AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057110 MtrunA17_Chr1g0147421 95.856 362 8 3 4 359 1 361 0.0 713
Msa0057110 MtrunA17_Chr3g0139331 58.402 363 111 15 20 359 1 346 2.28e-112 331
Msa0057110 MtrunA17_Chr6g0484441 72.500 160 35 4 27 181 2 157 4.18e-75 235
Msa0057110 MtrunA17_Chr2g0316971 69.677 155 38 3 30 176 23 176 2.36e-73 232
Msa0057110 MtrunA17_Chr4g0060931 62.941 170 52 4 20 181 7 173 5.81e-70 223
Msa0057110 MtrunA17_Chr3g0091921 62.500 168 51 5 23 181 8 172 4.78e-68 216
Msa0057110 MtrunA17_Chr6g0461661 60.000 170 59 3 30 191 18 186 1.87e-66 214
Msa0057110 MtrunA17_Chr7g0253011 61.628 172 54 5 30 191 17 186 8.85e-66 213
Msa0057110 MtrunA17_Chr6g0453451 58.564 181 60 6 9 181 3 176 4.73e-65 209
Msa0057110 MtrunA17_Chr3g0144271 62.420 157 49 3 4 155 2 153 5.17e-62 204
Msa0057110 MtrunA17_Chr7g0217721 56.471 170 50 4 33 181 22 188 5.21e-57 189
Msa0057110 MtrunA17_Chr2g0312321 55.090 167 61 5 27 185 8 168 7.80e-55 182
Msa0057110 MtrunA17_Chr1g0183741 50.314 159 70 3 22 175 2 156 6.45e-53 176
Msa0057110 MtrunA17_Chr7g0261411 44.878 205 99 4 22 221 2 197 4.08e-51 172
Msa0057110 MtrunA17_Chr2g0309331 45.411 207 95 8 27 223 7 205 7.61e-51 172
Msa0057110 MtrunA17_Chr7g0217711 61.481 135 44 3 33 162 22 153 1.92e-50 166
Msa0057110 MtrunA17_Chr4g0017921 56.494 154 54 5 30 175 8 156 5.66e-50 171
Msa0057110 MtrunA17_Chr2g0318101 48.276 174 66 4 23 176 8 177 1.32e-49 170
Msa0057110 MtrunA17_Chr5g0417791 47.778 180 71 6 30 191 3 177 5.08e-49 166
Msa0057110 MtrunA17_Chr7g0252971 46.524 187 76 5 27 193 5 187 7.60e-49 167
Msa0057110 MtrunA17_Chr3g0124761 50.581 172 66 5 27 186 4 168 8.68e-49 166
Msa0057110 MtrunA17_Chr7g0263931 49.398 166 73 3 20 175 1 165 1.15e-48 166
Msa0057110 MtrunA17_Chr5g0398971 51.948 154 64 4 30 175 7 158 1.16e-48 167
Msa0057110 MtrunA17_Chr4g0018391 53.247 154 60 5 30 175 7 156 1.36e-48 167
Msa0057110 MtrunA17_Chr8g0359921 50.000 168 72 5 29 187 13 177 2.74e-48 166
Msa0057110 MtrunA17_Chr4g0056541 53.247 154 60 5 30 175 7 156 2.87e-48 166
Msa0057110 MtrunA17_Chr2g0318081 51.553 161 65 5 29 181 15 170 4.22e-48 166
Msa0057110 MtrunA17_Chr2g0309891 55.063 158 57 7 29 176 5 158 5.97e-48 165
Msa0057110 MtrunA17_Chr6g0481091 53.205 156 62 5 30 177 6 158 7.40e-48 162
Msa0057110 MtrunA17_Chr4g0047841 44.670 197 65 6 30 194 15 199 2.80e-47 163
Msa0057110 MtrunA17_Chr3g0109821 53.503 157 61 5 29 176 5 158 4.98e-47 169
Msa0057110 MtrunA17_Chr8g0346001 45.652 184 79 5 27 192 12 192 7.05e-47 164
Msa0057110 MtrunA17_Chr5g0405211 49.045 157 68 5 27 175 5 157 1.07e-46 162
Msa0057110 MtrunA17_Chr5g0433781 53.846 156 61 5 29 176 5 157 1.24e-46 167
Msa0057110 MtrunA17_Chr1g0200561 46.784 171 79 5 19 181 8 174 3.23e-46 160
Msa0057110 MtrunA17_Chr8g0384721 47.977 173 72 6 20 182 1 165 6.59e-46 158
Msa0057110 MtrunA17_Chr4g0042561 47.977 173 71 6 20 180 1 166 6.72e-46 157
Msa0057110 MtrunA17_Chr2g0326361 45.128 195 81 5 29 201 13 203 6.84e-46 159
Msa0057110 MtrunA17_Chr7g0214071 47.568 185 71 7 27 193 12 188 1.33e-45 156
Msa0057110 MtrunA17_Chr1g0197361 49.045 157 71 3 32 181 10 164 2.29e-45 163
Msa0057110 MtrunA17_Chr3g0092671 50.318 157 69 3 32 181 7 161 4.40e-45 162
Msa0057110 MtrunA17_Chr8g0372121 45.679 162 76 5 27 180 3 160 6.41e-45 156
Msa0057110 MtrunA17_Chr8g0361731 44.509 173 80 4 19 176 3 174 1.56e-43 155
Msa0057110 MtrunA17_Chr3g0130731 45.882 170 79 5 27 187 4 169 3.39e-43 151
Msa0057110 MtrunA17_Chr5g0417001 43.902 164 77 3 27 176 11 173 1.96e-41 149
Msa0057110 MtrunA17_Chr5g0400461 47.239 163 71 6 29 179 5 164 7.70e-41 146
Msa0057110 MtrunA17_Chr6g0453131 41.899 179 83 5 13 176 2 174 1.79e-40 146
Msa0057110 MtrunA17_Chr3g0128151 51.613 155 64 5 29 175 21 172 1.63e-39 147
Msa0057110 MtrunA17_Chr4g0054791 42.857 189 83 7 20 194 1 178 6.64e-39 140
Msa0057110 MtrunA17_Chr4g0076731 43.902 164 83 5 26 184 50 209 1.35e-38 142
Msa0057110 MtrunA17_Chr1g0197351 48.447 161 66 5 29 175 41 198 2.39e-38 142
Msa0057110 MtrunA17_Chr5g0442771 39.429 175 89 4 24 182 12 185 2.86e-38 139
Msa0057110 MtrunA17_Chr5g0428991 50.000 154 66 5 30 175 25 175 5.52e-38 143
Msa0057110 MtrunA17_Chr3g0130101 46.104 154 72 5 32 177 9 159 5.36e-37 136
Msa0057110 MtrunA17_Chr3g0113001 62.162 111 31 3 80 181 14 122 3.54e-36 133
Msa0057110 MtrunA17_Chr3g0128111 48.026 152 68 5 33 176 45 193 4.79e-36 131
Msa0057110 MtrunA17_Chr8g0385991 35.747 221 114 6 30 229 14 227 7.45e-36 130
Msa0057110 MtrunA17_Chr4g0038751 41.875 160 82 4 27 180 12 166 1.28e-35 131
Msa0057110 MtrunA17_Chr1g0201021 47.500 160 69 7 32 181 21 175 1.28e-35 136
Msa0057110 MtrunA17_Chr2g0311651 38.624 189 94 6 14 181 5 192 3.20e-35 130
Msa0057110 MtrunA17_Chr2g0311661 37.766 188 96 5 14 181 5 191 1.09e-34 129
Msa0057110 MtrunA17_Chr8g0364791 43.506 154 76 5 30 175 6 156 2.97e-34 131
Msa0057110 MtrunA17_Chr3g0131911 38.140 215 105 9 30 229 14 215 1.98e-33 124
Msa0057110 MtrunA17_Chr8g0384201 42.208 154 78 5 30 175 6 156 2.14e-32 126
Msa0057110 MtrunA17_Chr4g0050701 41.026 156 77 4 30 176 11 160 8.90e-32 118
Msa0057110 MtrunA17_Chr4g0026141 44.444 135 65 4 27 152 2 135 3.74e-31 119
Msa0057110 MtrunA17_Chr8g0345671 43.333 150 73 4 30 172 11 155 3.15e-30 119
