AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057060 MtrunA17_Chr1g0147421 95.028 362 10 4 1 355 1 361 0.0 702
Msa0057060 MtrunA17_Chr3g0139331 59.504 363 106 15 17 355 1 346 2.26e-115 338
Msa0057060 MtrunA17_Chr6g0484441 72.500 160 35 4 24 178 2 157 3.03e-75 235
Msa0057060 MtrunA17_Chr2g0316971 69.677 155 38 3 27 173 23 176 1.34e-73 233
Msa0057060 MtrunA17_Chr4g0060931 62.941 170 52 4 17 178 7 173 3.41e-70 223
Msa0057060 MtrunA17_Chr3g0091921 62.500 168 51 5 20 178 8 172 1.94e-68 217
Msa0057060 MtrunA17_Chr6g0461661 55.330 197 72 5 27 208 18 213 2.77e-66 214
Msa0057060 MtrunA17_Chr7g0253011 61.404 171 55 4 27 187 17 186 6.19e-66 213
Msa0057060 MtrunA17_Chr6g0453451 54.146 205 74 7 6 202 3 195 1.31e-65 210
Msa0057060 MtrunA17_Chr3g0144271 61.146 157 52 2 1 152 1 153 2.54e-61 202
Msa0057060 MtrunA17_Chr7g0217721 56.471 170 50 4 30 178 22 188 3.48e-57 189
Msa0057060 MtrunA17_Chr2g0312321 55.090 167 61 5 24 182 8 168 3.44e-55 183
Msa0057060 MtrunA17_Chr1g0183741 50.314 159 70 3 19 172 2 156 3.65e-53 176
Msa0057060 MtrunA17_Chr7g0261411 50.318 157 69 3 19 170 2 154 1.97e-51 172
Msa0057060 MtrunA17_Chr7g0217711 61.481 135 44 3 30 159 22 153 1.43e-50 167
Msa0057060 MtrunA17_Chr4g0017921 56.494 154 54 5 27 172 8 156 3.12e-50 171
Msa0057060 MtrunA17_Chr2g0309331 50.610 164 70 5 24 179 7 167 3.97e-50 171
Msa0057060 MtrunA17_Chr3g0124761 50.000 176 69 5 24 187 4 172 9.48e-50 168
Msa0057060 MtrunA17_Chr7g0263931 50.000 166 72 3 17 172 1 165 1.06e-49 169
Msa0057060 MtrunA17_Chr2g0318101 48.276 174 66 4 20 173 8 177 1.12e-49 170
Msa0057060 MtrunA17_Chr5g0398971 51.948 154 64 4 27 172 7 158 5.29e-49 168
Msa0057060 MtrunA17_Chr7g0252971 49.412 170 62 5 27 176 8 173 5.65e-49 167
Msa0057060 MtrunA17_Chr5g0417791 51.899 158 59 5 27 172 3 155 6.43e-49 165
Msa0057060 MtrunA17_Chr4g0018391 53.247 154 60 5 27 172 7 156 7.92e-49 167
Msa0057060 MtrunA17_Chr4g0056541 53.247 154 60 5 27 172 7 156 1.80e-48 167
Msa0057060 MtrunA17_Chr2g0318081 51.553 161 65 5 26 178 15 170 2.08e-48 166
Msa0057060 MtrunA17_Chr8g0359921 49.689 161 70 4 26 178 13 170 2.26e-48 166
Msa0057060 MtrunA17_Chr2g0309891 55.063 158 57 7 26 173 5 158 2.76e-48 166
Msa0057060 MtrunA17_Chr6g0481091 53.205 156 62 5 27 174 6 158 3.48e-48 162
Msa0057060 MtrunA17_Chr4g0047841 44.898 196 65 6 27 190 15 199 1.30e-47 164
Msa0057060 MtrunA17_Chr3g0109821 53.503 157 61 5 26 173 5 158 2.23e-47 170
Msa0057060 MtrunA17_Chr5g0405211 49.045 157 68 5 24 172 5 157 5.12e-47 163
Msa0057060 MtrunA17_Chr4g0042561 48.555 173 70 6 17 177 1 166 5.98e-47 160
Msa0057060 MtrunA17_Chr5g0433781 53.846 156 61 5 26 173 5 157 6.33e-47 168
Msa0057060 MtrunA17_Chr8g0346001 46.154 182 77 5 24 187 12 190 7.19e-47 164
Msa0057060 MtrunA17_Chr2g0326361 41.870 246 104 10 26 252 13 238 1.28e-46 161
Msa0057060 MtrunA17_Chr1g0200561 46.784 171 79 5 16 178 8 174 1.48e-46 161
Msa0057060 MtrunA17_Chr8g0384721 47.977 173 72 6 17 179 1 165 2.92e-46 159
Msa0057060 MtrunA17_Chr7g0214071 50.307 163 64 6 24 177 12 166 9.54e-46 157
Msa0057060 MtrunA17_Chr1g0197361 49.045 157 71 3 29 178 10 164 1.30e-45 164
Msa0057060 MtrunA17_Chr3g0092671 50.318 157 69 3 29 178 7 161 2.21e-45 162
Msa0057060 MtrunA17_Chr8g0372121 45.679 162 76 5 24 177 3 160 2.68e-45 157
Msa0057060 MtrunA17_Chr8g0361731 44.509 173 80 4 16 173 3 174 7.55e-44 155
Msa0057060 MtrunA17_Chr3g0130731 45.810 179 82 6 24 193 4 176 2.36e-43 151
Msa0057060 MtrunA17_Chr5g0417001 43.902 164 77 3 24 173 11 173 7.67e-42 150
Msa0057060 MtrunA17_Chr5g0400461 47.239 163 71 6 26 176 5 164 4.05e-41 147
Msa0057060 MtrunA17_Chr6g0453131 35.135 259 126 8 10 250 2 236 7.10e-41 147
Msa0057060 MtrunA17_Chr3g0128151 50.968 155 65 5 26 172 21 172 3.80e-39 146
Msa0057060 MtrunA17_Chr4g0076731 43.902 164 83 5 23 181 50 209 8.92e-39 143
Msa0057060 MtrunA17_Chr4g0054791 43.646 181 77 7 17 183 1 170 1.04e-38 140
Msa0057060 MtrunA17_Chr1g0197351 48.447 161 66 5 26 172 41 198 1.07e-38 143
Msa0057060 MtrunA17_Chr5g0442771 39.429 175 89 4 21 179 12 185 1.63e-38 139
Msa0057060 MtrunA17_Chr5g0428991 50.000 154 66 5 27 172 25 175 4.12e-38 144
Msa0057060 MtrunA17_Chr3g0130101 46.104 154 72 5 29 174 9 159 3.66e-37 137
Msa0057060 MtrunA17_Chr4g0038751 42.500 160 81 4 24 177 12 166 1.55e-36 134
Msa0057060 MtrunA17_Chr3g0113001 62.162 111 31 3 77 178 14 122 2.34e-36 133
Msa0057060 MtrunA17_Chr3g0128111 48.344 151 67 5 30 172 45 192 4.88e-36 131
Msa0057060 MtrunA17_Chr1g0201021 47.500 160 69 7 29 178 21 175 6.61e-36 137
Msa0057060 MtrunA17_Chr2g0311651 38.624 189 94 6 11 178 5 192 1.94e-35 131
Msa0057060 MtrunA17_Chr8g0385991 39.106 179 87 5 27 190 14 185 5.59e-35 127
Msa0057060 MtrunA17_Chr2g0311661 37.766 188 96 5 11 178 5 191 6.49e-35 129
Msa0057060 MtrunA17_Chr8g0364791 43.506 154 76 5 27 172 6 156 1.81e-34 131
Msa0057060 MtrunA17_Chr3g0131911 38.605 215 103 9 27 225 14 215 4.70e-34 125
Msa0057060 MtrunA17_Chr8g0384201 42.208 154 78 5 27 172 6 156 1.12e-32 127
Msa0057060 MtrunA17_Chr4g0026141 45.185 135 64 4 24 149 2 135 6.19e-32 120
Msa0057060 MtrunA17_Chr4g0050701 41.026 156 77 4 27 173 11 160 6.54e-32 118
Msa0057060 MtrunA17_Chr8g0345671 43.333 150 73 4 27 169 11 155 1.91e-30 119
Msa0057060 MtrunA17_Chr2g0321631 43.571 140 62 6 28 154 5 140 8.08e-30 114
Msa0057060 MtrunA17_Chr8g0345701 43.243 148 60 4 22 148 2 146 8.64e-30 112
Msa0057060 MtrunA17_Chr8g0345711 43.448 145 72 5 25 162 10 151 3.43e-29 110
Msa0057060 MtrunA17_Chr7g0266701 34.946 186 101 7 25 191 2 186 7.32e-29 112
Msa0057060 MtrunA17_Chr8g0345691 44.186 129 64 3 27 148 12 139 6.40e-28 113
Msa0057060 MtrunA17_Chr3g0113031 62.637 91 26 4 94 178 11 99 3.44e-27 108
Msa0057060 MtrunA17_Chr8g0345731 37.662 154 85 5 25 169 22 173 1.29e-25 101
Msa0057060 MtrunA17_Chr8g0345721 34.555 191 79 5 3 148 2 191 1.82e-25 102
Msa0057060 MtrunA17_Chr2g0321741 42.623 122 56 4 56 171 20 133 1.71e-24 102
Msa0057060 MtrunA17_Chr8g0384351 41.096 146 69 5 27 172 10 138 2.97e-23 95.5
Msa0057060 MtrunA17_Chr3g0130321 38.608 158 80 6 27 171 7 160 6.98e-23 95.1
Msa0057060 MtrunA17_Chr7g0243371 51.899 79 33 1 82 155 18 96 4.06e-21 87.4
Msa0057060 MtrunA17_Chr8g0345741 35.664 143 80 4 38 173 2 139 9.02e-21 87.8
Msa0057060 MtrunA17_Chr7g0251661 35.606 132 77 4 24 150 7 135 5.02e-18 80.1
Msa0057060 MtrunA17_Chr7g0251651 34.109 129 77 4 27 150 18 143 8.41e-17 77.8
Msa0057060 MtrunA17_Chr3g0113011 60.000 50 19 1 27 76 19 67 9.83e-16 71.2
Msa0057060 MtrunA17_Chr3g0113041 63.043 46 16 1 31 76 23 67 9.57e-15 68.6
Msa0057060 MtrunA17_Chr7g0251671 31.818 132 82 4 24 150 7 135 5.83e-14 68.9
Msa0057060 MtrunA17_Chr4g0040541 31.138 167 90 6 27 173 48 209 2.29e-12 66.6
Msa0057060 MtrunA17_Chr2g0282871 26.754 228 129 8 27 234 53 262 2.04e-11 64.3
Msa0057060 MtrunA17_Chr7g0274971 28.652 178 111 7 33 199 11 183 6.02e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057060 AT2G24430.2 50.000 356 103 11 21 352 10 314 1.24e-99 297
Msa0057060 AT2G24430.1 50.000 356 103 11 21 352 10 314 1.24e-99 297
Msa0057060 AT3G18400.1 70.625 160 39 3 24 178 2 158 7.04e-76 237
Msa0057060 AT5G53950.1 68.125 160 42 3 25 176 15 173 3.46e-73 232
Msa0057060 AT5G61430.1 64.706 170 49 4 22 183 11 177 1.82e-70 223
Msa0057060 AT3G15170.1 66.875 160 44 3 22 173 15 173 1.05e-69 221
Msa0057060 AT5G07680.2 65.455 165 46 4 27 183 3 164 1.13e-69 221
Msa0057060 AT5G07680.1 61.878 181 54 5 15 183 1 178 1.36e-69 221
Msa0057060 AT1G76420.1 61.078 167 59 2 16 177 11 176 6.59e-67 214
Msa0057060 AT5G39610.1 58.333 192 62 6 22 204 15 197 4.54e-66 211
Msa0057060 AT5G18270.2 66.234 154 42 4 27 172 21 172 5.58e-64 207
Msa0057060 AT5G18270.1 65.584 154 43 4 27 172 21 172 1.96e-63 205
Msa0057060 AT3G29035.1 58.470 183 64 5 8 181 5 184 1.43e-62 202
Msa0057060 AT3G04060.1 58.427 178 64 4 18 187 11 186 1.58e-62 203
Msa0057060 AT4G27410.2 50.877 171 69 6 19 178 2 168 4.49e-53 177
Msa0057060 AT3G12977.1 47.115 208 78 9 24 208 15 213 3.29e-52 174
Msa0057060 AT1G56010.2 38.078 281 145 9 24 285 16 286 1.74e-51 174
Msa0057060 AT4G10350.1 56.129 155 56 5 27 172 9 160 8.73e-51 172
Msa0057060 AT1G33280.1 56.494 154 54 5 27 172 8 156 2.54e-50 171
Msa0057060 AT4G28530.1 41.038 212 101 4 19 210 2 209 2.77e-50 172
Msa0057060 AT3G10500.1 54.658 161 62 5 26 178 8 165 5.34e-50 176
Msa0057060 AT4G27410.3 46.809 188 68 7 19 178 2 185 8.64e-50 169
Msa0057060 AT1G69490.1 51.829 164 66 5 24 177 6 166 2.22e-49 167
Msa0057060 AT3G04070.2 47.541 183 79 5 20 186 3 184 7.55e-49 167
Msa0057060 AT1G65910.1 52.795 161 65 5 26 178 5 162 8.39e-49 174
Msa0057060 AT1G12260.2 51.266 158 65 5 27 176 7 160 1.39e-48 167
Msa0057060 AT1G12260.1 51.266 158 65 5 27 176 7 160 1.73e-48 168
Msa0057060 AT5G04410.1 53.416 161 64 5 26 178 8 165 3.62e-48 171
Msa0057060 AT1G61110.1 49.112 169 66 5 27 177 16 182 4.42e-48 165
Msa0057060 AT1G52890.1 50.943 159 69 4 26 178 13 168 5.28e-48 165
Msa0057060 AT1G01720.1 50.617 162 66 5 27 178 7 164 5.75e-48 164
Msa0057060 AT1G62700.1 51.899 158 64 5 27 176 7 160 8.27e-48 166
Msa0057060 AT1G62700.2 51.899 158 64 5 27 176 7 160 8.27e-48 166
Msa0057060 AT3G17730.1 50.299 167 72 5 27 185 6 169 9.47e-48 162
Msa0057060 AT2G18060.3 33.025 324 182 10 26 325 8 320 1.31e-47 165
Msa0057060 AT2G18060.1 33.025 324 182 10 26 325 8 320 1.31e-47 165
Msa0057060 AT3G15500.1 50.943 159 69 4 26 178 13 168 1.48e-47 164
Msa0057060 AT5G62380.2 50.311 161 68 5 27 179 7 163 2.26e-47 164
Msa0057060 AT5G62380.1 50.311 161 68 5 27 179 7 163 2.26e-47 164
Msa0057060 AT3G03200.1 54.487 156 59 5 26 172 5 157 2.49e-47 167
Msa0057060 AT4G36160.1 50.323 155 65 5 26 172 9 159 3.31e-47 164
Msa0057060 AT4G36160.3 50.323 155 65 5 26 172 9 159 3.31e-47 164
Msa0057060 AT4G36160.2 50.323 155 65 5 26 172 13 163 3.44e-47 164
Msa0057060 AT1G71930.2 48.408 157 69 5 24 172 6 158 4.92e-47 162
Msa0057060 AT1G71930.1 48.408 157 69 5 24 172 6 158 4.92e-47 162
Msa0057060 AT3G04070.1 43.719 199 79 5 20 186 3 200 2.09e-46 162
Msa0057060 AT2G46770.1 47.953 171 64 6 24 172 13 180 2.55e-46 162
Msa0057060 AT5G17260.1 53.846 156 60 5 26 172 5 157 2.79e-46 164
Msa0057060 AT3G61910.1 45.055 182 75 5 24 183 8 186 2.94e-46 160
Msa0057060 AT5G08790.1 49.701 167 69 5 24 179 4 166 4.53e-46 159
Msa0057060 AT1G79580.3 52.258 155 62 5 26 172 16 166 1.84e-45 159
Msa0057060 AT1G79580.5 52.258 155 62 5 26 172 16 166 1.84e-45 159
Msa0057060 AT1G79580.4 52.258 155 62 5 26 172 16 166 1.84e-45 159
Msa0057060 AT1G79580.2 52.258 155 62 5 26 172 16 166 1.84e-45 159
Msa0057060 AT1G79580.1 52.258 155 62 5 26 172 16 166 1.84e-45 159
Msa0057060 AT5G63790.1 50.595 168 66 6 24 179 47 209 1.93e-45 158
Msa0057060 AT5G63790.2 50.595 168 66 6 24 179 57 219 2.34e-45 158
Msa0057060 AT5G66300.1 48.387 155 69 4 26 172 11 162 2.35e-45 157
Msa0057060 AT3G10490.1 51.220 164 66 6 19 172 19 178 3.15e-45 155
Msa0057060 AT3G10480.1 54.430 158 56 7 26 172 26 178 6.75e-45 160
Msa0057060 AT3G10480.2 53.205 156 60 6 26 172 26 177 1.99e-44 159
Msa0057060 AT3G10490.2 51.220 164 66 6 19 172 19 178 5.05e-44 157
Msa0057060 AT4G17980.1 49.686 159 65 5 26 172 5 160 1.44e-43 151
Msa0057060 AT1G77450.1 48.780 164 65 5 27 178 10 166 1.71e-43 151
Msa0057060 AT4G17980.2 49.686 159 65 5 26 172 5 160 4.15e-43 151
Msa0057060 AT3G15510.1 44.910 167 68 4 31 177 21 183 5.32e-43 153
Msa0057060 AT5G46590.1 41.919 198 97 7 26 209 5 198 1.69e-42 149
Msa0057060 AT1G32770.1 42.714 199 89 9 27 206 16 208 2.29e-42 151
Msa0057060 AT5G46590.2 53.788 132 52 4 26 150 5 134 3.04e-42 149
Msa0057060 AT1G26870.1 42.286 175 85 3 14 173 3 176 4.79e-42 152
Msa0057060 AT5G13180.1 47.771 157 72 4 27 177 14 166 4.80e-42 147
Msa0057060 AT5G61430.2 63.478 115 32 3 77 183 2 114 6.41e-42 147
Msa0057060 AT1G54330.1 50.311 161 66 6 26 178 5 159 8.78e-42 148
Msa0057060 AT1G33060.1 50.000 160 69 5 25 176 22 178 9.12e-42 154
Msa0057060 AT1G33060.2 50.000 160 69 5 25 176 22 178 9.42e-42 154
Msa0057060 AT4G35580.1 51.282 156 65 5 25 172 7 159 1.94e-41 152
Msa0057060 AT4G35580.3 51.282 156 65 5 25 172 7 159 2.33e-41 152
Msa0057060 AT4G35580.2 51.282 156 65 5 25 172 7 159 2.54e-41 152
Msa0057060 AT5G39820.1 40.426 188 82 5 14 173 7 192 2.56e-41 148
Msa0057060 AT1G34180.3 48.101 158 71 5 29 178 18 172 4.95e-40 147
Msa0057060 AT1G32870.3 47.802 182 77 7 7 178 29 202 5.08e-40 149
Msa0057060 AT2G02450.1 46.835 158 75 5 29 181 53 206 6.43e-40 145
Msa0057060 AT2G02450.2 46.835 158 75 5 29 181 53 206 6.96e-40 145
Msa0057060 AT1G52880.1 48.447 161 60 5 31 172 21 177 7.63e-40 143
Msa0057060 AT1G32870.2 50.625 160 68 5 27 178 10 166 1.25e-39 147
Msa0057060 AT1G32870.1 50.625 160 68 5 27 178 10 166 1.35e-39 147
Msa0057060 AT2G43000.1 43.038 158 80 4 22 172 13 167 1.53e-39 141
Msa0057060 AT1G34190.1 48.101 158 71 5 29 178 18 172 2.10e-39 147
Msa0057060 AT1G34180.1 48.101 158 71 5 29 178 18 172 2.27e-39 147
Msa0057060 AT3G10480.3 45.550 191 55 8 26 172 26 211 3.93e-39 145
Msa0057060 AT1G34180.4 44.706 170 71 5 29 178 18 184 3.68e-38 142
Msa0057060 AT2G33480.1 48.026 152 67 5 27 172 15 160 6.21e-38 137
Msa0057060 AT2G17040.1 42.581 155 78 4 29 177 8 157 7.11e-38 137
Msa0057060 AT5G09330.5 46.250 160 75 5 27 178 6 162 7.75e-38 142
Msa0057060 AT5G09330.2 46.250 160 75 5 27 178 6 162 7.75e-38 142
Msa0057060 AT5G09330.4 46.250 160 75 5 27 178 6 162 7.75e-38 142
Msa0057060 AT5G09330.3 46.250 160 75 5 27 178 6 162 7.75e-38 142
Msa0057060 AT5G09330.1 46.250 160 75 5 27 178 6 162 7.75e-38 142
Msa0057060 AT1G34180.2 44.706 170 71 5 29 178 18 184 1.30e-37 142
Msa0057060 AT3G49530.2 47.436 156 72 5 25 172 11 164 3.38e-37 138
Msa0057060 AT2G33480.2 47.436 156 60 6 27 172 15 158 3.56e-37 135
Msa0057060 AT5G64060.1 43.590 156 77 5 27 174 6 158 5.16e-37 137
Msa0057060 AT3G49530.1 47.799 159 67 6 25 172 11 164 7.43e-37 139
Msa0057060 AT5G24590.2 42.935 184 90 6 26 196 12 193 1.81e-36 137
Msa0057060 AT1G32510.1 43.976 166 78 5 27 178 6 170 1.95e-36 133
Msa0057060 AT2G27300.1 46.452 155 67 6 26 174 13 157 8.28e-36 133
Msa0057060 AT5G22290.1 43.421 152 72 5 26 171 20 163 2.37e-33 127
Msa0057060 AT3G12910.1 37.297 185 92 7 18 179 9 192 1.05e-32 124
Msa0057060 AT1G56010.1 45.205 146 59 5 77 204 2 144 8.28e-32 120
Msa0057060 AT4G28530.2 44.853 136 55 2 19 134 2 137 2.76e-31 120
Msa0057060 AT3G12977.2 45.806 155 53 8 77 208 14 160 1.20e-30 116
Msa0057060 AT5G04395.1 43.709 151 65 5 19 150 20 169 3.42e-30 114
Msa0057060 AT3G44290.2 45.238 126 60 4 29 148 16 138 3.49e-30 115
Msa0057060 AT3G44290.1 45.238 126 60 4 29 148 16 138 2.19e-29 115
Msa0057060 AT4G10350.2 53.211 109 40 4 73 172 7 113 4.54e-29 114
Msa0057060 AT5G64530.1 37.288 177 84 6 27 186 3 169 4.56e-28 108
Msa0057060 AT5G64530.2 45.238 126 57 4 27 150 3 118 8.63e-28 107
Msa0057060 AT3G44350.2 34.940 166 96 4 25 179 3 167 8.95e-25 101
Msa0057060 AT4G01550.1 38.411 151 81 4 30 172 7 153 1.32e-24 104
Msa0057060 AT4G01520.1 34.239 184 107 6 28 201 5 184 6.82e-24 100
Msa0057060 AT3G44350.1 37.762 143 79 3 25 158 3 144 3.57e-23 94.7
Msa0057060 AT4G01540.4 35.329 167 94 6 30 186 7 169 5.69e-23 99.4
Msa0057060 AT4G01540.3 35.329 167 94 6 30 186 7 169 9.13e-23 99.0
Msa0057060 AT4G01540.2 34.731 167 95 6 30 186 7 169 1.07e-22 99.0
Msa0057060 AT4G01540.1 34.731 167 95 6 30 186 7 169 1.40e-22 99.0
Msa0057060 AT5G22380.1 39.394 132 63 5 30 148 8 135 3.87e-22 94.0
Msa0057060 AT1G02230.1 41.538 130 64 6 28 148 4 130 2.33e-21 94.4
Msa0057060 AT3G10490.4 56.962 79 30 2 96 172 2 78 7.35e-21 92.8
Msa0057060 AT3G10490.3 56.962 79 30 2 96 172 2 78 7.35e-21 92.8
Msa0057060 AT2G33480.3 50.000 96 40 3 83 172 10 103 8.84e-21 89.7
Msa0057060 AT3G04420.2 37.226 137 76 4 28 156 4 138 2.38e-20 90.1
Msa0057060 AT3G04420.1 38.346 133 72 4 28 152 4 134 3.79e-20 90.5
Msa0057060 AT2G18060.2 50.000 74 34 2 101 174 2 72 2.68e-19 87.0
Msa0057060 AT1G01010.1 38.168 131 69 5 30 148 6 136 4.23e-18 85.5
Msa0057060 AT1G02250.1 36.154 130 71 5 28 148 4 130 1.17e-17 83.6
Msa0057060 AT3G04430.1 34.000 150 80 5 33 164 6 154 4.24e-17 79.3
Msa0057060 AT2G43000.2 41.176 85 46 2 90 172 7 89 5.76e-17 79.0
Msa0057060 AT1G02220.1 35.659 129 70 5 28 148 4 127 2.60e-16 80.1
Msa0057060 AT5G50820.1 32.624 141 73 5 27 157 17 145 2.88e-16 76.6
Msa0057060 AT5G14000.1 33.750 160 91 7 27 178 15 167 5.10e-15 73.6
Msa0057060 AT5G22290.2 48.571 70 29 2 102 171 2 64 3.91e-14 71.6
Msa0057060 AT5G14000.2 33.571 140 81 5 27 159 15 149 5.20e-14 69.3
Msa0057060 AT4G28500.1 29.255 188 106 7 27 193 59 240 6.56e-12 66.2
Msa0057060 AT3G56530.1 32.450 151 85 6 23 162 48 192 1.11e-11 65.5
Msa0057060 AT3G55210.1 28.235 170 99 6 26 177 10 174 1.35e-11 64.7
Msa0057060 AT1G28470.1 30.488 164 90 5 26 170 76 234 1.54e-11 65.1

Find 94 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1_2:-12969924 Msa0057060:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1_2:-12970065 Msa0057060:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1_2:+12969949 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1_2:+12971262 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1_2:+12971256 None:intergenic
CAACAATGATGCAGCATTTA+GGG 0.296732 1_2:-12970064 Msa0057060:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1_2:-12972265 Msa0057060:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1_2:-12969847 Msa0057060:CDS
GTGTGGATCTTGATCATTAC+TGG 0.343277 1_2:-12969665 Msa0057060:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1_2:-12969906 Msa0057060:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1_2:-12971375 Msa0057060:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1_2:-12971427 Msa0057060:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1_2:-12969762 Msa0057060:CDS
GTACAATATGCAGGGTACTA+TGG 0.388563 1_2:-12969694 Msa0057060:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1_2:-12969768 Msa0057060:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1_2:-12972087 Msa0057060:intron
GACTGCTCTTGTAAGATTTG+AGG 0.407771 1_2:+12970151 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1_2:+12969911 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1_2:-12971354 Msa0057060:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1_2:-12969759 Msa0057060:CDS
CTTGTAAGATTTGAGGAAGA+AGG 0.437392 1_2:+12970158 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1_2:-12969948 Msa0057060:CDS
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1_2:-12972271 Msa0057060:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1_2:-12969716 Msa0057060:CDS
TACAGTATTAATCTAGAAGT+TGG 0.456693 1_2:-12970119 Msa0057060:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1_2:+12969932 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1_2:+12969950 None:intergenic
ACTTCTAGATTAATACTGTA+AGG 0.463803 1_2:+12970122 None:intergenic
AGAGTGTTCCGCAAGAGTGC+AGG 0.467497 1_2:-12970194 Msa0057060:CDS
TTCTTATACTGGATTTGGAA+TGG 0.468387 1_2:+12971267 None:intergenic
GGGCTTAATTTGAATCTTGG+AGG 0.468716 1_2:-12969903 Msa0057060:CDS
TGGCAATAGGTACAATATGC+AGG 0.471195 1_2:-12969703 Msa0057060:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1_2:-12972259 Msa0057060:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1_2:-12970226 Msa0057060:intron
AGTTATATAATATACCTTGT+TGG 0.483224 1_2:+12971244 None:intergenic
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1_2:+12969846 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1_2:-12972275 Msa0057060:CDS
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1_2:-12971310 Msa0057060:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1_2:+12972203 None:intergenic
GATGACTTCGCTTACTTGCA+TGG 0.492068 1_2:+12972473 None:intergenic
CCTAAATGCTGCATCATTGT+TGG 0.501547 1_2:+12970065 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1_2:-12970225 Msa0057060:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1_2:-12971516 Msa0057060:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1_2:-12972098 Msa0057060:CDS
GGAAGGAACTCGTGAGAAAG+AGG 0.513889 1_2:-12972238 Msa0057060:CDS
TGTACCTATTGCCATGAGTA+GGG 0.521891 1_2:+12969712 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1_2:-12969767 Msa0057060:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1_2:-12971502 Msa0057060:CDS
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1_2:-12969756 Msa0057060:CDS
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1_2:+12972211 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1_2:+12969711 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1_2:+12969966 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1_2:-12971434 Msa0057060:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1_2:+12972212 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1_2:-12969816 Msa0057060:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.549436 1_2:+12970071 None:intergenic
GAGAAGGATTCACCATTTCA+GGG 0.553123 1_2:-12969923 Msa0057060:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1_2:+12970186 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1_2:-12969939 Msa0057060:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1_2:+12970068 None:intergenic
TTGTAAGATTTGAGGAAGAA+GGG 0.560765 1_2:+12970159 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1_2:+12969779 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1_2:+12969809 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1_2:+12969852 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1_2:+12972204 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1_2:-12971515 Msa0057060:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1_2:-12972255 Msa0057060:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1_2:+12969639 None:intergenic
ACTACAGAAGTTCTAAGTGC+TGG 0.577816 1_2:-12969993 Msa0057060:CDS
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1_2:-12972097 Msa0057060:CDS
GTAAGTGATGAGCTCTTCAT+CGG 0.580741 1_2:+12972182 None:intergenic
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1_2:+12971400 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1_2:-12971416 Msa0057060:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1_2:-12972222 Msa0057060:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1_2:-12969945 Msa0057060:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1_2:+12969778 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1_2:-12969723 Msa0057060:CDS
GGCATATTATTATTAAAGCT+AGG 0.598474 1_2:+12970092 None:intergenic
AGTGTTACATCAGAATTGGT+TGG 0.599286 1_2:-12971371 Msa0057060:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1_2:+12969933 None:intergenic
GTGATGAGCTCTTCATCGGT+AGG 0.601835 1_2:+12972186 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1_2:-12971326 Msa0057060:CDS
ATATTCATGCATGACCCAGT+TGG 0.607778 1_2:+12971295 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1_2:-12969702 Msa0057060:CDS
CAAAATAGTTTGTGATGACG+TGG 0.610809 1_2:+12969878 None:intergenic
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1_2:+12969642 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1_2:-12971415 Msa0057060:CDS
GGGTACTATGGAAAATTGTG+TGG 0.654095 1_2:-12969682 Msa0057060:CDS
ATATTATTATTAAAGCTAGG+AGG 0.657871 1_2:+12970095 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1_2:-12970222 Msa0057060:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1_2:-12971258 Msa0057060:intron
GAAAACCACAGGGAAAGACA+AGG 0.680177 1_2:-12971405 Msa0057060:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1_2:-12971309 Msa0057060:CDS
GGATGAAATCGAAATCCGGG+AGG 0.762260 1_2:+12972207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCGATATATATATATATA+TGG + chr1_2:12970155-12970174 None:intergenic 10.0%
!! TTTATAAAAACAAAAAACTA+GGG - chr1_2:12970230-12970249 Msa0057060:intron 10.0%
!! AGAAAAATTAAAATTAGTTA+TGG - chr1_2:12970326-12970345 Msa0057060:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG - chr1_2:12970524-12970543 Msa0057060:intron 10.0%
!! ATGAAAAAAATTATGATAAT+AGG - chr1_2:12970949-12970968 Msa0057060:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG - chr1_2:12970950-12970969 Msa0057060:intron 10.0%
!! AAATTTAAAGATGTATAATA+GGG + chr1_2:12970982-12971001 None:intergenic 10.0%
!! AAAATTTAAAGATGTATAAT+AGG + chr1_2:12970983-12971002 None:intergenic 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG - chr1_2:12971359-12971378 Msa0057060:CDS 10.0%
!!! ACAAAAATTTAAACTTTTTA+TGG - chr1_2:12971573-12971592 Msa0057060:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG - chr1_2:12971574-12971593 Msa0057060:intron 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG - chr1_2:12971575-12971594 Msa0057060:intron 10.0%
!! GGTTAAGAAAATTAAATATA+GGG + chr1_2:12969728-12969747 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG + chr1_2:12969749-12969768 None:intergenic 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG + chr1_2:12969750-12969769 None:intergenic 15.0%
!!! TTTATACATGCTTTTAAATT+TGG - chr1_2:12969749-12969768 Msa0057060:CDS 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG + chr1_2:12970121-12970140 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG + chr1_2:12970227-12970246 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG - chr1_2:12970229-12970248 Msa0057060:intron 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG + chr1_2:12970472-12970491 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG - chr1_2:12970479-12970498 Msa0057060:intron 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG + chr1_2:12971233-12971252 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG + chr1_2:12971234-12971253 None:intergenic 15.0%
!!! ATTTTAGTTTCTTAAACTTT+TGG - chr1_2:12971396-12971415 Msa0057060:CDS 15.0%
!!! TAACGAATAGAATTTTTTTT+AGG - chr1_2:12971545-12971564 Msa0057060:intron 15.0%
!! GGGTTAAGAAAATTAAATAT+AGG + chr1_2:12969729-12969748 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG + chr1_2:12970122-12970141 None:intergenic 20.0%
!! TTATGTAAAATTTATAGGGA+AGG - chr1_2:12970596-12970615 Msa0057060:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG - chr1_2:12970780-12970799 Msa0057060:intron 20.0%
!! AGTTATATAATATACCTTGT+TGG + chr1_2:12970880-12970899 None:intergenic 20.0%
!! TTATTCAGACTATTATAAGA+TGG + chr1_2:12971137-12971156 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG + chr1_2:12971172-12971191 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG + chr1_2:12971203-12971222 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG - chr1_2:12971441-12971460 Msa0057060:CDS 20.0%
!! AATTCATTTCTTAAACTTGT+GGG - chr1_2:12971442-12971461 Msa0057060:CDS 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG + chr1_2:12971659-12971678 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG + chr1_2:12971700-12971719 None:intergenic 20.0%
!! ATATTATTATTAAAGCTAGG+AGG + chr1_2:12972029-12972048 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG - chr1_2:12972354-12972373 Msa0057060:intron 20.0%
!! AATAATAATAACTTAGGGTT+TGG - chr1_2:12972359-12972378 Msa0057060:intron 20.0%
!! AATTTTACATGCAAAGCAAT+AGG - chr1_2:12969992-12970011 Msa0057060:CDS 25.0%
!! TCCAGGTAAAATTTTATGTA+TGG - chr1_2:12970051-12970070 Msa0057060:CDS 25.0%
!! TCCATACATAAAATTTTACC+TGG + chr1_2:12970055-12970074 None:intergenic 25.0%
!! TTTTATAAAGCATGGATGAA+AGG + chr1_2:12970219-12970238 None:intergenic 25.0%
! AAGATGAAAGTCATATATTG+TGG + chr1_2:12970389-12970408 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG + chr1_2:12971222-12971241 None:intergenic 25.0%
!! AAGAGTATATTTGCAAAGTT+GGG + chr1_2:12971278-12971297 None:intergenic 25.0%
!! TAAGAGTATATTTGCAAAGT+TGG + chr1_2:12971279-12971298 None:intergenic 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG - chr1_2:12971370-12971389 Msa0057060:CDS 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG - chr1_2:12971371-12971390 Msa0057060:CDS 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG + chr1_2:12971695-12971714 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG - chr1_2:12971758-12971777 Msa0057060:intron 25.0%
! ACTTCTAGATTAATACTGTA+AGG + chr1_2:12972002-12972021 None:intergenic 25.0%
! TACAGTATTAATCTAGAAGT+TGG - chr1_2:12972002-12972021 Msa0057060:intron 25.0%
! GGCATATTATTATTAAAGCT+AGG + chr1_2:12972032-12972051 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG - chr1_2:12972353-12972372 Msa0057060:intron 25.0%
!! TTTTTGTGTGTTATTCCAGA+AGG - chr1_2:12969820-12969839 Msa0057060:CDS 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG - chr1_2:12969846-12969865 Msa0057060:CDS 30.0%
CTTTCATCTTTCTTGTGATA+TGG - chr1_2:12970399-12970418 Msa0057060:intron 30.0%
TCTTTCTTGTGATATGGTTA+AGG - chr1_2:12970405-12970424 Msa0057060:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG + chr1_2:12970857-12970876 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG + chr1_2:12971011-12971030 None:intergenic 30.0%
TTGTAAGATTTGAGGAAGAA+GGG + chr1_2:12971965-12971984 None:intergenic 30.0%
AAATGGGAATATTGATGCAT+TGG + chr1_2:12972158-12972177 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG + chr1_2:12972174-12972193 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG + chr1_2:12972213-12972232 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG - chr1_2:12972362-12972381 Msa0057060:intron 30.0%
TAACAACTTCTTTGTCCTTC+TGG + chr1_2:12969838-12969857 None:intergenic 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG - chr1_2:12969850-12969869 Msa0057060:CDS 35.0%
TAGCAAAGAAAGGAAGGATT+TGG - chr1_2:12969856-12969875 Msa0057060:CDS 35.0%
AGAAAGGAAGGATTTGGAAA+TGG - chr1_2:12969862-12969881 Msa0057060:CDS 35.0%
AGAGATCGTAAATATCCAAC+AGG - chr1_2:12970657-12970676 Msa0057060:intron 35.0%
ACTAATAGAGCAACAAACAC+TGG - chr1_2:12970687-12970706 Msa0057060:intron 35.0%
CAACAGTGTTACATCAGAAT+TGG - chr1_2:12970746-12970765 Msa0057060:intron 35.0%
AGTGTTACATCAGAATTGGT+TGG - chr1_2:12970750-12970769 Msa0057060:intron 35.0%
! GGTTGGTATGAAGAAAACTT+TGG - chr1_2:12970767-12970786 Msa0057060:intron 35.0%
! GTTGGTTCTTATACTGGATT+TGG + chr1_2:12970862-12970881 None:intergenic 35.0%
ATCCAGTATAAGAACCAACA+AGG - chr1_2:12970863-12970882 Msa0057060:intron 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG + chr1_2:12970868-12970887 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG - chr1_2:12971056-12971075 Msa0057060:intron 35.0%
TAAATAGACCTCACACAAAG+TGG + chr1_2:12971103-12971122 None:intergenic 35.0%
AGTCAAAACCGTCATAGTAT+TGG - chr1_2:12971648-12971667 Msa0057060:intron 35.0%
ATGTCGAATATATATGCAGC+AGG - chr1_2:12971887-12971906 Msa0057060:intron 35.0%
TATATATGCAGCAGGATGAA+TGG - chr1_2:12971895-12971914 Msa0057060:intron 35.0%
ATATATGCAGCAGGATGAAT+GGG - chr1_2:12971896-12971915 Msa0057060:intron 35.0%
CTTGTAAGATTTGAGGAAGA+AGG + chr1_2:12971966-12971985 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG - chr1_2:12972057-12972076 Msa0057060:intron 35.0%
! CTAAGGGTGATGATGATAAA+TGG + chr1_2:12972175-12972194 None:intergenic 35.0%
CATTTATCATCATCACCCTT+AGG - chr1_2:12972173-12972192 Msa0057060:CDS 35.0%
! TCAGGGCTTAATTTGAATCT+TGG - chr1_2:12972215-12972234 Msa0057060:CDS 35.0%
! CAAAATAGTTTGTGATGACG+TGG + chr1_2:12972246-12972265 None:intergenic 35.0%
! CGTCATCACAAACTATTTTG+AGG - chr1_2:12972246-12972265 Msa0057060:CDS 35.0%
ATTATTCTCTGCAGCAACAA+GGG + chr1_2:12972345-12972364 None:intergenic 35.0%
TATTATTCTCTGCAGCAACA+AGG + chr1_2:12972346-12972365 None:intergenic 35.0%
AATAATGCAAACCCTACTCA+TGG - chr1_2:12972398-12972417 Msa0057060:intron 35.0%
AGGAAGGATTTGGAAATGGA+AGG - chr1_2:12969866-12969885 Msa0057060:CDS 40.0%
GTAGGATGAAATCGAAATCC+GGG + chr1_2:12969920-12969939 None:intergenic 40.0%
GGTAGGATGAAATCGAAATC+CGG + chr1_2:12969921-12969940 None:intergenic 40.0%
GTAAGTGATGAGCTCTTCAT+CGG + chr1_2:12969942-12969961 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG - chr1_2:12970605-12970624 Msa0057060:intron 40.0%
TTTATAGGGAAGGCCAAGAT+GGG - chr1_2:12970606-12970625 Msa0057060:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG + chr1_2:12970622-12970641 None:intergenic 40.0%
CCAAGATGGGTACAAAAGAA+TGG - chr1_2:12970619-12970638 Msa0057060:intron 40.0%
! CTATTAGTTCTCACACCTGT+TGG + chr1_2:12970675-12970694 None:intergenic 40.0%
GAGCAACAAACACTGGATAT+TGG - chr1_2:12970694-12970713 Msa0057060:intron 40.0%
ACTGGATATTGGAAAACCAC+AGG - chr1_2:12970705-12970724 Msa0057060:intron 40.0%
CTGGATATTGGAAAACCACA+GGG - chr1_2:12970706-12970725 Msa0057060:intron 40.0%
TAGAGGAGAGAAAACCAACT+GGG - chr1_2:12970812-12970831 Msa0057060:intron 40.0%
ATATTCATGCATGACCCAGT+TGG + chr1_2:12970829-12970848 None:intergenic 40.0%
TATCCAGAAACACACACACA+TGG - chr1_2:12971835-12971854 Msa0057060:intron 40.0%
GACTGCTCTTGTAAGATTTG+AGG + chr1_2:12971973-12971992 None:intergenic 40.0%
AAATGCTGCATCATTGTTGG+TGG + chr1_2:12972056-12972075 None:intergenic 40.0%
CCTAAATGCTGCATCATTGT+TGG + chr1_2:12972059-12972078 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG - chr1_2:12972056-12972075 Msa0057060:intron 40.0%
! GCAACTCATTTTCAGCTCTA+TGG - chr1_2:12972089-12972108 Msa0057060:CDS 40.0%
! CTCATTTTCAGCTCTATGGA+AGG - chr1_2:12972093-12972112 Msa0057060:CDS 40.0%
!! ACTACAGAAGTTCTAAGTGC+TGG - chr1_2:12972128-12972147 Msa0057060:CDS 40.0%
TTATCATCATCACCCTTAGG+AGG - chr1_2:12972176-12972195 Msa0057060:CDS 40.0%
GAGAAGGATTCACCATTTCA+GGG - chr1_2:12972198-12972217 Msa0057060:CDS 40.0%
! GGGCTTAATTTGAATCTTGG+AGG - chr1_2:12972218-12972237 Msa0057060:CDS 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG + chr1_2:12972272-12972291 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG - chr1_2:12972274-12972293 Msa0057060:CDS 40.0%
GCCATAGTATGAGTAGTTGA+TGG + chr1_2:12972278-12972297 None:intergenic 40.0%
ATTTGCACCTGTCATCATGT+TGG + chr1_2:12972315-12972334 None:intergenic 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG - chr1_2:12972365-12972384 Msa0057060:intron 40.0%
TGTACCTATTGCCATGAGTA+GGG + chr1_2:12972412-12972431 None:intergenic 40.0%
TTGTACCTATTGCCATGAGT+AGG + chr1_2:12972413-12972432 None:intergenic 40.0%
TGGCAATAGGTACAATATGC+AGG - chr1_2:12972418-12972437 Msa0057060:intron 40.0%
GGCAATAGGTACAATATGCA+GGG - chr1_2:12972419-12972438 Msa0057060:intron 40.0%
! GTACAATATGCAGGGTACTA+TGG - chr1_2:12972427-12972446 Msa0057060:intron 40.0%
GGGTACTATGGAAAATTGTG+TGG - chr1_2:12972439-12972458 Msa0057060:intron 40.0%
GTGTGGATCTTGATCATTAC+TGG - chr1_2:12972456-12972475 Msa0057060:intron 40.0%
AAATCGAAATCCGGGAGGTA+GGG + chr1_2:12969912-12969931 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG - chr1_2:12970023-12970042 Msa0057060:CDS 45.0%
TCTCAACAAATGCGAGCCAT+GGG - chr1_2:12970024-12970043 Msa0057060:CDS 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG + chr1_2:12970043-12970062 None:intergenic 45.0%
GAAAACCACAGGGAAAGACA+AGG - chr1_2:12970716-12970735 Msa0057060:intron 45.0%
AATCTCCTTGTCTTTCCCTG+TGG + chr1_2:12970724-12970743 None:intergenic 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG + chr1_2:12970813-12970832 None:intergenic 45.0%
CTAGAGGAGAGAAAACCAAC+TGG - chr1_2:12970811-12970830 Msa0057060:intron 45.0%
TAGACCTCACACAAAGTGGT+GGG + chr1_2:12971099-12971118 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG + chr1_2:12971100-12971119 None:intergenic 45.0%
TGTCCATGTGTGTGTGTTTC+TGG + chr1_2:12971841-12971860 None:intergenic 45.0%
GTGAATCCTTCTCCTCCTAA+GGG + chr1_2:12972191-12972210 None:intergenic 45.0%
GGAGAAGGATTCACCATTTC+AGG - chr1_2:12972197-12972216 Msa0057060:CDS 45.0%
TTCAGCTCCAACATGATGAC+AGG - chr1_2:12972305-12972324 Msa0057060:intron 45.0%
CAAACCCTACTCATGGCAAT+AGG - chr1_2:12972405-12972424 Msa0057060:intron 45.0%
!! TTTAATTATGTAAAATTTAT+AGG - chr1_2:12970591-12970610 Msa0057060:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG - chr1_2:12970592-12970611 Msa0057060:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG + chr1_2:12971497-12971516 None:intergenic 5.0%
!! TAATAATATATTTAAGAATA+AGG - chr1_2:12971600-12971619 Msa0057060:intron 5.0%
!! AATAATATATTTAAGAATAA+GGG - chr1_2:12971601-12971620 Msa0057060:intron 5.0%
GGAAGGAACTCGTGAGAAAG+AGG - chr1_2:12969883-12969902 Msa0057060:CDS 50.0%
AAAGAGGAAACCCTACCTCC+CGG - chr1_2:12969899-12969918 Msa0057060:CDS 50.0%
GAAATCGAAATCCGGGAGGT+AGG + chr1_2:12969913-12969932 None:intergenic 50.0%
GGATGAAATCGAAATCCGGG+AGG + chr1_2:12969917-12969936 None:intergenic 50.0%
GTGATGAGCTCTTCATCGGT+AGG + chr1_2:12969938-12969957 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG - chr1_2:12970795-12970814 Msa0057060:intron 50.0%
ATGTCCCACCACTTTGTGTG+AGG - chr1_2:12971092-12971111 Msa0057060:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG - chr1_2:12971899-12971918 Msa0057060:intron 50.0%
TCTTTGCACCTGCACTCTTG+CGG + chr1_2:12971938-12971957 None:intergenic 50.0%
! TGCTGCATCATTGTTGGTGG+TGG + chr1_2:12972053-12972072 None:intergenic 50.0%
TCATCACCCTTAGGAGGAGA+AGG - chr1_2:12972182-12972201 Msa0057060:CDS 50.0%
GGTGAATCCTTCTCCTCCTA+AGG + chr1_2:12972192-12972211 None:intergenic 50.0%
! AGAGTGTTCCGCAAGAGTGC+AGG - chr1_2:12971927-12971946 Msa0057060:intron 55.0%
TGCGAGCCATGGGAGCTTCC+AGG - chr1_2:12970034-12970053 Msa0057060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12969650 12972493 12969650 ID=Msa0057060;Name=Msa0057060
chr1_2 mRNA 12969650 12972493 12969650 ID=Msa0057060-mRNA-1;Parent=Msa0057060;Name=Msa0057060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.25|0|0.8|0.75|0.6|5|0|355
chr1_2 exon 12972488 12972493 12972488 ID=Msa0057060-mRNA-1:exon:5042;Parent=Msa0057060-mRNA-1
chr1_2 exon 12972088 12972304 12972088 ID=Msa0057060-mRNA-1:exon:5041;Parent=Msa0057060-mRNA-1
chr1_2 exon 12971480 12971530 12971480 ID=Msa0057060-mRNA-1:exon:5040;Parent=Msa0057060-mRNA-1
chr1_2 exon 12971259 12971464 12971259 ID=Msa0057060-mRNA-1:exon:5039;Parent=Msa0057060-mRNA-1
chr1_2 exon 12969650 12970237 12969650 ID=Msa0057060-mRNA-1:exon:5038;Parent=Msa0057060-mRNA-1
chr1_2 CDS 12972488 12972493 12972488 ID=Msa0057060-mRNA-1:cds;Parent=Msa0057060-mRNA-1
chr1_2 CDS 12972088 12972304 12972088 ID=Msa0057060-mRNA-1:cds;Parent=Msa0057060-mRNA-1
chr1_2 CDS 12971480 12971530 12971480 ID=Msa0057060-mRNA-1:cds;Parent=Msa0057060-mRNA-1
chr1_2 CDS 12971259 12971464 12971259 ID=Msa0057060-mRNA-1:cds;Parent=Msa0057060-mRNA-1
chr1_2 CDS 12969650 12970237 12969650 ID=Msa0057060-mRNA-1:cds;Parent=Msa0057060-mRNA-1
Gene Sequence

>Msa0057060

ATGCAAAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACTCGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAGCTCATCACTTACTATCTTGTAAACAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTGTTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCCTCAAATCTTACAAGAGCAGTCATGAATCCTTACAGTATTAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATGCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCAACTCATTTTCAGCTCTATGGAAGGAACTACATCAACACTACAGAAGTTCTAAGTGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGTTCCACGTCATCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGAAAATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>Msa0057060

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSNLTRAVMNPYSINLEVGPPSFNNNMPPPTMMQHLGLDSATHFQLYGRNYINTTEVLSAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMENCVDLDHYWPPSY*