AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151160 MtrunA17_Chr1g0159541 98.899 454 5 0 1 454 1 454 0.0 934
Msa0151160 MtrunA17_Chr3g0125661 80.837 454 79 6 1 453 1 447 0.0 744
Msa0151160 MtrunA17_Chr5g0420221 53.759 439 183 7 8 446 16 434 5.10e-155 447
Msa0151160 MtrunA17_Chr7g0222461 52.135 445 200 6 9 453 10 441 1.68e-153 443
Msa0151160 MtrunA17_Chr7g0224571 48.764 445 217 6 9 452 1 435 3.52e-142 414
Msa0151160 MtrunA17_Chr4g0056741 46.387 429 190 7 6 426 3 399 2.26e-131 386
Msa0151160 MtrunA17_Chr5g0400941 46.437 435 214 8 10 432 10 437 1.17e-128 381
Msa0151160 MtrunA17_Chr5g0398581 44.812 453 221 8 6 453 3 431 1.80e-128 379
Msa0151160 MtrunA17_Chr4g0054261 40.793 429 237 4 7 420 26 452 5.50e-111 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151160 AT1G76990.4 69.414 461 124 7 1 453 1 452 0.0 657
Msa0151160 AT1G76990.5 69.414 461 124 7 1 453 1 452 0.0 657
Msa0151160 AT1G76990.2 69.414 461 124 7 1 453 1 452 0.0 657
Msa0151160 AT1G76990.3 69.414 461 124 7 1 453 1 452 0.0 657
Msa0151160 AT1G76990.1 69.414 461 124 7 1 453 1 452 0.0 657
Msa0151160 AT1G69040.2 52.009 448 192 7 9 450 11 441 1.24e-150 436
Msa0151160 AT1G69040.1 52.009 448 192 7 9 450 7 437 2.79e-150 435
Msa0151160 AT5G25320.1 49.433 441 195 7 1 414 1 440 5.38e-147 429
Msa0151160 AT2G03730.2 50.000 458 205 9 4 451 3 446 1.43e-145 423
Msa0151160 AT2G03730.1 50.000 458 205 9 4 451 3 446 1.43e-145 423
Msa0151160 AT3G01990.7 50.493 406 186 5 10 415 17 407 3.85e-137 402
Msa0151160 AT3G01990.5 50.493 406 186 5 10 415 17 407 3.85e-137 402
Msa0151160 AT3G01990.10 50.493 406 186 5 10 415 3 393 4.81e-137 401
Msa0151160 AT3G01990.1 50.493 406 186 5 10 415 3 393 4.81e-137 401
Msa0151160 AT3G01990.6 50.493 406 186 5 10 415 17 407 6.49e-137 401
Msa0151160 AT3G01990.11 50.493 406 186 5 10 415 3 393 6.51e-137 400
Msa0151160 AT5G25320.3 48.259 402 182 5 38 414 1 401 8.24e-128 378
Msa0151160 AT4G22780.1 47.407 405 188 4 12 415 9 389 2.99e-124 369
Msa0151160 AT4G22780.2 47.407 405 188 4 12 415 9 389 2.99e-124 369
Msa0151160 AT1G12420.1 45.714 420 205 8 8 427 6 402 5.83e-121 360
Msa0151160 AT5G25320.2 47.059 374 170 7 1 347 1 373 1.47e-112 336
Msa0151160 AT5G65890.1 40.638 470 252 7 7 454 8 472 1.77e-112 340
Msa0151160 AT5G65890.3 40.638 470 252 7 7 454 8 472 1.77e-112 340
Msa0151160 AT3G01990.9 49.271 343 159 5 10 352 3 330 7.29e-109 325
Msa0151160 AT3G01990.4 49.271 343 159 5 10 352 17 344 9.63e-109 325
Msa0151160 AT3G01990.2 49.704 338 155 5 10 347 17 339 1.05e-108 325
Msa0151160 AT1G12420.2 43.466 352 177 7 76 427 1 330 3.07e-92 284
Msa0151160 AT5G65890.4 38.353 425 235 7 52 454 1 420 4.37e-91 283
Msa0151160 AT5G65890.2 38.353 425 235 7 52 454 1 420 4.37e-91 283
Msa0151160 AT3G01990.8 47.319 317 152 5 10 326 3 304 2.44e-89 274
Msa0151160 AT3G01990.3 47.319 317 152 5 10 326 17 318 2.62e-89 275
Msa0151160 AT5G65890.5 36.782 348 201 5 124 454 13 358 1.16e-67 220

Find 174 sgRNAs with CRISPR-Local

Find 673 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAACTCTTCACACCTTC+TGG 0.132030 1_4:+13099707 None:intergenic
TTGATTCTCCTCCCTCTTTC+AGG 0.151257 1_4:-13099286 Msa0151160:CDS
AATACGTTCTATTTCGATAT+TGG 0.184866 1_4:+13099262 None:intergenic
TGAATCTTGGTCCAATTTAA+TGG 0.187172 1_4:+13108121 None:intergenic
TTCTGATGGTAGTTGGTTTA+TGG 0.190044 1_4:-13100520 Msa0151160:CDS
AACAATATCTTCCATTAAAT+TGG 0.222510 1_4:-13108132 Msa0151160:five_prime_UTR
GCCCATCCTCGAGAGGTTTC+TGG 0.246221 1_4:+13097010 None:intergenic
CACGACTTCCAGAAGAATTC+CGG 0.255581 1_4:+13100590 None:intergenic
AACATTTGGGTTGGGGCATT+TGG 0.261897 1_4:+13108057 None:intergenic
ATACGTTCTATTTCGATATT+GGG 0.265506 1_4:+13099263 None:intergenic
AGGTTCTTGACTTAATTAAA+AGG 0.270566 1_4:-13096953 Msa0151160:exon
CAATAAACCCGGAATTCTTC+TGG 0.280162 1_4:-13100598 Msa0151160:CDS
ATGACAAACAATAGAACATT+TGG 0.294565 1_4:+13108043 None:intergenic
TAACAGAGAAGTAGTACTTT+AGG 0.308361 1_4:+13107982 None:intergenic
CCCAACTCTTCACACCTTCT+GGG 0.315377 1_4:+13099708 None:intergenic
GAAGCACTGCGTAAAGAAAT+TGG 0.317035 1_4:-13097082 Msa0151160:CDS
GCTAGAGTAAGCTTCTTCTT+TGG 0.317293 1_4:-13096989 Msa0151160:CDS
TCATTTACAAATCACAAAAT+AGG 0.319364 1_4:+13096915 None:intergenic
CTAGAGTAAGCTTCTTCTTT+GGG 0.326628 1_4:-13096988 Msa0151160:CDS
CCAAATGTTGTTTGCTGATA+GGG 0.330716 1_4:-13099348 Msa0151160:CDS
TCTAATTCGCAGGGTCTCTA+TGG 0.333159 1_4:-13101176 Msa0151160:intron
TTGTTGCATCATTGACATAA+AGG 0.334530 1_4:+13099519 None:intergenic
ATAGAACGTATTGAAGAAAA+AGG 0.338531 1_4:-13099251 Msa0151160:CDS
ACCAAATGTTGTTTGCTGAT+AGG 0.341425 1_4:-13099349 Msa0151160:CDS
CCCTATCAGCAAACAACATT+TGG 0.356933 1_4:+13099348 None:intergenic
CATTGAATTGGAAGCTTGCC+AGG 0.369227 1_4:+13099588 None:intergenic
TGTGAAGAATTAAGAGTCTT+GGG 0.377971 1_4:-13107905 Msa0151160:five_prime_UTR
TGAATAAAGCTCTTGAATCT+TGG 0.378320 1_4:+13108108 None:intergenic
TGAGATGGACATGTTATGAT+AGG 0.378598 1_4:+13096770 None:intergenic
ATTTAGTCCTTTCTCTCCTA+TGG 0.378855 1_4:+13097156 None:intergenic
CTTCTTCTTTGGGAACTTGT+TGG 0.378986 1_4:-13096978 Msa0151160:CDS
GGTGAAACCCATGGAGAAAC+TGG 0.381534 1_4:+13099397 None:intergenic
TCGAGAGGTTTCTGGTGCTT+TGG 0.382279 1_4:+13097018 None:intergenic