Msa0057110 MtrunA17_Chr8g0345701 43.243 148 60 4 25 151 2 146 1.52e-29 112
Msa0057110 MtrunA17_Chr2g0321631 42.857 140 63 6 31 157 5 140 4.98e-29 112
Msa0057110 MtrunA17_Chr7g0266701 35.673 171 93 6 28 182 2 171 1.72e-28 111
Msa0057110 MtrunA17_Chr8g0345711 41.379 145 75 4 28 165 10 151 2.23e-28 108
Msa0057110 MtrunA17_Chr8g0345691 44.186 129 64 3 30 151 12 139 8.23e-28 112
Msa0057110 MtrunA17_Chr3g0113031 53.043 115 46 4 97 205 11 123 2.94e-27 108
Msa0057110 MtrunA17_Chr8g0345721 33.854 192 81 5 5 151 1 191 4.88e-25 100
Msa0057110 MtrunA17_Chr2g0321741 38.356 146 74 5 59 198 20 155 5.59e-25 103
Msa0057110 MtrunA17_Chr8g0345731 37.013 154 86 5 28 172 22 173 8.77e-25 99.4
Msa0057110 MtrunA17_Chr8g0384351 41.781 146 68 5 30 175 10 138 1.07e-23 96.7
Msa0057110 MtrunA17_Chr3g0130321 36.932 176 92 7 30 192 7 176 2.64e-23 96.3
Msa0057110 MtrunA17_Chr7g0243371 51.899 79 33 1 85 158 18 96 3.88e-21 87.8
Msa0057110 MtrunA17_Chr8g0345741 38.983 118 64 3 41 151 2 118 5.03e-20 85.9
Msa0057110 MtrunA17_Chr7g0251661 35.606 132 77 4 27 153 7 135 3.98e-18 80.5
Msa0057110 MtrunA17_Chr7g0251651 34.109 129 77 4 30 153 18 143 8.13e-17 77.8
Msa0057110 MtrunA17_Chr3g0113011 60.000 50 19 1 30 79 19 67 7.05e-16 71.6
Msa0057110 MtrunA17_Chr3g0113041 63.043 46 16 1 34 79 23 67 6.14e-15 69.3
Msa0057110 MtrunA17_Chr7g0251671 31.818 132 82 4 27 153 7 135 4.68e-14 69.3
Msa0057110 MtrunA17_Chr4g0040541 31.138 167 90 6 30 176 48 209 2.36e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057110 AT2G24430.2 50.562 356 102 10 24 356 10 314 7.45e-98 293
Msa0057110 AT2G24430.1 50.562 356 102 10 24 356 10 314 7.45e-98 293
Msa0057110 AT3G18400.1 70.625 160 39 3 27 181 2 158 1.37e-75 236
Msa0057110 AT5G53950.1 68.125 160 42 3 28 179 15 173 1.02e-72 231
Msa0057110 AT5G61430.1 64.706 170 49 4 25 186 11 177 3.97e-70 223
Msa0057110 AT3G15170.1 66.875 160 44 3 25 176 15 173 2.76e-69 220
Msa0057110 AT5G07680.2 65.455 165 46 4 30 186 3 164 2.81e-69 220
Msa0057110 AT5G07680.1 61.878 181 54 5 18 186 1 178 2.97e-69 220
Msa0057110 AT1G76420.1 58.791 182 63 3 4 180 2 176 2.01e-67 216
Msa0057110 AT5G39610.1 60.326 184 54 6 25 200 15 187 5.29e-66 211
Msa0057110 AT5G18270.2 66.234 154 42 4 30 175 21 172 1.21e-63 206
Msa0057110 AT5G18270.1 65.584 154 43 4 30 175 21 172 4.39e-63 204
Msa0057110 AT3G29035.1 58.470 183 64 5 11 184 5 184 2.20e-62 202
Msa0057110 AT3G04060.1 58.011 181 61 5 21 193 11 184 2.71e-61 200
Msa0057110 AT4G27410.2 50.877 171 69 6 22 181 2 168 1.04e-52 176
Msa0057110 AT3G12977.1 46.117 206 84 7 27 212 15 213 1.30e-52 176
Msa0057110 AT1G56010.2 38.298 282 144 10 27 289 16 286 4.63e-51 173
Msa0057110 AT4G10350.1 56.129 155 56 5 30 175 9 160 1.88e-50 172
Msa0057110 AT1G33280.1 56.494 154 54 5 30 175 8 156 5.18e-50 170
Msa0057110 AT3G10500.1 54.658 161 62 5 29 181 8 165 1.01e-49 175
Msa0057110 AT4G27410.3 46.809 188 68 7 22 181 2 185 2.61e-49 168
Msa0057110 AT4G28530.1 46.552 174 70 3 22 175 2 172 1.44e-48 167
Msa0057110 AT1G65910.1 52.795 161 65 5 29 181 5 162 1.79e-48 173
Msa0057110 AT2G18060.3 33.642 324 181 10 29 329 8 320 1.86e-48 167
Msa0057110 AT2G18060.1 33.642 324 181 10 29 329 8 320 1.86e-48 167
Msa0057110 AT1G69490.1 51.220 164 67 5 27 180 6 166 2.03e-48 164
Msa0057110 AT3G04070.2 48.588 177 74 5 23 183 3 178 2.20e-48 167
Msa0057110 AT1G12260.2 51.266 158 65 5 30 179 7 160 2.57e-48 166
Msa0057110 AT1G12260.1 51.266 158 65 5 30 179 7 160 3.29e-48 167
Msa0057110 AT1G61110.1 49.112 169 66 5 30 180 16 182 6.61e-48 165
Msa0057110 AT5G04410.1 53.416 161 64 5 29 181 8 165 6.81e-48 170
Msa0057110 AT1G52890.1 50.943 159 69 4 29 181 13 168 8.06e-48 164
Msa0057110 AT1G01720.1 50.617 162 66 5 30 181 7 164 1.51e-47 163
Msa0057110 AT1G62700.1 51.899 158 64 5 30 179 7 160 1.62e-47 166
Msa0057110 AT1G62700.2 51.899 158 64 5 30 179 7 160 1.62e-47 166
Msa0057110 AT3G15500.1 50.943 159 69 4 29 181 13 168 2.48e-47 163
Msa0057110 AT4G36160.1 50.323 155 65 5 29 175 9 159 5.26e-47 164
Msa0057110 AT4G36160.3 50.323 155 65 5 29 175 9 159 5.26e-47 164
Msa0057110 AT3G03200.1 54.487 156 59 5 29 175 5 157 5.55e-47 166
Msa0057110 AT3G17730.1 53.247 154 61 5 30 175 6 156 5.79e-47 160
Msa0057110 AT4G36160.2 50.323 155 65 5 29 175 13 163 6.07e-47 164
Msa0057110 AT1G71930.2 48.408 157 69 5 27 175 6 158 1.02e-46 162
Msa0057110 AT1G71930.1 48.408 157 69 5 27 175 6 158 1.02e-46 162
Msa0057110 AT5G62380.2 49.689 161 69 5 30 182 7 163 2.09e-46 161
Msa0057110 AT5G62380.1 49.689 161 69 5 30 182 7 163 2.09e-46 161
Msa0057110 AT3G61910.1 45.055 182 75 5 27 186 8 186 4.39e-46 160
Msa0057110 AT2G46770.1 47.953 171 64 6 27 175 13 180 4.59e-46 161
Msa0057110 AT3G04070.1 44.560 193 74 5 23 183 3 194 4.89e-46 161
Msa0057110 AT5G17260.1 53.846 156 60 5 29 175 5 157 7.25e-46 163
Msa0057110 AT5G08790.1 49.701 167 69 5 27 182 4 166 1.04e-45 158
Msa0057110 AT1G79580.3 53.205 156 59 6 29 175 16 166 2.44e-45 159
Msa0057110 AT1G79580.5 53.205 156 59 6 29 175 16 166 2.44e-45 159
Msa0057110 AT1G79580.4 53.205 156 59 6 29 175 16 166 2.44e-45 159
Msa0057110 AT1G79580.2 53.205 156 59 6 29 175 16 166 2.44e-45 159
Msa0057110 AT1G79580.1 53.205 156 59 6 29 175 16 166 2.44e-45 159
Msa0057110 AT5G63790.1 50.595 168 66 6 27 182 47 209 3.66e-45 157
Msa0057110 AT5G63790.2 50.595 168 66 6 27 182 57 219 4.26e-45 157
Msa0057110 AT5G66300.1 48.387 155 69 4 29 175 11 162 4.28e-45 156
Msa0057110 AT3G10490.1 50.909 165 67 6 22 176 19 179 5.86e-45 154
Msa0057110 AT3G10480.1 54.430 158 56 7 29 175 26 178 1.32e-44 159
Msa0057110 AT3G10480.2 53.205 156 60 6 29 175 26 177 4.65e-44 157
Msa0057110 AT3G10490.2 51.220 164 66 6 22 175 19 178 1.20e-43 157
Msa0057110 AT1G77450.1 48.780 164 65 5 30 181 10 166 3.53e-43 150
Msa0057110 AT4G17980.1 49.686 159 65 5 29 175 5 160 3.84e-43 150
Msa0057110 AT3G15510.1 44.910 167 68 4 34 180 21 183 8.22e-43 152
Msa0057110 AT4G17980.2 49.686 159 65 5 29 175 5 160 9.91e-43 150
Msa0057110 AT1G32770.1 45.087 173 73 6 27 180 13 182 4.45e-42 150
Msa0057110 AT5G46590.1 49.032 155 68 5 30 175 6 158 5.03e-42 149
Msa0057110 AT5G46590.2 54.198 131 51 4 30 153 6 134 5.45e-42 148
Msa0057110 AT5G13180.1 47.771 157 72 4 30 180 14 166 8.98e-42 147
Msa0057110 AT1G26870.1 42.286 175 85 3 17 176 3 176 9.26e-42 151
Msa0057110 AT5G61430.2 63.478 115 32 3 80 186 2 114 1.02e-41 147
Msa0057110 AT1G33060.1 50.000 160 69 5 28 179 22 178 1.22e-41 154
Msa0057110 AT1G33060.2 50.000 160 69 5 28 179 22 178 1.26e-41 154
Msa0057110 AT1G54330.1 50.311 161 66 6 29 181 5 159 1.66e-41 147
Msa0057110 AT5G39820.1 39.216 204 84 6 1 176 1 192 2.36e-41 148
Msa0057110 AT4G35580.1 51.282 156 65 5 28 175 7 159 2.74e-41 151
Msa0057110 AT4G35580.3 51.282 156 65 5 28 175 7 159 3.91e-41 151
Msa0057110 AT4G35580.2 51.282 156 65 5 28 175 7 159 3.96e-41 151
Msa0057110 AT2G02450.1 45.732 164 80 5 32 190 53 212 4.00e-40 145
Msa0057110 AT2G02450.2 45.732 164 80 5 32 190 53 212 4.52e-40 146
Msa0057110 AT1G32870.3 47.802 182 77 7 10 181 29 202 7.66e-40 148
Msa0057110 AT1G34180.3 48.101 158 71 5 32 181 18 172 9.68e-40 146
Msa0057110 AT1G52880.1 48.447 161 60 5 34 175 21 177 1.28e-39 143
Msa0057110 AT1G32870.1 50.625 160 68 5 30 181 10 166 2.04e-39 147
Msa0057110 AT1G32870.2 50.625 160 68 5 30 181 10 166 2.20e-39 146
Msa0057110 AT2G43000.1 41.718 163 85 4 25 180 13 172 2.58e-39 141
Msa0057110 AT1G34190.1 48.101 158 71 5 32 181 18 172 4.19e-39 146
Msa0057110 AT1G34180.1 48.101 158 71 5 32 181 18 172 4.61e-39 146
Msa0057110 AT3G10480.3 45.550 191 55 8 29 175 26 211 9.70e-39 145
Msa0057110 AT1G34180.4 44.706 170 71 5 32 181 18 184 6.80e-38 141
Msa0057110 AT2G33480.1 48.026 152 67 5 30 175 15 160 9.03e-38 137
Msa0057110 AT5G09330.5 47.436 156 71 5 30 177 6 158 1.70e-37 141
Msa0057110 AT5G09330.2 47.436 156 71 5 30 177 6 158 1.70e-37 141
Msa0057110 AT5G09330.4 47.436 156 71 5 30 177 6 158 1.70e-37 141
Msa0057110 AT5G09330.3 47.436 156 71 5 30 177 6 158 1.70e-37 141
Msa0057110 AT5G09330.1 47.436 156 71 5 30 177 6 158 1.70e-37 141
Msa0057110 AT1G34180.2 44.706 170 71 5 32 181 18 184 2.81e-37 141
Msa0057110 AT5G24590.2 43.478 184 90 6 29 200 12 193 5.28e-37 139
Msa0057110 AT2G33480.2 47.436 156 60 6 30 175 15 158 5.44e-37 134
Msa0057110 AT3G49530.2 47.436 156 72 5 28 175 11 164 7.45e-37 137
Msa0057110 AT2G17040.1 41.935 155 79 4 32 180 8 157 7.80e-37 134
Msa0057110 AT5G64060.1 43.590 156 77 5 30 177 6 158 9.39e-37 136
Msa0057110 AT3G49530.1 47.799 159 67 6 28 175 11 164 1.57e-36 138
Msa0057110 AT1G32510.1 43.976 166 78 5 30 181 6 170 5.23e-36 132
Msa0057110 AT2G27300.1 46.452 155 67 6 29 177 13 157 1.49e-35 132
Msa0057110 AT5G22290.1 42.169 166 78 6 29 188 20 173 4.50e-33 126
Msa0057110 AT3G12910.1 37.297 185 92 7 21 182 9 192 1.73e-32 124
Msa0057110 AT1G56010.1 44.521 146 61 5 80 208 2 144 1.57e-31 120
Msa0057110 AT3G12977.2 44.444 153 59 6 80 212 14 160 3.72e-31 118
Msa0057110 AT4G28530.2 44.118 136 56 2 22 137 2 137 2.82e-30 118
Msa0057110 AT5G04395.1 43.709 151 65 5 22 153 20 169 4.63e-30 114
Msa0057110 AT3G44290.2 45.238 126 60 4 32 151 16 138 6.06e-30 115
Msa0057110 AT3G44290.1 38.333 180 86 7 32 201 16 180 2.73e-29 115
Msa0057110 AT4G10350.2 53.211 109 40 4 76 175 7 113 8.58e-29 113
Msa0057110 AT5G64530.1 38.462 169 77 6 30 181 3 161 9.58e-28 107
Msa0057110 AT5G64530.2 45.238 126 57 4 30 153 3 118 1.34e-27 106
Msa0057110 AT3G44350.2 34.940 166 96 4 28 182 3 167 9.52e-25 101
Msa0057110 AT4G01550.1 37.748 151 82 4 33 175 7 153 9.98e-24 102
Msa0057110 AT3G44350.1 37.762 143 79 3 28 161 3 144 2.66e-23 95.1
Msa0057110 AT4G01520.1 33.696 184 109 5 31 205 5 184 2.79e-22 95.9
Msa0057110 AT4G01540.4 35.669 157 88 5 33 180 7 159 5.60e-22 96.3
Msa0057110 AT4G01540.3 35.669 157 88 5 33 180 7 159 9.31e-22 96.3
Msa0057110 AT4G01540.2 35.032 157 89 5 33 180 7 159 1.19e-21 95.9
Msa0057110 AT4G01540.1 35.032 157 89 5 33 180 7 159 1.62e-21 95.9
Msa0057110 AT1G02230.1 41.538 130 64 6 31 151 4 130 2.05e-21 94.4
Msa0057110 AT5G22380.1 38.636 132 64 5 33 151 8 135 2.94e-21 91.7
Msa0057110 AT2G33480.3 50.000 96 40 3 86 175 10 103 1.01e-20 89.7
Msa0057110 AT3G10490.4 56.962 79 30 2 99 175 2 78 1.12e-20 92.0
Msa0057110 AT3G10490.3 56.962 79 30 2 99 175 2 78 1.12e-20 92.0
Msa0057110 AT3G04420.2 37.226 137 76 4 31 159 4 138 2.10e-20 90.5
Msa0057110 AT3G04420.1 37.226 137 76 4 31 159 4 138 3.28e-20 90.9
Msa0057110 AT2G18060.2 34.266 143 89 3 104 244 2 141 5.58e-20 89.0
Msa0057110 AT1G02250.1 36.154 130 71 5 31 151 4 130 1.12e-17 83.6
Msa0057110 AT1G01010.1 37.405 131 70 5 33 151 6 136 2.43e-17 83.2
Msa0057110 AT2G43000.2 41.176 85 46 2 93 175 7 89 8.20e-17 78.6
Msa0057110 AT3G04430.1 33.333 150 81 5 36 167 6 154 1.67e-16 77.4
Msa0057110 AT1G02220.1 35.659 129 70 5 31 151 4 127 2.05e-16 80.1
Msa0057110 AT5G50820.1 32.624 141 73 5 30 160 17 145 4.21e-16 76.3
Msa0057110 AT5G14000.1 33.750 160 91 7 30 181 15 167 4.29e-15 73.9
Msa0057110 AT5G22290.2 45.238 84 35 3 105 188 2 74 4.57e-14 71.6
Msa0057110 AT5G14000.2 33.571 140 81 5 30 162 15 149 4.89e-14 69.7
Msa0057110 AT1G28470.1 29.787 188 101 7 29 191 76 257 5.72e-12 66.2
Msa0057110 AT3G56530.1 31.293 147 92 5 26 165 48 192 6.44e-12 66.2
Msa0057110 AT3G55210.1 28.235 170 99 6 29 180 10 174 6.81e-12 65.9
Msa0057110 AT4G28500.1 30.357 168 90 7 30 176 59 220 1.03e-11 65.5

Find 98 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1_2:-13015417 Msa0057110:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1_2:-13015558 Msa0057110:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1_2:+13015442 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1_2:+13016767 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1_2:+13016761 None:intergenic
GCTACTCATTTCCAGCTCTA+TGG 0.284860 1_2:-13015525 Msa0057110:CDS
CAACAATGATGCAGCATTTA+GGG 0.296732 1_2:-13015557 Msa0057110:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1_2:-13017795 Msa0057110:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1_2:-13015340 Msa0057110:CDS
GTGTGGATCTTGATCATTAC+TGG 0.322379 1_2:-13015158 Msa0057110:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1_2:-13015399 Msa0057110:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1_2:-13016880 Msa0057110:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1_2:-13016932 Msa0057110:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1_2:-13015255 Msa0057110:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1_2:-13015261 Msa0057110:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1_2:-13017617 Msa0057110:intron
GTACAATATGCAGGGTACTA+TGG 0.400982 1_2:-13015187 Msa0057110:CDS
AATTATATAATATACCTTGT+TGG 0.426634 1_2:+13016749 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1_2:+13015404 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1_2:-13016859 Msa0057110:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1_2:-13015252 Msa0057110:CDS
GACCAACTTCTAGATTGATA+TGG 0.439869 1_2:+13015610 None:intergenic
GTAAGATTTGAAGAAGAAGA+AGG 0.440782 1_2:+13015654 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1_2:-13015441 Msa0057110:CDS
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1_2:-13017801 Msa0057110:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1_2:-13015209 Msa0057110:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1_2:+13015425 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1_2:+13015443 None:intergenic
TTCTTATACTGGATTTGGAA+TGG 0.468387 1_2:+13016772 None:intergenic
TGGCAATAGGTACAATATGC+AGG 0.471195 1_2:-13015196 Msa0057110:CDS
GGGCTTAATTTGAATCTTGG+AGG 0.471334 1_2:-13015396 Msa0057110:CDS
AGAGTATTCCGCAAGAGTGC+AGG 0.472263 1_2:-13015690 Msa0057110:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1_2:-13017789 Msa0057110:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1_2:-13015722 Msa0057110:intron
TACCATATCAATCTAGAAGT+TGG 0.481646 1_2:-13015612 Msa0057110:CDS
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1_2:+13015339 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1_2:-13017805 Msa0057110:CDS
TATAGTTCCTTCCATAGAGC+TGG 0.487958 1_2:+13015514 None:intergenic
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1_2:-13016815 Msa0057110:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1_2:+13017733 None:intergenic
CCTAAATGCTGCATCATTGT+TGG 0.501547 1_2:+13015558 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1_2:-13015721 Msa0057110:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1_2:-13017021 Msa0057110:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1_2:-13017628 Msa0057110:CDS
ACTTCTAGATTGATATGGTA+AGG 0.513737 1_2:+13015615 None:intergenic
TGTACCTATTGCCATGAGTA+GGG 0.521891 1_2:+13015205 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1_2:-13015260 Msa0057110:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1_2:-13017007 Msa0057110:CDS
GGAAGGAACACGTGAGAAAG+AGG 0.523705 1_2:-13017768 Msa0057110:CDS
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1_2:-13015249 Msa0057110:CDS
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1_2:+13017741 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1_2:+13015204 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1_2:+13015459 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1_2:-13016939 Msa0057110:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1_2:+13017742 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1_2:-13015309 Msa0057110:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.549436 1_2:+13015564 None:intergenic
GAGAAGGATTCACCATTTCA+GGG 0.553123 1_2:-13015416 Msa0057110:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1_2:+13015682 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1_2:-13015432 Msa0057110:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1_2:+13015561 None:intergenic
TAAGATTTGAAGAAGAAGAA+GGG 0.568739 1_2:+13015655 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1_2:+13015272 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1_2:+13015302 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1_2:+13015345 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1_2:+13017734 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1_2:-13017020 Msa0057110:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1_2:-13017785 Msa0057110:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1_2:+13015132 None:intergenic
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1_2:-13017627 Msa0057110:CDS
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1_2:+13016905 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1_2:-13016921 Msa0057110:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1_2:-13017752 Msa0057110:CDS
CTCATTTCCAGCTCTATGGA+AGG 0.590822 1_2:-13015521 Msa0057110:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1_2:-13015438 Msa0057110:CDS
AAACAAGCCTTGTGATGGCA+TGG 0.592823 1_2:-13018924 None:intergenic
TATTATTCTCTGCAGCAACA+AGG 0.597751 1_2:+13015271 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1_2:-13015216 Msa0057110:CDS
GGCATATTATTATTAAAGCT+AGG 0.598474 1_2:+13015585 None:intergenic
AGTGTTACATCAGAATTGGT+TGG 0.599286 1_2:-13016876 Msa0057110:CDS
GGAAGGAACTATATCAACAC+TGG 0.599703 1_2:-13015504 Msa0057110:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1_2:+13015426 None:intergenic
GTGATGAGTTCTTCATCGGT+AGG 0.602022 1_2:+13017716 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1_2:-13016831 Msa0057110:CDS
GTAAGTGATGAGTTCTTCAT+CGG 0.604469 1_2:+13017712 None:intergenic
CAAAATAGTTTGTGAAGACG+TGG 0.607429 1_2:+13015371 None:intergenic
ATATTCATGCATGACCCAGT+TGG 0.607778 1_2:+13016800 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1_2:-13015195 Msa0057110:CDS
GGGTACTATGGACCATTGTG+TGG 0.616034 1_2:-13015175 Msa0057110:CDS
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1_2:+13015135 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1_2:-13016920 Msa0057110:CDS
ATATTATTATTAAAGCTAGG+AGG 0.657871 1_2:+13015588 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1_2:-13015718 Msa0057110:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1_2:-13016763 Msa0057110:intron
GAAAACCACAGGGAAAGACA+AGG 0.680177 1_2:-13016910 Msa0057110:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1_2:-13016814 Msa0057110:CDS
AATGATCAAGATCCACACAA+TGG 0.714365 1_2:+13015163 None:intergenic
GGATGAAATCGAAATCCGGG+AGG 0.762260 1_2:+13017737 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAACAAAAAACTA+GGG - chr1_2:13016624-13016643 Msa0057110:intron 10.0%
!! AGAAAAATTAAAATTAGTTA+TGG - chr1_2:13016720-13016739 Msa0057110:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG - chr1_2:13016918-13016937 Msa0057110:CDS 10.0%
!! ATGAAAAAAATTATGATAAT+AGG - chr1_2:13017376-13017395 Msa0057110:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG - chr1_2:13017377-13017396 Msa0057110:intron 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG - chr1_2:13017781-13017800 Msa0057110:CDS 10.0%
!!! ACAAAAATTTAAACTTTTTA+TGG - chr1_2:13018004-13018023 Msa0057110:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG - chr1_2:13018005-13018024 Msa0057110:intron 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG - chr1_2:13018006-13018025 Msa0057110:intron 10.0%
!! TAATACTATATTTAAGAATA+AGG - chr1_2:13018031-13018050 Msa0057110:intron 10.0%
!! AATACTATATTTAAGAATAA+GGG - chr1_2:13018032-13018051 Msa0057110:intron 10.0%
!! TTAAATATAAATTCTATGCA+TGG - chr1_2:13015893-13015912 Msa0057110:intron 15.0%
!! GGTTAAGAAAATTAAATATA+GGG + chr1_2:13016130-13016149 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG + chr1_2:13016151-13016170 None:intergenic 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG + chr1_2:13016152-13016171 None:intergenic 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG + chr1_2:13016523-13016542 None:intergenic 15.0%
!!! ATATTTAGTATCGATATATA+TGG + chr1_2:13016557-13016576 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG + chr1_2:13016621-13016640 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG - chr1_2:13016623-13016642 Msa0057110:intron 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG + chr1_2:13016866-13016885 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG - chr1_2:13016873-13016892 Msa0057110:CDS 15.0%
!! AATTATATAATATACCTTGT+TGG + chr1_2:13017307-13017326 None:intergenic 15.0%
!! ACATTTAAAGATGTATAATA+GGG + chr1_2:13017409-13017428 None:intergenic 15.0%
!! AACATTTAAAGATGTATAAT+AGG + chr1_2:13017410-13017429 None:intergenic 15.0%
!!! TTGAAGAAATTTTGTATATA+GGG + chr1_2:13017599-13017618 None:intergenic 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG + chr1_2:13017661-13017680 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG + chr1_2:13017662-13017681 None:intergenic 15.0%
!!! ATTTTAGTTTCTAAAACTTT+TGG - chr1_2:13017818-13017837 Msa0057110:intron 15.0%
!!! AAAGTTGAAGAATTTTTTTT+AGG - chr1_2:13017976-13017995 Msa0057110:intron 15.0%
!! ATACTATATTTAAGAATAAG+GGG - chr1_2:13018033-13018052 Msa0057110:intron 15.0%
!! GGGTTAAGAAAATTAAATAT+AGG + chr1_2:13016131-13016150 None:intergenic 20.0%
!!! TTCATACATAAAATTTTACC+TGG + chr1_2:13016457-13016476 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG + chr1_2:13016524-13016543 None:intergenic 20.0%
!! TTATGTAAAATTTATAGGGA+AGG - chr1_2:13017023-13017042 Msa0057110:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG - chr1_2:13017207-13017226 Msa0057110:intron 20.0%
!! TTATTCAGACTATTATAAGA+TGG + chr1_2:13017565-13017584 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG + chr1_2:13017600-13017619 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG + chr1_2:13017631-13017650 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG - chr1_2:13017864-13017883 Msa0057110:intron 20.0%
!! AATTCATTTCTTAAACTTGT+GGG - chr1_2:13017865-13017884 Msa0057110:intron 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG + chr1_2:13018091-13018110 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG + chr1_2:13018132-13018151 None:intergenic 20.0%
!! ATATTATTATTAAAGCTAGG+AGG + chr1_2:13018468-13018487 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG - chr1_2:13018793-13018812 Msa0057110:intron 20.0%
!! AATAATAATAACTTAGGGTT+TGG - chr1_2:13018798-13018817 Msa0057110:intron 20.0%
! ATTAATTGTTCACAACATGT+TGG - chr1_2:13015630-13015649 Msa0057110:CDS 25.0%
!! TAAAGCATGTTGGTTAATAT+GGG - chr1_2:13015681-13015700 Msa0057110:CDS 25.0%
!! AATTTTACATGCAAAGCAAT+AGG - chr1_2:13016394-13016413 Msa0057110:intron 25.0%
!! TTTTATAAAGCATGGATGAA+AGG + chr1_2:13016613-13016632 None:intergenic 25.0%
! AAGATGAAAGTCATATATTG+TGG + chr1_2:13016783-13016802 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG + chr1_2:13017650-13017669 None:intergenic 25.0%
! TAGAGTATATTTGCAAAGTT+TGG + chr1_2:13017706-13017725 None:intergenic 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG - chr1_2:13017792-13017811 Msa0057110:CDS 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG - chr1_2:13017793-13017812 Msa0057110:CDS 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG + chr1_2:13018127-13018146 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG - chr1_2:13018190-13018209 Msa0057110:intron 25.0%
! TAAGATTTGAAGAAGAAGAA+GGG + chr1_2:13018401-13018420 None:intergenic 25.0%
! GGCATATTATTATTAAAGCT+AGG + chr1_2:13018471-13018490 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG - chr1_2:13018792-13018811 Msa0057110:intron 25.0%
ATGTATCACTATCTCTCAAA+TGG + chr1_2:13015159-13015178 None:intergenic 30.0%
ACAATTAATGACATAACTGC+CGG + chr1_2:13015619-13015638 None:intergenic 30.0%
! TTTTTGTGACTAAAGCATGT+TGG - chr1_2:13015671-13015690 Msa0057110:CDS 30.0%
! CTAAAGCATGTTGGTTAATA+TGG - chr1_2:13015680-13015699 Msa0057110:CDS 30.0%
AATAAACAACTCAATTCGCT+AGG - chr1_2:13015761-13015780 Msa0057110:intron 30.0%
CAAAGTCATTGAAGAAAACA+AGG + chr1_2:13015870-13015889 None:intergenic 30.0%
!! GCAATTGAGTTGAAGTATAA+AGG + chr1_2:13015945-13015964 None:intergenic 30.0%
TCTAGTGTTTCTTGCAAATA+AGG - chr1_2:13015978-13015997 Msa0057110:intron 30.0%
!! TTTTTGTGTGTTATTCCAGA+AGG - chr1_2:13016222-13016241 Msa0057110:intron 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG - chr1_2:13016248-13016267 Msa0057110:intron 30.0%
CTTTCATCTTTCTTGTGATA+TGG - chr1_2:13016793-13016812 Msa0057110:CDS 30.0%
TCTTTCTTGTGATATGGTTA+AGG - chr1_2:13016799-13016818 Msa0057110:CDS 30.0%
TTCTTATACTGGATTTGGAA+TGG + chr1_2:13017284-13017303 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG + chr1_2:13017438-13017457 None:intergenic 30.0%
GTAAGATTTGAAGAAGAAGA+AGG + chr1_2:13018402-13018421 None:intergenic 30.0%
ACTTCTAGATTGATATGGTA+AGG + chr1_2:13018441-13018460 None:intergenic 30.0%
TACCATATCAATCTAGAAGT+TGG - chr1_2:13018441-13018460 Msa0057110:intron 30.0%
AAATGGGAATATTGATGCAT+TGG + chr1_2:13018597-13018616 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG + chr1_2:13018613-13018632 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG + chr1_2:13018652-13018671 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG - chr1_2:13018801-13018820 Msa0057110:intron 30.0%
AATTAATGACATAACTGCCG+GGG + chr1_2:13015617-13015636 None:intergenic 35.0%
CAATTAATGACATAACTGCC+GGG + chr1_2:13015618-13015637 None:intergenic 35.0%
AATTCGCTAGGTATCTTTCT+TGG - chr1_2:13015773-13015792 Msa0057110:intron 35.0%
! GTGAAGTTTTCACCAAATGT+GGG + chr1_2:13015835-13015854 None:intergenic 35.0%
! TGTGAAGTTTTCACCAAATG+TGG + chr1_2:13015836-13015855 None:intergenic 35.0%
!! GGAGAGACAAACTTTTTCTT+TGG + chr1_2:13016032-13016051 None:intergenic 35.0%
TAACAACTTCTTTGTCCTTC+TGG + chr1_2:13016240-13016259 None:intergenic 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG - chr1_2:13016252-13016271 Msa0057110:intron 35.0%
TAGCAAAGAAAGGAAGGATT+TGG - chr1_2:13016258-13016277 Msa0057110:intron 35.0%
AGAAAGGAAGGATTTGGAAA+TGG - chr1_2:13016264-13016283 Msa0057110:intron 35.0%
GTAAGTGATGAGTTCTTCAT+CGG + chr1_2:13016344-13016363 None:intergenic 35.0%
AGAGATCGTAAATATCCAAC+AGG - chr1_2:13017084-13017103 Msa0057110:intron 35.0%
ACTAATAGAGCAACAAACAC+TGG - chr1_2:13017114-13017133 Msa0057110:intron 35.0%
CAACAGTGTTACATCAGAAT+TGG - chr1_2:13017173-13017192 Msa0057110:intron 35.0%
AGTGTTACATCAGAATTGGT+TGG - chr1_2:13017177-13017196 Msa0057110:intron 35.0%
! GGTTGGTATGAAGAAAACTT+TGG - chr1_2:13017194-13017213 Msa0057110:intron 35.0%
! GTTGGTTCTTATACTGGATT+TGG + chr1_2:13017289-13017308 None:intergenic 35.0%
ATCCAGTATAAGAACCAACA+AGG - chr1_2:13017290-13017309 Msa0057110:intron 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG + chr1_2:13017295-13017314 None:intergenic 35.0%
CTAGCATTCACTCTTCTATT+TGG - chr1_2:13017484-13017503 Msa0057110:intron 35.0%
TAAATAGACCTCACACAAAG+TGG + chr1_2:13017531-13017550 None:intergenic 35.0%
ATGTCGAATATATATGCAGC+AGG - chr1_2:13018323-13018342 Msa0057110:intron 35.0%
TATATATGCAGCAGGATGAA+TGG - chr1_2:13018331-13018350 Msa0057110:intron 35.0%
ATATATGCAGCAGGATGAAT+GGG - chr1_2:13018332-13018351 Msa0057110:intron 35.0%
GACCAACTTCTAGATTGATA+TGG + chr1_2:13018446-13018465 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG - chr1_2:13018496-13018515 Msa0057110:intron 35.0%
! CTAAGGGTGATGATGATAAA+TGG + chr1_2:13018614-13018633 None:intergenic 35.0%
CATTTATCATCATCACCCTT+AGG - chr1_2:13018612-13018631 Msa0057110:intron 35.0%
! TCAGGGCTTAATTTGAATCT+TGG - chr1_2:13018654-13018673 Msa0057110:intron 35.0%
! CAAAATAGTTTGTGAAGACG+TGG + chr1_2:13018685-13018704 None:intergenic 35.0%
! CGTCTTCACAAACTATTTTG+AGG - chr1_2:13018685-13018704 Msa0057110:intron 35.0%
ATTATTCTCTGCAGCAACAA+GGG + chr1_2:13018784-13018803 None:intergenic 35.0%
TATTATTCTCTGCAGCAACA+AGG + chr1_2:13018785-13018804 None:intergenic 35.0%
AATAATGCAAACCCTACTCA+TGG - chr1_2:13018837-13018856 Msa0057110:intron 35.0%
AATGATCAAGATCCACACAA+TGG + chr1_2:13018893-13018912 None:intergenic 35.0%
TGAAGGTAAAGACCCACATT+TGG - chr1_2:13015820-13015839 Msa0057110:intron 40.0%
GCAAGAAACACTAGACTTGA+GGG + chr1_2:13015973-13015992 None:intergenic 40.0%
TGCAAGAAACACTAGACTTG+AGG + chr1_2:13015974-13015993 None:intergenic 40.0%
AGGAAGGATTTGGAAATGGA+AGG - chr1_2:13016268-13016287 Msa0057110:intron 40.0%
GTAGGATGAAATCGAAATCC+GGG + chr1_2:13016322-13016341 None:intergenic 40.0%
GGTAGGATGAAATCGAAATC+CGG + chr1_2:13016323-13016342 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG - chr1_2:13017032-13017051 Msa0057110:intron 40.0%
TTTATAGGGAAGGCCAAGAT+GGG - chr1_2:13017033-13017052 Msa0057110:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG + chr1_2:13017049-13017068 None:intergenic 40.0%
CCAAGATGGGTACAAAAGAA+TGG - chr1_2:13017046-13017065 Msa0057110:intron 40.0%
! CTATTAGTTCTCACACCTGT+TGG + chr1_2:13017102-13017121 None:intergenic 40.0%
GAGCAACAAACACTGGATAT+TGG - chr1_2:13017121-13017140 Msa0057110:intron 40.0%
ACTGGATATTGGAAAACCAC+AGG - chr1_2:13017132-13017151 Msa0057110:intron 40.0%
CTGGATATTGGAAAACCACA+GGG - chr1_2:13017133-13017152 Msa0057110:intron 40.0%
TAGAGGAGAGAAAACCAACT+GGG - chr1_2:13017239-13017258 Msa0057110:intron 40.0%
ATATTCATGCATGACCCAGT+TGG + chr1_2:13017256-13017275 None:intergenic 40.0%
AGTCACAACCGTCATAGTAT+TGG - chr1_2:13018080-13018099 Msa0057110:intron 40.0%
CATGTATGTGTGTGTGTTTC+TGG + chr1_2:13018273-13018292 None:intergenic 40.0%
AAATGCTGCATCATTGTTGG+TGG + chr1_2:13018495-13018514 None:intergenic 40.0%
CCTAAATGCTGCATCATTGT+TGG + chr1_2:13018498-13018517 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG - chr1_2:13018495-13018514 Msa0057110:intron 40.0%
TATAGTTCCTTCCATAGAGC+TGG + chr1_2:13018542-13018561 None:intergenic 40.0%
GGAAGGAACTATATCAACAC+TGG - chr1_2:13018549-13018568 Msa0057110:intron 40.0%
!!! ACTGGAGAAGTTTTAAGAGC+TGG - chr1_2:13018567-13018586 Msa0057110:intron 40.0%
TTATCATCATCACCCTTAGG+AGG - chr1_2:13018615-13018634 Msa0057110:intron 40.0%
GAGAAGGATTCACCATTTCA+GGG - chr1_2:13018637-13018656 Msa0057110:intron 40.0%
! GGGCTTAATTTGAATCTTGG+AGG - chr1_2:13018657-13018676 Msa0057110:intron 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG + chr1_2:13018711-13018730 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG - chr1_2:13018713-13018732 Msa0057110:intron 40.0%
GCCATAGTATGAGTAGTTGA+TGG + chr1_2:13018717-13018736 None:intergenic 40.0%
ATTTGCACCTGTCATCATGT+TGG + chr1_2:13018754-13018773 None:intergenic 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG - chr1_2:13018804-13018823 Msa0057110:intron 40.0%
TGTACCTATTGCCATGAGTA+GGG + chr1_2:13018851-13018870 None:intergenic 40.0%
TTGTACCTATTGCCATGAGT+AGG + chr1_2:13018852-13018871 None:intergenic 40.0%
TGGCAATAGGTACAATATGC+AGG - chr1_2:13018857-13018876 Msa0057110:intron 40.0%
GGCAATAGGTACAATATGCA+GGG - chr1_2:13018858-13018877 Msa0057110:intron 40.0%
! GTACAATATGCAGGGTACTA+TGG - chr1_2:13018866-13018885 Msa0057110:intron 40.0%
GTGTGGATCTTGATCATTAC+TGG - chr1_2:13018895-13018914 Msa0057110:intron 40.0%
GGGGAAAAGCTCATGGTTAA+GGG + chr1_2:13015598-13015617 None:intergenic 45.0%
! CTTAACCATGAGCTTTTCCC+CGG - chr1_2:13015597-13015616 Msa0057110:CDS 45.0%
AGCTGTACGACTCAACTTGA+AGG - chr1_2:13015803-13015822 Msa0057110:intron 45.0%
GATGACTTCGCTTACTTGCA+TGG + chr1_2:13016053-13016072 None:intergenic 45.0%
AAATCGAAATCCGGGAGGTA+GGG + chr1_2:13016314-13016333 None:intergenic 45.0%
GTGATGAGTTCTTCATCGGT+AGG + chr1_2:13016340-13016359 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG - chr1_2:13016425-13016444 Msa0057110:intron 45.0%
TCTCAACAAATGCGAGCCAT+GGG - chr1_2:13016426-13016445 Msa0057110:intron 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG + chr1_2:13016445-13016464 None:intergenic 45.0%
GAAAACCACAGGGAAAGACA+AGG - chr1_2:13017143-13017162 Msa0057110:intron 45.0%
AATCTCCTTGTCTTTCCCTG+TGG + chr1_2:13017151-13017170 None:intergenic 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG + chr1_2:13017240-13017259 None:intergenic 45.0%
CTAGAGGAGAGAAAACCAAC+TGG - chr1_2:13017238-13017257 Msa0057110:intron 45.0%
TAGACCTCACACAAAGTGGT+GGG + chr1_2:13017527-13017546 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG + chr1_2:13017528-13017547 None:intergenic 45.0%
GCTACTCATTTCCAGCTCTA+TGG - chr1_2:13018528-13018547 Msa0057110:intron 45.0%
CTCATTTCCAGCTCTATGGA+AGG - chr1_2:13018532-13018551 Msa0057110:intron 45.0%
GTGAATCCTTCTCCTCCTAA+GGG + chr1_2:13018630-13018649 None:intergenic 45.0%
GGAGAAGGATTCACCATTTC+AGG - chr1_2:13018636-13018655 Msa0057110:intron 45.0%
TTCAGCTCCAACATGATGAC+AGG - chr1_2:13018744-13018763 Msa0057110:intron 45.0%
CAAACCCTACTCATGGCAAT+AGG - chr1_2:13018844-13018863 Msa0057110:intron 45.0%
!!! TATTTATAAAATATTTGTTA+CGG - chr1_2:13015199-13015218 Msa0057110:CDS 5.0%
!! TTTATATTGATATTTATTTA+AGG - chr1_2:13015523-13015542 Msa0057110:CDS 5.0%
!! TTTAATTATGTAAAATTTAT+AGG - chr1_2:13017018-13017037 Msa0057110:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG - chr1_2:13017019-13017038 Msa0057110:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG + chr1_2:13017919-13017938 None:intergenic 5.0%
CGGGGAAAAGCTCATGGTTA+AGG + chr1_2:13015599-13015618 None:intergenic 50.0%
GGAAGGAACACGTGAGAAAG+AGG - chr1_2:13016285-13016304 Msa0057110:intron 50.0%
AAAGAGGAAACCCTACCTCC+CGG - chr1_2:13016301-13016320 Msa0057110:intron 50.0%
GAAATCGAAATCCGGGAGGT+AGG + chr1_2:13016315-13016334 None:intergenic 50.0%
GGATGAAATCGAAATCCGGG+AGG + chr1_2:13016319-13016338 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG - chr1_2:13017222-13017241 Msa0057110:intron 50.0%
ATGTCCCACCACTTTGTGTG+AGG - chr1_2:13017520-13017539 Msa0057110:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG - chr1_2:13018335-13018354 Msa0057110:intron 50.0%
! AGAGTATTCCGCAAGAGTGC+AGG - chr1_2:13018363-13018382 Msa0057110:intron 50.0%
TCTTTGCACCTGCACTCTTG+CGG + chr1_2:13018374-13018393 None:intergenic 50.0%
! TGCTGCATCATTGTTGGTGG+TGG + chr1_2:13018492-13018511 None:intergenic 50.0%
TCATCACCCTTAGGAGGAGA+AGG - chr1_2:13018621-13018640 Msa0057110:intron 50.0%
GGTGAATCCTTCTCCTCCTA+AGG + chr1_2:13018631-13018650 None:intergenic 50.0%
GGGTACTATGGACCATTGTG+TGG - chr1_2:13018878-13018897 Msa0057110:intron 50.0%
AACTGCCGGGGAAAAGCTCA+TGG + chr1_2:13015605-13015624 None:intergenic 55.0%
TGCGAGCCATGGGAGCTTCC+AGG - chr1_2:13016436-13016455 Msa0057110:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 13015143 13018932 13015143 ID=Msa0057110;Name=Msa0057110
chr1_2 mRNA 13015143 13018932 13015143 ID=Msa0057110-mRNA-1;Parent=Msa0057110;Name=Msa0057110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.2|0|0.66|0.4|0.33|6|0|359
chr1_2 exon 13018925 13018932 13018925 ID=Msa0057110-mRNA-1:exon:5091;Parent=Msa0057110-mRNA-1
chr1_2 exon 13018383 13018389 13018383 ID=Msa0057110-mRNA-1:exon:5090;Parent=Msa0057110-mRNA-1
chr1_2 exon 13017618 13017834 13017618 ID=Msa0057110-mRNA-1:exon:5089;Parent=Msa0057110-mRNA-1
chr1_2 exon 13016985 13017035 13016985 ID=Msa0057110-mRNA-1:exon:5088;Parent=Msa0057110-mRNA-1
chr1_2 exon 13016764 13016969 13016764 ID=Msa0057110-mRNA-1:exon:5087;Parent=Msa0057110-mRNA-1
chr1_2 exon 13015143 13015733 13015143 ID=Msa0057110-mRNA-1:exon:5086;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13018925 13018932 13018925 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13018383 13018389 13018383 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13017618 13017834 13017618 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13016985 13017035 13016985 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13016764 13016969 13016764 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
chr1_2 CDS 13015143 13015733 13015143 ID=Msa0057110-mRNA-1:cds;Parent=Msa0057110-mRNA-1
Gene Sequence

>Msa0057110

ATGGCATGCATGTTGAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACACGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTAAGCAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTATTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCTTCTTCAAATCTTACAAGAGCAGTCATGAATCCTTACCATATCAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATGCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCTACTCATTTCCAGCTCTATGGAAGGAACTATATCAACACTGGAGAAGTTTTAAGAGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGATCCACGTCTTCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>Msa0057110

MACMLKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVSKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVMNPYHINLEVGPPSFNNNMPPPTMMQHLGLDSATHFQLYGRNYINTGEVLRAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMDHCVDLDHYWPPSY*