Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010540 | sp|O49285|ACR3_ARATH | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010540 | Msa0059920 | 0.834476 | 2.932926e-56 | -8.615850e-47 |
| Msa0010540 | Msa0104820 | 0.844152 | 9.021528e-59 | -8.615850e-47 |
| Msa0010540 | Msa0151160 | 0.815852 | 7.474790e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010540 | MtrunA17_Chr1g0159541 | 98.321 | 417 | 7 | 0 | 1 | 417 | 38 | 454 | 0.0 | 847 |
| Msa0010540 | MtrunA17_Chr3g0125661 | 80.096 | 417 | 75 | 6 | 1 | 416 | 38 | 447 | 0.0 | 669 |
| Msa0010540 | MtrunA17_Chr7g0222461 | 51.202 | 416 | 190 | 5 | 1 | 416 | 39 | 441 | 3.84e-142 | 413 |
| Msa0010540 | MtrunA17_Chr5g0420221 | 53.659 | 410 | 168 | 7 | 1 | 409 | 46 | 434 | 1.06e-141 | 412 |
| Msa0010540 | MtrunA17_Chr7g0224571 | 48.558 | 416 | 203 | 6 | 1 | 415 | 30 | 435 | 2.03e-130 | 382 |
| Msa0010540 | MtrunA17_Chr4g0056741 | 46.851 | 397 | 171 | 7 | 1 | 389 | 35 | 399 | 5.19e-121 | 358 |
| Msa0010540 | MtrunA17_Chr5g0398581 | 44.418 | 421 | 205 | 8 | 1 | 416 | 35 | 431 | 1.91e-116 | 347 |
| Msa0010540 | MtrunA17_Chr5g0400941 | 46.192 | 407 | 200 | 8 | 1 | 395 | 38 | 437 | 3.63e-116 | 348 |
| Msa0010540 | MtrunA17_Chr4g0054261 | 39.447 | 398 | 224 | 4 | 1 | 383 | 57 | 452 | 2.58e-94 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010540 | AT1G76990.4 | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Msa0010540 | AT1G76990.5 | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Msa0010540 | AT1G76990.2 | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Msa0010540 | AT1G76990.3 | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Msa0010540 | AT1G76990.1 | 68.706 | 425 | 114 | 9 | 1 | 416 | 38 | 452 | 0.0 | 587 |
| Msa0010540 | AT1G69040.2 | 51.313 | 419 | 181 | 7 | 1 | 413 | 40 | 441 | 5.00e-136 | 397 |
| Msa0010540 | AT1G69040.1 | 51.313 | 419 | 181 | 7 | 1 | 413 | 36 | 437 | 6.42e-136 | 397 |
| Msa0010540 | AT2G03730.2 | 49.522 | 418 | 196 | 7 | 1 | 414 | 40 | 446 | 6.35e-132 | 387 |
| Msa0010540 | AT2G03730.1 | 49.522 | 418 | 196 | 7 | 1 | 414 | 40 | 446 | 6.35e-132 | 387 |
| Msa0010540 | AT5G25320.3 | 48.507 | 402 | 181 | 5 | 1 | 377 | 1 | 401 | 4.35e-129 | 380 |
| Msa0010540 | AT5G25320.1 | 48.259 | 402 | 182 | 5 | 1 | 377 | 40 | 440 | 3.42e-127 | 377 |
| Msa0010540 | AT3G01990.10 | 50.265 | 378 | 173 | 5 | 1 | 378 | 31 | 393 | 8.54e-126 | 371 |
| Msa0010540 | AT3G01990.1 | 50.265 | 378 | 173 | 5 | 1 | 378 | 31 | 393 | 8.54e-126 | 371 |
| Msa0010540 | AT3G01990.7 | 50.265 | 378 | 173 | 5 | 1 | 378 | 45 | 407 | 8.60e-126 | 371 |
| Msa0010540 | AT3G01990.5 | 50.265 | 378 | 173 | 5 | 1 | 378 | 45 | 407 | 8.60e-126 | 371 |
| Msa0010540 | AT3G01990.6 | 50.265 | 378 | 173 | 5 | 1 | 378 | 45 | 407 | 1.37e-125 | 371 |
| Msa0010540 | AT3G01990.11 | 50.265 | 378 | 173 | 5 | 1 | 378 | 31 | 393 | 1.75e-125 | 370 |
| Msa0010540 | AT4G22780.1 | 47.230 | 379 | 175 | 4 | 1 | 378 | 35 | 389 | 7.82e-116 | 346 |
| Msa0010540 | AT4G22780.2 | 47.230 | 379 | 175 | 4 | 1 | 378 | 35 | 389 | 7.82e-116 | 346 |
| Msa0010540 | AT1G12420.1 | 45.128 | 390 | 192 | 7 | 1 | 390 | 35 | 402 | 2.40e-110 | 332 |
| Msa0010540 | AT3G01990.9 | 48.889 | 315 | 146 | 5 | 1 | 315 | 31 | 330 | 1.29e-97 | 295 |
| Msa0010540 | AT3G01990.4 | 48.889 | 315 | 146 | 5 | 1 | 315 | 45 | 344 | 1.43e-97 | 296 |
| Msa0010540 | AT3G01990.2 | 49.355 | 310 | 142 | 5 | 1 | 310 | 45 | 339 | 2.34e-97 | 295 |
| Msa0010540 | AT5G65890.1 | 38.952 | 439 | 241 | 7 | 1 | 417 | 39 | 472 | 3.70e-97 | 299 |
| Msa0010540 | AT5G65890.3 | 38.952 | 439 | 241 | 7 | 1 | 417 | 39 | 472 | 3.70e-97 | 299 |
| Msa0010540 | AT5G25320.2 | 45.075 | 335 | 158 | 5 | 1 | 310 | 40 | 373 | 8.11e-93 | 285 |
| Msa0010540 | AT1G12420.2 | 43.182 | 352 | 178 | 7 | 39 | 390 | 1 | 330 | 2.29e-92 | 283 |
| Msa0010540 | AT5G65890.4 | 38.353 | 425 | 235 | 7 | 15 | 417 | 1 | 420 | 1.60e-91 | 283 |
| Msa0010540 | AT5G65890.2 | 38.353 | 425 | 235 | 7 | 15 | 417 | 1 | 420 | 1.60e-91 | 283 |
| Msa0010540 | AT3G01990.3 | 46.713 | 289 | 139 | 5 | 1 | 289 | 45 | 318 | 5.33e-78 | 244 |
| Msa0010540 | AT3G01990.8 | 46.713 | 289 | 139 | 5 | 1 | 289 | 31 | 304 | 6.13e-78 | 244 |
| Msa0010540 | AT5G65890.5 | 36.782 | 348 | 201 | 5 | 87 | 417 | 13 | 358 | 4.46e-68 | 220 |
Find 147 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAACTCTTCACACCTTC+TGG | 0.132030 | 1_1:+15945378 | None:intergenic |
| TTGATTCTCCTCCCTCTTTC+AGG | 0.151257 | 1_1:-15944957 | Msa0010540:CDS |
| AATACGTTCTATTTCGATAT+TGG | 0.184866 | 1_1:+15944933 | None:intergenic |
| TTCTGATGGTAGTTGGTTTA+TGG | 0.190044 | 1_1:-15946180 | Msa0010540:CDS |
| GCCCATCCTCGAGAGGTTTC+TGG | 0.246221 | 1_1:+15942653 | None:intergenic |
| CACGACTTCCAGCAGAATTC+CGG | 0.249259 | 1_1:+15946250 | None:intergenic |
| ATACGTTCTATTTCGATATT+GGG | 0.265506 | 1_1:+15944934 | None:intergenic |
| AGGTTCTTGACTTAATTAAA+AGG | 0.270566 | 1_1:-15942596 | Msa0010540:exon |
| GCAAATTACAATAATAAGAT+AGG | 0.273102 | 1_1:-15942240 | Msa0010540:three_prime_UTR |
| CCCAACTCTTCACACCTTCT+GGG | 0.315377 | 1_1:+15945379 | None:intergenic |
| GAAGCACTGCGTAAAGAAAT+TGG | 0.317035 | 1_1:-15942725 | Msa0010540:CDS |
| GCTAGAGTAAGCTTCTTCTT+TGG | 0.317293 | 1_1:-15942632 | Msa0010540:CDS |
| CCAAATGTTGTTTGCTGATA+GGG | 0.317607 | 1_1:-15945019 | Msa0010540:CDS |
| CTAGAGTAAGCTTCTTCTTT+GGG | 0.326628 | 1_1:-15942631 | Msa0010540:CDS |
| TTGTTGCATCATTGACATAA+AGG | 0.332592 | 1_1:+15945190 | None:intergenic |
| ATAGAACGTATTGAAGAAAA+AGG | 0.338531 | 1_1:-15944922 | Msa0010540:CDS |
| ACCAAATGTTGTTTGCTGAT+AGG | 0.350530 | 1_1:-15945020 | Msa0010540:CDS |
| CCCTATCAGCAAACAACATT+TGG | 0.356933 | 1_1:+15945019 | None:intergenic |
| TGAGATGGACATGTTATGAT+AGG | 0.378598 | 1_1:+15942413 | None:intergenic |
| ATTTAGTCCTTTCTCTCCTA+TGG | 0.378855 | 1_1:+15942799 | None:intergenic |
| CTTCTTCTTTGGGAACTTGT+TGG | 0.378986 | 1_1:-15942621 | Msa0010540:CDS |
| GGTGAAACCCATGGAGAAAC+TGG | 0.381534 | 1_1:+15945068 | None:intergenic |
| TCGAGAGGTTTCTGGTGCTT+TGG | 0.382279 | 1_1:+15942661 | None:intergenic |
| CAGCTGCAATCACATTGAAT+TGG | 0.392381 | 1_1:+15945247 | None:intergenic |
| ACGACTTCCAGCAGAATTCC+GGG | 0.392506 | 1_1:+15946251 | None:intergenic |
| AACATCTTACAAGCATTGTT+TGG | 0.393303 | 1_1:+15942453 | None:intergenic |
| TCTGGGCTCTTGCGGCCCTT+TGG | 0.393975 | 1_1:+15945396 | None:intergenic |
| GGGTTTCACCTTCACCCATA+TGG | 0.396055 | 1_1:-15945055 | Msa0010540:CDS |
| CTGAAGTTTGGACTCATAAC+AGG | 0.401956 | 1_1:-15945227 | Msa0010540:CDS |
| TCTGGTGCTTTGGTGTTGGC+TGG | 0.406285 | 1_1:+15942671 | None:intergenic |
| ACATATCTTCTGATGGTAGT+TGG | 0.412715 | 1_1:-15946187 | Msa0010540:CDS |
| GGTGTAGCCTTCTGTCCATA+TGG | 0.416835 | 1_1:+15945040 | None:intergenic |
| ATGTGATTGCAGCTGAAGTT+TGG | 0.418119 | 1_1:-15945239 | Msa0010540:CDS |
| ATTGTTTGGTTTAAAACAAA+AGG | 0.420375 | 1_1:+15942467 | None:intergenic |
| ATCAGAAGATATGTAAGCTT+TGG | 0.421120 | 1_1:+15946196 | None:intergenic |
| GCCCAGAAGGTGTGAAGAGT+TGG | 0.421778 | 1_1:-15945380 | Msa0010540:CDS |
| AGAACGGCTTAACAGTTTGT+AGG | 0.425881 | 1_1:-15942835 | Msa0010540:CDS |
| CATTGAATTGGAAGCTCGCC+AGG | 0.426882 | 1_1:+15945259 | None:intergenic |
| ACAAAAGACCTGGGCGGTCC+CGG | 0.430029 | 1_1:+15945298 | None:intergenic |
| GGTTTCTGGTGCTTTGGTGT+TGG | 0.431935 | 1_1:+15942667 | None:intergenic |
| CATACAGCCATTGAGCTCAT+TGG | 0.446032 | 1_1:-15945321 | Msa0010540:CDS |
| ACTTGGACAGTGCTTGAACT+TGG | 0.448825 | 1_1:-15942491 | Msa0010540:three_prime_UTR |
| CAATAAACCCGGAATTCTGC+TGG | 0.451982 | 1_1:-15946258 | Msa0010540:CDS |
| AGTAAATTAGGCTAAACATT+AGG | 0.453633 | 1_1:-15946395 | Msa0010540:five_prime_UTR |
| AACTAATGATGATGGCCACT+TGG | 0.453915 | 1_1:+15946367 | None:intergenic |
| AATTATTGACTTCATTGAAA+AGG | 0.455728 | 1_1:-15945874 | Msa0010540:intron |
| CCCAGAAGGTGTGAAGAGTT+GGG | 0.459787 | 1_1:-15945379 | Msa0010540:CDS |
| TCTTTGGGAACTTGTTGGAA+AGG | 0.462241 | 1_1:-15942616 | Msa0010540:CDS |
| CATGCCTCCATCTCATCTGA+AGG | 0.466025 | 1_1:-15944808 | Msa0010540:CDS |
| ATGAAATAAACTAATGATGA+TGG | 0.468415 | 1_1:+15946359 | None:intergenic |
| ATTAGTTTATTTCATTTCCA+TGG | 0.468915 | 1_1:-15946351 | Msa0010540:five_prime_UTR |
| AATGTTTAGCCTAATTTACT+AGG | 0.469005 | 1_1:+15946398 | None:intergenic |
| TGAAGAGTTGGGAAGGCAAA+CGG | 0.470682 | 1_1:-15945368 | Msa0010540:CDS |
| GGCTTAACAGTTTGTAGGGC+AGG | 0.471990 | 1_1:-15942830 | Msa0010540:CDS |
| GTCCAGGACCAGTTTCTCCA+TGG | 0.473521 | 1_1:-15945076 | Msa0010540:CDS |
| TCCAGGACCAGTTTCTCCAT+GGG | 0.475456 | 1_1:-15945075 | Msa0010540:CDS |
| GGTTCTTGACTTAATTAAAA+GGG | 0.477530 | 1_1:-15942595 | Msa0010540:exon |
| ACACTGAAGGGGAGAAAGAA+AGG | 0.477680 | 1_1:-15943869 | Msa0010540:CDS |
| TCAATGATGTTCATATCCAC+AGG | 0.481133 | 1_1:+15942746 | None:intergenic |
| ACTAATGATGATGGCCACTT+GGG | 0.485878 | 1_1:+15946368 | None:intergenic |
| TTATGAAGTCAAGGTCTGTC+AGG | 0.488033 | 1_1:+15946222 | None:intergenic |
| CGGGTTGGCATTCACTCCAT+TGG | 0.490248 | 1_1:-15945348 | Msa0010540:CDS |
| ACCCATGGAGAAACTGGTCC+TGG | 0.492418 | 1_1:+15945074 | None:intergenic |
| GTCTGAGATATCAGCTGTCC+TGG | 0.493937 | 1_1:-15945277 | Msa0010540:CDS |
| GTGTAGCCTTCTGTCCATAT+GGG | 0.494278 | 1_1:+15945041 | None:intergenic |
| ACATGTTATGATAGGGAAGA+TGG | 0.494611 | 1_1:+15942421 | None:intergenic |
| AAGCTCAACCACATCCTTCG+TGG | 0.501497 | 1_1:-15945120 | Msa0010540:CDS |
| TCACATTGACCATCACAGTC+TGG | 0.502894 | 1_1:+15942702 | None:intergenic |
| GACATTTGAAGTATATATGC+AGG | 0.503272 | 1_1:-15942317 | Msa0010540:three_prime_UTR |
| GAAGAGTTGGGAAGGCAAAC+GGG | 0.503318 | 1_1:-15945367 | Msa0010540:CDS |
| ATTCTTAGGAGTACTTCATC+AGG | 0.510626 | 1_1:-15943914 | Msa0010540:intron |
| TTCGATATTGGGCCTGAAAG+AGG | 0.510982 | 1_1:+15944945 | None:intergenic |
| CTCATTGGCCGGGACCGCCC+AGG | 0.512065 | 1_1:-15945306 | Msa0010540:CDS |
| TGAACATTTAAATAGGCTCT+AGG | 0.512518 | 1_1:-15945420 | Msa0010540:intron |
| TCGATATTGGGCCTGAAAGA+GGG | 0.514165 | 1_1:+15944946 | None:intergenic |
| CAGCCATTGAGCTCATTGGC+CGG | 0.516255 | 1_1:-15945317 | Msa0010540:CDS |
| ATGCATACCTGTGAAGCATA+AGG | 0.520785 | 1_1:+15944784 | None:intergenic |
| TGAAGGGCCTTATGCTTCAC+AGG | 0.521336 | 1_1:-15944791 | Msa0010540:intron |
| CACCAGAAACCTCTCGAGGA+TGG | 0.523676 | 1_1:-15942655 | Msa0010540:CDS |
| AAGTTGTTGTGTGTCAAACT+TGG | 0.534227 | 1_1:-15942508 | Msa0010540:three_prime_UTR |
| TTCTATGTGAGAGATGCATA+TGG | 0.536976 | 1_1:-15942773 | Msa0010540:CDS |
| TAAGTTGATGTAATATCGAA+TGG | 0.540041 | 1_1:-15946314 | Msa0010540:five_prime_UTR |
| TAGTGTGAGATGCAAAGATC+GGG | 0.541924 | 1_1:-15944887 | Msa0010540:CDS |
| GATGGTAGTTGGTTTATGGA+TGG | 0.543454 | 1_1:-15946176 | Msa0010540:intron |
| GATATCTCAGACAAAAGACC+TGG | 0.545024 | 1_1:+15945288 | None:intergenic |
| TACTTCATCAGGCACGTGGA+TGG | 0.545747 | 1_1:-15943903 | Msa0010540:CDS |
| GTGTCAACCATAGGAGAGAA+AGG | 0.546097 | 1_1:-15942806 | Msa0010540:CDS |
| ACCAGAAACCTCTCGAGGAT+GGG | 0.548981 | 1_1:-15942654 | Msa0010540:CDS |
| CCTCACATCCACGAAGGATG+TGG | 0.549263 | 1_1:+15945112 | None:intergenic |
| GAGTGTGTTGTATTTATACA+AGG | 0.552575 | 1_1:-15942345 | Msa0010540:three_prime_UTR |
| AGCCATTGAGCTCATTGGCC+GGG | 0.553592 | 1_1:-15945316 | Msa0010540:CDS |
| CAAATTACAATAATAAGATA+GGG | 0.554423 | 1_1:-15942239 | None:intergenic |
| GAACGGCTTAACAGTTTGTA+GGG | 0.558245 | 1_1:-15942834 | Msa0010540:CDS |
| GTCCCGGCCAATGAGCTCAA+TGG | 0.558624 | 1_1:+15945314 | None:intergenic |
| TAAATAGGCTCTAGGACCAA+AGG | 0.562311 | 1_1:-15945412 | Msa0010540:intron |
| AAGGGCCGCAAGAGCCCAGA+AGG | 0.562789 | 1_1:-15945393 | Msa0010540:CDS |
| GGATGCACACTTGACACTGA+AGG | 0.564728 | 1_1:-15943882 | Msa0010540:CDS |
| ATGCCTCCATCTCATCTGAA+GGG | 0.564762 | 1_1:-15944807 | Msa0010540:CDS |
| GCTTGCTGTCTGAAGTGACT+AGG | 0.566444 | 1_1:-15942868 | Msa0010540:CDS |
| TCACACCTTCTGGGCTCTTG+CGG | 0.569295 | 1_1:+15945388 | None:intergenic |
| AAATAGGCTCTAGGACCAAA+GGG | 0.571475 | 1_1:-15945411 | Msa0010540:intron |
| GAGATGGACATGTTATGATA+GGG | 0.574314 | 1_1:+15942414 | None:intergenic |
| CTTTGGTAATTATGAAGTCA+AGG | 0.574350 | 1_1:+15946213 | None:intergenic |
| TATCCTTTGCACACAGCTCA+AGG | 0.579485 | 1_1:+15942897 | None:intergenic |
| ATTAAGTAAGATACATGAGA+TGG | 0.580895 | 1_1:+15942398 | None:intergenic |
| GATGCACACTTGACACTGAA+GGG | 0.583904 | 1_1:-15943881 | Msa0010540:CDS |
| TACTCTAGCCCATCCTCGAG+AGG | 0.585301 | 1_1:+15942646 | None:intergenic |
| AATGGCTGTATGATCACCAA+TGG | 0.585858 | 1_1:+15945332 | None:intergenic |
| TTAGTGTGAGATGCAAAGAT+CGG | 0.586475 | 1_1:-15944888 | Msa0010540:CDS |
| AGGGCAGGTGTGTCAACCAT+AGG | 0.587010 | 1_1:-15942815 | Msa0010540:CDS |
| CCACATCCTTCGTGGATGTG+AGG | 0.591932 | 1_1:-15945112 | Msa0010540:CDS |
| AAAGCTTACATATCTTCTGA+TGG | 0.594595 | 1_1:-15946194 | Msa0010540:CDS |
| CCTTCTGTCCATATGGGTGA+AGG | 0.594675 | 1_1:+15945047 | None:intergenic |
| AGTTGGGAAGGCAAACGGGT+TGG | 0.597769 | 1_1:-15945363 | Msa0010540:CDS |
| CCTTCACCCATATGGACAGA+AGG | 0.598971 | 1_1:-15945047 | Msa0010540:CDS |
| CAATGATGTTCATATCCACA+GGG | 0.601090 | 1_1:+15942747 | None:intergenic |
| GAAGGTGTGAAGAGTTGGGA+AGG | 0.603934 | 1_1:-15945375 | Msa0010540:CDS |
| ATAAGGCCCTTCAGATGAGA+TGG | 0.605356 | 1_1:+15944801 | None:intergenic |
| GATAGGGATTATGAGAGTGC+TGG | 0.606196 | 1_1:-15945003 | Msa0010540:CDS |
| CACTGAAGGGGAGAAAGAAA+GGG | 0.607213 | 1_1:-15943868 | Msa0010540:CDS |
| ATGAACAGTATTTCATGTCA+CGG | 0.611220 | 1_1:-15945928 | Msa0010540:intron |
| TGTGATGGTCAATGTGAAGA+AGG | 0.612803 | 1_1:-15942696 | Msa0010540:CDS |
| ACTAGGATTCTACGAGAGAA+CGG | 0.613355 | 1_1:-15942851 | Msa0010540:CDS |
| AGAAATTGGCCAGACTGTGA+TGG | 0.614374 | 1_1:-15942711 | Msa0010540:CDS |
| AGGGATTATGAGAGTGCTGG+TGG | 0.616212 | 1_1:-15945000 | Msa0010540:CDS |
| TGTCTGCACTCTTACTGACA+TGG | 0.618144 | 1_1:-15944845 | Msa0010540:CDS |
| TTATCTACATGTGAAAACCA+TGG | 0.618696 | 1_1:+15946334 | None:intergenic |
| ATGGGTGAAGGTGAAACCCA+TGG | 0.621489 | 1_1:+15945059 | None:intergenic |
| TATTCAAAGAAGAGTAAGCG+AGG | 0.636120 | 1_1:-15943823 | Msa0010540:intron |
| AGGATGATGAGAATGTGTCC+AGG | 0.638867 | 1_1:-15945092 | Msa0010540:CDS |
| AGGCCCTTCAGATGAGATGG+AGG | 0.656278 | 1_1:+15944804 | None:intergenic |
| CTAATGATGATGGCCACTTG+GGG | 0.662992 | 1_1:+15946369 | None:intergenic |
| GGAGTACTTCATCAGGCACG+TGG | 0.663877 | 1_1:-15943907 | Msa0010540:CDS |
| TGATGCAACAAATCAAGCTG+TGG | 0.665196 | 1_1:-15945178 | Msa0010540:CDS |
| ATGCACACTTGACACTGAAG+GGG | 0.665219 | 1_1:-15943880 | Msa0010540:CDS |
| GAGCCTTGAGCTGTGTGCAA+AGG | 0.668681 | 1_1:-15942900 | Msa0010540:CDS |
| ATTGATAGCGTCAATAAACC+CGG | 0.669304 | 1_1:-15946269 | Msa0010540:CDS |
| TTTCATGTCACGGATCAGCA+AGG | 0.670024 | 1_1:-15945918 | Msa0010540:CDS |
| AAACATTAGGCTACCCCAAG+TGG | 0.670111 | 1_1:-15946382 | Msa0010540:five_prime_UTR |
| ATATCTCAGACAAAAGACCT+GGG | 0.673607 | 1_1:+15945289 | None:intergenic |
| CTGTGTGCAAAGGATAGAGT+GGG | 0.677348 | 1_1:-15942890 | Msa0010540:CDS |
| GCTGTGTGCAAAGGATAGAG+TGG | 0.682070 | 1_1:-15942891 | Msa0010540:CDS |
| ATATTGGGCCTGAAAGAGGG+AGG | 0.694567 | 1_1:+15944949 | None:intergenic |
| CATCATCCTCACATCCACGA+AGG | 0.702439 | 1_1:+15945106 | None:intergenic |
| AAAGCACCAGAAACCTCTCG+AGG | 0.723344 | 1_1:-15942659 | Msa0010540:CDS |
| AGATGCATATGGAAACCCTG+TGG | 0.774336 | 1_1:-15942762 | Msa0010540:CDS |
| TCTCAGACAAAAGACCTGGG+CGG | 0.775644 | 1_1:+15945292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTCCTAGTAAATT+AGG | - | chr1_1:15942253-15942272 | Msa0010540:three_prime_UTR | 15.0% |
| !! | TTGTTTGCTTAATTAAAATA+TGG | - | chr1_1:15942581-15942600 | Msa0010540:three_prime_UTR | 15.0% |
| !! | AGTAACTATAAAATAAAGAA+TGG | + | chr1_1:15943926-15943945 | None:intergenic | 15.0% |
| !!! | TTTACAGTAATATTTTGAAT+TGG | - | chr1_1:15943970-15943989 | Msa0010540:intron | 15.0% |
| !!! | TTGTTTTCAAATTTTTGTAT+AGG | + | chr1_1:15944180-15944199 | None:intergenic | 15.0% |
| !! | AAATTAATTGACAAAATTTG+AGG | - | chr1_1:15944677-15944696 | Msa0010540:intron | 15.0% |
| !! | ATAGAGATTAAAAATTGATA+AGG | + | chr1_1:15945389-15945408 | None:intergenic | 15.0% |
| !! | TCATTTAAAAATCACAAAAT+AGG | + | chr1_1:15946105-15946124 | None:intergenic | 15.0% |
| !! | ATGAAATAAACTAATGATGA+TGG | + | chr1_1:15942304-15942323 | None:intergenic | 20.0% |
| !!! | ATTAGTTTATTTCATTTCCA+TGG | - | chr1_1:15942309-15942328 | Msa0010540:three_prime_UTR | 20.0% |
| !!! | AATTATTGACTTCATTGAAA+AGG | - | chr1_1:15942786-15942805 | Msa0010540:CDS | 20.0% |
| !! | GAAAGAACAAAAATAAGAAT+TGG | + | chr1_1:15942930-15942949 | None:intergenic | 20.0% |
| !! | GTTAAATTAAAAGCAAACAA+AGG | + | chr1_1:15944308-15944327 | None:intergenic | 20.0% |
| !! | AGGTTCAAAATGTATTAATT+TGG | + | chr1_1:15945112-15945131 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTCATATTTTG+AGG | + | chr1_1:15945315-15945334 | None:intergenic | 20.0% |
| !!! | TAATTTTATTAGTTTTCGAC+AGG | - | chr1_1:15945426-15945445 | Msa0010540:intron | 20.0% |
| !! | TAGGGACTATAAATAATTAA+TGG | - | chr1_1:15945530-15945549 | Msa0010540:intron | 20.0% |
| !!! | ATTGTTTGGTTTAAAACAAA+AGG | + | chr1_1:15946196-15946215 | None:intergenic | 20.0% |
| ! | AATGTTTAGCCTAATTTACT+AGG | + | chr1_1:15942265-15942284 | None:intergenic | 25.0% |
| ! | AGTAAATTAGGCTAAACATT+AGG | - | chr1_1:15942265-15942284 | Msa0010540:three_prime_UTR | 25.0% |
| !!! | TAAGTTGATGTAATATCGAA+TGG | - | chr1_1:15942346-15942365 | Msa0010540:three_prime_UTR | 25.0% |
| ! | TTTGTTGCATATGCAAATAT+TGG | - | chr1_1:15942610-15942629 | Msa0010540:CDS | 25.0% |
| ! | TTGTTGCATATGCAAATATT+GGG | - | chr1_1:15942611-15942630 | Msa0010540:CDS | 25.0% |
| !! | TTAAAAGCATGTCAGATAAA+AGG | + | chr1_1:15942828-15942847 | None:intergenic | 25.0% |
| !! | GACATGCTTTTAATAAGATA+TGG | - | chr1_1:15942835-15942854 | Msa0010540:CDS | 25.0% |
| !! | TTGATATTTAGAGTCTGTTT+AGG | + | chr1_1:15943155-15943174 | None:intergenic | 25.0% |
| ! | AACAGACTCTAAATATCAAT+TGG | - | chr1_1:15943156-15943175 | Msa0010540:intron | 25.0% |
| ! | CTAGTTGTGAACATTTAAAT+AGG | - | chr1_1:15943233-15943252 | Msa0010540:intron | 25.0% |
| ! | ATACGTTCTATTTCGATATT+GGG | + | chr1_1:15943729-15943748 | None:intergenic | 25.0% |
| ! | AATACGTTCTATTTCGATAT+TGG | + | chr1_1:15943730-15943749 | None:intergenic | 25.0% |
| ! | ATAGAACGTATTGAAGAAAA+AGG | - | chr1_1:15943738-15943757 | Msa0010540:intron | 25.0% |
| !!! | GTCTGAATTTTCTGAAAAAT+AGG | - | chr1_1:15944035-15944054 | Msa0010540:intron | 25.0% |
| ! | AATTTCTTTATTCCTTCCTT+TGG | + | chr1_1:15944099-15944118 | None:intergenic | 25.0% |
| ! | TTGTTCTTGTAAAAAGACTA+AGG | - | chr1_1:15944126-15944145 | Msa0010540:intron | 25.0% |
| ! | TGTTCTTGTAAAAAGACTAA+GGG | - | chr1_1:15944127-15944146 | Msa0010540:intron | 25.0% |
| ! | AAAACCTAAAAACAAGATGA+GGG | - | chr1_1:15944202-15944221 | Msa0010540:intron | 25.0% |
| !! | TTTTGCAATTAAAACGGAAA+AGG | - | chr1_1:15944225-15944244 | Msa0010540:intron | 25.0% |
| !! | ATTTTATAGCTACTCTAGTT+TGG | - | chr1_1:15944361-15944380 | Msa0010540:intron | 25.0% |
| !! | TATGTTTGAAGTATGTAGTA+AGG | - | chr1_1:15944617-15944636 | Msa0010540:intron | 25.0% |
| !! | ATGTTTGAAGTATGTAGTAA+GGG | - | chr1_1:15944618-15944637 | Msa0010540:intron | 25.0% |
| ! | AACCATTACTAAAATAGACA+AGG | - | chr1_1:15944897-15944916 | Msa0010540:CDS | 25.0% |
| !!! | ATCCTTGTCTATTTTAGTAA+TGG | + | chr1_1:15944902-15944921 | None:intergenic | 25.0% |
| !!! | CTTCATATTTTGAGGTTATA+GGG | + | chr1_1:15945307-15945326 | None:intergenic | 25.0% |
| !! | TAGACAGTCATGATTTTATA+AGG | + | chr1_1:15945358-15945377 | None:intergenic | 25.0% |
| !!! | GGTAAAAGTTTTATAGACTA+AGG | - | chr1_1:15945488-15945507 | Msa0010540:intron | 25.0% |
| !! | TTAAACTATCGTGATTTTGT+AGG | - | chr1_1:15945511-15945530 | Msa0010540:intron | 25.0% |
| !! | TAAACTATCGTGATTTTGTA+GGG | - | chr1_1:15945512-15945531 | Msa0010540:intron | 25.0% |
| ! | ATAATAATATGCATGATAGC+TGG | + | chr1_1:15945604-15945623 | None:intergenic | 25.0% |
| ! | AGGTTCTTGACTTAATTAAA+AGG | - | chr1_1:15946064-15946083 | Msa0010540:intron | 25.0% |
| ! | GGTTCTTGACTTAATTAAAA+GGG | - | chr1_1:15946065-15946084 | Msa0010540:intron | 25.0% |
| ! | ATTAAGTAAGATACATGAGA+TGG | + | chr1_1:15946265-15946284 | None:intergenic | 25.0% |
| TTATCTACATGTGAAAACCA+TGG | + | chr1_1:15942329-15942348 | None:intergenic | 30.0% | |
| ! | CTTTGGTAATTATGAAGTCA+AGG | + | chr1_1:15942450-15942469 | None:intergenic | 30.0% |
| ATCAGAAGATATGTAAGCTT+TGG | + | chr1_1:15942467-15942486 | None:intergenic | 30.0% | |
| AAAGCTTACATATCTTCTGA+TGG | - | chr1_1:15942466-15942485 | Msa0010540:three_prime_UTR | 30.0% | |
| ATGAACAGTATTTCATGTCA+CGG | - | chr1_1:15942732-15942751 | Msa0010540:CDS | 30.0% | |
| !! | AGTAGGCTTTATCTTTGTTT+TGG | - | chr1_1:15942871-15942890 | Msa0010540:CDS | 30.0% |
| GGAAAAGAAACCTAAGTATA+TGG | - | chr1_1:15942892-15942911 | Msa0010540:CDS | 30.0% | |
| AATCATGCTACCATATACTT+AGG | + | chr1_1:15942905-15942924 | None:intergenic | 30.0% | |
