Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009810 | sp|Q9FGM1|PYL8_ARATH | 75.676 | 185 | 43 | 1 | 34 | 216 | 1 | 185 | 1.63e-102 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009810 | Msa0009880 | 0.966679 | 3.032268e-126 | -8.615850e-47 |
| Msa0009810 | Msa0059580 | 0.829846 | 4.095856e-55 | -8.615850e-47 |
| Msa0009810 | Msa0104430 | 0.842991 | 1.843872e-58 | -8.615850e-47 |
| Msa0009810 | Msa0141990 | 0.964263 | 4.161990e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009810 | MtrunA17_Chr1g0158871 | 95.789 | 190 | 4 | 1 | 36 | 221 | 1 | 190 | 4.00e-134 | 374 |
| Msa0009810 | MtrunA17_Chr3g0126471 | 86.842 | 190 | 22 | 1 | 35 | 221 | 3 | 192 | 1.30e-122 | 345 |
| Msa0009810 | MtrunA17_Chr8g0347191 | 73.743 | 179 | 47 | 0 | 41 | 219 | 64 | 242 | 3.90e-101 | 293 |
| Msa0009810 | MtrunA17_Chr3g0114121 | 52.727 | 165 | 73 | 4 | 45 | 207 | 61 | 222 | 4.43e-58 | 183 |
| Msa0009810 | MtrunA17_Chr7g0243271 | 56.213 | 169 | 68 | 3 | 48 | 210 | 11 | 179 | 6.88e-56 | 176 |
| Msa0009810 | MtrunA17_Chr5g0437611 | 52.147 | 163 | 72 | 3 | 48 | 207 | 44 | 203 | 2.02e-55 | 175 |
| Msa0009810 | MtrunA17_Chr4g0005501 | 49.689 | 161 | 80 | 1 | 50 | 209 | 49 | 209 | 1.10e-53 | 171 |
| Msa0009810 | MtrunA17_Chr1g0151661 | 49.686 | 159 | 77 | 2 | 50 | 206 | 39 | 196 | 5.25e-52 | 167 |
| Msa0009810 | MtrunA17_Chr5g0411391 | 49.398 | 166 | 77 | 3 | 49 | 208 | 43 | 207 | 5.56e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009810 | AT5G53160.2 | 75.676 | 185 | 43 | 1 | 34 | 216 | 1 | 185 | 1.65e-103 | 297 |
| Msa0009810 | AT1G01360.1 | 71.823 | 181 | 50 | 1 | 37 | 216 | 7 | 187 | 1.23e-95 | 277 |
| Msa0009810 | AT4G27920.1 | 69.364 | 173 | 51 | 2 | 36 | 207 | 1 | 172 | 3.24e-89 | 261 |
| Msa0009810 | AT4G01026.1 | 65.079 | 189 | 66 | 0 | 30 | 218 | 3 | 191 | 5.74e-87 | 256 |
| Msa0009810 | AT5G53160.1 | 72.650 | 117 | 30 | 1 | 34 | 148 | 1 | 117 | 3.83e-58 | 181 |
| Msa0009810 | AT2G38310.1 | 53.939 | 165 | 71 | 2 | 52 | 214 | 41 | 202 | 4.49e-54 | 172 |
| Msa0009810 | AT5G05440.1 | 51.899 | 158 | 71 | 3 | 48 | 203 | 43 | 197 | 3.72e-53 | 170 |
| Msa0009810 | AT2G40330.1 | 48.503 | 167 | 82 | 2 | 48 | 210 | 46 | 212 | 3.78e-53 | 170 |
| Msa0009810 | AT2G26040.1 | 47.619 | 168 | 83 | 3 | 50 | 213 | 22 | 188 | 3.12e-51 | 164 |
| Msa0009810 | AT4G17870.1 | 49.693 | 163 | 80 | 1 | 50 | 210 | 17 | 179 | 1.08e-48 | 158 |
| Msa0009810 | AT1G73000.1 | 41.573 | 178 | 92 | 3 | 42 | 208 | 30 | 206 | 8.64e-44 | 146 |
| Msa0009810 | AT5G45870.1 | 51.370 | 146 | 68 | 2 | 63 | 207 | 10 | 153 | 3.17e-39 | 133 |
| Msa0009810 | AT5G45860.1 | 49.091 | 165 | 75 | 3 | 47 | 210 | 1 | 157 | 3.71e-39 | 133 |
| Msa0009810 | AT5G46790.2 | 47.273 | 165 | 82 | 2 | 50 | 209 | 44 | 208 | 5.14e-39 | 134 |
| Msa0009810 | AT5G46790.1 | 47.273 | 165 | 82 | 2 | 50 | 209 | 44 | 208 | 5.14e-39 | 134 |
| Msa0009810 | AT4G18620.1 | 43.949 | 157 | 81 | 1 | 60 | 209 | 6 | 162 | 1.92e-34 | 120 |
Find 65 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCCATCAATAATTTC+AGG | 0.233126 | 1_1:+14657048 | None:intergenic |
| AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1_1:-14658718 | Msa0009810:CDS |
| GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1_1:-14657266 | Msa0009810:CDS |
| TGTTTGTTGCTTTCCTCATC+AGG | 0.320510 | 1_1:+14659180 | None:intergenic |
| AGGTATAGAAGAAGTATTAT+TGG | 0.335658 | 1_1:-14658759 | Msa0009810:CDS |
| AGAGAAGTTGATGTTAAATC+AGG | 0.349446 | 1_1:-14657344 | Msa0009810:CDS |
| CTCCACCCTGAAATTATTGA+TGG | 0.373274 | 1_1:-14657054 | Msa0009810:CDS |
| CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1_1:+14656987 | None:intergenic |
| AGTGTGCTTCTGCTCTTGTT+AGG | 0.382760 | 1_1:-14658647 | Msa0009810:CDS |
| AGGATAATCAATAGAGCAAA+TGG | 0.398173 | 1_1:+14656739 | None:intergenic |
| CTTTCTCTAGGTATGGTCCT+TGG | 0.413122 | 1_1:-14657450 | Msa0009810:intron |
| TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1_1:-14657391 | Msa0009810:CDS |
| TCGTCTTTGGTGTTCCCCTC+GGG | 0.441469 | 1_1:+14656988 | None:intergenic |
| GAAGTAGCAAGTCTCGTCTT+TGG | 0.441478 | 1_1:+14656975 | None:intergenic |
| ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1_1:+14657395 | None:intergenic |
| ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1_1:-14657274 | Msa0009810:CDS |
| GCAACAAACAAAGACACAAA+AGG | 0.460061 | 1_1:-14659167 | Msa0009810:CDS |
| TATTAGAGCACCGGTTCCTC+AGG | 0.466934 | 1_1:-14658622 | Msa0009810:intron |
| CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1_1:+14657317 | None:intergenic |
| GCCTTCCATCAATAATTTCA+GGG | 0.477985 | 1_1:+14657049 | None:intergenic |
| AGCACAAGGATAATTTGAAT+AGG | 0.478146 | 1_1:-14658779 | Msa0009810:CDS |
| TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1_1:-14657312 | Msa0009810:CDS |
| GAAATTATTGATGGAAGGCC+AGG | 0.481587 | 1_1:-14657045 | Msa0009810:CDS |
| AGCTCCTATACTCGATCGAT+TGG | 0.485005 | 1_1:+14656874 | None:intergenic |
| TTTGAGATTGCACTTGATAA+CGG | 0.486760 | 1_1:+14656945 | None:intergenic |
| AGGTATGGTCCTTGGTAAGA+AGG | 0.487057 | 1_1:-14657442 | Msa0009810:CDS |
| CCGTGGCAGCTATATGTCCT+TGG | 0.491660 | 1_1:+14656833 | None:intergenic |
| AGACATCACCGGCAGCAGCC+TGG | 0.504488 | 1_1:-14658678 | Msa0009810:CDS |
| AGAAGGGCAACCTGAGGAAC+CGG | 0.506005 | 1_1:+14658612 | None:intergenic |
| TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1_1:-14657246 | Msa0009810:intron |
| TGATGGAAGGCCAGGTACAC+TGG | 0.508216 | 1_1:-14657037 | Msa0009810:CDS |
| GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1_1:+14658670 | None:intergenic |
| CCTCTCGGAGGCTTAGGAGA+CGG | 0.531163 | 1_1:-14656791 | Msa0009810:three_prime_UTR |
| GATTCAATTACCAGTGTACC+TGG | 0.531597 | 1_1:+14657027 | None:intergenic |
| TGAACCAATCGATCGAGTAT+AGG | 0.533084 | 1_1:-14656878 | Msa0009810:exon |
| AGCTATTCCTTCTGAGACAT+CGG | 0.534406 | 1_1:+14656915 | None:intergenic |
| AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1_1:-14658712 | Msa0009810:CDS |
| CTCTTAGACTTCCGATCTCG+AGG | 0.539438 | 1_1:+14657363 | None:intergenic |
| TATAGGAGCTTATAATAAGA+AGG | 0.540592 | 1_1:-14656861 | Msa0009810:exon |
| GAACATGCTCATTGTCATCA+AGG | 0.542897 | 1_1:+14657285 | None:intergenic |
| ACCCTGAAATTATTGATGGA+AGG | 0.546775 | 1_1:-14657050 | Msa0009810:CDS |
| TATAGAAGAAGTATTATTGG+AGG | 0.548048 | 1_1:-14658756 | Msa0009810:CDS |
| CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1_1:-14657263 | Msa0009810:CDS |
| TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1_1:-14657390 | Msa0009810:CDS |
| TGTTAGGCATATTAGAGCAC+CGG | 0.563370 | 1_1:-14658631 | Msa0009810:CDS |
| CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1_1:-14657085 | Msa0009810:intron |
| ATAATAAGAAGGTTCTTCCA+AGG | 0.568200 | 1_1:-14656850 | Msa0009810:three_prime_UTR |
| GAGAAGTTGATGTTAAATCA+GGG | 0.568344 | 1_1:-14657343 | Msa0009810:CDS |
| GTAAGGGGAAACCTCGAGAT+CGG | 0.576734 | 1_1:-14657374 | Msa0009810:CDS |
| CCAAGGACATATAGCTGCCA+CGG | 0.577818 | 1_1:-14656833 | Msa0009810:three_prime_UTR |
| GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1_1:-14657389 | Msa0009810:CDS |
| TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1_1:-14656922 | Msa0009810:CDS |
| GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1_1:+14658660 | None:intergenic |
| AAATCAGCTAATGCCTGATG+AGG | 0.601831 | 1_1:-14659193 | None:intergenic |
| CGGAGGCTTAGGAGACGGAC+TGG | 0.622375 | 1_1:-14656786 | Msa0009810:three_prime_UTR |
| GAAATCAGTATATATAACAA+AGG | 0.630476 | 1_1:+14656719 | None:intergenic |
| AACCGCTGAAGCTTCATCCG+TGG | 0.646785 | 1_1:+14656816 | None:intergenic |
| TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1_1:-14657003 | Msa0009810:CDS |
| TGCCACGGATGAAGCTTCAG+CGG | 0.648630 | 1_1:-14656818 | Msa0009810:three_prime_UTR |
| AATATATTAGAAGACATCAC+CGG | 0.658365 | 1_1:-14658689 | Msa0009810:CDS |
| CTGATCGAACCTTCTTACCA+AGG | 0.687829 | 1_1:+14657433 | None:intergenic |
| TTCCATCAATAATTTCAGGG+TGG | 0.700428 | 1_1:+14657052 | None:intergenic |
| CCGTCTCCTAAGCCTCCGAG+AGG | 0.714806 | 1_1:+14656791 | None:intergenic |
| CTCGATCGATTGGTTCAGTG+CGG | 0.717158 | 1_1:+14656884 | None:intergenic |
| TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1_1:-14657002 | Msa0009810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTGTTTGTATGTT+TGG | + | chr1_1:14656828-14656847 | None:intergenic | 15.0% |
| !!! | ATTAATTCGTTTACTTTTTT+AGG | - | chr1_1:14656956-14656975 | Msa0009810:CDS | 15.0% |
| !! | ATAAATAACAAAAGAAAGAA+GGG | + | chr1_1:14657314-14657333 | None:intergenic | 15.0% |
| !! | TATAAATAACAAAAGAAAGA+AGG | + | chr1_1:14657315-14657334 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAACACTATTTA+AGG | + | chr1_1:14657494-14657513 | None:intergenic | 15.0% |
| !! | AAAAGAACAAAATATAGTTA+TGG | - | chr1_1:14657515-14657534 | Msa0009810:intron | 15.0% |
| !!! | TTTTTAAAGAAGAATCAATT+CGG | + | chr1_1:14658769-14658788 | None:intergenic | 15.0% |
| !! | TAATAATAGCACTATATAAG+TGG | - | chr1_1:14656783-14656802 | Msa0009810:three_prime_UTR | 20.0% |
| !!! | TTTGGTTTTAATTCAAAATG+GGG | + | chr1_1:14656810-14656829 | None:intergenic | 20.0% |
| !!! | GTTTGGTTTTAATTCAAAAT+GGG | + | chr1_1:14656811-14656830 | None:intergenic | 20.0% |
| !!! | TGTTTGGTTTTAATTCAAAA+TGG | + | chr1_1:14656812-14656831 | None:intergenic | 20.0% |
| !!! | GATAATAACAAATTTTGCTT+AGG | - | chr1_1:14656978-14656997 | Msa0009810:CDS | 20.0% |
| !! | TGGTTATGTAAATGTTAAAA+CGG | - | chr1_1:14657535-14657554 | Msa0009810:intron | 20.0% |
| !! | GTAATTTAAGAAAACAAAAG+TGG | - | chr1_1:14657624-14657643 | Msa0009810:intron | 20.0% |
| !!! | TTCAATTTGATTTGAATTGT+TGG | - | chr1_1:14657721-14657740 | Msa0009810:intron | 20.0% |
| !!! | TTGCTTTATTACTCTTTAAA+GGG | - | chr1_1:14658001-14658020 | Msa0009810:intron | 20.0% |
| !! | TTTAAATAGAAAATGAAGAG+CGG | + | chr1_1:14658090-14658109 | None:intergenic | 20.0% |
| !! | CATTATACAAAAATATTGTG+AGG | + | chr1_1:14658395-14658414 | None:intergenic | 20.0% |
| !!! | AGGTATAGAAGAAGTATTAT+TGG | - | chr1_1:14657148-14657167 | Msa0009810:intron | 25.0% |
| !!! | TATAGAAGAAGTATTATTGG+AGG | - | chr1_1:14657151-14657170 | Msa0009810:intron | 25.0% |
| ! | TAAAAATGAATGGAATTGGA+AGG | - | chr1_1:14657176-14657195 | Msa0009810:intron | 25.0% |
| ! | AATTGGAAGGTTTAGTAATA+TGG | - | chr1_1:14657189-14657208 | Msa0009810:intron | 25.0% |
| ! | AATATATTAGAAGACATCAC+CGG | - | chr1_1:14657218-14657237 | Msa0009810:intron | 25.0% |
| ! | TTGTGTTAGATATACAGTTA+TGG | - | chr1_1:14657434-14657453 | Msa0009810:CDS | 25.0% |
| !!! | GAATGTTTTGATGATGTTTT+TGG | - | chr1_1:14657760-14657779 | Msa0009810:intron | 25.0% |
| !!! | GATGTTTTTGGTCTATTTTA+TGG | - | chr1_1:14657772-14657791 | Msa0009810:intron | 25.0% |
| !! | ACTATTAATTTTCTCGACAA+CGG | + | chr1_1:14657972-14657991 | None:intergenic | 25.0% |
| ! | TTGTCGAGAAAATTAATAGT+TGG | - | chr1_1:14657972-14657991 | Msa0009810:intron | 25.0% |
| ! | TGTCGAGAAAATTAATAGTT+GGG | - | chr1_1:14657973-14657992 | Msa0009810:intron | 25.0% |
| !! | CTTGCTTTATTACTCTTTAA+AGG | - | chr1_1:14658000-14658019 | Msa0009810:intron | 25.0% |
| ! | TAATTGGTATGAAATTTACG+GGG | + | chr1_1:14658067-14658086 | None:intergenic | 25.0% |
| ! | GTAATTGGTATGAAATTTAC+GGG | + | chr1_1:14658068-14658087 | None:intergenic | 25.0% |
| ! | GGTAATTGGTATGAAATTTA+CGG | + | chr1_1:14658069-14658088 | None:intergenic | 25.0% |
| !!! | ACAATCTATTTTTGCATCTT+TGG | - | chr1_1:14658122-14658141 | Msa0009810:intron | 25.0% |
| ! | TGCTATTGAATAAAGAGTTT+CGG | - | chr1_1:14658362-14658381 | Msa0009810:intron | 25.0% |
| !! | ATAAGATTTTAAGCAAACAG+AGG | + | chr1_1:14658734-14658753 | None:intergenic | 25.0% |
| ! | TCCTTAAAATGATAACTCTT+TGG | - | chr1_1:14658797-14658816 | Msa0009810:intron | 25.0% |
| !! | ACCAAAGAGTTATCATTTTA+AGG | + | chr1_1:14658801-14658820 | None:intergenic | 25.0% |
| ! | TATAGGAGCTTATAATAAGA+AGG | - | chr1_1:14659046-14659065 | Msa0009810:intron | 25.0% |
| !! | CTATCATCACTTGTTATGTT+TGG | + | chr1_1:14656901-14656920 | None:intergenic | 30.0% |
| GAATATGCAAAGTATGTGAT+TGG | + | chr1_1:14657043-14657062 | None:intergenic | 30.0% | |
| CTTTGCATATTCTTCTTCTT+TGG | - | chr1_1:14657051-14657070 | Msa0009810:CDS | 30.0% | |
| AACAAAGAAAACAAAGTGTG+TGG | + | chr1_1:14657083-14657102 | None:intergenic | 30.0% | |
| !!! | TTATGATTTTTTGCAGCACA+AGG | - | chr1_1:14657114-14657133 | Msa0009810:intron | 30.0% |
| AGCACAAGGATAATTTGAAT+AGG | - | chr1_1:14657128-14657147 | Msa0009810:intron | 30.0% | |
| ! | ATTGGAGGTGTAAAAATGAA+TGG | - | chr1_1:14657166-14657185 | Msa0009810:intron | 30.0% |
| GGTGTAAAAATGAATGGAAT+TGG | - | chr1_1:14657172-14657191 | Msa0009810:intron | 30.0% | |
| AAGGTTTAGTAATATGGAGA+TGG | - | chr1_1:14657195-14657214 | Msa0009810:intron | 30.0% | |
| !! | TGTGTGAAGATTTTTGTTGT+TGG | - | chr1_1:14657392-14657411 | Msa0009810:CDS | 30.0% |
| AGATATACAGTTATGGTTGT+TGG | - | chr1_1:14657441-14657460 | Msa0009810:CDS | 30.0% | |
| !! | TAAAACGGTTAGCTGATTTT+TGG | - | chr1_1:14657550-14657569 | Msa0009810:intron | 30.0% |
| !!! | TGCTACTATCTTTTAGGTTT+TGG | - | chr1_1:14657828-14657847 | Msa0009810:intron | 30.0% |
| !!! | ATGCATTTTTAGCACATCAA+AGG | - | chr1_1:14658210-14658229 | Msa0009810:intron | 30.0% |
| GAAAAAATCGAACTGAATTG+AGG | + | chr1_1:14658328-14658347 | None:intergenic | 30.0% | |
| AAATAAACATCACACAACGA+GGG | + | chr1_1:14658421-14658440 | None:intergenic | 30.0% | |
| TAAATAAACATCACACAACG+AGG | + | chr1_1:14658422-14658441 | None:intergenic | 30.0% | |
| !! | ACAAATGGTTTGTACTTTTG+TGG | + | chr1_1:14658500-14658519 | None:intergenic | 30.0% |
| !! | AGAGAAGTTGATGTTAAATC+AGG | - | chr1_1:14658563-14658582 | Msa0009810:intron | 30.0% |
| !! | GAGAAGTTGATGTTAAATCA+GGG | - | chr1_1:14658564-14658583 | Msa0009810:intron | 30.0% |
| TACTACAAGTACAGAAAGAT+TGG | - | chr1_1:14658595-14658614 | Msa0009810:intron | 30.0% | |
| !!! | AAGTTTCTGGTCATTTTGTA+AGG | + | chr1_1:14658704-14658723 | None:intergenic | 30.0% |
| ! | ACTGGTAATTGAATCTTTTG+TGG | - | chr1_1:14658888-14658907 | Msa0009810:intron | 30.0% |
| ! | TTTGAGATTGCACTTGATAA+CGG | + | chr1_1:14658965-14658984 | None:intergenic | 30.0% |
| ATAATAAGAAGGTTCTTCCA+AGG | - | chr1_1:14659057-14659076 | Msa0009810:intron | 30.0% | |
| AGGATAATCAATAGAGCAAA+TGG | + | chr1_1:14659171-14659190 | None:intergenic | 30.0% | |
| GCAACAAACAAAGACACAAA+AGG | - | chr1_1:14656740-14656759 | Msa0009810:three_prime_UTR | 35.0% | |
| TAAGTAGTTTCCATGATCCA+TGG | - | chr1_1:14657001-14657020 | Msa0009810:CDS | 35.0% | |
| !!! | GATTTTTGTTGTTGGATGCA+TGG | - | chr1_1:14657400-14657419 | Msa0009810:CDS | 35.0% |
| TGTTTGACATCAACATGAGT+CGG | - | chr1_1:14657684-14657703 | Msa0009810:intron | 35.0% | |
| ! | CTGATCTGCTACTATCTTTT+AGG | - | chr1_1:14657822-14657841 | Msa0009810:intron | 35.0% |
| AAGCAAGCAATTTCCTTTAG+AGG | - | chr1_1:14657927-14657946 | Msa0009810:intron | 35.0% | |
| AGCAAGCAATTTCCTTTAGA+GGG | - | chr1_1:14657928-14657947 | Msa0009810:intron | 35.0% | |
| TTATCTGCTTTACCCTCTAA+AGG | + | chr1_1:14657943-14657962 | None:intergenic | 35.0% | |
| AGAAAATGAAGAGCGGTAAT+TGG | + | chr1_1:14658083-14658102 | None:intergenic | 35.0% | |
| TGGCATGTGTAAAAATCTTG+TGG | - | chr1_1:14658142-14658161 | Msa0009810:intron | 35.0% | |
| CATGTGTAAAAATCTTGTGG+TGG | - | chr1_1:14658145-14658164 | Msa0009810:intron | 35.0% | |
| ATTGAGGTTCGCTTTGTAAT+TGG | + | chr1_1:14658312-14658331 | None:intergenic | 35.0% | |
| ! | AGATTTGCTTTCTCTAGGTA+TGG | - | chr1_1:14658450-14658469 | Msa0009810:intron | 35.0% |
| ACAACACATCTGCTTACAAA+TGG | + | chr1_1:14658515-14658534 | None:intergenic | 35.0% | |
| TTGTAAGCAGATGTGTTGTA+AGG | - | chr1_1:14658516-14658535 | Msa0009810:intron | 35.0% | |
| TGTAAGCAGATGTGTTGTAA+GGG | - | chr1_1:14658517-14658536 | Msa0009810:intron | 35.0% | |
| CAGAGGAACAAAAAAGTTTC+TGG | + | chr1_1:14658717-14658736 | None:intergenic | 35.0% | |
| CATCTTTCAGAACTATTCGT+CGG | - | chr1_1:14658822-14658841 | Msa0009810:intron | 35.0% | |
| TTCCATCAATAATTTCAGGG+TGG | + | chr1_1:14658858-14658877 | None:intergenic | 35.0% | |
| ACCCTGAAATTATTGATGGA+AGG | - | chr1_1:14658857-14658876 | Msa0009810:intron | 35.0% | |
| GCCTTCCATCAATAATTTCA+GGG | + | chr1_1:14658861-14658880 | None:intergenic | 35.0% | |
| ! | GGTAATTGAATCTTTTGTGG+TGG | - | chr1_1:14658891-14658910 | Msa0009810:intron | 35.0% |
| !! | TGTTTGTTGCTTTCCTCATC+AGG | + | chr1_1:14656730-14656749 | None:intergenic | 40.0% |
| TGTTAGGCATATTAGAGCAC+CGG | - | chr1_1:14657276-14657295 | Msa0009810:CDS | 40.0% | |
| TGTTGTTGGATGCATGGTTA+TGG | - | chr1_1:14657406-14657425 | Msa0009810:CDS | 40.0% | |
| CAGTTATGGTTGTTGGAACT+TGG | - | chr1_1:14657448-14657467 | Msa0009810:intron | 40.0% | |
| GAGTATAACTCATCAGTGTC+GGG | + | chr1_1:14657604-14657623 | None:intergenic | 40.0% | |
| CGAGTATAACTCATCAGTGT+CGG | + | chr1_1:14657605-14657624 | None:intergenic | 40.0% | |
| CATCAACATGAGTCGGATAT+TGG | - | chr1_1:14657691-14657710 | Msa0009810:intron | 40.0% | |
| TTTATGGTTGACCTGCTTTG+TGG | - | chr1_1:14657788-14657807 | Msa0009810:intron | 40.0% | |
| ATCACATTGTACCACAAAGC+AGG | + | chr1_1:14657802-14657821 | None:intergenic | 40.0% | |
| CATCAAAGGTTCGATCAGAT+TGG | - | chr1_1:14658224-14658243 | Msa0009810:intron | 40.0% | |
| ! | AAGGTTCGATCAGATTGGTT+TGG | - | chr1_1:14658229-14658248 | Msa0009810:intron | 40.0% |
| GTAAGCAGATGTGTTGTAAG+GGG | - | chr1_1:14658518-14658537 | Msa0009810:intron | 40.0% | |
| CTTTCTGTACTTGTAGTAGC+AGG | + | chr1_1:14658593-14658612 | None:intergenic | 40.0% | |
| GAACATGCTCATTGTCATCA+AGG | + | chr1_1:14658625-14658644 | None:intergenic | 40.0% | |
| GTTCTCAGCATCAGGATTAT+TGG | - | chr1_1:14658641-14658660 | Msa0009810:CDS | 40.0% | |
| CTCCACCCTGAAATTATTGA+TGG | - | chr1_1:14658853-14658872 | Msa0009810:intron | 40.0% | |
| GGCCTTCCATCAATAATTTC+AGG | + | chr1_1:14658862-14658881 | None:intergenic | 40.0% | |
| GAAATTATTGATGGAAGGCC+AGG | - | chr1_1:14658862-14658881 | Msa0009810:intron | 40.0% | |
| GATTCAATTACCAGTGTACC+TGG | + | chr1_1:14658883-14658902 | None:intergenic | 40.0% | |
| !! | AGCTATTCCTTCTGAGACAT+CGG | + | chr1_1:14658995-14659014 | None:intergenic | 40.0% |
| TGAACCAATCGATCGAGTAT+AGG | - | chr1_1:14659029-14659048 | Msa0009810:intron | 40.0% | |
| GTAGTTTCCATGATCCATGG+TGG | - | chr1_1:14657004-14657023 | Msa0009810:CDS | 45.0% | |
| ! | GAAGCACACTGATTATGTCC+AGG | + | chr1_1:14657250-14657269 | None:intergenic | 45.0% |
| AGTGTGCTTCTGCTCTTGTT+AGG | - | chr1_1:14657260-14657279 | Msa0009810:CDS | 45.0% | |
| AAAGAAAGAAGGGCAACCTG+AGG | + | chr1_1:14657304-14657323 | None:intergenic | 45.0% | |
| GATCCTTGTGAAGCATAGTG+TGG | - | chr1_1:14657884-14657903 | Msa0009810:intron | 45.0% | |
| TGACCACACTATGCTTCACA+AGG | + | chr1_1:14657890-14657909 | None:intergenic | 45.0% | |
| ! | CGCGTAGATTTGCTTTCTCT+AGG | - | chr1_1:14658445-14658464 | Msa0009810:intron | 45.0% |
| CTTTCTCTAGGTATGGTCCT+TGG | - | chr1_1:14658457-14658476 | Msa0009810:intron | 45.0% | |
| AGGTATGGTCCTTGGTAAGA+AGG | - | chr1_1:14658465-14658484 | Msa0009810:intron | 45.0% | |
| CTGATCGAACCTTCTTACCA+AGG | + | chr1_1:14658477-14658496 | None:intergenic | 45.0% | |
| ATGAGCATGTTCTCAGCATC+AGG | - | chr1_1:14658633-14658652 | Msa0009810:CDS | 45.0% | |
| CTCAGCATCAGGATTATTGG+TGG | - | chr1_1:14658644-14658663 | Msa0009810:CDS | 45.0% | |
| !! | TGGTGGTGATCATCGACTTA+CGG | - | chr1_1:14658661-14658680 | Msa0009810:CDS | 45.0% |
| !!! | TTTTGTGGTGGATATACCCG+AGG | - | chr1_1:14658903-14658922 | Msa0009810:intron | 45.0% |
| !! | TTTGTGGTGGATATACCCGA+GGG | - | chr1_1:14658904-14658923 | Msa0009810:intron | 45.0% |
| GAAGTAGCAAGTCTCGTCTT+TGG | + | chr1_1:14658935-14658954 | None:intergenic | 45.0% | |
| AGCTCCTATACTCGATCGAT+TGG | + | chr1_1:14659036-14659055 | None:intergenic | 45.0% | |
| !!! | TATTCTTATTTTTTATTTTA+TGG | - | chr1_1:14657350-14657369 | Msa0009810:CDS | 5.0% |
| GATATTCAGAGTCGCCACCA+TGG | + | chr1_1:14657021-14657040 | None:intergenic | 50.0% | |
| !! | TATTAGAGCACCGGTTCCTC+AGG | - | chr1_1:14657285-14657304 | Msa0009810:CDS | 50.0% |
| GTAAGGGGAAACCTCGAGAT+CGG | - | chr1_1:14658533-14658552 | Msa0009810:intron | 50.0% | |
| CTCTTAGACTTCCGATCTCG+AGG | + | chr1_1:14658547-14658566 | None:intergenic | 50.0% | |
| !! | TTGTGGTGGATATACCCGAG+GGG | - | chr1_1:14658905-14658924 | Msa0009810:intron | 50.0% |
| TCACTTGCCGATGTCTCAGA+AGG | - | chr1_1:14658985-14659004 | Msa0009810:intron | 50.0% | |
| ! | CTCGATCGATTGGTTCAGTG+CGG | + | chr1_1:14659026-14659045 | None:intergenic | 50.0% |
| CCAAGGACATATAGCTGCCA+CGG | - | chr1_1:14659074-14659093 | Msa0009810:intron | 50.0% | |
| ! | AGCTTCAGCGGTTTTCCTCT+CGG | - | chr1_1:14659101-14659120 | Msa0009810:intron | 50.0% |
| AGAGTCGCCACCATGGATCA+TGG | + | chr1_1:14657014-14657033 | None:intergenic | 55.0% | |
| GATTATGTCCAGGCTGCTGC+CGG | + | chr1_1:14657240-14657259 | None:intergenic | 55.0% | |
| AGAAGGGCAACCTGAGGAAC+CGG | + | chr1_1:14657298-14657317 | None:intergenic | 55.0% | |
| TGATGGAAGGCCAGGTACAC+TGG | - | chr1_1:14658870-14658889 | Msa0009810:intron | 55.0% | |
| !! | TCGTCTTTGGTGTTCCCCTC+GGG | + | chr1_1:14658922-14658941 | None:intergenic | 55.0% |
| !! | CTCGTCTTTGGTGTTCCCCT+CGG | + | chr1_1:14658923-14658942 | None:intergenic | 55.0% |
| CCGTGGCAGCTATATGTCCT+TGG | + | chr1_1:14659077-14659096 | None:intergenic | 55.0% | |
| TGCCACGGATGAAGCTTCAG+CGG | - | chr1_1:14659089-14659108 | Msa0009810:intron | 55.0% | |
| AACCGCTGAAGCTTCATCCG+TGG | + | chr1_1:14659094-14659113 | None:intergenic | 55.0% | |
| ! | TTCAGCGGTTTTCCTCTCGG+AGG | - | chr1_1:14659104-14659123 | Msa0009810:intron | 55.0% |
| ! | GGTTTTCCTCTCGGAGGCTT+AGG | - | chr1_1:14659110-14659129 | Msa0009810:intron | 55.0% |
| CCTCTCGGAGGCTTAGGAGA+CGG | - | chr1_1:14659116-14659135 | Msa0009810:intron | 60.0% | |
| AGACATCACCGGCAGCAGCC+TGG | - | chr1_1:14657229-14657248 | Msa0009810:intron | 65.0% | |
| CCGTCTCCTAAGCCTCCGAG+AGG | + | chr1_1:14659119-14659138 | None:intergenic | 65.0% | |
| CGGAGGCTTAGGAGACGGAC+TGG | - | chr1_1:14659121-14659140 | Msa0009810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14656724 | 14659205 | 14656724 | ID=Msa0009810;Name=Msa0009810 |
| chr1_1 | mRNA | 14656724 | 14659205 | 14656724 | ID=Msa0009810-mRNA-1;Parent=Msa0009810;Name=Msa0009810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.5|0.75|1|1|4|155|221 |
| chr1_1 | exon | 14656724 | 14657097 | 14656724 | ID=Msa0009810-mRNA-1:exon:5420;Parent=Msa0009810-mRNA-1 |
| chr1_1 | exon | 14657247 | 14657462 | 14657247 | ID=Msa0009810-mRNA-1:exon:5419;Parent=Msa0009810-mRNA-1 |
| chr1_1 | exon | 14658623 | 14658799 | 14658623 | ID=Msa0009810-mRNA-1:exon:5418;Parent=Msa0009810-mRNA-1 |
| chr1_1 | exon | 14659152 | 14659205 | 14659152 | ID=Msa0009810-mRNA-1:exon:5417;Parent=Msa0009810-mRNA-1 |
| chr1_1 | CDS | 14659152 | 14659205 | 14659152 | ID=Msa0009810-mRNA-1:cds;Parent=Msa0009810-mRNA-1 |
| chr1_1 | CDS | 14658623 | 14658799 | 14658623 | ID=Msa0009810-mRNA-1:cds;Parent=Msa0009810-mRNA-1 |
| chr1_1 | CDS | 14657247 | 14657462 | 14657247 | ID=Msa0009810-mRNA-1:cds;Parent=Msa0009810-mRNA-1 |
| chr1_1 | CDS | 14656879 | 14657097 | 14656879 | ID=Msa0009810-mRNA-1:cds;Parent=Msa0009810-mRNA-1 |
| chr1_1 | three_prime_UTR | 14656724 | 14656878 | 14656724 | ID=Msa0009810-mRNA-1:three_prime_utr;Parent=Msa0009810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
