron 45.0%
!! TTTAATTATGTAAAATTTAT+AGG - chr1_2:12776653-12776672 Msa0056980:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG - chr1_2:12776654-12776673 Msa0056980:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG + chr1_2:12777560-12777579 None:intergenic 5.0%
!! TAATAATATATTTAAGAATA+AGG - chr1_2:12777663-12777682 Msa0056980:intron 5.0%
!! AATAATATATTTAAGAATAA+GGG - chr1_2:12777664-12777683 Msa0056980:intron 5.0%
GGAAGGAACTCGTGAGAAAG+AGG - chr1_2:12775885-12775904 Msa0056980:CDS 50.0%
AAAGAGGAAACCCTACCTCC+CGG - chr1_2:12775901-12775920 Msa0056980:CDS 50.0%
GAAATCGAAATCCGGGAGGT+AGG + chr1_2:12775915-12775934 None:intergenic 50.0%
GGATGAAATCGAAATCCGGG+AGG + chr1_2:12775919-12775938 None:intergenic 50.0%
GTGATGAGCTCTTCATCGGT+AGG + chr1_2:12775940-12775959 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG - chr1_2:12776857-12776876 Msa0056980:intron 50.0%
ATGTCCCACCACTTTGTGTG+AGG - chr1_2:12777154-12777173 Msa0056980:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG - chr1_2:12777962-12777981 Msa0056980:intron 50.0%
TCTTTGCACCTGCACTCTTG+CGG + chr1_2:12778001-12778020 None:intergenic 50.0%
! TGCTGCATCATTGTTGGTGG+TGG + chr1_2:12778116-12778135 None:intergenic 50.0%
TCATCACCCTTAGGAGGAGA+AGG - chr1_2:12778245-12778264 Msa0056980:CDS 50.0%
GGTGAATCCTTCTCCTCCTA+AGG + chr1_2:12778255-12778274 None:intergenic 50.0%
! AGAGTGTTCCGCAAGAGTGC+AGG - chr1_2:12777990-12778009 Msa0056980:intron 55.0%
TGCGAGCCATGGGAGCTTCC+AGG - chr1_2:12776036-12776055 Msa0056980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12775652 12778556 12775652 ID=Msa0056980;Name=Msa0056980
chr1_2 mRNA 12775652 12778556 12775652 ID=Msa0056980-mRNA-1;Parent=Msa0056980;Name=Msa0056980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.33|0|0.75|1|1|4|0|360
chr1_2 exon 12778551 12778556 12778551 ID=Msa0056980-mRNA-1:exon:4949;Parent=Msa0056980-mRNA-1
chr1_2 exon 12778151 12778367 12778151 ID=Msa0056980-mRNA-1:exon:4948;Parent=Msa0056980-mRNA-1
chr1_2 exon 12777262 12777533 12777262 ID=Msa0056980-mRNA-1:exon:4947;Parent=Msa0056980-mRNA-1
chr1_2 exon 12775652 12776239 12775652 ID=Msa0056980-mRNA-1:exon:4946;Parent=Msa0056980-mRNA-1
chr1_2 CDS 12778551 12778556 12778551 ID=Msa0056980-mRNA-1:cds;Parent=Msa0056980-mRNA-1
chr1_2 CDS 12778151 12778367 12778151 ID=Msa0056980-mRNA-1:cds;Parent=Msa0056980-mRNA-1
chr1_2 CDS 12777262 12777533 12777262 ID=Msa0056980-mRNA-1:cds;Parent=Msa0056980-mRNA-1
chr1_2 CDS 12775652 12776239 12775652 ID=Msa0056980-mRNA-1:cds;Parent=Msa0056980-mRNA-1
Gene Sequence

>Msa0056980

ATGCAAAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACTCGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAGCTCATCACTTACTATCTTGTAAACAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTGTTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCCTCAAATCTTACAAGAGCAGTCATGAATCCTTACAGTATTAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATGCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCAACTCATTTTCAGCTCTATGGAAGGAACTACATCAACACTACAGAAGTTCTAAGTGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGTTCCACGTCATCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGAAAATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>Msa0056980

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSNLTRAVMNPYSINLEVGPPSFNNNMPPPTMMQHLGLDSATHFQLYGRNYINTTEVLSAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMENCVDLDHYWPPSY*