Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059580 | XP_013466364.1 | 96.316 | 190 | 3 | 1 | 64 | 249 | 1 | 190 | 3.36e-130 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059580 | sp|Q9FGM1|PYL8_ARATH | 76.216 | 185 | 42 | 1 | 62 | 244 | 1 | 185 | 1.09e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059580 | A0A072VQL7 | 96.316 | 190 | 3 | 1 | 64 | 249 | 1 | 190 | 1.60e-130 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009810 | Msa0059580 | 0.829846 | 4.095856e-55 | -8.615850e-47 |
| Msa0009880 | Msa0059580 | 0.826154 | 3.170170e-54 | -8.615850e-47 |
| Msa0015930 | Msa0059580 | 0.803895 | 2.802808e-49 | -8.615850e-47 |
| Msa0059580 | Msa0104430 | 0.959425 | 1.991546e-117 | -8.615850e-47 |
| Msa0059580 | Msa0116520 | 0.801825 | 7.500115e-49 | -8.615850e-47 |
| Msa0059580 | Msa0141990 | 0.808497 | 3.009062e-50 | -8.615850e-47 |
| Msa0059580 | Msa0550150 | 0.810885 | 9.225438e-51 | -8.615850e-47 |
| Msa0059580 | Msa0605650 | 0.802888 | 4.529903e-49 | -8.615850e-47 |
| Msa0059580 | Msa0867730 | 0.830709 | 2.520682e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059580 | MtrunA17_Chr1g0158871 | 96.316 | 190 | 3 | 1 | 64 | 249 | 1 | 190 | 3.09e-134 | 376 |
| Msa0059580 | MtrunA17_Chr3g0126471 | 87.368 | 190 | 21 | 1 | 63 | 249 | 3 | 192 | 1.02e-122 | 347 |
| Msa0059580 | MtrunA17_Chr8g0347191 | 74.302 | 179 | 46 | 0 | 69 | 247 | 64 | 242 | 4.17e-101 | 294 |
| Msa0059580 | MtrunA17_Chr3g0114121 | 50.575 | 174 | 81 | 4 | 73 | 244 | 61 | 231 | 1.40e-57 | 183 |
| Msa0059580 | MtrunA17_Chr7g0243271 | 56.213 | 169 | 68 | 3 | 76 | 238 | 11 | 179 | 2.55e-55 | 176 |
| Msa0059580 | MtrunA17_Chr5g0437611 | 51.534 | 163 | 73 | 2 | 76 | 235 | 44 | 203 | 5.63e-55 | 175 |
| Msa0059580 | MtrunA17_Chr4g0005501 | 49.689 | 161 | 80 | 1 | 78 | 237 | 49 | 209 | 3.39e-53 | 171 |
| Msa0059580 | MtrunA17_Chr1g0151661 | 49.686 | 159 | 77 | 2 | 78 | 234 | 39 | 196 | 1.16e-51 | 167 |
| Msa0059580 | MtrunA17_Chr5g0411391 | 49.398 | 166 | 77 | 3 | 77 | 236 | 43 | 207 | 1.81e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059580 | AT5G53160.2 | 76.216 | 185 | 42 | 1 | 62 | 244 | 1 | 185 | 1.11e-103 | 299 |
| Msa0059580 | AT1G01360.1 | 72.778 | 180 | 48 | 1 | 66 | 244 | 8 | 187 | 1.50e-95 | 278 |
| Msa0059580 | AT4G27920.1 | 66.304 | 184 | 60 | 2 | 64 | 246 | 1 | 183 | 6.45e-89 | 261 |
| Msa0059580 | AT4G01026.1 | 71.598 | 169 | 48 | 0 | 78 | 246 | 23 | 191 | 1.23e-86 | 256 |
| Msa0059580 | AT5G53160.1 | 73.504 | 117 | 29 | 1 | 62 | 176 | 1 | 117 | 2.17e-58 | 182 |
| Msa0059580 | AT2G38310.1 | 53.939 | 165 | 71 | 2 | 80 | 242 | 41 | 202 | 1.37e-53 | 172 |
| Msa0059580 | AT5G05440.1 | 51.899 | 158 | 71 | 3 | 76 | 231 | 43 | 197 | 9.95e-53 | 170 |
| Msa0059580 | AT2G40330.1 | 48.503 | 167 | 82 | 2 | 76 | 238 | 46 | 212 | 1.15e-52 | 170 |
| Msa0059580 | AT2G26040.1 | 47.619 | 168 | 83 | 3 | 78 | 241 | 22 | 188 | 4.21e-51 | 165 |
| Msa0059580 | AT4G17870.1 | 49.693 | 163 | 80 | 1 | 78 | 238 | 17 | 179 | 1.96e-48 | 158 |
| Msa0059580 | AT1G73000.1 | 41.573 | 178 | 92 | 3 | 70 | 236 | 30 | 206 | 1.25e-43 | 147 |
| Msa0059580 | AT5G46790.2 | 47.273 | 165 | 82 | 2 | 78 | 237 | 44 | 208 | 8.48e-39 | 135 |
| Msa0059580 | AT5G46790.1 | 47.273 | 165 | 82 | 2 | 78 | 237 | 44 | 208 | 8.48e-39 | 135 |
| Msa0059580 | AT5G45870.1 | 51.370 | 146 | 68 | 2 | 91 | 235 | 10 | 153 | 8.62e-39 | 132 |
| Msa0059580 | AT5G45860.1 | 51.316 | 152 | 72 | 2 | 88 | 238 | 7 | 157 | 9.86e-39 | 132 |
| Msa0059580 | AT4G18620.1 | 43.949 | 157 | 81 | 1 | 88 | 237 | 6 | 162 | 2.31e-34 | 121 |
Find 75 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCCATCAATAATTTC+AGG | 0.233126 | 1_2:-16768080 | None:intergenic |
| AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1_2:+16766311 | Msa0059580:CDS |
| GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1_2:+16767862 | Msa0059580:CDS |
| AGGTGTAGAAGAAGTGTTAT+TGG | 0.295134 | 1_2:+16766270 | Msa0059580:CDS |
| AGAGAAGTTGATGTTAAATC+AGG | 0.349446 | 1_2:+16767784 | Msa0059580:CDS |
| GCTGCTTTGAAGTCTGAGTC+TGG | 0.364518 | 1_2:+16764130 | Msa0059580:CDS |
| TTTCTCGGGAAAGACTATAA+AGG | 0.370442 | 1_2:-16764053 | None:intergenic |
| CTCCACCCTGAAATTATTGA+TGG | 0.373274 | 1_2:+16768074 | Msa0059580:CDS |
| CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1_2:-16768141 | None:intergenic |
| AAGATAATCAATAGAGCAAA+TGG | 0.398173 | 1_2:-16768389 | None:intergenic |
| CTTTCTCTAGGTATGGTCCT+TGG | 0.413122 | 1_2:+16767678 | Msa0059580:intron |
| GAAGTAGCAGGTCTCGTCTT+TGG | 0.424937 | 1_2:-16768153 | None:intergenic |
| AGCTCCTATACCCGATCAAT+TGG | 0.432637 | 1_2:-16768254 | None:intergenic |
| TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1_2:+16767737 | Msa0059580:CDS |
| TCGTCTTTGGTGTTCCCCTC+GGG | 0.437338 | 1_2:-16768140 | None:intergenic |
| ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1_2:-16767733 | None:intergenic |
| ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1_2:+16767854 | Msa0059580:CDS |
| TTTGAGATTGCACTTAATAA+CGG | 0.454096 | 1_2:-16768183 | None:intergenic |
| TGAACCAATTGATCGGGTAT+AGG | 0.456918 | 1_2:+16768250 | Msa0059580:CDS |
| GTCTGGGGACGTAGTACAAC+AGG | 0.458712 | 1_2:+16764147 | Msa0059580:CDS |
| CTGCTTTGAAGTCTGAGTCT+GGG | 0.462170 | 1_2:+16764131 | Msa0059580:CDS |
| TATTAGAGCACCGGTTCCTC+AGG | 0.468954 | 1_2:+16766407 | Msa0059580:CDS |
| CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1_2:-16767811 | None:intergenic |
| GCCTTCCATCAATAATTTCA+GGG | 0.477985 | 1_2:-16768079 | None:intergenic |
| AGAAGGGCAACCTGAGGAAC+CGG | 0.478132 | 1_2:-16766417 | None:intergenic |
| TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1_2:+16767816 | Msa0059580:CDS |
| GAAATTATTGATGGAAGGCC+AGG | 0.481587 | 1_2:+16768083 | Msa0059580:CDS |
| AGGTATGGTCCTTGGTAAGA+AGG | 0.487057 | 1_2:+16767686 | Msa0059580:intron |
| AGCACAAGGATAATTTGAAT+AGG | 0.488078 | 1_2:+16766250 | Msa0059580:intron |
| CCGTGGCAGCTATATGTCCT+TGG | 0.491660 | 1_2:-16768295 | None:intergenic |
| AGACATCACCGGCAGCAGCC+TGG | 0.503570 | 1_2:+16766351 | Msa0059580:CDS |
| AAACTTGCTTGTTCCAGTAG+TGG | 0.506266 | 1_2:+16764097 | Msa0059580:CDS |
| TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1_2:+16767882 | Msa0059580:CDS |
| TGATGGAAGGCCAGGTACAC+TGG | 0.508216 | 1_2:+16768091 | Msa0059580:CDS |
| CCTCTTGGAGGCTTAGGAGA+CGG | 0.526626 | 1_2:+16768337 | Msa0059580:three_prime_UTR |
| TGTAGAAGAAGTGTTATTGG+AGG | 0.526759 | 1_2:+16766273 | Msa0059580:CDS |
| GGACGTAGTACAACAGGATA+AGG | 0.530187 | 1_2:+16764153 | Msa0059580:CDS |
| GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1_2:-16766359 | None:intergenic |
| GATTCAATTACCAGTGTACC+TGG | 0.531597 | 1_2:-16768101 | None:intergenic |
| CAGGATAAGGTTCCTCAGAC+AGG | 0.535481 | 1_2:+16764166 | Msa0059580:CDS |
| AGCAATTCCTTCTGAGACAT+CGG | 0.537766 | 1_2:-16768213 | None:intergenic |
| AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1_2:+16766317 | Msa0059580:CDS |
| CTCTTAGACTTCCGATCTCG+AGG | 0.539438 | 1_2:-16767765 | None:intergenic |
| TATAGGAGCTTATAATAAGA+AGG | 0.540592 | 1_2:+16768267 | Msa0059580:exon |
| CCGCACTGAACCAATTGATC+GGG | 0.542613 | 1_2:+16768244 | Msa0059580:CDS |
| GAACATGCTCATTGTCATCA+AGG | 0.542897 | 1_2:-16767843 | None:intergenic |
| AACGGCTTCAACGAAGTAGC+AGG | 0.543380 | 1_2:-16768165 | None:intergenic |
| TGTTAAGCATATTAGAGCAC+CGG | 0.544425 | 1_2:+16766398 | Msa0059580:CDS |
| ACCCTGAAATTATTGATGGA+AGG | 0.546775 | 1_2:+16768078 | Msa0059580:CDS |
| ACCGCACTGAACCAATTGAT+CGG | 0.550074 | 1_2:+16768243 | Msa0059580:CDS |
| CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1_2:+16767865 | Msa0059580:CDS |
| TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1_2:+16767738 | Msa0059580:CDS |
| AGCATCGCATATTCCACTAC+TGG | 0.557999 | 1_2:-16764110 | None:intergenic |
| CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1_2:+16768043 | Msa0059580:intron |
| ATAATAAGAAGGTTCTTCCA+AGG | 0.568200 | 1_2:+16768278 | Msa0059580:three_prime_UTR |
| GAGAAGTTGATGTTAAATCA+GGG | 0.568344 | 1_2:+16767785 | Msa0059580:CDS |
| GTAAGGGGAAACCTCGAGAT+CGG | 0.576734 | 1_2:+16767754 | Msa0059580:CDS |
| CCAAGGACATATAGCTGCCA+CGG | 0.577818 | 1_2:+16768295 | Msa0059580:three_prime_UTR |
| GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1_2:+16767739 | Msa0059580:CDS |
| TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1_2:+16768206 | Msa0059580:CDS |
| GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1_2:-16766369 | None:intergenic |
| TAAGGTTCCTCAGACAGGAC+AGG | 0.598501 | 1_2:+16764171 | Msa0059580:CDS |
| TGGAGGCTTAGGAGACGGAC+TGG | 0.614611 | 1_2:+16768342 | Msa0059580:three_prime_UTR |
| TGCTTTGAAGTCTGAGTCTG+GGG | 0.617350 | 1_2:+16764132 | Msa0059580:CDS |
| AATATATAAGAAGACATCAC+CGG | 0.628118 | 1_2:+16766340 | Msa0059580:CDS |
| TACACCACCTGTCCTGTCTG+AGG | 0.629905 | 1_2:-16764178 | None:intergenic |
| GCAAATGGAATCAAATCACT+CGG | 0.630067 | 1_2:-16768374 | None:intergenic |
| AACCGCTGAAGCTTCATCCG+TGG | 0.646785 | 1_2:-16768312 | None:intergenic |
| TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1_2:+16768125 | Msa0059580:CDS |
| TGCCACGGATGAAGCTTCAG+CGG | 0.648630 | 1_2:+16768310 | Msa0059580:three_prime_UTR |
| CCGTCTCCTAAGCCTCCAAG+AGG | 0.653965 | 1_2:-16768337 | None:intergenic |
| CTGATCGAACCTTCTTACCA+AGG | 0.687829 | 1_2:-16767695 | None:intergenic |
| TTCCATCAATAATTTCAGGG+TGG | 0.700428 | 1_2:-16768076 | None:intergenic |
| CCCGATCAATTGGTTCAGTG+CGG | 0.703627 | 1_2:-16768244 | None:intergenic |
| TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1_2:+16768126 | Msa0059580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTATTTTTATTTTA+TGG | + | chr1_2:16766479-16766498 | Msa0059580:intron | 0.0% |
| !!! | TCTATTTTTATATTATATGT+GGG | - | chr1_2:16764313-16764332 | None:intergenic | 10.0% |
| !!! | ATCTATTTTTATATTATATG+TGG | - | chr1_2:16764314-16764333 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACATCTTAT+TGG | - | chr1_2:16765056-16765075 | None:intergenic | 10.0% |
| !!! | ATAAGATGTTTTTTTTAATA+AGG | + | chr1_2:16765087-16765106 | Msa0059580:intron | 10.0% |
| !! | AAAAAAACAAAAATAAAGAA+GGG | - | chr1_2:16766436-16766455 | None:intergenic | 10.0% |
| !! | AAAAAAAACAAAAATAAAGA+AGG | - | chr1_2:16766437-16766456 | None:intergenic | 10.0% |
| !! | TTATAAAAAAACACTATTTA+AGG | - | chr1_2:16766647-16766666 | None:intergenic | 10.0% |
| !! | AAATAAATAAAAAATAGTGA+TGG | + | chr1_2:16766665-16766684 | Msa0059580:intron | 10.0% |
| !!! | CGTTTTTTCAATTTAATTTT+TGG | - | chr1_2:16765146-16765165 | None:intergenic | 15.0% |
| !!! | TACTTTTTCTTTGTAAATTA+TGG | + | chr1_2:16765489-16765508 | Msa0059580:intron | 15.0% |
| !! | TAAAATATTGTTTGTATGTT+TGG | - | chr1_2:16765951-16765970 | None:intergenic | 15.0% |
| !!! | ATTAATTCGTTTACTTTTTT+AGG | + | chr1_2:16766079-16766098 | Msa0059580:intron | 15.0% |
| !!! | TTTTTAAAGAAGAATCAATT+CGG | - | chr1_2:16767990-16768009 | None:intergenic | 15.0% |
| !! | ACAACAATATAAAATGTCAA+TGG | + | chr1_2:16764440-16764459 | Msa0059580:intron | 20.0% |
| !!! | TTTTCTTTGTTTTGTAAGAA+AGG | + | chr1_2:16764569-16764588 | Msa0059580:intron | 20.0% |
| !!! | AGCAATTTTTTTAGATTTGA+AGG | + | chr1_2:16764870-16764889 | Msa0059580:intron | 20.0% |
| !!! | TTATTGTTATTGTCTAGTTT+TGG | - | chr1_2:16764924-16764943 | None:intergenic | 20.0% |
| !!! | TTTTTTTGACCTAATCTTTT+TGG | - | chr1_2:16764960-16764979 | None:intergenic | 20.0% |
| !!! | CAATTTAATTTTTGGTTCTA+CGG | - | chr1_2:16765138-16765157 | None:intergenic | 20.0% |
| !! | TTGAAAAGTAATATTTCAGA+CGG | + | chr1_2:16765206-16765225 | Msa0059580:intron | 20.0% |
| !! | TATATCGTAACTAATAATGT+AGG | + | chr1_2:16765274-16765293 | Msa0059580:intron | 20.0% |
| !! | AGATATAAAGTTGTCAAAAA+TGG | - | chr1_2:16765411-16765430 | None:intergenic | 20.0% |
| !!! | TTTCTCTATTGTTTTTGTTT+TGG | + | chr1_2:16765456-16765475 | Msa0059580:intron | 20.0% |
| !! | AGATGTTTAACTAAATAAAG+AGG | - | chr1_2:16765558-16765577 | None:intergenic | 20.0% |
| !! | GATTCAATCCATTAAAAATA+TGG | - | chr1_2:16765728-16765747 | None:intergenic | 20.0% |
| !! | TAATAATAGCACTATATAAG+TGG | + | chr1_2:16765906-16765925 | Msa0059580:intron | 20.0% |
| !!! | TTTGGTTTTAATTCAAAATG+GGG | - | chr1_2:16765933-16765952 | None:intergenic | 20.0% |
| !!! | GTTTGGTTTTAATTCAAAAT+GGG | - | chr1_2:16765934-16765953 | None:intergenic | 20.0% |
| !!! | TGTTTGGTTTTAATTCAAAA+TGG | - | chr1_2:16765935-16765954 | None:intergenic | 20.0% |
| !!! | GATAATAACAAATTTTGCTT+AGG | + | chr1_2:16766101-16766120 | Msa0059580:intron | 20.0% |
| !! | ATAATTTGAGAAATCAAAAG+TGG | + | chr1_2:16766830-16766849 | Msa0059580:intron | 20.0% |
| !!! | ACTATTAATTTTCTCAACAA+CGG | - | chr1_2:16767197-16767216 | None:intergenic | 20.0% |
| !! | TTGTTGAGAAAATTAATAGT+TGG | + | chr1_2:16767197-16767216 | Msa0059580:intron | 20.0% |
| !! | TGTTGAGAAAATTAATAGTT+GGG | + | chr1_2:16767198-16767217 | Msa0059580:intron | 20.0% |
| !!! | TTGCTTTATTACTCTTTAAA+GGG | + | chr1_2:16767226-16767245 | Msa0059580:intron | 20.0% |
| !! | TTTAAATAGAAAATGAAGAG+CGG | - | chr1_2:16767315-16767334 | None:intergenic | 20.0% |
| !! | CATTATACAAAAATATTGTG+AGG | - | chr1_2:16767620-16767639 | None:intergenic | 20.0% |
| ! | AATATGAAAAGTTTAGCCAA+AGG | + | chr1_2:16764260-16764279 | Msa0059580:intron | 25.0% |
| !!! | TCTGTTTATTTTGATCAAGA+TGG | - | chr1_2:16764501-16764520 | None:intergenic | 25.0% |
| !! | AAACAAAGAAAAGAAAGTGT+GGG | - | chr1_2:16764561-16764580 | None:intergenic | 25.0% |
| ! | AAAACAAAGAAAAGAAAGTG+TGG | - | chr1_2:16764562-16764581 | None:intergenic | 25.0% |
| !!! | ATCATTGTTTTGATTAGTTC+TGG | - | chr1_2:16764610-16764629 | None:intergenic | 25.0% |
| ! | AGAACTAATCAAAACAATGA+TGG | + | chr1_2:16764609-16764628 | Msa0059580:intron | 25.0% |
| ! | ACACAATGTTAAATTCATAG+GGG | - | chr1_2:16764698-16764717 | None:intergenic | 25.0% |
| ! | CACACAATGTTAAATTCATA+GGG | - | chr1_2:16764699-16764718 | None:intergenic | 25.0% |
| ! | ACACACAATGTTAAATTCAT+AGG | - | chr1_2:16764700-16764719 | None:intergenic | 25.0% |
| ! | ACTAAAAGACCAAAAAGATT+AGG | + | chr1_2:16764948-16764967 | Msa0059580:intron | 25.0% |
| ! | TGAAAAGTAATATTTCAGAC+GGG | + | chr1_2:16765207-16765226 | Msa0059580:intron | 25.0% |
| ! | TCATTTAGTTGACAACTTAT+GGG | - | chr1_2:16765519-16765538 | None:intergenic | 25.0% |
| ! | ATCATTTAGTTGACAACTTA+TGG | - | chr1_2:16765520-16765539 | None:intergenic | 25.0% |
| !!! | GGATCAAACCATATTTTTAA+TGG | + | chr1_2:16765717-16765736 | Msa0059580:intron | 25.0% |
| !!! | TTATCATCACTTGTTATGTT+TGG | - | chr1_2:16766024-16766043 | None:intergenic | 25.0% |
| ! | TAAAAATGAATGGAATTGGA+AGG | + | chr1_2:16766298-16766317 | Msa0059580:CDS | 25.0% |
| ! | AATTGGAAGGTTTAGTAATA+TGG | + | chr1_2:16766311-16766330 | Msa0059580:CDS | 25.0% |
| ! | AATATATAAGAAGACATCAC+CGG | + | chr1_2:16766340-16766359 | Msa0059580:CDS | 25.0% |
| !!! | GTGTGAAGATTTTTTGTTTT+TGG | + | chr1_2:16766542-16766561 | Msa0059580:intron | 25.0% |
| !!! | ATTTTTTGTTTTTGGATGCA+TGG | + | chr1_2:16766550-16766569 | Msa0059580:intron | 25.0% |
| ! | TTGTGTTAGATATTCACTTA+AGG | + | chr1_2:16766587-16766606 | Msa0059580:intron | 25.0% |
| ! | GTGATGGTTTATTTATTGTT+AGG | + | chr1_2:16766681-16766700 | Msa0059580:intron | 25.0% |
| ! | GGTTTATTTATTGTTAGGAT+TGG | + | chr1_2:16766686-16766705 | Msa0059580:intron | 25.0% |
| ! | TTATTTATTGTTAGGATTGG+TGG | + | chr1_2:16766689-16766708 | Msa0059580:intron | 25.0% |
| !!! | GAATGTTTTGATGATGTTTT+TGG | + | chr1_2:16766965-16766984 | Msa0059580:intron | 25.0% |
| !!! | GATGTTTTTGGTCTATTTTA+TGG | + | chr1_2:16766977-16766996 | Msa0059580:intron | 25.0% |
| !! | CTTGCTTTATTACTCTTTAA+AGG | + | chr1_2:16767225-16767244 | Msa0059580:intron | 25.0% |
| ! | TAATTGGTATGAAATTTACG+AGG | - | chr1_2:16767292-16767311 | None:intergenic | 25.0% |
| !!! | ACAATCTATTTTTGCATCTT+TGG | + | chr1_2:16767347-16767366 | Msa0059580:intron | 25.0% |
| ! | TGCTATTGAATAAAGAGTTT+CGG | + | chr1_2:16767587-16767606 | Msa0059580:intron | 25.0% |
| !! | ATAAGATTTTAAGCAAACAG+AGG | - | chr1_2:16767955-16767974 | None:intergenic | 25.0% |
| ! | TCCTTAAAATGATAACTCTT+TGG | + | chr1_2:16768018-16768037 | Msa0059580:intron | 25.0% |
| !! | ACCAAAGAGTTATCATTTTA+AGG | - | chr1_2:16768022-16768041 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATAA+CGG | - | chr1_2:16768186-16768205 | None:intergenic | 25.0% |
| ! | TATAGGAGCTTATAATAAGA+AGG | + | chr1_2:16768267-16768286 | Msa0059580:exon | 25.0% |
| ! | AAGATAATCAATAGAGCAAA+TGG | - | chr1_2:16768392-16768411 | None:intergenic | 25.0% |
| ! | TTGCAAACTTAGACGTTTTA+AGG | - | chr1_2:16764345-16764364 | None:intergenic | 30.0% |
| AAAGCTTATTGACCAAAAGA+TGG | + | chr1_2:16764405-16764424 | Msa0059580:intron | 30.0% | |
| AAGCTTATTGACCAAAAGAT+GGG | + | chr1_2:16764406-16764425 | Msa0059580:intron | 30.0% | |
| TCTTAGAAGAAAGTTGAAGA+AGG | + | chr1_2:16764525-16764544 | Msa0059580:intron | 30.0% | |
| ATCTCATGGATTTGATATGT+GGG | - | chr1_2:16764674-16764693 | None:intergenic | 30.0% | |
| TATCTCATGGATTTGATATG+TGG | - | chr1_2:16764675-16764694 | None:intergenic | 30.0% | |
| GGTTGTTCTACTTATCATTA+AGG | - | chr1_2:16764752-16764771 | None:intergenic | 30.0% | |
| GAACAACCATTAACTTATGA+AGG | + | chr1_2:16764764-16764783 | Msa0059580:intron | 30.0% | |
| !!! | TTTAGCTCTCAATGTCTTTT+GGG | - | chr1_2:16764827-16764846 | None:intergenic | 30.0% |
| ! | TCAATTTTCTTTTGTAGAGG+TGG | - | chr1_2:16764897-16764916 | None:intergenic | 30.0% |
| ! | CCTTCAATTTTCTTTTGTAG+AGG | - | chr1_2:16764900-16764919 | None:intergenic | 30.0% |
| CCTCTACAAAAGAAAATTGA+AGG | + | chr1_2:16764897-16764916 | Msa0059580:intron | 30.0% | |
| GTTTACTTCTTTAGCCAATA+AGG | + | chr1_2:16765011-16765030 | Msa0059580:intron | 30.0% | |
| GAATATGCAAAGTATGTGAT+TGG | - | chr1_2:16766163-16766182 | None:intergenic | 30.0% | |
| CTTTGCATATTCTTCTTCTT+TGG | + | chr1_2:16766171-16766190 | Msa0059580:intron | 30.0% | |
| AACAAAGAAAACAAAGTGTG+TGG | - | chr1_2:16766203-16766222 | None:intergenic | 30.0% | |
| !!! | ATAAGATTTTTTGCAGCACA+AGG | + | chr1_2:16766236-16766255 | Msa0059580:intron | 30.0% |
| AGCACAAGGATAATTTGAAT+AGG | + | chr1_2:16766250-16766269 | Msa0059580:intron | 30.0% | |
| ! | ATTGGAGGTGTAAAAATGAA+TGG | + | chr1_2:16766288-16766307 | Msa0059580:CDS | 30.0% |
| GGTGTAAAAATGAATGGAAT+TGG | + | chr1_2:16766294-16766313 | Msa0059580:CDS | 30.0% | |
| AAGGTTTAGTAATATGGAGA+TGG | + | chr1_2:16766317-16766336 | Msa0059580:CDS | 30.0% | |
| AGATATTCACTTAAGGTTGT+TGG | + | chr1_2:16766594-16766613 | Msa0059580:intron | 30.0% | |
| TAGTAAAGAGTCAAGAAACA+CGG | + | chr1_2:16766766-16766785 | Msa0059580:intron | 30.0% | |
| GTTTGTGTTAAGAAGAACTT+AGG | + | chr1_2:16767064-16767083 | Msa0059580:intron | 30.0% | |
| CATGTGTAAAAATCTTGTAG+TGG | + | chr1_2:16767370-16767389 | Msa0059580:intron | 30.0% | |
| !!! | ATGCATTTTTAGCACATCAA+AGG | + | chr1_2:16767435-16767454 | Msa0059580:intron | 30.0% |
| GAAAAAATCGAACTGAATTG+AGG | - | chr1_2:16767553-16767572 | None:intergenic | 30.0% | |
| TAATAAACATCACACAACGA+GGG | - | chr1_2:16767646-16767665 | None:intergenic | 30.0% | |
| !! | ACAAATGGTTTGTACTTTTG+TGG | - | chr1_2:16767721-16767740 | None:intergenic | 30.0% |
| !! | AGAGAAGTTGATGTTAAATC+AGG | + | chr1_2:16767784-16767803 | Msa0059580:CDS | 30.0% |
| !! | GAGAAGTTGATGTTAAATCA+GGG | + | chr1_2:16767785-16767804 | Msa0059580:CDS | 30.0% |
| TACTACAAGTACAGAAAGAT+TGG | + | chr1_2:16767816-16767835 | Msa0059580:CDS | 30.0% | |
| !!! | AAGTTTCTGGTCATTTTGTA+AGG | - | chr1_2:16767925-16767944 | None:intergenic | 30.0% |
| ! | ACTGGTAATTGAATCTTTTG+TGG | + | chr1_2:16768109-16768128 | Msa0059580:CDS | 30.0% |
| ATAATAAGAAGGTTCTTCCA+AGG | + | chr1_2:16768278-16768297 | Msa0059580:three_prime_UTR | 30.0% | |
| ! | ACCTTTGTCGTTCTTTTTCT+CGG | - | chr1_2:16764071-16764090 | None:intergenic | 35.0% |
| GTAGTGAAAAGCTTAACCAA+AGG | + | chr1_2:16764198-16764217 | Msa0059580:intron | 35.0% | |
| CTGGAATCTTCAAGAACATA+CGG | - | chr1_2:16764385-16764404 | None:intergenic | 35.0% | |
| ! | CTTTTGGTCAATAAGCTTTC+TGG | - | chr1_2:16764404-16764423 | None:intergenic | 35.0% |
| ! | GCAATAATCTACCCATCTTT+TGG | - | chr1_2:16764420-16764439 | None:intergenic | 35.0% |
| !! | AAATTCATAGGGGTATCTCA+TGG | - | chr1_2:16764688-16764707 | None:intergenic | 35.0% |
| CAACCATTAACTTATGAAGG+CGG | + | chr1_2:16764767-16764786 | Msa0059580:intron | 35.0% | |
| TTATGAAGGCGGTAGATTAA+AGG | + | chr1_2:16764778-16764797 | Msa0059580:intron | 35.0% | |
| !!! | GTTTAGCTCTCAATGTCTTT+TGG | - | chr1_2:16764828-16764847 | None:intergenic | 35.0% |
| ATCCAGGAACAACCTATTAA+AGG | + | chr1_2:16765241-16765260 | Msa0059580:intron | 35.0% | |
| TAGTTCGTGTGACCTTTAAT+AGG | - | chr1_2:16765256-16765275 | None:intergenic | 35.0% | |
| ! | ATAACCTTGACACCACATTT+TGG | + | chr1_2:16765345-16765364 | Msa0059580:intron | 35.0% |
| !! | GGTGAGAAGGGTTTTTATTT+AGG | + | chr1_2:16765366-16765385 | Msa0059580:intron | 35.0% |
| TTGGAGTTGTTGAAATATGG+TGG | - | chr1_2:16765675-16765694 | None:intergenic | 35.0% | |
| CGATTGGAGTTGTTGAAATA+TGG | - | chr1_2:16765678-16765697 | None:intergenic | 35.0% | |
| GTAGATTTGAAGATGACGAT+TGG | - | chr1_2:16765694-16765713 | None:intergenic | 35.0% | |
| CGTCATCTTCAAATCTACAA+CGG | + | chr1_2:16765696-16765715 | Msa0059580:intron | 35.0% | |
| TTGTGTGGGGTGTATTTAAT+GGG | - | chr1_2:16765815-16765834 | None:intergenic | 35.0% | |
| !! | ATTAGCTGATTTGGTTGTGT+GGG | - | chr1_2:16765829-16765848 | None:intergenic | 35.0% |
| !! | AGGTGTAGAAGAAGTGTTAT+TGG | + | chr1_2:16766270-16766289 | Msa0059580:CDS | 35.0% |
| !! | TGTAGAAGAAGTGTTATTGG+AGG | + | chr1_2:16766273-16766292 | Msa0059580:CDS | 35.0% |
| TGTTAAGCATATTAGAGCAC+CGG | + | chr1_2:16766398-16766417 | Msa0059580:CDS | 35.0% | |
| ! | TTAGGATTGGTGGTTTGATT+TGG | + | chr1_2:16766699-16766718 | Msa0059580:intron | 35.0% |
| !! | TTCAATCTGTTCTGAAGCAT+TGG | + | chr1_2:16766927-16766946 | Msa0059580:intron | 35.0% |
| CTGATCTGCTACTAAATCTT+CGG | + | chr1_2:16767027-16767046 | Msa0059580:intron | 35.0% | |
| ! | TGCTACTAAATCTTCGGTTT+TGG | + | chr1_2:16767033-16767052 | Msa0059580:intron | 35.0% |
| TTATCTGCTTTACCCTCTAA+AGG | - | chr1_2:16767168-16767187 | None:intergenic | 35.0% | |
| AGAAAATGAAGAGCGGTAAT+TGG | - | chr1_2:16767308-16767327 | None:intergenic | 35.0% | |
| ATTGAGGTTCGCTTTGTAAT+TGG | - | chr1_2:16767537-16767556 | None:intergenic | 35.0% | |
| GTAATAAACATCACACAACG+AGG | - | chr1_2:16767647-16767666 | None:intergenic | 35.0% | |
| ! | AGATTTGCTTTCTCTAGGTA+TGG | + | chr1_2:16767671-16767690 | Msa0059580:intron | 35.0% |
| ACAACACATCTGCTTACAAA+TGG | - | chr1_2:16767736-16767755 | None:intergenic | 35.0% | |
| TTGTAAGCAGATGTGTTGTA+AGG | + | chr1_2:16767737-16767756 | Msa0059580:CDS | 35.0% | |
| TGTAAGCAGATGTGTTGTAA+GGG | + | chr1_2:16767738-16767757 | Msa0059580:CDS | 35.0% | |
| CAGAGGAACAAAAAAGTTTC+TGG | - | chr1_2:16767938-16767957 | None:intergenic | 35.0% | |
| CATCTTTCAGAACTATTCGT+CGG | + | chr1_2:16768043-16768062 | Msa0059580:intron | 35.0% | |
| TTCCATCAATAATTTCAGGG+TGG | - | chr1_2:16768079-16768098 | None:intergenic | 35.0% | |
| ACCCTGAAATTATTGATGGA+AGG | + | chr1_2:16768078-16768097 | Msa0059580:CDS | 35.0% | |
| GCCTTCCATCAATAATTTCA+GGG | - | chr1_2:16768082-16768101 | None:intergenic | 35.0% | |
| ! | GGTAATTGAATCTTTTGTGG+TGG | + | chr1_2:16768112-16768131 | Msa0059580:CDS | 35.0% |
| GCAAATGGAATCAAATCACT+CGG | - | chr1_2:16768377-16768396 | None:intergenic | 35.0% | |
| ! | CCTTTGTCGTTCTTTTTCTC+GGG | - | chr1_2:16764070-16764089 | None:intergenic | 40.0% |
| ! | AAACTTGCTTGTTCCAGTAG+TGG | + | chr1_2:16764097-16764116 | Msa0059580:CDS | 40.0% |
| CAGAAACGAAAGCCATTCAA+TGG | + | chr1_2:16764464-16764483 | Msa0059580:intron | 40.0% | |
| GAAAGCCATTCAATGGTAGA+AGG | + | chr1_2:16764471-16764490 | Msa0059580:intron | 40.0% | |
| GGTGAACAAACAAACAACTC+AGG | + | chr1_2:16764630-16764649 | Msa0059580:intron | 40.0% | |
| CTACCGCCTTCATAAGTTAA+TGG | - | chr1_2:16764773-16764792 | None:intergenic | 40.0% | |
| TCCTAGGTGTGATACCTTAT+TGG | - | chr1_2:16765028-16765047 | None:intergenic | 40.0% | |
| !! | GGTCTACGTTAAGTTGGATT+GGG | - | chr1_2:16765117-16765136 | None:intergenic | 40.0% |
| TTCTACGGTCTACGTTAAGT+TGG | - | chr1_2:16765123-16765142 | None:intergenic | 40.0% | |
| TAATATTTCAGACGGGACCA+AGG | + | chr1_2:16765214-16765233 | Msa0059580:intron | 40.0% | |
| GACCTTTAATAGGTTGTTCC+TGG | - | chr1_2:16765246-16765265 | None:intergenic | 40.0% | |
| !! | ACACCACATTTTGGTGAGAA+GGG | + | chr1_2:16765354-16765373 | Msa0059580:intron | 40.0% |
| AAACCCTTCTCACCAAAATG+TGG | - | chr1_2:16765360-16765379 | None:intergenic | 40.0% | |
| ! | TTGTTGAAATATGGTGGAGG+AGG | - | chr1_2:16765669-16765688 | None:intergenic | 40.0% |
| GAGTTGTTGAAATATGGTGG+AGG | - | chr1_2:16765672-16765691 | None:intergenic | 40.0% | |
| GTTGTGTGGGGTGTATTTAA+TGG | - | chr1_2:16765816-16765835 | None:intergenic | 40.0% | |
| !! | TTAGCTGATTTGGTTGTGTG+GGG | - | chr1_2:16765828-16765847 | None:intergenic | 40.0% |
| !! | CATTAGCTGATTTGGTTGTG+TGG | - | chr1_2:16765830-16765849 | None:intergenic | 40.0% |
| TCATCAGGCATTAGCTGATT+TGG | - | chr1_2:16765838-16765857 | None:intergenic | 40.0% | |
| AAATCAGCTAATGCCTGATG+AGG | + | chr1_2:16765837-16765856 | Msa0059580:intron | 40.0% | |
| !! | TCTTTGTTGCTTTCCTCATC+AGG | - | chr1_2:16765853-16765872 | None:intergenic | 40.0% |
| GCAACAAAGAAAGCCACAAA+AGG | + | chr1_2:16765863-16765882 | Msa0059580:intron | 40.0% | |
| !! | ACAGTTTGCTTGTCCTTTTG+TGG | - | chr1_2:16765879-16765898 | None:intergenic | 40.0% |
| AGGTAAGTTTCCATGATCCA+TGG | + | chr1_2:16766121-16766140 | Msa0059580:intron | 40.0% | |
| TAAGTTTCCATGATCCATGG+TGG | + | chr1_2:16766124-16766143 | Msa0059580:intron | 40.0% | |
| AAATAAAGAAGGGCAACCTG+AGG | - | chr1_2:16766426-16766445 | None:intergenic | 40.0% | |
| ! | TTTTGGATGCATGGTTGTTG+TGG | + | chr1_2:16766559-16766578 | Msa0059580:intron | 40.0% |
| CACTTAAGGTTGTTGGAACT+TGG | + | chr1_2:16766601-16766620 | Msa0059580:intron | 40.0% | |
| !! | GATTGGTGGTTTGATTTGGA+GGG | + | chr1_2:16766703-16766722 | Msa0059580:intron | 40.0% |
| !! | TTGATTTGGAGGGAAGGTTA+TGG | + | chr1_2:16766713-16766732 | Msa0059580:intron | 40.0% |
| ATGACGCTGACGAGTTATAT+AGG | + | chr1_2:16766805-16766824 | Msa0059580:intron | 40.0% | |
| !! | CTGAAGCATTGGTGTTACAT+AGG | + | chr1_2:16766938-16766957 | Msa0059580:intron | 40.0% |
| GCTTGAACGAAGCTAAATCT+GGG | - | chr1_2:16767136-16767155 | None:intergenic | 40.0% | |
| AAGCGAGCAATTTCCTTTAG+AGG | + | chr1_2:16767152-16767171 | Msa0059580:intron | 40.0% | |
| AGCGAGCAATTTCCTTTAGA+GGG | + | chr1_2:16767153-16767172 | Msa0059580:intron | 40.0% | |
| CATCAAAGGTTCGATCAGAT+TGG | + | chr1_2:16767449-16767468 | Msa0059580:intron | 40.0% | |
| ! | AAGGTTCGATCAGATTGGTT+TGG | + | chr1_2:16767454-16767473 | Msa0059580:intron | 40.0% |
| GTAAGCAGATGTGTTGTAAG+GGG | + | chr1_2:16767739-16767758 | Msa0059580:CDS | 40.0% | |
| CTTTCTGTACTTGTAGTAGC+AGG | - | chr1_2:16767814-16767833 | None:intergenic | 40.0% | |
| GAACATGCTCATTGTCATCA+AGG | - | chr1_2:16767846-16767865 | None:intergenic | 40.0% | |
| GTTCTCAGCATCAGGATTAT+TGG | + | chr1_2:16767862-16767881 | Msa0059580:CDS | 40.0% | |
| CTCCACCCTGAAATTATTGA+TGG | + | chr1_2:16768074-16768093 | Msa0059580:CDS | 40.0% | |
| GGCCTTCCATCAATAATTTC+AGG | - | chr1_2:16768083-16768102 | None:intergenic | 40.0% | |
| GAAATTATTGATGGAAGGCC+AGG | + | chr1_2:16768083-16768102 | Msa0059580:CDS | 40.0% | |
| GATTCAATTACCAGTGTACC+TGG | - | chr1_2:16768104-16768123 | None:intergenic | 40.0% | |
| !! | AGCAATTCCTTCTGAGACAT+CGG | - | chr1_2:16768216-16768235 | None:intergenic | 40.0% |
| TGAACCAATTGATCGGGTAT+AGG | + | chr1_2:16768250-16768269 | Msa0059580:CDS | 40.0% | |
| CCCGAGAAAAAGAACGACAA+AGG | + | chr1_2:16764067-16764086 | Msa0059580:CDS | 45.0% | |
| AGCATCGCATATTCCACTAC+TGG | - | chr1_2:16764113-16764132 | None:intergenic | 45.0% | |
| !! | CTGCTTTGAAGTCTGAGTCT+GGG | + | chr1_2:16764131-16764150 | Msa0059580:CDS | 45.0% |
| !! | TGCTTTGAAGTCTGAGTCTG+GGG | + | chr1_2:16764132-16764151 | Msa0059580:CDS | 45.0% |
| GGACGTAGTACAACAGGATA+AGG | + | chr1_2:16764153-16764172 | Msa0059580:CDS | 45.0% | |
| CTTAACCAAAGGTTGTCACG+TGG | + | chr1_2:16764209-16764228 | Msa0059580:intron | 45.0% | |
| TTTCTCCACGTGACAACCTT+TGG | - | chr1_2:16764217-16764236 | None:intergenic | 45.0% | |
| TTTAGCCAAAGGTTGTCACG+TGG | + | chr1_2:16764271-16764290 | Msa0059580:intron | 45.0% | |
| TTAGCCAAAGGTTGTCACGT+GGG | + | chr1_2:16764272-16764291 | Msa0059580:intron | 45.0% | |
| GTCGTCCTTCTACCATTGAA+TGG | - | chr1_2:16764479-16764498 | None:intergenic | 45.0% | |
| ! | GCCAATAAGGTATCACACCT+AGG | + | chr1_2:16765024-16765043 | Msa0059580:intron | 45.0% |
| ! | CATCTTATTGGCTGCATCCT+AGG | - | chr1_2:16765044-16765063 | None:intergenic | 45.0% |
| !! | CGGTCTACGTTAAGTTGGAT+TGG | - | chr1_2:16765118-16765137 | None:intergenic | 45.0% |
| ! | CTCACCAAAATGTGGTGTCA+AGG | - | chr1_2:16765352-16765371 | None:intergenic | 45.0% |
| !! | GACACCACATTTTGGTGAGA+AGG | + | chr1_2:16765353-16765372 | Msa0059580:intron | 45.0% |
| ! | TGAAATATGGTGGAGGAGGA+TGG | - | chr1_2:16765665-16765684 | None:intergenic | 45.0% |
| GATATTCAGAGTCACCACCA+TGG | - | chr1_2:16766141-16766160 | None:intergenic | 45.0% | |
| ! | GAAGCACACTGATTATGTCC+AGG | - | chr1_2:16766372-16766391 | None:intergenic | 45.0% |
| !! | GGATTGGTGGTTTGATTTGG+AGG | + | chr1_2:16766702-16766721 | Msa0059580:intron | 45.0% |
| AGAAACACGGACATGAGACA+CGG | + | chr1_2:16766779-16766798 | Msa0059580:intron | 45.0% | |
| CGTTTGACACCAACATGTGT+CGG | + | chr1_2:16766890-16766909 | Msa0059580:intron | 45.0% | |
| TTTATGGTTGACCTGCTCTG+TGG | + | chr1_2:16766993-16767012 | Msa0059580:intron | 45.0% | |
| ATCACATTGTACCACAGAGC+AGG | - | chr1_2:16767007-16767026 | None:intergenic | 45.0% | |
| GATTCTTGTGAAGCATAGCG+TGG | + | chr1_2:16767109-16767128 | Msa0059580:intron | 45.0% | |
| CGCTTGAACGAAGCTAAATC+TGG | - | chr1_2:16767137-16767156 | None:intergenic | 45.0% | |
| ! | CGCGTAGATTTGCTTTCTCT+AGG | + | chr1_2:16767666-16767685 | Msa0059580:intron | 45.0% |
| CTTTCTCTAGGTATGGTCCT+TGG | + | chr1_2:16767678-16767697 | Msa0059580:intron | 45.0% | |
| AGGTATGGTCCTTGGTAAGA+AGG | + | chr1_2:16767686-16767705 | Msa0059580:intron | 45.0% | |
| CTGATCGAACCTTCTTACCA+AGG | - | chr1_2:16767698-16767717 | None:intergenic | 45.0% | |
| ATGAGCATGTTCTCAGCATC+AGG | + | chr1_2:16767854-16767873 | Msa0059580:CDS | 45.0% | |
| CTCAGCATCAGGATTATTGG+TGG | + | chr1_2:16767865-16767884 | Msa0059580:CDS | 45.0% | |
| !! | TGGTGGTGATCATCGACTTA+CGG | + | chr1_2:16767882-16767901 | Msa0059580:CDS | 45.0% |
| !!! | TTTTGTGGTGGATATACCCG+AGG | + | chr1_2:16768124-16768143 | Msa0059580:CDS | 45.0% |
| !! | TTTGTGGTGGATATACCCGA+GGG | + | chr1_2:16768125-16768144 | Msa0059580:CDS | 45.0% |
| ACCGCACTGAACCAATTGAT+CGG | + | chr1_2:16768243-16768262 | Msa0059580:CDS | 45.0% | |
| AGCTCCTATACCCGATCAAT+TGG | - | chr1_2:16768257-16768276 | None:intergenic | 45.0% | |
| !! | GCTGCTTTGAAGTCTGAGTC+TGG | + | chr1_2:16764130-16764149 | Msa0059580:CDS | 50.0% |
| CAGGATAAGGTTCCTCAGAC+AGG | + | chr1_2:16764166-16764185 | Msa0059580:CDS | 50.0% | |
| TAAGGTTCCTCAGACAGGAC+AGG | + | chr1_2:16764171-16764190 | Msa0059580:CDS | 50.0% | |
| TCTACCCACGTGACAACCTT+TGG | - | chr1_2:16764279-16764298 | None:intergenic | 50.0% | |
| GTTGTTCCTGGATTGAGCCT+TGG | - | chr1_2:16765234-16765253 | None:intergenic | 50.0% | |
| ! | AATATGGTGGAGGAGGATGG+CGG | - | chr1_2:16765662-16765681 | None:intergenic | 50.0% |
| AGAGTCACCACCATGGATCA+TGG | - | chr1_2:16766134-16766153 | None:intergenic | 50.0% | |
| !! | TATTAGAGCACCGGTTCCTC+AGG | + | chr1_2:16766407-16766426 | Msa0059580:CDS | 50.0% |
| !! | GGTGGTTTGATTTGGAGGGA+AGG | + | chr1_2:16766707-16766726 | Msa0059580:intron | 50.0% |
| CACCAACATGTGTCGGATAC+TGG | + | chr1_2:16766897-16766916 | Msa0059580:intron | 50.0% | |
| GTCCAGTATCCGACACATGT+TGG | - | chr1_2:16766902-16766921 | None:intergenic | 50.0% | |
| GTAAGGGGAAACCTCGAGAT+CGG | + | chr1_2:16767754-16767773 | Msa0059580:CDS | 50.0% | |
| CTCTTAGACTTCCGATCTCG+AGG | - | chr1_2:16767768-16767787 | None:intergenic | 50.0% | |
| !! | TTGTGGTGGATATACCCGAG+GGG | + | chr1_2:16768126-16768145 | Msa0059580:CDS | 50.0% |
| GAAGTAGCAGGTCTCGTCTT+TGG | - | chr1_2:16768156-16768175 | None:intergenic | 50.0% | |
| AACGGCTTCAACGAAGTAGC+AGG | - | chr1_2:16768168-16768187 | None:intergenic | 50.0% | |
| TCACTTGCCGATGTCTCAGA+AGG | + | chr1_2:16768206-16768225 | Msa0059580:CDS | 50.0% | |
| ! | CCCGATCAATTGGTTCAGTG+CGG | - | chr1_2:16768247-16768266 | None:intergenic | 50.0% |
| CCGCACTGAACCAATTGATC+GGG | + | chr1_2:16768244-16768263 | Msa0059580:CDS | 50.0% | |
| CCAAGGACATATAGCTGCCA+CGG | + | chr1_2:16768295-16768314 | Msa0059580:three_prime_UTR | 50.0% | |
| ! | AGCTTCAGCGGTTTTCCTCT+TGG | + | chr1_2:16768322-16768341 | Msa0059580:three_prime_UTR | 50.0% |
| ! | TTCAGCGGTTTTCCTCTTGG+AGG | + | chr1_2:16768325-16768344 | Msa0059580:three_prime_UTR | 50.0% |
| ! | GGTTTTCCTCTTGGAGGCTT+AGG | + | chr1_2:16768331-16768350 | Msa0059580:three_prime_UTR | 50.0% |
| GTCTGGGGACGTAGTACAAC+AGG | + | chr1_2:16764147-16764166 | Msa0059580:CDS | 55.0% | |
| TACACCACCTGTCCTGTCTG+AGG | - | chr1_2:16764181-16764200 | None:intergenic | 55.0% | |
| GATTATGTCCAGGCTGCTGC+CGG | - | chr1_2:16766362-16766381 | None:intergenic | 55.0% | |
| AGAAGGGCAACCTGAGGAAC+CGG | - | chr1_2:16766420-16766439 | None:intergenic | 55.0% | |
| TGATGGAAGGCCAGGTACAC+TGG | + | chr1_2:16768091-16768110 | Msa0059580:CDS | 55.0% | |
| !! | TCGTCTTTGGTGTTCCCCTC+GGG | - | chr1_2:16768143-16768162 | None:intergenic | 55.0% |
| !! | CTCGTCTTTGGTGTTCCCCT+CGG | - | chr1_2:16768144-16768163 | None:intergenic | 55.0% |
| CCGTGGCAGCTATATGTCCT+TGG | - | chr1_2:16768298-16768317 | None:intergenic | 55.0% | |
| TGCCACGGATGAAGCTTCAG+CGG | + | chr1_2:16768310-16768329 | Msa0059580:three_prime_UTR | 55.0% | |
| AACCGCTGAAGCTTCATCCG+TGG | - | chr1_2:16768315-16768334 | None:intergenic | 55.0% | |
| CCTCTTGGAGGCTTAGGAGA+CGG | + | chr1_2:16768337-16768356 | Msa0059580:three_prime_UTR | 55.0% | |
| GGTTCCTCAGACAGGACAGG+TGG | + | chr1_2:16764174-16764193 | Msa0059580:intron | 60.0% | |
| ACGGGACCAAGGCTCAATCC+AGG | + | chr1_2:16765225-16765244 | Msa0059580:intron | 60.0% | |
| CCGTCTCCTAAGCCTCCAAG+AGG | - | chr1_2:16768340-16768359 | None:intergenic | 60.0% | |
| TGGAGGCTTAGGAGACGGAC+TGG | + | chr1_2:16768342-16768361 | Msa0059580:three_prime_UTR | 60.0% | |
| AGACATCACCGGCAGCAGCC+TGG | + | chr1_2:16766351-16766370 | Msa0059580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16764055 | 16768426 | 16764055 | ID=Msa0059580;Name=Msa0059580 |
| chr1_2 | mRNA | 16764055 | 16768426 | 16764055 | ID=Msa0059580-mRNA-1;Parent=Msa0059580;Name=Msa0059580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.5|0.75|1|1|4|155|249 |
| chr1_2 | exon | 16764055 | 16764192 | 16764055 | ID=Msa0059580-mRNA-1:exon:6599;Parent=Msa0059580-mRNA-1 |
| chr1_2 | exon | 16766252 | 16766428 | 16766252 | ID=Msa0059580-mRNA-1:exon:6600;Parent=Msa0059580-mRNA-1 |
| chr1_2 | exon | 16767688 | 16767903 | 16767688 | ID=Msa0059580-mRNA-1:exon:6601;Parent=Msa0059580-mRNA-1 |
| chr1_2 | exon | 16768053 | 16768426 | 16768053 | ID=Msa0059580-mRNA-1:exon:6602;Parent=Msa0059580-mRNA-1 |
| chr1_2 | CDS | 16764055 | 16764192 | 16764055 | ID=Msa0059580-mRNA-1:cds;Parent=Msa0059580-mRNA-1 |
| chr1_2 | CDS | 16766252 | 16766428 | 16766252 | ID=Msa0059580-mRNA-1:cds;Parent=Msa0059580-mRNA-1 |
| chr1_2 | CDS | 16767688 | 16767903 | 16767688 | ID=Msa0059580-mRNA-1:cds;Parent=Msa0059580-mRNA-1 |
| chr1_2 | CDS | 16768053 | 16768271 | 16768053 | ID=Msa0059580-mRNA-1:cds;Parent=Msa0059580-mRNA-1 |
| chr1_2 | three_prime_UTR | 16768272 | 16768426 | 16768272 | ID=Msa0059580-mRNA-1:three_prime_utr;Parent=Msa0059580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
