Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104430 | sp|Q9FGM1|PYL8_ARATH | 76.216 | 185 | 42 | 1 | 34 | 216 | 1 | 185 | 6.14e-103 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104430 | A0A072VQL7 | 96.316 | 190 | 3 | 1 | 36 | 221 | 1 | 190 | 6.71e-131 | 375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009810 | Msa0104430 | 0.842991 | 1.843872e-58 | -8.615850e-47 |
| Msa0009880 | Msa0104430 | 0.841112 | 5.787836e-58 | -8.615850e-47 |
| Msa0015930 | Msa0104430 | 0.814740 | 1.320781e-51 | -8.615850e-47 |
| Msa0059580 | Msa0104430 | 0.959425 | 1.991546e-117 | -8.615850e-47 |
| Msa0104430 | Msa0141990 | 0.828872 | 7.059194e-55 | -8.615850e-47 |
| Msa0104430 | Msa0156370 | 0.808144 | 3.578742e-50 | -8.615850e-47 |
| Msa0104430 | Msa0550150 | 0.820781 | 5.720654e-53 | -8.615850e-47 |
| Msa0104430 | Msa0605630 | 0.802894 | 4.517751e-49 | -8.615850e-47 |
| Msa0104430 | Msa0605650 | 0.802421 | 5.655626e-49 | -8.615850e-47 |
| Msa0104430 | Msa0646580 | 0.801407 | 9.137265e-49 | -8.615850e-47 |
| Msa0104430 | Msa0867730 | 0.838674 | 2.499022e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104430 | MtrunA17_Chr1g0158871 | 96.316 | 190 | 3 | 1 | 36 | 221 | 1 | 190 | 1.29e-134 | 375 |
| Msa0104430 | MtrunA17_Chr3g0126471 | 87.368 | 190 | 21 | 1 | 35 | 221 | 3 | 192 | 5.51e-123 | 346 |
| Msa0104430 | MtrunA17_Chr8g0347191 | 74.302 | 179 | 46 | 0 | 41 | 219 | 64 | 242 | 1.63e-101 | 294 |
| Msa0104430 | MtrunA17_Chr3g0114121 | 52.727 | 165 | 73 | 4 | 45 | 207 | 61 | 222 | 3.38e-58 | 183 |
| Msa0104430 | MtrunA17_Chr7g0243271 | 56.213 | 169 | 68 | 3 | 48 | 210 | 11 | 179 | 4.96e-56 | 176 |
| Msa0104430 | MtrunA17_Chr5g0437611 | 52.147 | 163 | 72 | 3 | 48 | 207 | 44 | 203 | 1.46e-55 | 176 |
| Msa0104430 | MtrunA17_Chr4g0005501 | 49.689 | 161 | 80 | 1 | 50 | 209 | 49 | 209 | 9.46e-54 | 171 |
| Msa0104430 | MtrunA17_Chr1g0151661 | 49.686 | 159 | 77 | 2 | 50 | 206 | 39 | 196 | 6.74e-52 | 166 |
| Msa0104430 | MtrunA17_Chr5g0411391 | 49.398 | 166 | 77 | 3 | 49 | 208 | 43 | 207 | 5.44e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104430 | AT5G53160.2 | 76.216 | 185 | 42 | 1 | 34 | 216 | 1 | 185 | 6.24e-104 | 298 |
| Msa0104430 | AT1G01360.1 | 72.376 | 181 | 49 | 1 | 37 | 216 | 7 | 187 | 4.34e-96 | 278 |
| Msa0104430 | AT4G27920.1 | 69.942 | 173 | 50 | 2 | 36 | 207 | 1 | 172 | 1.66e-89 | 261 |
| Msa0104430 | AT4G01026.1 | 65.608 | 189 | 65 | 0 | 30 | 218 | 3 | 191 | 1.94e-87 | 257 |
| Msa0104430 | AT5G53160.1 | 73.504 | 117 | 29 | 1 | 34 | 148 | 1 | 117 | 1.39e-58 | 182 |
| Msa0104430 | AT2G38310.1 | 53.939 | 165 | 71 | 2 | 52 | 214 | 41 | 202 | 3.57e-54 | 172 |
| Msa0104430 | AT5G05440.1 | 51.899 | 158 | 71 | 3 | 48 | 203 | 43 | 197 | 2.69e-53 | 170 |
| Msa0104430 | AT2G40330.1 | 48.503 | 167 | 82 | 2 | 48 | 210 | 46 | 212 | 2.91e-53 | 171 |
| Msa0104430 | AT2G26040.1 | 47.619 | 168 | 83 | 3 | 50 | 213 | 22 | 188 | 2.68e-51 | 165 |
| Msa0104430 | AT4G17870.1 | 49.693 | 163 | 80 | 1 | 50 | 210 | 17 | 179 | 9.21e-49 | 158 |
| Msa0104430 | AT1G73000.1 | 41.573 | 178 | 92 | 3 | 42 | 208 | 30 | 206 | 9.42e-44 | 146 |
| Msa0104430 | AT5G45870.1 | 51.370 | 146 | 68 | 2 | 63 | 207 | 10 | 153 | 3.35e-39 | 133 |
| Msa0104430 | AT5G45860.1 | 51.316 | 152 | 72 | 2 | 60 | 210 | 7 | 157 | 3.36e-39 | 133 |
| Msa0104430 | AT5G46790.2 | 47.273 | 165 | 82 | 2 | 50 | 209 | 44 | 208 | 3.49e-39 | 135 |
| Msa0104430 | AT5G46790.1 | 47.273 | 165 | 82 | 2 | 50 | 209 | 44 | 208 | 3.49e-39 | 135 |
| Msa0104430 | AT4G18620.1 | 43.949 | 157 | 81 | 1 | 60 | 209 | 6 | 162 | 1.50e-34 | 121 |
Find 67 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCCATCAATAATTTC+AGG | 0.233126 | 1_3:+12329882 | None:intergenic |
| AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1_3:-12331552 | Msa0104430:CDS |
| GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1_3:-12330100 | Msa0104430:CDS |
| TGTTTGTTGCTTTCCTCATC+AGG | 0.320510 | 1_3:+12332014 | None:intergenic |
| AGGTATAGAAGAAGTATTAT+TGG | 0.335658 | 1_3:-12331593 | Msa0104430:CDS |
| AGAGAAGTTGATGTTAAATC+AGG | 0.349446 | 1_3:-12330178 | Msa0104430:CDS |
| CTCCACCCTGAAATTATTGA+TGG | 0.373274 | 1_3:-12329888 | Msa0104430:CDS |
| CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1_3:+12329821 | None:intergenic |
| AAGATAATCAATAGAGCAAA+TGG | 0.398173 | 1_3:+12329573 | None:intergenic |
| CTTTCTCTAGGTATGGTCCT+TGG | 0.413122 | 1_3:-12330284 | Msa0104430:intron |
| GAAGTAGCAGGTCTCGTCTT+TGG | 0.424937 | 1_3:+12329809 | None:intergenic |
| AGCTCCTATACCCGATCAAT+TGG | 0.432637 | 1_3:+12329708 | None:intergenic |
| TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1_3:-12330225 | Msa0104430:CDS |
| TCGTCTTTGGTGTTCCCCTC+GGG | 0.437338 | 1_3:+12329822 | None:intergenic |
| ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1_3:+12330229 | None:intergenic |
| ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1_3:-12330108 | Msa0104430:CDS |
| TTTGAGATTGCACTTAATAA+CGG | 0.454096 | 1_3:+12329779 | None:intergenic |
| TGAACCAATTGATCGGGTAT+AGG | 0.456918 | 1_3:-12329712 | Msa0104430:exon |
| GCAACAAACAAAGACACAAA+AGG | 0.460061 | 1_3:-12332001 | Msa0104430:CDS |
| TATTAGAGCACCGGTTCCTC+AGG | 0.468954 | 1_3:-12331456 | Msa0104430:intron |
| CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1_3:+12330151 | None:intergenic |
| GCCTTCCATCAATAATTTCA+GGG | 0.477985 | 1_3:+12329883 | None:intergenic |
| AGCACAAGGATAATTTGAAT+AGG | 0.478146 | 1_3:-12331613 | Msa0104430:CDS |
| TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1_3:-12330146 | Msa0104430:CDS |
| GAAATTATTGATGGAAGGCC+AGG | 0.481587 | 1_3:-12329879 | Msa0104430:CDS |
| AGGTATGGTCCTTGGTAAGA+AGG | 0.487057 | 1_3:-12330276 | Msa0104430:CDS |
| CCGTGGCAGCTATATGTCCT+TGG | 0.491660 | 1_3:+12329667 | None:intergenic |
| AGACATCACCGGCAGCAGCC+TGG | 0.504488 | 1_3:-12331512 | Msa0104430:CDS |
| AGAAGGGCAACCTGAGGAAC+CGG | 0.506005 | 1_3:+12331446 | None:intergenic |
| TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1_3:-12330080 | Msa0104430:intron |
| TGATGGAAGGCCAGGTACAC+TGG | 0.508216 | 1_3:-12329871 | Msa0104430:CDS |
| CCTCTTGGAGGCTTAGGAGA+CGG | 0.526626 | 1_3:-12329625 | Msa0104430:three_prime_UTR |
| GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1_3:+12331504 | None:intergenic |
| GATTCAATTACCAGTGTACC+TGG | 0.531597 | 1_3:+12329861 | None:intergenic |
| AGCAATTCCTTCTGAGACAT+CGG | 0.537766 | 1_3:+12329749 | None:intergenic |
| AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1_3:-12331546 | Msa0104430:CDS |
| CTCTTAGACTTCCGATCTCG+AGG | 0.539438 | 1_3:+12330197 | None:intergenic |
| TATAGGAGCTTATAATAAGA+AGG | 0.540592 | 1_3:-12329695 | Msa0104430:exon |
| CCGCACTGAACCAATTGATC+GGG | 0.542613 | 1_3:-12329718 | Msa0104430:CDS |
| GAACATGCTCATTGTCATCA+AGG | 0.542897 | 1_3:+12330119 | None:intergenic |
| AACGGCTTCAACGAAGTAGC+AGG | 0.543380 | 1_3:+12329797 | None:intergenic |
| TGTTAAGCATATTAGAGCAC+CGG | 0.544425 | 1_3:-12331465 | Msa0104430:CDS |
| ACCCTGAAATTATTGATGGA+AGG | 0.546775 | 1_3:-12329884 | Msa0104430:CDS |
| TATAGAAGAAGTATTATTGG+AGG | 0.548048 | 1_3:-12331590 | Msa0104430:CDS |
| ACCGCACTGAACCAATTGAT+CGG | 0.550074 | 1_3:-12329719 | Msa0104430:CDS |
| CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1_3:-12330097 | Msa0104430:CDS |
| TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1_3:-12330224 | Msa0104430:CDS |
| CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1_3:-12329919 | Msa0104430:intron |
| ATAATAAGAAGGTTCTTCCA+AGG | 0.568200 | 1_3:-12329684 | Msa0104430:three_prime_UTR |
| GAGAAGTTGATGTTAAATCA+GGG | 0.568344 | 1_3:-12330177 | Msa0104430:CDS |
| GTAAGGGGAAACCTCGAGAT+CGG | 0.576734 | 1_3:-12330208 | Msa0104430:CDS |
| CCAAGGACATATAGCTGCCA+CGG | 0.577818 | 1_3:-12329667 | Msa0104430:three_prime_UTR |
| GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1_3:-12330223 | Msa0104430:CDS |
| TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1_3:-12329756 | Msa0104430:CDS |
| GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1_3:+12331494 | None:intergenic |
| AAATCAGCTAATGCCTGATG+AGG | 0.601831 | 1_3:-12332027 | None:intergenic |
| TGGAGGCTTAGGAGACGGAC+TGG | 0.614611 | 1_3:-12329620 | Msa0104430:three_prime_UTR |
| GCAAATGGAATCAAATCACT+CGG | 0.630067 | 1_3:+12329588 | None:intergenic |
| AACCGCTGAAGCTTCATCCG+TGG | 0.646785 | 1_3:+12329650 | None:intergenic |
| TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1_3:-12329837 | Msa0104430:CDS |
| TGCCACGGATGAAGCTTCAG+CGG | 0.648630 | 1_3:-12329652 | Msa0104430:three_prime_UTR |
| CCGTCTCCTAAGCCTCCAAG+AGG | 0.653965 | 1_3:+12329625 | None:intergenic |
| AATATATTAGAAGACATCAC+CGG | 0.658365 | 1_3:-12331523 | Msa0104430:CDS |
| CTGATCGAACCTTCTTACCA+AGG | 0.687829 | 1_3:+12330267 | None:intergenic |
| TTCCATCAATAATTTCAGGG+TGG | 0.700428 | 1_3:+12329886 | None:intergenic |
| CCCGATCAATTGGTTCAGTG+CGG | 0.703627 | 1_3:+12329718 | None:intergenic |
| TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1_3:-12329836 | Msa0104430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTGTTTGTATGTT+TGG | + | chr1_3:12329662-12329681 | None:intergenic | 15.0% |
| !!! | ATTAATTCGTTTACTTTTTT+AGG | - | chr1_3:12329790-12329809 | Msa0104430:CDS | 15.0% |
| !! | ATAAATAACAAAAGAAAGAA+GGG | + | chr1_3:12330148-12330167 | None:intergenic | 15.0% |
| !! | TATAAATAACAAAAGAAAGA+AGG | + | chr1_3:12330149-12330168 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAACACTATTTA+AGG | + | chr1_3:12330328-12330347 | None:intergenic | 15.0% |
| !! | AAAAGAACAAAATATAGTTA+TGG | - | chr1_3:12330349-12330368 | Msa0104430:intron | 15.0% |
| !!! | TTTTTAAAGAAGAATCAATT+CGG | + | chr1_3:12331603-12331622 | None:intergenic | 15.0% |
| !! | TAATAATAGCACTATATAAG+TGG | - | chr1_3:12329617-12329636 | Msa0104430:three_prime_UTR | 20.0% |
| !!! | TTTGGTTTTAATTCAAAATG+GGG | + | chr1_3:12329644-12329663 | None:intergenic | 20.0% |
| !!! | GTTTGGTTTTAATTCAAAAT+GGG | + | chr1_3:12329645-12329664 | None:intergenic | 20.0% |
| !!! | TGTTTGGTTTTAATTCAAAA+TGG | + | chr1_3:12329646-12329665 | None:intergenic | 20.0% |
| !!! | GATAATAACAAATTTTGCTT+AGG | - | chr1_3:12329812-12329831 | Msa0104430:CDS | 20.0% |
| !! | TGGTTATGTAAATGTTAAAA+CGG | - | chr1_3:12330369-12330388 | Msa0104430:intron | 20.0% |
| !!! | TTCAATTTGATTTGAATTGT+TGG | - | chr1_3:12330555-12330574 | Msa0104430:intron | 20.0% |
| !!! | TTGCTTTATTACTCTTTAAA+GGG | - | chr1_3:12330835-12330854 | Msa0104430:intron | 20.0% |
| !! | TTTAAATAGAAAATGAAGAG+CGG | + | chr1_3:12330924-12330943 | None:intergenic | 20.0% |
| !! | CATTATACAAAAATATTGTG+AGG | + | chr1_3:12331229-12331248 | None:intergenic | 20.0% |
| !!! | TTATCATCACTTGTTATGTT+TGG | + | chr1_3:12329735-12329754 | None:intergenic | 25.0% |
| !!! | AGGTATAGAAGAAGTATTAT+TGG | - | chr1_3:12329982-12330001 | Msa0104430:intron | 25.0% |
| !!! | TATAGAAGAAGTATTATTGG+AGG | - | chr1_3:12329985-12330004 | Msa0104430:intron | 25.0% |
| ! | TAAAAATGAATGGAATTGGA+AGG | - | chr1_3:12330010-12330029 | Msa0104430:intron | 25.0% |
| ! | AATTGGAAGGTTTAGTAATA+TGG | - | chr1_3:12330023-12330042 | Msa0104430:intron | 25.0% |
| ! | AATATATTAGAAGACATCAC+CGG | - | chr1_3:12330052-12330071 | Msa0104430:intron | 25.0% |
| ! | TTGTGTTAGATATACAGTTA+TGG | - | chr1_3:12330268-12330287 | Msa0104430:CDS | 25.0% |
| ! | GTAATTTGAGAAAACAAAAG+TGG | - | chr1_3:12330458-12330477 | Msa0104430:intron | 25.0% |
| !!! | GAATGTTTTGATGATGTTTT+TGG | - | chr1_3:12330594-12330613 | Msa0104430:intron | 25.0% |
| !!! | GATGTTTTTGGTCTATTTTA+TGG | - | chr1_3:12330606-12330625 | Msa0104430:intron | 25.0% |
| !! | ACTATTAATTTTCTCGACAA+CGG | + | chr1_3:12330806-12330825 | None:intergenic | 25.0% |
| ! | TTGTCGAGAAAATTAATAGT+TGG | - | chr1_3:12330806-12330825 | Msa0104430:intron | 25.0% |
| ! | TGTCGAGAAAATTAATAGTT+GGG | - | chr1_3:12330807-12330826 | Msa0104430:intron | 25.0% |
| !! | CTTGCTTTATTACTCTTTAA+AGG | - | chr1_3:12330834-12330853 | Msa0104430:intron | 25.0% |
| ! | TAATTGGTATGAAATTTACG+GGG | + | chr1_3:12330901-12330920 | None:intergenic | 25.0% |
| ! | GTAATTGGTATGAAATTTAC+GGG | + | chr1_3:12330902-12330921 | None:intergenic | 25.0% |
| ! | GGTAATTGGTATGAAATTTA+CGG | + | chr1_3:12330903-12330922 | None:intergenic | 25.0% |
| !!! | ACAATCTATTTTTGCATCTT+TGG | - | chr1_3:12330956-12330975 | Msa0104430:intron | 25.0% |
| ! | TGCTATTGAATAAAGAGTTT+CGG | - | chr1_3:12331196-12331215 | Msa0104430:intron | 25.0% |
| ! | TCCTTAAAATGATAACTCTT+TGG | - | chr1_3:12331631-12331650 | Msa0104430:intron | 25.0% |
| !! | ACCAAAGAGTTATCATTTTA+AGG | + | chr1_3:12331635-12331654 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATAA+CGG | + | chr1_3:12331799-12331818 | None:intergenic | 25.0% |
| ! | TATAGGAGCTTATAATAAGA+AGG | - | chr1_3:12331880-12331899 | Msa0104430:intron | 25.0% |
| ! | AAGATAATCAATAGAGCAAA+TGG | + | chr1_3:12332005-12332024 | None:intergenic | 25.0% |
| GAATATGCAAAGTATGTGAT+TGG | + | chr1_3:12329877-12329896 | None:intergenic | 30.0% | |
| CTTTGCATATTCTTCTTCTT+TGG | - | chr1_3:12329885-12329904 | Msa0104430:CDS | 30.0% | |
| AACAAAGAAAACAAAGTGTG+TGG | + | chr1_3:12329917-12329936 | None:intergenic | 30.0% | |
| !!! | TTATGATTTTTTGCAGCACA+AGG | - | chr1_3:12329948-12329967 | Msa0104430:intron | 30.0% |
| AGCACAAGGATAATTTGAAT+AGG | - | chr1_3:12329962-12329981 | Msa0104430:intron | 30.0% | |
| ! | ATTGGAGGTGTAAAAATGAA+TGG | - | chr1_3:12330000-12330019 | Msa0104430:intron | 30.0% |
| GGTGTAAAAATGAATGGAAT+TGG | - | chr1_3:12330006-12330025 | Msa0104430:intron | 30.0% | |
| AAGGTTTAGTAATATGGAGA+TGG | - | chr1_3:12330029-12330048 | Msa0104430:intron | 30.0% | |
| !! | TGTGTGAAGATTTTTGTTGT+TGG | - | chr1_3:12330226-12330245 | Msa0104430:CDS | 30.0% |
| AGATATACAGTTATGGTTGT+TGG | - | chr1_3:12330275-12330294 | Msa0104430:CDS | 30.0% | |
| ! | TAAAACGGTTACCTGATTTT+TGG | - | chr1_3:12330384-12330403 | Msa0104430:intron | 30.0% |
| TTAACTCTTTGCCAAAAATC+AGG | + | chr1_3:12330398-12330417 | None:intergenic | 30.0% | |
| !!! | TGCTACTATCTTTTAGGTTT+TGG | - | chr1_3:12330662-12330681 | Msa0104430:intron | 30.0% |
| !!! | ATGCATTTTTAGCACATCAA+AGG | - | chr1_3:12331044-12331063 | Msa0104430:intron | 30.0% |
| GAAAAAATCGAACTGAATTG+AGG | + | chr1_3:12331162-12331181 | None:intergenic | 30.0% | |
| AAATAAACATCACACAACGA+GGG | + | chr1_3:12331255-12331274 | None:intergenic | 30.0% | |
| TAAATAAACATCACACAACG+AGG | + | chr1_3:12331256-12331275 | None:intergenic | 30.0% | |
| !! | ACAAATGGTTTGTACTTTTG+TGG | + | chr1_3:12331334-12331353 | None:intergenic | 30.0% |
| !! | AGAGAAGTTGATGTTAAATC+AGG | - | chr1_3:12331397-12331416 | Msa0104430:intron | 30.0% |
| !! | GAGAAGTTGATGTTAAATCA+GGG | - | chr1_3:12331398-12331417 | Msa0104430:intron | 30.0% |
| TACTACAAGTACAGAAAGAT+TGG | - | chr1_3:12331429-12331448 | Msa0104430:intron | 30.0% | |
| !!! | AAGTTTCTGGTCATTTTGTA+AGG | + | chr1_3:12331538-12331557 | None:intergenic | 30.0% |
| ! | ATAAGATTTGAAGCAAACAG+AGG | + | chr1_3:12331568-12331587 | None:intergenic | 30.0% |
| ! | ACTGGTAATTGAATCTTTTG+TGG | - | chr1_3:12331722-12331741 | Msa0104430:intron | 30.0% |
| ATAATAAGAAGGTTCTTCCA+AGG | - | chr1_3:12331891-12331910 | Msa0104430:intron | 30.0% | |
| GCAACAAACAAAGACACAAA+AGG | - | chr1_3:12329574-12329593 | Msa0104430:three_prime_UTR | 35.0% | |
| TAAGTAGTTTCCATGATCCA+TGG | - | chr1_3:12329835-12329854 | Msa0104430:CDS | 35.0% | |
| TGTTAAGCATATTAGAGCAC+CGG | - | chr1_3:12330110-12330129 | Msa0104430:CDS | 35.0% | |
| !!! | GATTTTTGTTGTTGGATGCA+TGG | - | chr1_3:12330234-12330253 | Msa0104430:CDS | 35.0% |
| TGTTTGACATCAACATGAGT+CGG | - | chr1_3:12330518-12330537 | Msa0104430:intron | 35.0% | |
| ! | CTGATCTGCTACTATCTTTT+AGG | - | chr1_3:12330656-12330675 | Msa0104430:intron | 35.0% |
| AAGCAAGCAATTTCCTTTAG+AGG | - | chr1_3:12330761-12330780 | Msa0104430:intron | 35.0% | |
| AGCAAGCAATTTCCTTTAGA+GGG | - | chr1_3:12330762-12330781 | Msa0104430:intron | 35.0% | |
| TTATCTGCTTTACCCTCTAA+AGG | + | chr1_3:12330777-12330796 | None:intergenic | 35.0% | |
| AGAAAATGAAGAGCGGTAAT+TGG | + | chr1_3:12330917-12330936 | None:intergenic | 35.0% | |
| TGGCATGTGTAAAAATCTTG+TGG | - | chr1_3:12330976-12330995 | Msa0104430:intron | 35.0% | |
| CATGTGTAAAAATCTTGTGG+TGG | - | chr1_3:12330979-12330998 | Msa0104430:intron | 35.0% | |
| ATTGAGGTTCGCTTTGTAAT+TGG | + | chr1_3:12331146-12331165 | None:intergenic | 35.0% | |
| ! | AGATTTGCTTTCTCTAGGTA+TGG | - | chr1_3:12331284-12331303 | Msa0104430:intron | 35.0% |
| ACAACACATCTGCTTACAAA+TGG | + | chr1_3:12331349-12331368 | None:intergenic | 35.0% | |
| TTGTAAGCAGATGTGTTGTA+AGG | - | chr1_3:12331350-12331369 | Msa0104430:intron | 35.0% | |
| TGTAAGCAGATGTGTTGTAA+GGG | - | chr1_3:12331351-12331370 | Msa0104430:intron | 35.0% | |
| CAGAGGAACAAAAAAGTTTC+TGG | + | chr1_3:12331551-12331570 | None:intergenic | 35.0% | |
| CATCTTTCAGAACTATTCGT+CGG | - | chr1_3:12331656-12331675 | Msa0104430:intron | 35.0% | |
| TTCCATCAATAATTTCAGGG+TGG | + | chr1_3:12331692-12331711 | None:intergenic | 35.0% | |
| ACCCTGAAATTATTGATGGA+AGG | - | chr1_3:12331691-12331710 | Msa0104430:intron | 35.0% | |
| GCCTTCCATCAATAATTTCA+GGG | + | chr1_3:12331695-12331714 | None:intergenic | 35.0% | |
| ! | GGTAATTGAATCTTTTGTGG+TGG | - | chr1_3:12331725-12331744 | Msa0104430:intron | 35.0% |
| GCAAATGGAATCAAATCACT+CGG | + | chr1_3:12331990-12332009 | None:intergenic | 35.0% | |
| !! | TGTTTGTTGCTTTCCTCATC+AGG | + | chr1_3:12329564-12329583 | None:intergenic | 40.0% |
| TGTTGTTGGATGCATGGTTA+TGG | - | chr1_3:12330240-12330259 | Msa0104430:CDS | 40.0% | |
| CAGTTATGGTTGTTGGAACT+TGG | - | chr1_3:12330282-12330301 | Msa0104430:intron | 40.0% | |
| GAGTATAACTCATCAGTGTC+GGG | + | chr1_3:12330438-12330457 | None:intergenic | 40.0% | |
| CGAGTATAACTCATCAGTGT+CGG | + | chr1_3:12330439-12330458 | None:intergenic | 40.0% | |
| CATCAACATGAGTCGGATAT+TGG | - | chr1_3:12330525-12330544 | Msa0104430:intron | 40.0% | |
| TTTATGGTTGACCTGCTTTG+TGG | - | chr1_3:12330622-12330641 | Msa0104430:intron | 40.0% | |
| ATCACATTGTACCACAAAGC+AGG | + | chr1_3:12330636-12330655 | None:intergenic | 40.0% | |
| CATCAAAGGTTCGATCAGAT+TGG | - | chr1_3:12331058-12331077 | Msa0104430:intron | 40.0% | |
| ! | AAGGTTCGATCAGATTGGTT+TGG | - | chr1_3:12331063-12331082 | Msa0104430:intron | 40.0% |
| GTAAGCAGATGTGTTGTAAG+GGG | - | chr1_3:12331352-12331371 | Msa0104430:intron | 40.0% | |
| CTTTCTGTACTTGTAGTAGC+AGG | + | chr1_3:12331427-12331446 | None:intergenic | 40.0% | |
| GAACATGCTCATTGTCATCA+AGG | + | chr1_3:12331459-12331478 | None:intergenic | 40.0% | |
| GTTCTCAGCATCAGGATTAT+TGG | - | chr1_3:12331475-12331494 | Msa0104430:CDS | 40.0% | |
| CTCCACCCTGAAATTATTGA+TGG | - | chr1_3:12331687-12331706 | Msa0104430:intron | 40.0% | |
| GGCCTTCCATCAATAATTTC+AGG | + | chr1_3:12331696-12331715 | None:intergenic | 40.0% | |
| GAAATTATTGATGGAAGGCC+AGG | - | chr1_3:12331696-12331715 | Msa0104430:intron | 40.0% | |
| GATTCAATTACCAGTGTACC+TGG | + | chr1_3:12331717-12331736 | None:intergenic | 40.0% | |
| !! | AGCAATTCCTTCTGAGACAT+CGG | + | chr1_3:12331829-12331848 | None:intergenic | 40.0% |
| TGAACCAATTGATCGGGTAT+AGG | - | chr1_3:12331863-12331882 | Msa0104430:intron | 40.0% | |
| GTAGTTTCCATGATCCATGG+TGG | - | chr1_3:12329838-12329857 | Msa0104430:CDS | 45.0% | |
| ! | GAAGCACACTGATTATGTCC+AGG | + | chr1_3:12330084-12330103 | None:intergenic | 45.0% |
| AAAGAAAGAAGGGCAACCTG+AGG | + | chr1_3:12330138-12330157 | None:intergenic | 45.0% | |
| GATCCTTGTGAAGCATAGTG+TGG | - | chr1_3:12330718-12330737 | Msa0104430:intron | 45.0% | |
| TGACCACACTATGCTTCACA+AGG | + | chr1_3:12330724-12330743 | None:intergenic | 45.0% | |
| ! | CGCGTAGATTTGCTTTCTCT+AGG | - | chr1_3:12331279-12331298 | Msa0104430:intron | 45.0% |
| CTTTCTCTAGGTATGGTCCT+TGG | - | chr1_3:12331291-12331310 | Msa0104430:intron | 45.0% | |
| AGGTATGGTCCTTGGTAAGA+AGG | - | chr1_3:12331299-12331318 | Msa0104430:intron | 45.0% | |
| CTGATCGAACCTTCTTACCA+AGG | + | chr1_3:12331311-12331330 | None:intergenic | 45.0% | |
| ATGAGCATGTTCTCAGCATC+AGG | - | chr1_3:12331467-12331486 | Msa0104430:CDS | 45.0% | |
| CTCAGCATCAGGATTATTGG+TGG | - | chr1_3:12331478-12331497 | Msa0104430:CDS | 45.0% | |
| !! | TGGTGGTGATCATCGACTTA+CGG | - | chr1_3:12331495-12331514 | Msa0104430:CDS | 45.0% |
| !!! | TTTTGTGGTGGATATACCCG+AGG | - | chr1_3:12331737-12331756 | Msa0104430:intron | 45.0% |
| !! | TTTGTGGTGGATATACCCGA+GGG | - | chr1_3:12331738-12331757 | Msa0104430:intron | 45.0% |
| ACCGCACTGAACCAATTGAT+CGG | - | chr1_3:12331856-12331875 | Msa0104430:intron | 45.0% | |
| AGCTCCTATACCCGATCAAT+TGG | + | chr1_3:12331870-12331889 | None:intergenic | 45.0% | |
| !!! | TATTCTTATTTTTTATTTTA+TGG | - | chr1_3:12330184-12330203 | Msa0104430:CDS | 5.0% |
| GATATTCAGAGTCGCCACCA+TGG | + | chr1_3:12329855-12329874 | None:intergenic | 50.0% | |
| !! | TATTAGAGCACCGGTTCCTC+AGG | - | chr1_3:12330119-12330138 | Msa0104430:CDS | 50.0% |
| GTAAGGGGAAACCTCGAGAT+CGG | - | chr1_3:12331367-12331386 | Msa0104430:intron | 50.0% | |
| CTCTTAGACTTCCGATCTCG+AGG | + | chr1_3:12331381-12331400 | None:intergenic | 50.0% | |
| !! | TTGTGGTGGATATACCCGAG+GGG | - | chr1_3:12331739-12331758 | Msa0104430:intron | 50.0% |
| GAAGTAGCAGGTCTCGTCTT+TGG | + | chr1_3:12331769-12331788 | None:intergenic | 50.0% | |
| AACGGCTTCAACGAAGTAGC+AGG | + | chr1_3:12331781-12331800 | None:intergenic | 50.0% | |
| TCACTTGCCGATGTCTCAGA+AGG | - | chr1_3:12331819-12331838 | Msa0104430:intron | 50.0% | |