CAGCTGCAATCACATTGAAT+TGG 0.392381 1_4:+13099576 None:intergenic
AACATCTTACAAGCATTGTT+TGG 0.393303 1_4:+13096810 None:intergenic
TCTGGGCTCTTGCGGCCCTT+TGG 0.393975 1_4:+13099725 None:intergenic
AACAATAGAACATTTGGGTT+GGG 0.394214 1_4:+13108049 None:intergenic
CGGGTTGGCATTCACTCAAT+TGG 0.398611 1_4:-13099677 Msa0151160:CDS
TCTGGTGCTTTGGTGTTGGC+TGG 0.406285 1_4:+13097028 None:intergenic
CTGAAGTTTGGACACATAAC+AGG 0.409440 1_4:-13099556 Msa0151160:CDS
TATAATCCTTAGCTAAACTT+TGG 0.410330 1_4:-13107932 Msa0151160:five_prime_UTR
ACGACTTCCAGAAGAATTCC+GGG 0.412177 1_4:+13100591 None:intergenic
ACATATCTTCTGATGGTAGT+TGG 0.412715 1_4:-13100527 Msa0151160:CDS
ATTGTTTGGTTTAAAACAAA+AGG 0.420375 1_4:+13096824 None:intergenic
ATGTGATTGCAGCTGAAGTT+TGG 0.420601 1_4:-13099568 Msa0151160:CDS
ATCAGAAGATATGTAAGCTT+TGG 0.421120 1_4:+13100536 None:intergenic
GCCCAGAAGGTGTGAAGAGT+TGG 0.421778 1_4:-13099709 Msa0151160:CDS
TGGGTTGGGGCATTTGGCAA+TGG 0.425220 1_4:+13108063 None:intergenic
AGAACGGCTTAACAGTTTGT+AGG 0.425881 1_4:-13097192 Msa0151160:CDS
GGTTTCTGGTGCTTTGGTGT+TGG 0.431935 1_4:+13097024 None:intergenic
TGACAAACAATAGAACATTT+GGG 0.445347 1_4:+13108044 None:intergenic
ACTTGGACAGTGCTTGAACT+TGG 0.448825 1_4:-13096848 Msa0151160:three_prime_UTR
ATGTGAAGAATTAAGAGTCT+TGG 0.452701 1_4:-13107906 Msa0151160:five_prime_UTR
TCGTACTCAGGATCAAAGTA+TGG 0.456449 1_4:+13101649 None:intergenic
CATACAGCCATTGAGCTCAT+TGG 0.456613 1_4:-13099650 Msa0151160:CDS
CCCAGAAGGTGTGAAGAGTT+GGG 0.459787 1_4:-13099708 Msa0151160:CDS
TCTTTGGGAACTTGTTGGAA+AGG 0.462241 1_4:-13096973 Msa0151160:CDS
CATGCCTCCATCTCATCTGA+AGG 0.466025 1_4:-13099137 Msa0151160:CDS
TGAAGAGTTGGGAAGGCAAA+CGG 0.470682 1_4:-13099697 Msa0151160:CDS
GTCTGAGATATCAGCTGTCC+TGG 0.471061 1_4:-13099606 Msa0151160:CDS
GGCTTAACAGTTTGTAGGGC+AGG 0.471990 1_4:-13097187 Msa0151160:CDS
AATTATCGACTTCATTGAAA+AGG 0.472149 1_4:-13100213 Msa0151160:intron
GCCCGGACCAGTTTCTCCAT+GGG 0.476717 1_4:-13099404 Msa0151160:CDS
GGCCCGGACCAGTTTCTCCA+TGG 0.476875 1_4:-13099405 Msa0151160:CDS
AATCCTTAGCTAAACTTTGG+AGG 0.477125 1_4:-13107929 Msa0151160:five_prime_UTR
GGTTCTTGACTTAATTAAAA+GGG 0.477530 1_4:-13096952 Msa0151160:exon
ACACTGAAGGGGAGAAAGAA+AGG 0.477680 1_4:-13098198 Msa0151160:CDS
TCAATGATGTTCATATCCAC+AGG 0.481133 1_4:+13097103 None:intergenic
TTGCTGAAGTTCTCGTACTC+AGG 0.482576 1_4:+13101637 None:intergenic
GTTGAATGGCAAAAGTTTGT+TGG 0.483753 1_4:-13101672 Msa0151160:exon
TTATGAAGTCAAGGTCTGTC+AGG 0.488033 1_4:+13100562 None:intergenic
ACATGTTATGATAGGGAAGA+TGG 0.494611 1_4:+13096778 None:intergenic
AACCCATGGAGAAACTGGTC+CGG 0.494805 1_4:+13099402 None:intergenic
CATCCTCCAAAGTTTAGCTA+AGG 0.502621 1_4:+13107926 None:intergenic
TCACATTGACCATCACAGTC+TGG 0.502894 1_4:+13097059 None:intergenic
GACATTTGAAGTATATATGC+AGG 0.503272 1_4:-13096674 Msa0151160:three_prime_UTR
GAAGAGTTGGGAAGGCAAAC+GGG 0.503318 1_4:-13099696 Msa0151160:CDS
ATTCTTAGGAGTACTTCATC+AGG 0.510626 1_4:-13098243 Msa0151160:intron
TTCGATATTGGGCCTGAAAG+AGG 0.510982 1_4:+13099274 None:intergenic
TGAACATTTAAATAGGCTCT+AGG 0.512518 1_4:-13099749 Msa0151160:intron
CCATGATTGTACACTGATCA+AGG 0.512717 1_4:-13101140 Msa0151160:intron
TCGATATTGGGCCTGAAAGA+GGG 0.514165 1_4:+13099275 None:intergenic
ACCCATGGAGAAACTGGTCC+GGG 0.514443 1_4:+13099403 None:intergenic
GTGGAAGTTTACCATTGGCT+TGG 0.515475 1_4:-13108192 Msa0151160:five_prime_UTR
GACGAGAGAAGGTGGTTGAA+TGG 0.517921 1_4:-13101686 Msa0151160:exon
AGCCATTGAGCTCATTGGTC+GGG 0.518001 1_4:-13099645 Msa0151160:CDS
CCTTGATCAGTGTACAATCA+TGG 0.522276 1_4:+13101140 None:intergenic
CACCAGAAACCTCTCGAGGA+TGG 0.523676 1_4:-13097012 Msa0151160:CDS
CTCATTGGTCGGGACCGCCC+AGG 0.524150 1_4:-13099635 Msa0151160:CDS
TTGAATCATCATCCGCAGCT+TGG 0.525053 1_4:+13099495 None:intergenic
AAGCTCAACCACATCCTTCG+TGG 0.529052 1_4:-13099449 Msa0151160:CDS
TATCAGCAAACAACATTTGG+TGG 0.529977 1_4:+13099351 None:intergenic
AAACAATAGAACATTTGGGT+TGG 0.530854 1_4:+13108048 None:intergenic
TGAAGGGCCATATGCTTCAC+AGG 0.531696 1_4:-13099120 Msa0151160:intron
AAGTTGTTGTGTGTCAAACT+TGG 0.534227 1_4:-13096865 Msa0151160:three_prime_UTR
ACAATAGAACATTTGGGTTG+GGG 0.535225 1_4:+13108050 None:intergenic
TTCTATGTGAGAGATGCATA+TGG 0.536976 1_4:-13097130 Msa0151160:CDS
TAGTGTGAGATGCAAAGATC+GGG 0.541924 1_4:-13099216 Msa0151160:CDS
GATGGTAGTTGGTTTATGGA+TGG 0.543454 1_4:-13100516 Msa0151160:intron
GATATCTCAGACAAAAGACC+TGG 0.545024 1_4:+13099617 None:intergenic
TACTTCATCAGGCACGTGGA+TGG 0.545747 1_4:-13098232 Msa0151160:CDS
GTGTCAACCATAGGAGAGAA+AGG 0.546097 1_4:-13097163 Msa0151160:CDS
CCTTCTGTCCATGTGGGTGA+AGG 0.546823 1_4:+13099376 None:intergenic
CATACGTGGAAGTTTACCAT+TGG 0.548104 1_4:-13108197 Msa0151160:five_prime_UTR
AGCAATTTATTGACGAGAGA+AGG 0.548549 1_4:-13101697 Msa0151160:five_prime_UTR
ACCAGAAACCTCTCGAGGAT+GGG 0.548981 1_4:-13097011 Msa0151160:CDS
GTCCCGACCAATGAGCTCAA+TGG 0.551521 1_4:+13099643 None:intergenic
GAGTGTGTTGTATTTATACA+AGG 0.552575 1_4:-13096702 Msa0151160:three_prime_UTR
ATGAACAGTATTTCATGTCA+CGG 0.554080 1_4:-13100267 Msa0151160:intron
GAACGGCTTAACAGTTTGTA+GGG 0.558245 1_4:-13097191 Msa0151160:CDS
AAGTTAACAGGGAACCTTGG+AGG 0.558483 1_4:+13101604 None:intergenic
ATGCATACCTGTGAAGCATA+TGG 0.558826 1_4:+13099113 None:intergenic
TAAATAGGCTCTAGGACCAA+AGG 0.562311 1_4:-13099741 Msa0151160:intron
AAGGGCCGCAAGAGCCCAGA+AGG 0.562789 1_4:-13099722 Msa0151160:CDS
GGATGCACACTTGACACTGA+AGG 0.564728 1_4:-13098211 Msa0151160:CDS
GGGTTTCACCTTCACCCACA+TGG 0.565505 1_4:-13099384 Msa0151160:CDS
GCTTGCTGTCTGAAGTGACT+AGG 0.566444 1_4:-13097225 Msa0151160:CDS
TCACACCTTCTGGGCTCTTG+CGG 0.569295 1_4:+13099717 None:intergenic
AAATAGGCTCTAGGACCAAA+GGG 0.571475 1_4:-13099740 Msa0151160:intron
CCTCACAACCACGAAGGATG+TGG 0.572226 1_4:+13099441 None:intergenic
AGAATTAAGAGTCTTGGGGT+TGG 0.573664 1_4:-13107900 Msa0151160:five_prime_UTR
GAGATGGACATGTTATGATA+GGG 0.574314 1_4:+13096771 None:intergenic
CTTTGGTAATTATGAAGTCA+AGG 0.574350 1_4:+13100553 None:intergenic
CCTTCACCCACATGGACAGA+AGG 0.575437 1_4:-13099376 Msa0151160:CDS
TATCCTTTGCACACAGCTCA+AGG 0.579485 1_4:+13097254 None:intergenic
ATTAAGTAAGATACATGAGA+TGG 0.580895 1_4:+13096755 None:intergenic
GATGCACACTTGACACTGAA+GGG 0.583904 1_4:-13098210 Msa0151160:CDS
GTGAAGAATTAAGAGTCTTG+GGG 0.584942 1_4:-13107904 Msa0151160:five_prime_UTR
CCACATCCTTCGTGGTTGTG+AGG 0.585266 1_4:-13099441 Msa0151160:CDS
TACTCTAGCCCATCCTCGAG+AGG 0.585301 1_4:+13097003 None:intergenic
TTAGTGTGAGATGCAAAGAT+CGG 0.586475 1_4:-13099217 Msa0151160:CDS
AGGGCAGGTGTGTCAACCAT+AGG 0.587010 1_4:-13097172 Msa0151160:CDS
AACATATTTAACCAAGCCAA+TGG 0.592485 1_4:+13108181 None:intergenic
GTGGAGCCTTCTGTCCATGT+GGG 0.594043 1_4:+13099370 None:intergenic
AAAGCTTACATATCTTCTGA+TGG 0.594595 1_4:-13100534 Msa0151160:CDS
CAGCCATTGAGCTCATTGGT+CGG 0.596989 1_4:-13099646 Msa0151160:CDS
AGTTGGGAAGGCAAACGGGT+TGG 0.597769 1_4:-13099692 Msa0151160:CDS
TTCTATTATGCTATCCACGT+TGG 0.599235 1_4:+13108019 None:intergenic
CAATGATGTTCATATCCACA+GGG 0.601090 1_4:+13097104 None:intergenic
GAAGGTGTGAAGAGTTGGGA+AGG 0.603934 1_4:-13099704 Msa0151160:CDS
ATATGGCCCTTCAGATGAGA+TGG 0.605356 1_4:+13099130 None:intergenic
GATAGGGATTATGAGAGTGC+TGG 0.606196 1_4:-13099332 Msa0151160:CDS
ATGCCTCCATCTCATCTGAA+GGG 0.606421 1_4:-13099136 Msa0151160:CDS
CACTGAAGGGGAGAAAGAAA+GGG 0.607213 1_4:-13098197 Msa0151160:CDS
TGTGATGGTCAATGTGAAGA+AGG 0.612803 1_4:-13097053 Msa0151160:CDS
ACTAGGATTCTACGAGAGAA+CGG 0.613355 1_4:-13097208 Msa0151160:CDS
AGAAATTGGCCAGACTGTGA+TGG 0.614374 1_4:-13097068 Msa0151160:CDS
AGGGATTATGAGAGTGCTGG+TGG 0.616212 1_4:-13099329 Msa0151160:CDS
TGTCTGCACTCTTACTGACA+TGG 0.618144 1_4:-13099174 Msa0151160:CDS
AATTTATTGACGAGAGAAGG+TGG 0.618355 1_4:-13101694 Msa0151160:five_prime_UTR
TATTCAAAGAAGAGTAAGCG+AGG 0.636120 1_4:-13098152 Msa0151160:intron
GCAACAGAATCAATCCTCCA+AGG 0.646007 1_4:-13101618 Msa0151160:intron
GGTGGAGCCTTCTGTCCATG+TGG 0.646466 1_4:+13099369 None:intergenic
TGGCCCTTCAGATGAGATGG+AGG 0.653838 1_4:+13099133 None:intergenic
TTGTGAGGATGATGAGAATG+TGG 0.655874 1_4:-13099426 Msa0151160:CDS
GTGGGTGAAGGTGAAACCCA+TGG 0.659048 1_4:+13099388 None:intergenic
GGAGTACTTCATCAGGCACG+TGG 0.663877 1_4:-13098236 Msa0151160:CDS
TATGCACTACTTAGCATACG+TGG 0.663998 1_4:-13108211 Msa0151160:five_prime_UTR
ATGCACACTTGACACTGAAG+GGG 0.665219 1_4:-13098209 Msa0151160:CDS
GAGCCTTGAGCTGTGTGCAA+AGG 0.668681 1_4:-13097257 Msa0151160:CDS
ATTGATAGCGTCAATAAACC+CGG 0.669304 1_4:-13100609 Msa0151160:CDS
TTTCATGTCACGGATCAGCA+AGG 0.670024 1_4:-13100257 Msa0151160:CDS
ATAGCATAATAGAAGCACAT+AGG 0.670386 1_4:-13108010 Msa0151160:five_prime_UTR
TGATGCAACAAACCAAGCTG+CGG 0.670519 1_4:-13099507 Msa0151160:CDS
ATATCTCAGACAAAAGACCT+GGG 0.673607 1_4:+13099618 None:intergenic
AGGATGATGAGAATGTGGCC+CGG 0.675899 1_4:-13099421 Msa0151160:CDS
CTGTGTGCAAAGGATAGAGT+GGG 0.677348 1_4:-13097247 Msa0151160:CDS
GCTGTGTGCAAAGGATAGAG+TGG 0.682070 1_4:-13097248 Msa0151160:CDS
CATCATCCTCACAACCACGA+AGG 0.690210 1_4:+13099435 None:intergenic
TATTGTTTGTCATTCCAACG+TGG 0.693250 1_4:-13108033 Msa0151160:five_prime_UTR
ATATTGGGCCTGAAAGAGGG+AGG 0.694567 1_4:+13099278 None:intergenic
AAAGCACCAGAAACCTCTCG+AGG 0.723344 1_4:-13097016 Msa0151160:CDS
AGATGCATATGGAAACCCTG+TGG 0.774336 1_4:-13097119 Msa0151160:CDS
TCTCAGACAAAAGACCTGGG+CGG 0.775644 1_4:+13099621 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTATATAATATAA+AGG + chr1_4:13100462-13100481 None:intergenic 0.0%
!! ATCAATTCAAATTATTTATA+TGG - chr1_4:13097121-13097140 Msa0151160:CDS 10.0%
!! AATAAAAAATATATTACAGT+TGG + chr1_4:13097842-13097861 None:intergenic 10.0%
!!! TGAATAAAAATTGTTTTTTT+AGG + chr1_4:13097870-13097889 None:intergenic 10.0%
!! TATGATATAAATTAATGAAT+TGG + chr1_4:13098277-13098296 None:intergenic 10.0%
!!! ATTTTATCCAATAAAAAAAA+AGG - chr1_4:13098986-13099005 Msa0151160:intron 10.0%
!!! AAAAAAAATACATTGTTTTT+AGG - chr1_4:13099144-13099163 Msa0151160:CDS 10.0%
!!! AAAAAAATACATTGTTTTTA+GGG - chr1_4:13099145-13099164 Msa0151160:CDS 10.0%
!!! TTTTTTTTCTTTTCTTTATA+CGG + chr1_4:13100854-13100873 None:intergenic 10.0%
!!! TAATTTTTTTGAAAAAGAAT+TGG - chr1_4:13100901-13100920 Msa0151160:intron 10.0%
!! GTTATATTAATAAATTGTAA+TGG - chr1_4:13100963-13100982 Msa0151160:intron 10.0%
!!! AGAATTAATTAATTATTTTG+AGG + chr1_4:13103767-13103786 None:intergenic 10.0%
