AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141990 MtrunA17_Chr1g0158871 95.789 190 4 1 18 203 1 190 6.70e-134 373
Msa0141990 MtrunA17_Chr3g0126471 86.842 190 22 1 17 203 3 192 1.70e-122 344
Msa0141990 MtrunA17_Chr8g0347191 73.743 179 47 0 23 201 64 242 4.69e-101 292
Msa0141990 MtrunA17_Chr3g0114121 50.575 174 81 4 27 198 61 231 5.40e-58 182
Msa0141990 MtrunA17_Chr7g0243271 56.213 169 68 3 30 192 11 179 8.74e-56 175
Msa0141990 MtrunA17_Chr5g0437611 52.147 163 72 3 30 189 44 203 2.20e-55 174
Msa0141990 MtrunA17_Chr4g0005501 49.689 161 80 1 32 191 49 209 9.90e-54 171
Msa0141990 MtrunA17_Chr1g0151661 49.686 159 77 2 32 188 39 196 4.60e-52 166
Msa0141990 MtrunA17_Chr5g0411391 49.398 166 77 3 31 190 43 207 5.65e-49 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141990 AT5G53160.2 75.676 185 43 1 16 198 1 185 1.71e-103 296
Msa0141990 AT1G01360.1 71.823 181 50 1 19 198 7 187 1.20e-95 276
Msa0141990 AT4G27920.1 65.761 184 61 2 18 200 1 183 2.09e-89 260
Msa0141990 AT4G01026.1 65.079 189 66 0 12 200 3 191 5.82e-87 255
Msa0141990 AT5G53160.1 72.650 117 30 1 16 130 1 117 2.49e-58 181
Msa0141990 AT2G38310.1 53.939 165 71 2 34 196 41 202 3.50e-54 172
Msa0141990 AT2G40330.1 48.503 167 82 2 30 192 46 212 3.05e-53 170
Msa0141990 AT5G05440.1 51.899 158 71 3 30 185 43 197 3.91e-53 169
Msa0141990 AT2G26040.1 47.619 168 83 3 32 195 22 188 2.08e-51 164
Msa0141990 AT4G17870.1 49.693 163 80 1 32 192 17 179 9.37e-49 157
Msa0141990 AT1G73000.1 41.573 178 92 3 24 190 30 206 7.34e-44 145
Msa0141990 AT5G45870.1 50.676 148 70 2 45 191 10 155 2.31e-39 132
Msa0141990 AT5G45860.1 49.091 165 75 3 29 192 1 157 2.48e-39 132
Msa0141990 AT5G46790.2 46.707 167 84 2 30 191 42 208 4.25e-39 134
Msa0141990 AT5G46790.1 46.707 167 84 2 30 191 42 208 4.25e-39 134
Msa0141990 AT4G18620.1 42.857 161 85 1 38 191 2 162 8.35e-35 121

Find 62 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTTCCATCAATAATTTC+AGG 0.233126 1_4:-776320 None:intergenic
AATTGGAAGGTTTAGTAATA+TGG 0.277883 1_4:+774648 Msa0141990:CDS
GTTCTCAGCATCAGGATTAT+TGG 0.292453 1_4:+776102 Msa0141990:CDS
AGGTATAGAAGAAGTATTAT+TGG 0.335658 1_4:+774607 Msa0141990:CDS
AGAGAAGTTGATGTTAAATC+AGG 0.349446 1_4:+776024 Msa0141990:CDS
CTCCACCCTGAAATTATTGA+TGG 0.373274 1_4:+776314 Msa0141990:CDS
CTCGTCTTTGGTGTTCCCCT+CGG 0.382151 1_4:-776381 None:intergenic
AGTGTGCTTCTGCTCTTGTT+AGG 0.382760 1_4:+774719 Msa0141990:CDS
AGGATAATCAATAGAGCAAA+TGG 0.398173 1_4:-776629 None:intergenic
CTTTCTCTAGGTATGGTCCT+TGG 0.413122 1_4:+775918 Msa0141990:intron
TTGTAAGCAGATGTGTTGTA+AGG 0.437036 1_4:+775977 Msa0141990:CDS
TCGTCTTTGGTGTTCCCCTC+GGG 0.441469 1_4:-776380 None:intergenic
GAAGTAGCAAGTCTCGTCTT+TGG 0.441478 1_4:-776393 None:intergenic
ACAACACATCTGCTTACAAA+TGG 0.446274 1_4:-775973 None:intergenic
ATGAGCATGTTCTCAGCATC+AGG 0.451170 1_4:+776094 Msa0141990:CDS
TATTAGAGCACCGGTTCCTC+AGG 0.466934 1_4:+774744 Msa0141990:CDS
CTTTCTGTACTTGTAGTAGC+AGG 0.476962 1_4:-776051 None:intergenic
GCCTTCCATCAATAATTTCA+GGG 0.477985 1_4:-776319 None:intergenic
AGCACAAGGATAATTTGAAT+AGG 0.478146 1_4:+774587 None:intergenic
TACTACAAGTACAGAAAGAT+TGG 0.478896 1_4:+776056 Msa0141990:CDS
GAAATTATTGATGGAAGGCC+AGG 0.481587 1_4:+776323 Msa0141990:CDS
AGCTCCTATACTCGATCGAT+TGG 0.485005 1_4:-776494 None:intergenic
TTTGAGATTGCACTTGATAA+CGG 0.486760 1_4:-776423 None:intergenic