| ! | CCCGATCAATTGGTTCAGTG+CGG | + | chr1_3:12331860-12331879 | None:intergenic | 50.0% |
| CCGCACTGAACCAATTGATC+GGG | - | chr1_3:12331857-12331876 | Msa0104430:intron | 50.0% | |
| CCAAGGACATATAGCTGCCA+CGG | - | chr1_3:12331908-12331927 | Msa0104430:intron | 50.0% | |
| ! | AGCTTCAGCGGTTTTCCTCT+TGG | - | chr1_3:12331935-12331954 | Msa0104430:intron | 50.0% |
| ! | TTCAGCGGTTTTCCTCTTGG+AGG | - | chr1_3:12331938-12331957 | Msa0104430:intron | 50.0% |
| ! | GGTTTTCCTCTTGGAGGCTT+AGG | - | chr1_3:12331944-12331963 | Msa0104430:intron | 50.0% |
| AGAGTCGCCACCATGGATCA+TGG | + | chr1_3:12329848-12329867 | None:intergenic | 55.0% | |
| GATTATGTCCAGGCTGCTGC+CGG | + | chr1_3:12330074-12330093 | None:intergenic | 55.0% | |
| AGAAGGGCAACCTGAGGAAC+CGG | + | chr1_3:12330132-12330151 | None:intergenic | 55.0% | |
| TGATGGAAGGCCAGGTACAC+TGG | - | chr1_3:12331704-12331723 | Msa0104430:intron | 55.0% | |
| !! | TCGTCTTTGGTGTTCCCCTC+GGG | + | chr1_3:12331756-12331775 | None:intergenic | 55.0% |
| !! | CTCGTCTTTGGTGTTCCCCT+CGG | + | chr1_3:12331757-12331776 | None:intergenic | 55.0% |
| CCGTGGCAGCTATATGTCCT+TGG | + | chr1_3:12331911-12331930 | None:intergenic | 55.0% | |
| TGCCACGGATGAAGCTTCAG+CGG | - | chr1_3:12331923-12331942 | Msa0104430:intron | 55.0% | |
| AACCGCTGAAGCTTCATCCG+TGG | + | chr1_3:12331928-12331947 | None:intergenic | 55.0% | |
| CCTCTTGGAGGCTTAGGAGA+CGG | - | chr1_3:12331950-12331969 | Msa0104430:intron | 55.0% | |
| CCGTCTCCTAAGCCTCCAAG+AGG | + | chr1_3:12331953-12331972 | None:intergenic | 60.0% | |
| TGGAGGCTTAGGAGACGGAC+TGG | - | chr1_3:12331955-12331974 | Msa0104430:intron | 60.0% | |
| AGACATCACCGGCAGCAGCC+TGG | - | chr1_3:12330063-12330082 | Msa0104430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12329558 | 12332039 | 12329558 | ID=Msa0104430;Name=Msa0104430 |
| chr1_3 | mRNA | 12329558 | 12332039 | 12329558 | ID=Msa0104430-mRNA-1;Parent=Msa0104430;Name=Msa0104430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.5|0.75|1|1|4|155|221 |
| chr1_3 | exon | 12329558 | 12329931 | 12329558 | ID=Msa0104430-mRNA-1:exon:4929;Parent=Msa0104430-mRNA-1 |
| chr1_3 | exon | 12330081 | 12330296 | 12330081 | ID=Msa0104430-mRNA-1:exon:4928;Parent=Msa0104430-mRNA-1 |
| chr1_3 | exon | 12331457 | 12331633 | 12331457 | ID=Msa0104430-mRNA-1:exon:4927;Parent=Msa0104430-mRNA-1 |
| chr1_3 | exon | 12331986 | 12332039 | 12331986 | ID=Msa0104430-mRNA-1:exon:4926;Parent=Msa0104430-mRNA-1 |
| chr1_3 | CDS | 12331986 | 12332039 | 12331986 | ID=Msa0104430-mRNA-1:cds;Parent=Msa0104430-mRNA-1 |
| chr1_3 | CDS | 12331457 | 12331633 | 12331457 | ID=Msa0104430-mRNA-1:cds;Parent=Msa0104430-mRNA-1 |
| chr1_3 | CDS | 12330081 | 12330296 | 12330081 | ID=Msa0104430-mRNA-1:cds;Parent=Msa0104430-mRNA-1 |
| chr1_3 | CDS | 12329713 | 12329931 | 12329713 | ID=Msa0104430-mRNA-1:cds;Parent=Msa0104430-mRNA-1 |
| chr1_3 | three_prime_UTR | 12329558 | 12329712 | 12329558 | ID=Msa0104430-mRNA-1:three_prime_utr;Parent=Msa0104430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