| TGTAATGCACTTATGATCTT+TGG | - | chr1_1:15943009-15943028 | Msa0010540:intron | 30.0% | |
| CAGAATTTATAAACACAGCT+AGG | - | chr1_1:15943033-15943052 | Msa0010540:intron | 30.0% | |
| ! | TTCACAACTAGTTGATACAA+GGG | + | chr1_1:15943224-15943243 | None:intergenic | 30.0% |
| TGAACATTTAAATAGGCTCT+AGG | - | chr1_1:15943240-15943259 | Msa0010540:intron | 30.0% | |
| TTGTTGCATCATTGACATAA+AGG | + | chr1_1:15943473-15943492 | None:intergenic | 30.0% | |
| TAGGAAACAAAAATATTGCG+AGG | - | chr1_1:15944054-15944073 | Msa0010540:intron | 30.0% | |
| CAAAACCTAAAAACAAGATG+AGG | - | chr1_1:15944201-15944220 | Msa0010540:intron | 30.0% | |
| !!! | AAAACCCTCATCTTGTTTTT+AGG | + | chr1_1:15944209-15944228 | None:intergenic | 30.0% |
| ! | TGAGGGTTTTGCAATTAAAA+CGG | - | chr1_1:15944219-15944238 | Msa0010540:intron | 30.0% |
| GATCAAAACATTAGGGTTTA+TGG | + | chr1_1:15944274-15944293 | None:intergenic | 30.0% | |
| GTTCAAGGATCAAAACATTA+GGG | + | chr1_1:15944281-15944300 | None:intergenic | 30.0% | |
| TGTTCAAGGATCAAAACATT+AGG | + | chr1_1:15944282-15944301 | None:intergenic | 30.0% | |
| TTAACACTTGTGAAACTGTT+TGG | - | chr1_1:15944413-15944432 | Msa0010540:intron | 30.0% | |
| TAACACTTGTGAAACTGTTT+GGG | - | chr1_1:15944414-15944433 | Msa0010540:intron | 30.0% | |
| GTTGTTCTCATAAACTATCT+TGG | + | chr1_1:15944504-15944523 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTTATCCCAAC+AGG | - | chr1_1:15944585-15944604 | Msa0010540:intron | 30.0% |
| ! | TTAAGTTGTTTATCCCAACA+GGG | - | chr1_1:15944586-15944605 | Msa0010540:intron | 30.0% |
| ! | TTTGAGGTAGAATGACAAAA+TGG | - | chr1_1:15944693-15944712 | Msa0010540:intron | 30.0% |
| TTGTTGATGTGGTAATTCTT+AGG | - | chr1_1:15944732-15944751 | Msa0010540:intron | 30.0% | |
| AAGTCTTTCATGCTCTATTA+TGG | - | chr1_1:15944950-15944969 | Msa0010540:CDS | 30.0% | |
| TAGTGACTTAATGTTTCTCT+TGG | - | chr1_1:15944981-15945000 | Msa0010540:CDS | 30.0% | |
| AAGAACACATATGAAGCTAT+GGG | + | chr1_1:15945016-15945035 | None:intergenic | 30.0% | |
| GATTTGAATGATATTACGTG+TGG | + | chr1_1:15945285-15945304 | None:intergenic | 30.0% | |
| !!! | CCTTCATATTTTGAGGTTAT+AGG | + | chr1_1:15945308-15945327 | None:intergenic | 30.0% |
| CCTATAACCTCAAAATATGA+AGG | - | chr1_1:15945305-15945324 | Msa0010540:CDS | 30.0% | |
| CCTGTAAGATATAAAAACTG+TGG | + | chr1_1:15945459-15945478 | None:intergenic | 30.0% | |
| ! | CCACAGTTTTTATATCTTAC+AGG | - | chr1_1:15945456-15945475 | Msa0010540:intron | 30.0% |
| ATATCTTACAGGACTATAGA+TGG | - | chr1_1:15945467-15945486 | Msa0010540:intron | 30.0% | |
| ! | AACATCTTACAAGCATTGTT+TGG | + | chr1_1:15946210-15946229 | None:intergenic | 30.0% |
| GAGTGTGTTGTATTTATACA+AGG | - | chr1_1:15946315-15946334 | Msa0010540:five_prime_UTR | 30.0% | |
| ! | GACATTTGAAGTATATATGC+AGG | - | chr1_1:15946343-15946362 | Msa0010540:five_prime_UTR | 30.0% |
| !! | ATTGATAGCGTCAATAAACC+CGG | - | chr1_1:15942391-15942410 | Msa0010540:three_prime_UTR | 35.0% |
| ACATATCTTCTGATGGTAGT+TGG | - | chr1_1:15942473-15942492 | Msa0010540:three_prime_UTR | 35.0% | |
| ! | TTCTGATGGTAGTTGGTTTA+TGG | - | chr1_1:15942480-15942499 | Msa0010540:three_prime_UTR | 35.0% |
| ! | ATGGTAGCAATGCTTTTAGT+AGG | - | chr1_1:15942854-15942873 | Msa0010540:CDS | 35.0% |
| AGTGCATTACACACTCAAAA+GGG | + | chr1_1:15943000-15943019 | None:intergenic | 35.0% | |
| AAGTGCATTACACACTCAAA+AGG | + | chr1_1:15943001-15943020 | None:intergenic | 35.0% | |
| ACTATGAACACTATCAGCAA+GGG | + | chr1_1:15943082-15943101 | None:intergenic | 35.0% | |
| AACTATGAACACTATCAGCA+AGG | + | chr1_1:15943083-15943102 | None:intergenic | 35.0% | |
| AGTCTGTTTAGGAAATAGCA+GGG | + | chr1_1:15943144-15943163 | None:intergenic | 35.0% | |
| ! | GTTCACAACTAGTTGATACA+AGG | + | chr1_1:15943225-15943244 | None:intergenic | 35.0% |
| ATATCTCAGACAAAAGACCT+GGG | + | chr1_1:15943374-15943393 | None:intergenic | 35.0% | |
| ! | ACCAAATGTTGTTTGCTGAT+AGG | - | chr1_1:15943640-15943659 | Msa0010540:intron | 35.0% |
| ! | CCAAATGTTGTTTGCTGATA+GGG | - | chr1_1:15943641-15943660 | Msa0010540:intron | 35.0% |
| TTAGTGTGAGATGCAAAGAT+CGG | - | chr1_1:15943772-15943791 | Msa0010540:intron | 35.0% | |
| TCTTGTAAGCCAAATCCATA+GGG | - | chr1_1:15943993-15944012 | Msa0010540:intron | 35.0% | |
| TGTTTACAAACTACACCCTA+TGG | + | chr1_1:15944011-15944030 | None:intergenic | 35.0% | |
| !!! | GAGGAATTTTTTAGTTCAGC+TGG | - | chr1_1:15944073-15944092 | Msa0010540:intron | 35.0% |
| ! | ATAGCTACTCTAGTTTGGAT+TGG | - | chr1_1:15944366-15944385 | Msa0010540:intron | 35.0% |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr1_1:15944388-15944407 | Msa0010540:intron | 35.0% | |
| TCTCATAAACTATCTTGGAG+AGG | + | chr1_1:15944499-15944518 | None:intergenic | 35.0% | |
| ACATAGTATTAGTCCCTGTT+GGG | + | chr1_1:15944602-15944621 | None:intergenic | 35.0% | |
| AACATAGTATTAGTCCCTGT+TGG | + | chr1_1:15944603-15944622 | None:intergenic | 35.0% | |
| ! | TTTGAAGTATGTAGTAAGGG+AGG | - | chr1_1:15944621-15944640 | Msa0010540:intron | 35.0% |
| TGTAGACTAAGTTGTTGATG+TGG | - | chr1_1:15944721-15944740 | Msa0010540:intron | 35.0% | |
| !! | ATTCTTAGGAGTACTTCATC+AGG | - | chr1_1:15944746-15944765 | Msa0010540:intron | 35.0% |
| TATTCAAAGAAGAGTAAGCG+AGG | - | chr1_1:15944837-15944856 | Msa0010540:CDS | 35.0% | |
| AATAGACAAGGATGAACTTC+TGG | - | chr1_1:15944909-15944928 | Msa0010540:CDS | 35.0% | |
| TCATGCTCTATTATGGAACT+TGG | - | chr1_1:15944957-15944976 | Msa0010540:CDS | 35.0% | |
| AGAACACATATGAAGCTATG+GGG | + | chr1_1:15945015-15945034 | None:intergenic | 35.0% | |
| GAAGAACACATATGAAGCTA+TGG | + | chr1_1:15945017-15945036 | None:intergenic | 35.0% | |
| !! | TTGTTTTGTTGCGAATGGTA+CGG | - | chr1_1:15945144-15945163 | Msa0010540:CDS | 35.0% |
| AATGGTACGGTATACATACA+TGG | - | chr1_1:15945157-15945176 | Msa0010540:CDS | 35.0% | |
| TCGAGCATAAATATGACTGA+TGG | + | chr1_1:15945581-15945600 | None:intergenic | 35.0% | |
| ATTTAGTCCTTTCTCTCCTA+TGG | + | chr1_1:15945864-15945883 | None:intergenic | 35.0% | |
| TTCTATGTGAGAGATGCATA+TGG | - | chr1_1:15945887-15945906 | Msa0010540:CDS | 35.0% | |
| CAATGATGTTCATATCCACA+GGG | + | chr1_1:15945916-15945935 | None:intergenic | 35.0% | |
| TCAATGATGTTCATATCCAC+AGG | + | chr1_1:15945917-15945936 | None:intergenic | 35.0% | |
| CTAGAGTAAGCTTCTTCTTT+GGG | - | chr1_1:15946029-15946048 | Msa0010540:intron | 35.0% | |
| AAGTTGTTGTGTGTCAAACT+TGG | - | chr1_1:15946152-15946171 | Msa0010540:intron | 35.0% | |
| ACATGTTATGATAGGGAAGA+TGG | + | chr1_1:15946242-15946261 | None:intergenic | 35.0% | |
| GAGATGGACATGTTATGATA+GGG | + | chr1_1:15946249-15946268 | None:intergenic | 35.0% | |
| TGAGATGGACATGTTATGAT+AGG | + | chr1_1:15946250-15946269 | None:intergenic | 35.0% | |
| !! | ACTAATGATGATGGCCACTT+GGG | + | chr1_1:15942295-15942314 | None:intergenic | 40.0% |
| !! | AACTAATGATGATGGCCACT+TGG | + | chr1_1:15942296-15942315 | None:intergenic | 40.0% |
| TTATGAAGTCAAGGTCTGTC+AGG | + | chr1_1:15942441-15942460 | None:intergenic | 40.0% | |
| ! | GATGGTAGTTGGTTTATGGA+TGG | - | chr1_1:15942484-15942503 | Msa0010540:three_prime_UTR | 40.0% |
| GAATGTGTATGTTGTAGGCA+AGG | + | chr1_1:15942650-15942669 | None:intergenic | 40.0% | |
| AGCACGAATGTGTATGTTGT+AGG | + | chr1_1:15942655-15942674 | None:intergenic | 40.0% | |
| GTGCATTACACACTCAAAAG+GGG | + | chr1_1:15942999-15943018 | None:intergenic | 40.0% | |
| AAGGGAATTTCTACCGTGTT+TGG | + | chr1_1:15943064-15943083 | None:intergenic | 40.0% | |
| GAGTCTGTTTAGGAAATAGC+AGG | + | chr1_1:15943145-15943164 | None:intergenic | 40.0% | |
| !! | TAAATAGGCTCTAGGACCAA+AGG | - | chr1_1:15943248-15943267 | Msa0010540:intron | 40.0% |
| !! | AAATAGGCTCTAGGACCAAA+GGG | - | chr1_1:15943249-15943268 | Msa0010540:intron | 40.0% |
| AATGGCTGTATGATCACCAA+TGG | + | chr1_1:15943331-15943350 | None:intergenic | 40.0% | |
| GATATCTCAGACAAAAGACC+TGG | + | chr1_1:15943375-15943394 | None:intergenic | 40.0% | |
| CAGCTGCAATCACATTGAAT+TGG | + | chr1_1:15943416-15943435 | None:intergenic | 40.0% | |
| ATGTGATTGCAGCTGAAGTT+TGG | - | chr1_1:15943421-15943440 | Msa0010540:intron | 40.0% | |
| CTGAAGTTTGGACTCATAAC+AGG | - | chr1_1:15943433-15943452 | Msa0010540:intron | 40.0% | |
| TGATGCAACAAATCAAGCTG+TGG | - | chr1_1:15943482-15943501 | Msa0010540:intron | 40.0% | |
| CCCTATCAGCAAACAACATT+TGG | + | chr1_1:15943644-15943663 | None:intergenic | 40.0% | |
| TGAAGAAAAAGGCTACTCAG+TGG | - | chr1_1:15943749-15943768 | Msa0010540:intron | 40.0% | |
| TAGTGTGAGATGCAAAGATC+GGG | - | chr1_1:15943773-15943792 | Msa0010540:intron | 40.0% | |
| ATGCATACCTGTGAAGCATA+AGG | + | chr1_1:15943879-15943898 | None:intergenic | 40.0% | |
| GTCTTGTAAGCCAAATCCAT+AGG | - | chr1_1:15943992-15944011 | Msa0010540:intron | 40.0% | |
| CAAACTACACCCTATGGATT+TGG | + | chr1_1:15944005-15944024 | None:intergenic | 40.0% | |
| !!! | TTTTTAGTTCAGCTGGCCAA+AGG | - | chr1_1:15944080-15944099 | Msa0010540:intron | 40.0% |
| GCAAACAAAGGATGTGTTCA+AGG | + | chr1_1:15944296-15944315 | None:intergenic | 40.0% | |
| !!! | TCTGCTTGTTTTGTTGCGAA+TGG | - | chr1_1:15945139-15945158 | Msa0010540:CDS | 40.0% |
| ATGGTCAGATACAATCTGAG+TGG | + | chr1_1:15945192-15945211 | None:intergenic | 40.0% | |
| CATCGTATCCACCAATGAAT+CGG | - | chr1_1:15945209-15945228 | Msa0010540:CDS | 40.0% | |
| GATATTACGTGTGGAGCATA+AGG | + | chr1_1:15945276-15945295 | None:intergenic | 40.0% | |
| ACTAGGATTCTACGAGAGAA+CGG | - | chr1_1:15945809-15945828 | Msa0010540:intron | 40.0% | |
| AGAACGGCTTAACAGTTTGT+AGG | - | chr1_1:15945825-15945844 | Msa0010540:intron | 40.0% | |
| GAACGGCTTAACAGTTTGTA+GGG | - | chr1_1:15945826-15945845 | Msa0010540:intron | 40.0% | |
| !! | GAAGCACTGCGTAAAGAAAT+TGG | - | chr1_1:15945935-15945954 | Msa0010540:intron | 40.0% |
| TGTGATGGTCAATGTGAAGA+AGG | - | chr1_1:15945964-15945983 | Msa0010540:intron | 40.0% | |
| GCTAGAGTAAGCTTCTTCTT+TGG | - | chr1_1:15946028-15946047 | Msa0010540:intron | 40.0% | |
| ! | CTTCTTCTTTGGGAACTTGT+TGG | - | chr1_1:15946039-15946058 | Msa0010540:intron | 40.0% |
| !! | TCTTTGGGAACTTGTTGGAA+AGG | - | chr1_1:15946044-15946063 | Msa0010540:intron | 40.0% |
| AAACATTAGGCTACCCCAAG+TGG | - | chr1_1:15942278-15942297 | Msa0010540:three_prime_UTR | 45.0% | |
| !! | CTAATGATGATGGCCACTTG+GGG | + | chr1_1:15942294-15942313 | None:intergenic | 45.0% |
| CAATAAACCCGGAATTCTGC+TGG | - | chr1_1:15942402-15942421 | Msa0010540:three_prime_UTR | 45.0% | |
| TGTTGTAGGCAAGGTTTGCA+TGG | + | chr1_1:15942641-15942660 | None:intergenic | 45.0% | |