AGGTATGGTCCTTGGTAAGA+AGG 0.487057 1_4:+775926 Msa0141990:intron
CCGTGGCAGCTATATGTCCT+TGG 0.491660 1_4:-776535 None:intergenic
AGACATCACCGGCAGCAGCC+TGG 0.504488 1_4:+774688 Msa0141990:CDS
AGAAGGGCAACCTGAGGAAC+CGG 0.506005 1_4:-774754 None:intergenic
TGGTGGTGATCATCGACTTA+CGG 0.507996 1_4:+776122 Msa0141990:CDS
TGATGGAAGGCCAGGTACAC+TGG 0.508216 1_4:+776331 Msa0141990:CDS
GATTATGTCCAGGCTGCTGC+CGG 0.530762 1_4:-774696 None:intergenic
CCTCTCGGAGGCTTAGGAGA+CGG 0.531163 1_4:+776577 Msa0141990:three_prime_UTR
GATTCAATTACCAGTGTACC+TGG 0.531597 1_4:-776341 None:intergenic
TGAACCAATCGATCGAGTAT+AGG 0.533084 1_4:+776490 Msa0141990:CDS
AGCTATTCCTTCTGAGACAT+CGG 0.534406 1_4:-776453 None:intergenic
AAGGTTTAGTAATATGGAGA+TGG 0.538000 1_4:+774654 Msa0141990:CDS
CTCTTAGACTTCCGATCTCG+AGG 0.539438 1_4:-776005 None:intergenic
TATAGGAGCTTATAATAAGA+AGG 0.540592 1_4:+776507 Msa0141990:exon
GAACATGCTCATTGTCATCA+AGG 0.542897 1_4:-776083 None:intergenic
ACCCTGAAATTATTGATGGA+AGG 0.546775 1_4:+776318 Msa0141990:CDS
TATAGAAGAAGTATTATTGG+AGG 0.548048 1_4:+774610 Msa0141990:CDS
CTCAGCATCAGGATTATTGG+TGG 0.555236 1_4:+776105 Msa0141990:CDS
TGTAAGCAGATGTGTTGTAA+GGG 0.557883 1_4:+775978 Msa0141990:CDS
TGTTAGGCATATTAGAGCAC+CGG 0.563370 1_4:+774735 Msa0141990:CDS
CATCTTTCAGAACTATTCGT+CGG 0.565624 1_4:+776283 Msa0141990:intron
ATAATAAGAAGGTTCTTCCA+AGG 0.568200 1_4:+776518 Msa0141990:three_prime_UTR
GAGAAGTTGATGTTAAATCA+GGG 0.568344 1_4:+776025 Msa0141990:CDS
GTAAGGGGAAACCTCGAGAT+CGG 0.576734 1_4:+775994 Msa0141990:CDS
CCAAGGACATATAGCTGCCA+CGG 0.577818 1_4:+776535 Msa0141990:three_prime_UTR
GTAAGCAGATGTGTTGTAAG+GGG 0.581576 1_4:+775979 Msa0141990:CDS
TCACTTGCCGATGTCTCAGA+AGG 0.585800 1_4:+776446 Msa0141990:CDS
GAAGCACACTGATTATGTCC+AGG 0.586081 1_4:-774706 None:intergenic
CGGAGGCTTAGGAGACGGAC+TGG 0.622375 1_4:+776582 Msa0141990:three_prime_UTR
GAAATCAGTATATATAACAA+AGG 0.630476 1_4:-776649 None:intergenic
AACCGCTGAAGCTTCATCCG+TGG 0.646785 1_4:-776552 None:intergenic
TTTGTGGTGGATATACCCGA+GGG 0.646946 1_4:+776365 Msa0141990:CDS
TGCCACGGATGAAGCTTCAG+CGG 0.648630 1_4:+776550 Msa0141990:three_prime_UTR
AATATATTAGAAGACATCAC+CGG 0.658365 1_4:+774677 Msa0141990:CDS
CTGATCGAACCTTCTTACCA+AGG 0.687829 1_4:-775935 None:intergenic
TTCCATCAATAATTTCAGGG+TGG 0.700428 1_4:-776316 None:intergenic
CCGTCTCCTAAGCCTCCGAG+AGG 0.714806 1_4:-776577 None:intergenic
CTCGATCGATTGGTTCAGTG+CGG 0.717158 1_4:-776484 None:intergenic
TTGTGGTGGATATACCCGAG+GGG 0.768021 1_4:+776366 Msa0141990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAACAAAAGAAAGAA+GGG - chr1_4:774773-774792 None:intergenic 15.0%
!!! TTCTAAAAAAACACTATTTA+AGG - chr1_4:774955-774974 None:intergenic 15.0%
!! AAAAGAACAAAATATAGTTA+TGG + chr1_4:774976-774995 Msa0141990:intron 15.0%
!!! TTTTTAAAGAAGAATCAATT+CGG - chr1_4:776230-776249 None:intergenic 15.0%
!! TAAAATAACAAAAGAAAGAA+GGG - chr1_4:774773-774792 None:intergenic 15.0%
!!! TTCTAAAAAAACACTATTTA+AGG - chr1_4:774955-774974 None:intergenic 15.0%
!! AAAAGAACAAAATATAGTTA+TGG + chr1_4:774976-774995 Msa0141990:intron 15.0%
!!! TTTTTAAAGAAGAATCAATT+CGG - chr1_4:776230-776249 None:intergenic 15.0%
!! GTAAAATAACAAAAGAAAGA+AGG - chr1_4:774774-774793 None:intergenic 20.0%
!! TGGTTATGTAAATGTTAAAA+CGG + chr1_4:774996-775015 Msa0141990:intron 20.0%
!! GTAATTTAAGAAAACAAAAG+TGG + chr1_4:775085-775104 Msa0141990:intron 20.0%
!!! TTCAATTTGATTTGAATTGT+TGG + chr1_4:775182-775201 Msa0141990:intron 20.0%
!!! TTGCTTTATTACTCTTTAAA+GGG + chr1_4:775462-775481 Msa0141990:intron 20.0%
!! TTTAAATAGAAAATGAAGAG+CGG - chr1_4:775551-775570 None:intergenic 20.0%
!! CATTATACAAAAATATTGTG+AGG - chr1_4:775856-775875 None:intergenic 20.0%
!! GTAAAATAACAAAAGAAAGA+AGG - chr1_4:774774-774793 None:intergenic 20.0%
!! TGGTTATGTAAATGTTAAAA+CGG + chr1_4:774996-775015 Msa0141990:intron 20.0%
!! GTAATTTAAGAAAACAAAAG+TGG + chr1_4:775085-775104 Msa0141990:intron 20.0%
!!! TTCAATTTGATTTGAATTGT+TGG + chr1_4:775182-775201 Msa0141990:intron 20.0%
!!! TTGCTTTATTACTCTTTAAA+GGG + chr1_4:775462-775481 Msa0141990:intron 20.0%
!! TTTAAATAGAAAATGAAGAG+CGG - chr1_4:775551-775570 None:intergenic 20.0%
!! CATTATACAAAAATATTGTG+AGG - chr1_4:775856-775875 None:intergenic 20.0%
!!! AGGTATAGAAGAAGTATTAT+TGG + chr1_4:774607-774626 Msa0141990:CDS 25.0%
!!! TATAGAAGAAGTATTATTGG+AGG + chr1_4:774610-774629 Msa0141990:CDS 25.0%
! TAAAAATGAATGGAATTGGA+AGG + chr1_4:774635-774654 Msa0141990:CDS 25.0%
! AATTGGAAGGTTTAGTAATA+TGG + chr1_4:774648-774667 Msa0141990:CDS 25.0%
! AATATATTAGAAGACATCAC+CGG + chr1_4:774677-774696 Msa0141990:CDS 25.0%
! TTGTGTTAGATATACAGTTA+TGG + chr1_4:774895-774914 Msa0141990:intron 25.0%
!!! GAATGTTTTGATGATGTTTT+TGG + chr1_4:775221-775240 Msa0141990:intron 25.0%
!!! GATGTTTTTGGTCTATTTTA+TGG + chr1_4:775233-775252 Msa0141990:intron 25.0%
!! ACTATTAATTTTCTCGACAA+CGG - chr1_4:775433-775452 None:intergenic 25.0%
! TTGTCGAGAAAATTAATAGT+TGG + chr1_4:775433-775452 Msa0141990:intron 25.0%
! TGTCGAGAAAATTAATAGTT+GGG + chr1_4:775434-775453 Msa0141990:intron 25.0%
!! CTTGCTTTATTACTCTTTAA+AGG + chr1_4:775461-775480 Msa0141990:intron 25.0%
! TAATTGGTATGAAATTTACG+GGG - chr1_4:775528-775547 None:intergenic 25.0%
! GTAATTGGTATGAAATTTAC+GGG - chr1_4:775529-775548 None:intergenic 25.0%
! GGTAATTGGTATGAAATTTA+CGG - chr1_4:775530-775549 None:intergenic 25.0%
!!! ACAATCTATTTTTGCATCTT+TGG + chr1_4:775583-775602 Msa0141990:intron 25.0%
! TGCTATTGAATAAAGAGTTT+CGG + chr1_4:775823-775842 Msa0141990:intron 25.0%
!! ATAAGATTTTAAGCAAACAG+AGG - chr1_4:776195-776214 None:intergenic 25.0%
! TCCTTAAAATGATAACTCTT+TGG + chr1_4:776258-776277 Msa0141990:intron 25.0%
!! ACCAAAGAGTTATCATTTTA+AGG - chr1_4:776262-776281 None:intergenic 25.0%
! TATAGGAGCTTATAATAAGA+AGG + chr1_4:776507-776526 Msa0141990:exon 25.0%
!!! AGGTATAGAAGAAGTATTAT+TGG + chr1_4:774607-774626 Msa0141990:CDS 25.0%
!!! TATAGAAGAAGTATTATTGG+AGG + chr1_4:774610-774629 Msa0141990:CDS 25.0%
! TAAAAATGAATGGAATTGGA+AGG + chr1_4:774635-774654 Msa0141990:CDS 25.0%
! AATTGGAAGGTTTAGTAATA+TGG + chr1_4:774648-774667 Msa0141990:CDS 25.0%
! AATATATTAGAAGACATCAC+CGG + chr1_4:774677-774696 Msa0141990:CDS 25.0%
! TTGTGTTAGATATACAGTTA+TGG + chr1_4:774895-774914 Msa0141990:intron 25.0%
!!! GAATGTTTTGATGATGTTTT+TGG + chr1_4:775221-775240 Msa0141990:intron 25.0%
!!! GATGTTTTTGGTCTATTTTA+TGG + chr1_4:775233-775252 Msa0141990:intron 25.0%
!! ACTATTAATTTTCTCGACAA+CGG - chr1_4:775433-775452 None:intergenic 25.0%
! TTGTCGAGAAAATTAATAGT+TGG + chr1_4:775433-775452 Msa0141990:intron 25.0%
! TGTCGAGAAAATTAATAGTT+GGG + chr1_4:775434-775453 Msa0141990:intron 25.0%
!! CTTGCTTTATTACTCTTTAA+AGG + chr1_4:775461-775480 Msa0141990:intron 25.0%
! TAATTGGTATGAAATTTACG+GGG - chr1_4:775528-775547 None:intergenic 25.0%
! GTAATTGGTATGAAATTTAC+GGG - chr1_4:775529-775548 None:intergenic 25.0%
! GGTAATTGGTATGAAATTTA+CGG - chr1_4:775530-775549 None:intergenic 25.0%
!!! ACAATCTATTTTTGCATCTT+TGG + chr1_4:775583-775602 Msa0141990:intron 25.0%
! TGCTATTGAATAAAGAGTTT+CGG + chr1_4:775823-775842 Msa0141990:intron 25.0%
!! ATAAGATTTTAAGCAAACAG+AGG - chr1_4:776195-776214 None:intergenic 25.0%
! TCCTTAAAATGATAACTCTT+TGG + chr1_4:776258-776277 Msa0141990:intron 25.0%
!! ACCAAAGAGTTATCATTTTA+AGG - chr1_4:776262-776281 None:intergenic 25.0%
! TATAGGAGCTTATAATAAGA+AGG + chr1_4:776507-776526 Msa0141990:exon 25.0%
! ATTGGAGGTGTAAAAATGAA+TGG + chr1_4:774625-774644 Msa0141990:CDS 30.0%
GGTGTAAAAATGAATGGAAT+TGG + chr1_4:774631-774650 Msa0141990:CDS 30.0%
AAGGTTTAGTAATATGGAGA+TGG + chr1_4:774654-774673 Msa0141990:CDS 30.0%
!! TGTGTGAAGATTTTTGTTGT+TGG + chr1_4:774853-774872 Msa0141990:intron 30.0%
AGATATACAGTTATGGTTGT+TGG + chr1_4:774902-774921 Msa0141990:intron 30.0%
!! TAAAACGGTTAGCTGATTTT+TGG + chr1_4:775011-775030 Msa0141990:intron 30.0%
!!! TGCTACTATCTTTTAGGTTT+TGG + chr1_4:775289-775308 Msa0141990:intron 30.0%
!!! ATGCATTTTTAGCACATCAA+AGG + chr1_4:775671-775690 Msa0141990:intron 30.0%
GAAAAAATCGAACTGAATTG+AGG - chr1_4:775789-775808 None:intergenic 30.0%
AAATAAACATCACACAACGA+GGG - chr1_4:775882-775901 None:intergenic 30.0%
TAAATAAACATCACACAACG+AGG - chr1_4:775883-775902 None:intergenic 30.0%
!! ACAAATGGTTTGTACTTTTG+TGG - chr1_4:775961-775980 None:intergenic 30.0%
!! AGAGAAGTTGATGTTAAATC+AGG + chr1_4:776024-776043 Msa0141990:CDS 30.0%
!! GAGAAGTTGATGTTAAATCA+GGG + chr1_4:776025-776044 Msa0141990:CDS 30.0%
TACTACAAGTACAGAAAGAT+TGG + chr1_4:776056-776075 Msa0141990:CDS 30.0%
!!! AAGTTTCTGGTCATTTTGTA+AGG - chr1_4:776165-776184 None:intergenic 30.0%
! ACTGGTAATTGAATCTTTTG+TGG + chr1_4:776349-776368 Msa0141990:CDS 30.0%
! TTTGAGATTGCACTTGATAA+CGG - chr1_4:776426-776445 None:intergenic 30.0%
ATAATAAGAAGGTTCTTCCA+AGG + chr1_4:776518-776537 Msa0141990:three_prime_UTR 30.0%
AGGATAATCAATAGAGCAAA+TGG - chr1_4:776632-776651 None:intergenic 30.0%
! ATTGGAGGTGTAAAAATGAA+TGG + chr1_4:774625-774644 Msa0141990:CDS 30.0%
GGTGTAAAAATGAATGGAAT+TGG + chr1_4:774631-774650 Msa0141990:CDS 30.0%
AAGGTTTAGTAATATGGAGA+TGG + chr1_4:774654-774673 Msa0141990:CDS 30.0%
!! TGTGTGAAGATTTTTGTTGT+TGG + chr1_4:774853-774872 Msa0141990:intron 30.0%
AGATATACAGTTATGGTTGT+TGG + chr1_4:774902-774921 Msa0141990:intron 30.0%
!! TAAAACGGTTAGCTGATTTT+TGG + chr1_4:775011-775030 Msa0141990:intron 30.0%
!!! TGCTACTATCTTTTAGGTTT+TGG + chr1_4:775289-775308 Msa0141990:intron 30.0%
!!! ATGCATTTTTAGCACATCAA+AGG + chr1_4:775671-775690 Msa0141990:intron 30.0%
GAAAAAATCGAACTGAATTG+AGG - chr1_4:775789-775808 None:intergenic 30.0%
AAATAAACATCACACAACGA+GGG - chr1_4:775882-775901 None:intergenic 30.0%
TAAATAAACATCACACAACG+AGG - chr1_4:775883-775902 None:intergenic 30.0%
!! ACAAATGGTTTGTACTTTTG+TGG - chr1_4:775961-775980 None:intergenic 30.0%
!! AGAGAAGTTGATGTTAAATC+AGG + chr1_4:776024-776043 Msa0141990:CDS 30.0%
!! GAGAAGTTGATGTTAAATCA+GGG + chr1_4:776025-776044 Msa0141990:CDS 30.0%
TACTACAAGTACAGAAAGAT+TGG + chr1_4:776056-776075 Msa0141990:CDS 30.0%
!!! AAGTTTCTGGTCATTTTGTA+AGG - chr1_4:776165-776184 None:intergenic 30.0%
! ACTGGTAATTGAATCTTTTG+TGG + chr1_4:776349-776368 Msa0141990:CDS 30.0%
! TTTGAGATTGCACTTGATAA+CGG - chr1_4:776426-776445 None:intergenic 30.0%
ATAATAAGAAGGTTCTTCCA+AGG + chr1_4:776518-776537 Msa0141990:three_prime_UTR 30.0%
AGGATAATCAATAGAGCAAA+TGG - chr1_4:776632-776651 None:intergenic 30.0%
!!! GATTTTTGTTGTTGGATGCA+TGG + chr1_4:774861-774880 Msa0141990:intron 35.0%
TGTTTGACATCAACATGAGT+CGG + chr1_4:775145-775164 Msa0141990:intron 35.0%
! CTGATCTGCTACTATCTTTT+AGG + chr1_4:775283-775302 Msa0141990:intron 35.0%
AAGCAAGCAATTTCCTTTAG+AGG + chr1_4:775388-775407 Msa0141990:intron 35.0%
AGCAAGCAATTTCCTTTAGA+GGG + chr1_4:775389-775408 Msa0141990:intron 35.0%
TTATCTGCTTTACCCTCTAA+AGG - chr1_4:775404-775423 None:intergenic 35.0%
AGAAAATGAAGAGCGGTAAT+TGG - chr1_4:775544-775563 None:intergenic 35.0%
TGGCATGTGTAAAAATCTTG+TGG + chr1_4:775603-775622 Msa0141990:intron 35.0%
CATGTGTAAAAATCTTGTGG+TGG + chr1_4:775606-775625 Msa0141990:intron 35.0%
ATTGAGGTTCGCTTTGTAAT+TGG - chr1_4:775773-775792 None:intergenic 35.0%
! AGATTTGCTTTCTCTAGGTA+TGG + chr1_4:775911-775930 Msa0141990:intron 35.0%
ACAACACATCTGCTTACAAA+TGG - chr1_4:775976-775995 None:intergenic 35.0%
TTGTAAGCAGATGTGTTGTA+AGG + chr1_4:775977-775996 Msa0141990:CDS 35.0%
TGTAAGCAGATGTGTTGTAA+GGG + chr1_4:775978-775997 Msa0141990:CDS 35.0%
CAGAGGAACAAAAAAGTTTC+TGG - chr1_4:776178-776197 None:intergenic 35.0%
CATCTTTCAGAACTATTCGT+CGG + chr1_4:776283-776302 Msa0141990:intron 35.0%
TTCCATCAATAATTTCAGGG+TGG - chr1_4:776319-776338 None:intergenic 35.0%
ACCCTGAAATTATTGATGGA+AGG + chr1_4:776318-776337 Msa0141990:CDS 35.0%
GCCTTCCATCAATAATTTCA+GGG - chr1_4:776322-776341 None:intergenic 35.0%
! GGTAATTGAATCTTTTGTGG+TGG + chr1_4:776352-776371 Msa0141990:CDS 35.0%
!!! GATTTTTGTTGTTGGATGCA+TGG + chr1_4:774861-774880 Msa0141990:intron 35.0%
TGTTTGACATCAACATGAGT+CGG + chr1_4:775145-775164 Msa0141990:intron 35.0%
! CTGATCTGCTACTATCTTTT+AGG + chr1_4:775283-775302 Msa0141990:intron 35.0%
AAGCAAGCAATTTCCTTTAG+AGG + chr1_4:775388-775407 Msa0141990:intron 35.0%
AGCAAGCAATTTCCTTTAGA+GGG + chr1_4:775389-775408 Msa0141990:intron 35.0%
TTATCTGCTTTACCCTCTAA+AGG - chr1_4:775404-775423 None:intergenic 35.0%
AGAAAATGAAGAGCGGTAAT+TGG - chr1_4:775544-775563 None:intergenic 35.0%
TGGCATGTGTAAAAATCTTG+TGG + chr1_4:775603-775622 Msa0141990:intron 35.0%
CATGTGTAAAAATCTTGTGG+TGG + chr1_4:775606-775625 Msa0141990:intron 35.0%
ATTGAGGTTCGCTTTGTAAT+TGG - chr1_4:775773-775792 None:intergenic 35.0%
! AGATTTGCTTTCTCTAGGTA+TGG + chr1_4:775911-775930 Msa0141990:intron 35.0%
ACAACACATCTGCTTACAAA+TGG - chr1_4:775976-775995 None:intergenic 35.0%
TTGTAAGCAGATGTGTTGTA+AGG + chr1_4:775977-775996 Msa0141990:CDS 35.0%
TGTAAGCAGATGTGTTGTAA+GGG + chr1_4:775978-775997 Msa0141990:CDS 35.0%
CAGAGGAACAAAAAAGTTTC+TGG - chr1_4:776178-776197 None:intergenic 35.0%
CATCTTTCAGAACTATTCGT+CGG + chr1_4:776283-776302 Msa0141990:intron 35.0%
TTCCATCAATAATTTCAGGG+TGG - chr1_4:776319-776338 None:intergenic 35.0%
ACCCTGAAATTATTGATGGA+AGG + chr1_4:776318-776337 Msa0141990:CDS 35.0%
GCCTTCCATCAATAATTTCA+GGG - chr1_4:776322-776341 None:intergenic 35.0%
! GGTAATTGAATCTTTTGTGG+TGG + chr1_4:776352-776371 Msa0141990:CDS 35.0%
TGTTAGGCATATTAGAGCAC+CGG + chr1_4:774735-774754 Msa0141990:CDS 40.0%
TGTTGTTGGATGCATGGTTA+TGG + chr1_4:774867-774886 Msa0141990:intron 40.0%
CAGTTATGGTTGTTGGAACT+TGG + chr1_4:774909-774928 Msa0141990:intron 40.0%
GAGTATAACTCATCAGTGTC+GGG - chr1_4:775065-775084 None:intergenic 40.0%
CGAGTATAACTCATCAGTGT+CGG - chr1_4:775066-775085 None:intergenic 40.0%
CATCAACATGAGTCGGATAT+TGG + chr1_4:775152-775171 Msa0141990:intron 40.0%
TTTATGGTTGACCTGCTTTG+TGG + chr1_4:775249-775268 Msa0141990:intron 40.0%
ATCACATTGTACCACAAAGC+AGG - chr1_4:775263-775282 None:intergenic 40.0%
CATCAAAGGTTCGATCAGAT+TGG + chr1_4:775685-775704 Msa0141990:intron 40.0%
! AAGGTTCGATCAGATTGGTT+TGG + chr1_4:775690-775709 Msa0141990:intron 40.0%
GTAAGCAGATGTGTTGTAAG+GGG + chr1_4:775979-775998 Msa0141990:CDS 40.0%
CTTTCTGTACTTGTAGTAGC+AGG - chr1_4:776054-776073 None:intergenic 40.0%
GAACATGCTCATTGTCATCA+AGG - chr1_4:776086-776105 None:intergenic 40.0%
GTTCTCAGCATCAGGATTAT+TGG + chr1_4:776102-776121 Msa0141990:CDS 40.0%
CTCCACCCTGAAATTATTGA+TGG + chr1_4:776314-776333 Msa0141990:CDS 40.0%
GGCCTTCCATCAATAATTTC+AGG - chr1_4:776323-776342 None:intergenic 40.0%
GAAATTATTGATGGAAGGCC+AGG + chr1_4:776323-776342 Msa0141990:CDS 40.0%
GATTCAATTACCAGTGTACC+TGG - chr1_4:776344-776363 None:intergenic 40.0%
!! AGCTATTCCTTCTGAGACAT+CGG - chr1_4:776456-776475 None:intergenic 40.0%
TGAACCAATCGATCGAGTAT+AGG + chr1_4:776490-776509 Msa0141990:CDS 40.0%
TGTTAGGCATATTAGAGCAC+CGG + chr1_4:774735-774754 Msa0141990:CDS 40.0%
TGTTGTTGGATGCATGGTTA+TGG + chr1_4:774867-774886 Msa0141990:intron 40.0%
CAGTTATGGTTGTTGGAACT+TGG + chr1_4:774909-774928 Msa0141990:intron 40.0%
GAGTATAACTCATCAGTGTC+GGG - chr1_4:775065-775084 None:intergenic 40.0%
CGAGTATAACTCATCAGTGT+CGG - chr1_4:775066-775085 None:intergenic 40.0%
CATCAACATGAGTCGGATAT+TGG + chr1_4:775152-775171 Msa0141990:intron 40.0%
TTTATGGTTGACCTGCTTTG+TGG + chr1_4:775249-775268 Msa0141990:intron 40.0%
ATCACATTGTACCACAAAGC+AGG - chr1_4:775263-775282 None:intergenic 40.0%
CATCAAAGGTTCGATCAGAT+TGG + chr1_4:775685-775704 Msa0141990:intron 40.0%
! AAGGTTCGATCAGATTGGTT+TGG + chr1_4:775690-775709 Msa0141990:intron 40.0%
GTAAGCAGATGTGTTGTAAG+GGG + chr1_4:775979-775998 Msa0141990:CDS 40.0%
CTTTCTGTACTTGTAGTAGC+AGG - chr1_4:776054-776073 None:intergenic 40.0%
GAACATGCTCATTGTCATCA+AGG - chr1_4:776086-776105 None:intergenic 40.0%
GTTCTCAGCATCAGGATTAT+TGG + chr1_4:776102-776121 Msa0141990:CDS 40.0%
CTCCACCCTGAAATTATTGA+TGG + chr1_4:776314-776333 Msa0141990:CDS 40.0%
GGCCTTCCATCAATAATTTC+AGG - chr1_4:776323-776342 None:intergenic 40.0%
GAAATTATTGATGGAAGGCC+AGG + chr1_4:776323-776342 Msa0141990:CDS 40.0%
GATTCAATTACCAGTGTACC+TGG - chr1_4:776344-776363 None:intergenic 40.0%
!! AGCTATTCCTTCTGAGACAT+CGG - chr1_4:776456-776475 None:intergenic 40.0%
TGAACCAATCGATCGAGTAT+AGG + chr1_4:776490-776509 Msa0141990:CDS 40.0%
! GAAGCACACTGATTATGTCC+AGG - chr1_4:774709-774728 None:intergenic 45.0%
AGTGTGCTTCTGCTCTTGTT+AGG + chr1_4:774719-774738 Msa0141990:CDS 45.0%
AAAGAAAGAAGGGCAACCTG+AGG - chr1_4:774763-774782 None:intergenic 45.0%
GATCCTTGTGAAGCATAGTG+TGG + chr1_4:775345-775364 Msa0141990:intron 45.0%
TGACCACACTATGCTTCACA+AGG - chr1_4:775351-775370 None:intergenic 45.0%
! CGCGTAGATTTGCTTTCTCT+AGG + chr1_4:775906-775925 Msa0141990:intron 45.0%
CTTTCTCTAGGTATGGTCCT+TGG + chr1_4:775918-775937 Msa0141990:intron 45.0%
AGGTATGGTCCTTGGTAAGA+AGG + chr1_4:775926-775945 Msa0141990:intron 45.0%
CTGATCGAACCTTCTTACCA+AGG - chr1_4:775938-775957 None:intergenic 45.0%
ATGAGCATGTTCTCAGCATC+AGG + chr1_4:776094-776113 Msa0141990:CDS 45.0%
CTCAGCATCAGGATTATTGG+TGG + chr1_4:776105-776124 Msa0141990:CDS 45.0%
!! TGGTGGTGATCATCGACTTA+CGG + chr1_4:776122-776141 Msa0141990:CDS 45.0%
!!! TTTTGTGGTGGATATACCCG+AGG + chr1_4:776364-776383 Msa0141990:CDS 45.0%
!! TTTGTGGTGGATATACCCGA+GGG + chr1_4:776365-776384 Msa0141990:CDS 45.0%
GAAGTAGCAAGTCTCGTCTT+TGG - chr1_4:776396-776415 None:intergenic 45.0%
AGCTCCTATACTCGATCGAT+TGG - chr1_4:776497-776516 None:intergenic 45.0%
! GAAGCACACTGATTATGTCC+AGG - chr1_4:774709-774728 None:intergenic 45.0%
AGTGTGCTTCTGCTCTTGTT+AGG + chr1_4:774719-774738 Msa0141990:CDS 45.0%
AAAGAAAGAAGGGCAACCTG+AGG - chr1_4:774763-774782 None:intergenic 45.0%
GATCCTTGTGAAGCATAGTG+TGG + chr1_4:775345-775364 Msa0141990:intron 45.0%
TGACCACACTATGCTTCACA+AGG - chr1_4:775351-775370 None:intergenic 45.0%
! CGCGTAGATTTGCTTTCTCT+AGG + chr1_4:775906-775925 Msa0141990:intron 45.0%
CTTTCTCTAGGTATGGTCCT+TGG + chr1_4:775918-775937 Msa0141990:intron 45.0%
AGGTATGGTCCTTGGTAAGA+AGG + chr1_4:775926-775945 Msa0141990:intron 45.0%
CTGATCGAACCTTCTTACCA+AGG - chr1_4:775938-775957 None:intergenic 45.0%
ATGAGCATGTTCTCAGCATC+AGG + chr1_4:776094-776113 Msa0141990:CDS 45.0%
CTCAGCATCAGGATTATTGG+TGG + chr1_4:776105-776124 Msa0141990:CDS 45.0%
!! TGGTGGTGATCATCGACTTA+CGG + chr1_4:776122-776141 Msa0141990:CDS 45.0%
!!! TTTTGTGGTGGATATACCCG+AGG + chr1_4:776364-776383 Msa0141990:CDS 45.0%
!! TTTGTGGTGGATATACCCGA+GGG + chr1_4:776365-776384 Msa0141990:CDS 45.0%
GAAGTAGCAAGTCTCGTCTT+TGG - chr1_4:776396-776415 None:intergenic 45.0%
AGCTCCTATACTCGATCGAT+TGG - chr1_4:776497-776516 None:intergenic 45.0%
!!! TATTCTTATTTTTTATTTTA+TGG + chr1_4:774811-774830 Msa0141990:intron 5.0%
!!! TATTCTTATTTTTTATTTTA+TGG + chr1_4:774811-774830 Msa0141990:intron 5.0%
!! TATTAGAGCACCGGTTCCTC+AGG + chr1_4:774744-774763 Msa0141990:CDS 50.0%
GTAAGGGGAAACCTCGAGAT+CGG + chr1_4:775994-776013 Msa0141990:CDS 50.0%
CTCTTAGACTTCCGATCTCG+AGG - chr1_4:776008-776027 None:intergenic 50.0%
!! TTGTGGTGGATATACCCGAG+GGG + chr1_4:776366-776385 Msa0141990:CDS 50.0%
TCACTTGCCGATGTCTCAGA+AGG + chr1_4:776446-776465 Msa0141990:CDS 50.0%
! CTCGATCGATTGGTTCAGTG+CGG - chr1_4:776487-776506 None:intergenic 50.0%
CCAAGGACATATAGCTGCCA+CGG + chr1_4:776535-776554 Msa0141990:three_prime_UTR 50.0%
! AGCTTCAGCGGTTTTCCTCT+CGG + chr1_4:776562-776581 Msa0141990:three_prime_UTR 50.0%
!! TATTAGAGCACCGGTTCCTC+AGG + chr1_4:774744-774763 Msa0141990:CDS 50.0%
GTAAGGGGAAACCTCGAGAT+CGG + chr1_4:775994-776013 Msa0141990:CDS 50.0%
CTCTTAGACTTCCGATCTCG+AGG - chr1_4:776008-776027 None:intergenic 50.0%
!! TTGTGGTGGATATACCCGAG+GGG + chr1_4:776366-776385 Msa0141990:CDS 50.0%
TCACTTGCCGATGTCTCAGA+AGG + chr1_4:776446-776465 Msa0141990:CDS 50.0%
! CTCGATCGATTGGTTCAGTG+CGG - chr1_4:776487-776506 None:intergenic 50.0%
CCAAGGACATATAGCTGCCA+CGG + chr1_4:776535-776554 Msa0141990:three_prime_UTR 50.0%
! AGCTTCAGCGGTTTTCCTCT+CGG + chr1_4:776562-776581 Msa0141990:three_prime_UTR 50.0%
GATTATGTCCAGGCTGCTGC+CGG - chr1_4:774699-774718 None:intergenic 55.0%
AGAAGGGCAACCTGAGGAAC+CGG - chr1_4:774757-774776 None:intergenic 55.0%
TGATGGAAGGCCAGGTACAC+TGG + chr1_4:776331-776350 Msa0141990:CDS 55.0%
!! TCGTCTTTGGTGTTCCCCTC+GGG - chr1_4:776383-776402 None:intergenic 55.0%
!! CTCGTCTTTGGTGTTCCCCT+CGG - chr1_4:776384-776403 None:intergenic 55.0%
CCGTGGCAGCTATATGTCCT+TGG - chr1_4:776538-776557 None:intergenic 55.0%
TGCCACGGATGAAGCTTCAG+CGG + chr1_4:776550-776569 Msa0141990:three_prime_UTR 55.0%
AACCGCTGAAGCTTCATCCG+TGG - chr1_4:776555-776574 None:intergenic 55.0%
! TTCAGCGGTTTTCCTCTCGG+AGG + chr1_4:776565-776584 Msa0141990:three_prime_UTR 55.0%
! GGTTTTCCTCTCGGAGGCTT+AGG + chr1_4:776571-776590 Msa0141990:three_prime_UTR 55.0%
GATTATGTCCAGGCTGCTGC+CGG - chr1_4:774699-774718 None:intergenic 55.0%
AGAAGGGCAACCTGAGGAAC+CGG - chr1_4:774757-774776 None:intergenic 55.0%
TGATGGAAGGCCAGGTACAC+TGG + chr1_4:776331-776350 Msa0141990:CDS 55.0%
!! TCGTCTTTGGTGTTCCCCTC+GGG - chr1_4:776383-776402 None:intergenic 55.0%
!! CTCGTCTTTGGTGTTCCCCT+CGG - chr1_4:776384-776403 None:intergenic 55.0%
CCGTGGCAGCTATATGTCCT+TGG - chr1_4:776538-776557 None:intergenic 55.0%
TGCCACGGATGAAGCTTCAG+CGG + chr1_4:776550-776569 Msa0141990:three_prime_UTR 55.0%
AACCGCTGAAGCTTCATCCG+TGG - chr1_4:776555-776574 None:intergenic 55.0%
! TTCAGCGGTTTTCCTCTCGG+AGG + chr1_4:776565-776584 Msa0141990:three_prime_UTR 55.0%
! GGTTTTCCTCTCGGAGGCTT+AGG + chr1_4:776571-776590 Msa0141990:three_prime_UTR 55.0%
CCTCTCGGAGGCTTAGGAGA+CGG + chr1_4:776577-776596 Msa0141990:three_prime_UTR 60.0%
CCTCTCGGAGGCTTAGGAGA+CGG + chr1_4:776577-776596 Msa0141990:three_prime_UTR 60.0%
AGACATCACCGGCAGCAGCC+TGG + chr1_4:774688-774707 Msa0141990:CDS 65.0%
CCGTCTCCTAAGCCTCCGAG+AGG - chr1_4:776580-776599 None:intergenic 65.0%
CGGAGGCTTAGGAGACGGAC+TGG + chr1_4:776582-776601 Msa0141990:three_prime_UTR 65.0%
AGACATCACCGGCAGCAGCC+TGG + chr1_4:774688-774707 Msa0141990:CDS 65.0%
CCGTCTCCTAAGCCTCCGAG+AGG - chr1_4:776580-776599 None:intergenic 65.0%
CGGAGGCTTAGGAGACGGAC+TGG + chr1_4:776582-776601 Msa0141990:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 774589 776666 774589 ID=Msa0141990;Name=Msa0141990
chr1_4 mRNA 774589 776666 774589 ID=Msa0141990-mRNA-1;Parent=Msa0141990;Name=Msa0141990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.66|1|1|1|3|155|203
chr1_4 exon 774589 774765 774589 ID=Msa0141990-mRNA-1:exon:165;Parent=Msa0141990-mRNA-1
chr1_4 exon 775928 776143 775928 ID=Msa0141990-mRNA-1:exon:166;Parent=Msa0141990-mRNA-1
chr1_4 exon 776293 776666 776293 ID=Msa0141990-mRNA-1:exon:167;Parent=Msa0141990-mRNA-1
chr1_4 CDS 774589 774765 774589 ID=Msa0141990-mRNA-1:cds;Parent=Msa0141990-mRNA-1
chr1_4 CDS 775928 776143 775928 ID=Msa0141990-mRNA-1:cds;Parent=Msa0141990-mRNA-1
chr1_4 CDS 776293 776511 776293 ID=Msa0141990-mRNA-1:cds;Parent=Msa0141990-mRNA-1
chr1_4 three_prime_UTR 776512 776666 776512 ID=Msa0141990-mRNA-1:three_prime_utr;Parent=Msa0141990-mRNA-1
Gene Sequence

>Msa0141990

CACAAGGATAATTTGAATAGGTATAGAAGAAGTATTATTGGAGGTGTAAAAATGAATGGAATTGGAAGGTTTAGTAATATGGAGATGGAATATATTAGAAGACATCACCGGCAGCAGCCTGGACATAATCAGTGTGCTTCTGCTCTTGTTAGGCATATTAGAGCACCGGTTCCTCAGGTATGGTCCTTGGTAAGAAGGTTCGATCAGCCACAAAAGTACAAACCATTTGTAAGCAGATGTGTTGTAAGGGGAAACCTCGAGATCGGAAGTCTAAGAGAAGTTGATGTTAAATCAGGGCTTCCTGCTACTACAAGTACAGAAAGATTGGAGCTCCTTGATGACAATGAGCATGTTCTCAGCATCAGGATTATTGGTGGTGATCATCGACTTACGAACTATTCGTCGGTGATGTCTCTCCACCCTGAAATTATTGATGGAAGGCCAGGTACACTGGTAATTGAATCTTTTGTGGTGGATATACCCGAGGGGAACACCAAAGACGAGACTTGCTACTTCGTTGAAGCCGTTATCAAGTGCAATCTCAAATCACTTGCCGATGTCTCAGAAGGAATAGCTTTACAAGACCGCACTGAACCAATCGATCGAGTATAG

Protein sequence

>Msa0141990

HKDNLNRYRRSIIGGVKMNGIGRFSNMEMEYIRRHHRQQPGHNQCASALVRHIRAPVPQVWSLVRRFDQPQKYKPFVSRCVVRGNLEIGSLREVDVKSGLPATTSTERLELLDDNEHVLSIRIIGGDHRLTNYSSVMSLHPEIIDGRPGTLVIESFVVDIPEGNTKDETCYFVEAVIKCNLKSLADVSEGIALQDRTEPIDRV*