| TTTCATGTCACGGATCAGCA+AGG | - | chr1_1:15942742-15942761 | Msa0010540:CDS | 45.0% | |
| TACACACTCAAAAGGGGAGA+CGG | + | chr1_1:15942993-15943012 | None:intergenic | 45.0% | |
| CAGCTAGGAACATCCAAACA+CGG | - | chr1_1:15943048-15943067 | Msa0010540:intron | 45.0% | |
| ATAGCAGGGTAGATACTAGC+AGG | + | chr1_1:15943130-15943149 | None:intergenic | 45.0% | |
| TGAAGAGTTGGGAAGGCAAA+CGG | - | chr1_1:15943292-15943311 | Msa0010540:intron | 45.0% | |
| CATACAGCCATTGAGCTCAT+TGG | - | chr1_1:15943339-15943358 | Msa0010540:intron | 45.0% | |
| AGGATGATGAGAATGTGTCC+AGG | - | chr1_1:15943568-15943587 | Msa0010540:intron | 45.0% | |
| GTGTAGCCTTCTGTCCATAT+GGG | + | chr1_1:15943622-15943641 | None:intergenic | 45.0% | |
| ! | GATAGGGATTATGAGAGTGC+TGG | - | chr1_1:15943657-15943676 | Msa0010540:intron | 45.0% |
| TTGATTCTCCTCCCTCTTTC+AGG | - | chr1_1:15943703-15943722 | Msa0010540:intron | 45.0% | |
| TCGATATTGGGCCTGAAAGA+GGG | + | chr1_1:15943717-15943736 | None:intergenic | 45.0% | |
| TTCGATATTGGGCCTGAAAG+AGG | + | chr1_1:15943718-15943737 | None:intergenic | 45.0% | |
| TGTCTGCACTCTTACTGACA+TGG | - | chr1_1:15943815-15943834 | Msa0010540:intron | 45.0% | |
| ATGCCTCCATCTCATCTGAA+GGG | - | chr1_1:15943853-15943872 | Msa0010540:CDS | 45.0% | |
| ATAAGGCCCTTCAGATGAGA+TGG | + | chr1_1:15943862-15943881 | None:intergenic | 45.0% | |
| GATGCACACTTGACACTGAA+GGG | - | chr1_1:15944779-15944798 | Msa0010540:intron | 45.0% | |
| ATGCACACTTGACACTGAAG+GGG | - | chr1_1:15944780-15944799 | Msa0010540:intron | 45.0% | |
| ACACTGAAGGGGAGAAAGAA+AGG | - | chr1_1:15944791-15944810 | Msa0010540:intron | 45.0% | |
| CACTGAAGGGGAGAAAGAAA+GGG | - | chr1_1:15944792-15944811 | Msa0010540:CDS | 45.0% | |
| CAAAACAAGCAGATAGCTGC+AGG | + | chr1_1:15945132-15945151 | None:intergenic | 45.0% | |
| ! | CGATTCATTGGTGGATACGA+TGG | + | chr1_1:15945211-15945230 | None:intergenic | 45.0% |
| ATCCACCAATGAATCGGTGA+CGG | - | chr1_1:15945215-15945234 | Msa0010540:CDS | 45.0% | |
| !! | ATCAACCGTCACCGATTCAT+TGG | + | chr1_1:15945223-15945242 | None:intergenic | 45.0% |
| ! | AATGAATCGGTGACGGTTGA+TGG | - | chr1_1:15945222-15945241 | Msa0010540:CDS | 45.0% |
| TGTCGTTACCATTGATCCTC+TGG | - | chr1_1:15945719-15945738 | Msa0010540:intron | 45.0% | |
| GTCGTTACCATTGATCCTCT+GGG | - | chr1_1:15945720-15945739 | Msa0010540:intron | 45.0% | |
| TATCCTTTGCACACAGCTCA+AGG | + | chr1_1:15945766-15945785 | None:intergenic | 45.0% | |
| CTGTGTGCAAAGGATAGAGT+GGG | - | chr1_1:15945770-15945789 | Msa0010540:intron | 45.0% | |
| GTGTCAACCATAGGAGAGAA+AGG | - | chr1_1:15945854-15945873 | Msa0010540:intron | 45.0% | |
| AGATGCATATGGAAACCCTG+TGG | - | chr1_1:15945898-15945917 | Msa0010540:CDS | 45.0% | |
| AGAAATTGGCCAGACTGTGA+TGG | - | chr1_1:15945949-15945968 | Msa0010540:intron | 45.0% | |
| TCACATTGACCATCACAGTC+TGG | + | chr1_1:15945961-15945980 | None:intergenic | 45.0% | |
| ACTTGGACAGTGCTTGAACT+TGG | - | chr1_1:15946169-15946188 | Msa0010540:intron | 45.0% | |
| ACGACTTCCAGCAGAATTCC+GGG | + | chr1_1:15942412-15942431 | None:intergenic | 50.0% | |
| CACGACTTCCAGCAGAATTC+CGG | + | chr1_1:15942413-15942432 | None:intergenic | 50.0% | |
| AGACGGGCATAGTGCTTAAC+TGG | + | chr1_1:15942976-15942995 | None:intergenic | 50.0% | |
| ACACACTCAAAAGGGGAGAC+GGG | + | chr1_1:15942992-15943011 | None:intergenic | 50.0% | |
| CCCAACTCTTCACACCTTCT+GGG | + | chr1_1:15943284-15943303 | None:intergenic | 50.0% | |
| ! | CCCAGAAGGTGTGAAGAGTT+GGG | - | chr1_1:15943281-15943300 | Msa0010540:intron | 50.0% |
| TCCCAACTCTTCACACCTTC+TGG | + | chr1_1:15943285-15943304 | None:intergenic | 50.0% | |
| ! | GAAGGTGTGAAGAGTTGGGA+AGG | - | chr1_1:15943285-15943304 | Msa0010540:intron | 50.0% |
| GAAGAGTTGGGAAGGCAAAC+GGG | - | chr1_1:15943293-15943312 | Msa0010540:intron | 50.0% | |
| TCTCAGACAAAAGACCTGGG+CGG | + | chr1_1:15943371-15943390 | None:intergenic | 50.0% | |
| ! | GTCTGAGATATCAGCTGTCC+TGG | - | chr1_1:15943383-15943402 | Msa0010540:intron | 50.0% |
| CATTGAATTGGAAGCTCGCC+AGG | + | chr1_1:15943404-15943423 | None:intergenic | 50.0% | |
| AAGCTCAACCACATCCTTCG+TGG | - | chr1_1:15943540-15943559 | Msa0010540:intron | 50.0% | |
| CATCATCCTCACATCCACGA+AGG | + | chr1_1:15943557-15943576 | None:intergenic | 50.0% | |
| TCCAGGACCAGTTTCTCCAT+GGG | - | chr1_1:15943585-15943604 | Msa0010540:intron | 50.0% | |
| GGTGAAACCCATGGAGAAAC+TGG | + | chr1_1:15943595-15943614 | None:intergenic | 50.0% | |
| ATGGGTGAAGGTGAAACCCA+TGG | + | chr1_1:15943604-15943623 | None:intergenic | 50.0% | |
| GGGTTTCACCTTCACCCATA+TGG | - | chr1_1:15943605-15943624 | Msa0010540:intron | 50.0% | |
| CCTTCTGTCCATATGGGTGA+AGG | + | chr1_1:15943616-15943635 | None:intergenic | 50.0% | |
| CCTTCACCCATATGGACAGA+AGG | - | chr1_1:15943613-15943632 | Msa0010540:intron | 50.0% | |
| GGTGTAGCCTTCTGTCCATA+TGG | + | chr1_1:15943623-15943642 | None:intergenic | 50.0% | |
| !! | AGGGATTATGAGAGTGCTGG+TGG | - | chr1_1:15943660-15943679 | Msa0010540:intron | 50.0% |
| ATATTGGGCCTGAAAGAGGG+AGG | + | chr1_1:15943714-15943733 | None:intergenic | 50.0% | |
| CATGCCTCCATCTCATCTGA+AGG | - | chr1_1:15943852-15943871 | Msa0010540:CDS | 50.0% | |
| ! | TGAAGGGCCTTATGCTTCAC+AGG | - | chr1_1:15943869-15943888 | Msa0010540:CDS | 50.0% |
| TAGTTCAGCTGGCCAAAGGA+AGG | - | chr1_1:15944084-15944103 | Msa0010540:intron | 50.0% | |
| TACTTCATCAGGCACGTGGA+TGG | - | chr1_1:15944757-15944776 | Msa0010540:intron | 50.0% | |
| GGATGCACACTTGACACTGA+AGG | - | chr1_1:15944778-15944797 | Msa0010540:intron | 50.0% | |
| !! | AACCGTCACCGATTCATTGG+TGG | + | chr1_1:15945220-15945239 | None:intergenic | 50.0% |
| ACCATTGATCCTCTGGGTGA+TGG | - | chr1_1:15945726-15945745 | Msa0010540:intron | 50.0% | |
| TCCATCACCCAGAGGATCAA+TGG | + | chr1_1:15945730-15945749 | None:intergenic | 50.0% | |
| GCTGTGTGCAAAGGATAGAG+TGG | - | chr1_1:15945769-15945788 | Msa0010540:intron | 50.0% | |
| !! | GCTTGCTGTCTGAAGTGACT+AGG | - | chr1_1:15945792-15945811 | Msa0010540:intron | 50.0% |
| GGCTTAACAGTTTGTAGGGC+AGG | - | chr1_1:15945830-15945849 | Msa0010540:intron | 50.0% | |
| !! | GGTTTCTGGTGCTTTGGTGT+TGG | + | chr1_1:15945996-15946015 | None:intergenic | 50.0% |
| !! | TCGAGAGGTTTCTGGTGCTT+TGG | + | chr1_1:15946002-15946021 | None:intergenic | 50.0% |
| ! | AAAGCACCAGAAACCTCTCG+AGG | - | chr1_1:15946001-15946020 | Msa0010540:intron | 50.0% |
| ACCAGAAACCTCTCGAGGAT+GGG | - | chr1_1:15946006-15946025 | Msa0010540:intron | 50.0% | |
| TCACACCTTCTGGGCTCTTG+CGG | + | chr1_1:15943275-15943294 | None:intergenic | 55.0% | |
| ! | GCCCAGAAGGTGTGAAGAGT+TGG | - | chr1_1:15943280-15943299 | Msa0010540:intron | 55.0% |
| AGTTGGGAAGGCAAACGGGT+TGG | - | chr1_1:15943297-15943316 | Msa0010540:intron | 55.0% | |
| !! | CGGGTTGGCATTCACTCCAT+TGG | - | chr1_1:15943312-15943331 | Msa0010540:intron | 55.0% |
| CAGCCATTGAGCTCATTGGC+CGG | - | chr1_1:15943343-15943362 | Msa0010540:intron | 55.0% | |
| AGCCATTGAGCTCATTGGCC+GGG | - | chr1_1:15943344-15943363 | Msa0010540:intron | 55.0% | |
| CCTCACATCCACGAAGGATG+TGG | + | chr1_1:15943551-15943570 | None:intergenic | 55.0% | |
| CCACATCCTTCGTGGATGTG+AGG | - | chr1_1:15943548-15943567 | Msa0010540:intron | 55.0% | |
| GTCCAGGACCAGTTTCTCCA+TGG | - | chr1_1:15943584-15943603 | Msa0010540:intron | 55.0% | |
| ACCCATGGAGAAACTGGTCC+TGG | + | chr1_1:15943589-15943608 | None:intergenic | 55.0% | |
| AGGCCCTTCAGATGAGATGG+AGG | + | chr1_1:15943859-15943878 | None:intergenic | 55.0% | |
| ! | GGAGTACTTCATCAGGCACG+TGG | - | chr1_1:15944753-15944772 | Msa0010540:intron | 55.0% |
| !! | ATCCTCTGGGTGATGGACAC+AGG | - | chr1_1:15945733-15945752 | Msa0010540:intron | 55.0% |
| !! | TCCTCTGGGTGATGGACACA+GGG | - | chr1_1:15945734-15945753 | Msa0010540:intron | 55.0% |
| GAGCCTTGAGCTGTGTGCAA+AGG | - | chr1_1:15945760-15945779 | Msa0010540:intron | 55.0% | |
| AGGGCAGGTGTGTCAACCAT+AGG | - | chr1_1:15945845-15945864 | Msa0010540:intron | 55.0% | |
| !! | TCTGGTGCTTTGGTGTTGGC+TGG | + | chr1_1:15945992-15946011 | None:intergenic | 55.0% |
| CACCAGAAACCTCTCGAGGA+TGG | - | chr1_1:15946005-15946024 | Msa0010540:intron | 55.0% | |
| TACTCTAGCCCATCCTCGAG+AGG | + | chr1_1:15946017-15946036 | None:intergenic | 55.0% | |
| GTCCCGGCCAATGAGCTCAA+TGG | + | chr1_1:15943349-15943368 | None:intergenic | 60.0% | |
| ACAAAAGACCTGGGCGGTCC+CGG | + | chr1_1:15943365-15943384 | None:intergenic | 60.0% | |
| ACCCTGTGTCCATCACCCAG+AGG | + | chr1_1:15945738-15945757 | None:intergenic | 60.0% | |
| GCCCATCCTCGAGAGGTTTC+TGG | + | chr1_1:15946010-15946029 | None:intergenic | 60.0% | |
| TCTGGGCTCTTGCGGCCCTT+TGG | + | chr1_1:15943267-15943286 | None:intergenic | 65.0% | |
| AAGGGCCGCAAGAGCCCAGA+AGG | - | chr1_1:15943267-15943286 | Msa0010540:intron | 65.0% | |
| CTCATTGGCCGGGACCGCCC+AGG | - | chr1_1:15943354-15943373 | Msa0010540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 15942240 | 15946442 | 15942240 | ID=Msa0010540;Name=Msa0010540 |
| chr1_1 | mRNA | 15942240 | 15946442 | 15942240 | ID=Msa0010540-mRNA-1;Parent=Msa0010540;Name=Msa0010540-mRNA-1;_AED=0.22;_eAED=0.22;_QI=145|1|1|1|1|1|5|364|417 |
| chr1_1 | exon | 15942240 | 15942927 | 15942240 | ID=Msa0010540-mRNA-1:exon:5795;Parent=Msa0010540-mRNA-1 |
| chr1_1 | exon | 15943824 | 15943928 | 15943824 | ID=Msa0010540-mRNA-1:exon:5794;Parent=Msa0010540-mRNA-1 |
| chr1_1 | exon | 15944792 | 15945427 | 15944792 | ID=Msa0010540-mRNA-1:exon:5793;Parent=Msa0010540-mRNA-1 |
| chr1_1 | exon | 15945875 | 15945942 | 15945875 | ID=Msa0010540-mRNA-1:exon:5792;Parent=Msa0010540-mRNA-1 |
| chr1_1 | exon | 15946177 | 15946442 | 15946177 | ID=Msa0010540-mRNA-1:exon:5791;Parent=Msa0010540-mRNA-1 |
| chr1_1 | five_prime_UTR | 15946298 | 15946442 | 15946298 | ID=Msa0010540-mRNA-1:five_prime_utr;Parent=Msa0010540-mRNA-1 |
| chr1_1 | CDS | 15946177 | 15946297 | 15946177 | ID=Msa0010540-mRNA-1:cds;Parent=Msa0010540-mRNA-1 |
| chr1_1 | CDS | 15945875 | 15945942 | 15945875 | ID=Msa0010540-mRNA-1:cds;Parent=Msa0010540-mRNA-1 |
| chr1_1 | CDS | 15944792 | 15945427 | 15944792 | ID=Msa0010540-mRNA-1:cds;Parent=Msa0010540-mRNA-1 |
| chr1_1 | CDS | 15943824 | 15943928 | 15943824 | ID=Msa0010540-mRNA-1:cds;Parent=Msa0010540-mRNA-1 |
| chr1_1 | CDS | 15942604 | 15942927 | 15942604 | ID=Msa0010540-mRNA-1:cds;Parent=Msa0010540-mRNA-1 |
| chr1_1 | three_prime_UTR | 15942240 | 15942603 | 15942240 | ID=Msa0010540-mRNA-1:three_prime_utr;Parent=Msa0010540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