!! TTGTTTACTTAATTAAAATA+TGG - chr1_4:13104456-13104475 Msa0151160:intron 10.0%
!! AAATGAATTAAAAATTGATA+AGG + chr1_4:13107239-13107258 None:intergenic 10.0%
!! ATTATGATTGTTGAATTTAA+TGG - chr1_4:13097055-13097074 Msa0151160:CDS 15.0%
!!! TCCACAAAAAATAATATTTT+TGG - chr1_4:13098076-13098095 Msa0151160:intron 15.0%
!!! CCACAAAAAATAATATTTTT+GGG - chr1_4:13098077-13098096 Msa0151160:intron 15.0%
!! AATTGAATCGAAATTTATAT+TGG + chr1_4:13098661-13098680 None:intergenic 15.0%
!!! CTTTTATCCTTTTTTTTTAT+TGG + chr1_4:13098996-13099015 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr1_4:13099633-13099652 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr1_4:13099632-13099651 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr1_4:13099376-13099395 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr1_4:13099411-13099430 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr1_4:13099542-13099561 Msa0151160:CDS 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr1_4:13099632-13099651 Msa0151160:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr1_4:13099633-13099652 Msa0151160:CDS 15.0%
!! AGATTCTTAATTAAAAACAA+GGG + chr1_4:13099707-13099726 None:intergenic 15.0%
!! TAGATTCTTAATTAAAAACA+AGG + chr1_4:13099708-13099727 None:intergenic 15.0%
!! TAAATGTAAAATGACATAAA+AGG - chr1_4:13100327-13100346 Msa0151160:intron 15.0%
!! AAATGTAAAATGACATAAAA+GGG - chr1_4:13100328-13100347 Msa0151160:intron 15.0%
!! AAATTAAGTGTAATAATAGA+CGG - chr1_4:13100508-13100527 Msa0151160:intron 15.0%
!!! ATTTAGTTCAAAATAACAAA+AGG - chr1_4:13100722-13100741 Msa0151160:intron 15.0%
!! AAAGAAAAGAAAAAAAAACA+AGG - chr1_4:13100857-13100876 Msa0151160:intron 15.0%
!! GAATTTAGTTAGAATAATAA+GGG - chr1_4:13100995-13101014 Msa0151160:intron 15.0%
!! TCAAATATACTATCATTATT+AGG + chr1_4:13101268-13101287 None:intergenic 15.0%
!!! TTATAAATTCTTAAAGTGTT+TGG - chr1_4:13102075-13102094 Msa0151160:intron 15.0%
!! TGATTTGATAAAATATATCT+TGG + chr1_4:13102897-13102916 None:intergenic 15.0%
!! TGATTTGATAAAATATATCT+TGG + chr1_4:13102897-13102916 None:intergenic 15.0%
!!! TTAAACTCTAAAAAAATTGA+CGG - chr1_4:13103341-13103360 Msa0151160:intron 15.0%
!!! ATTATTTTTTTGTCAAAACA+AGG + chr1_4:13103542-13103561 None:intergenic 15.0%
!!! ATTAATTCTAACATTTTTCA+TGG - chr1_4:13103778-13103797 Msa0151160:intron 15.0%
!!! CAATTTTTTTTTTCTGTTTT+TGG + chr1_4:13103889-13103908 None:intergenic 15.0%
!! TAAGTTAAATTAATGATGTT+AGG + chr1_4:13103935-13103954 None:intergenic 15.0%
!!! ACATCATTAATTTAACTTAT+TGG - chr1_4:13103936-13103955 Msa0151160:intron 15.0%
!! AGTAACTATAAAATAAAGAA+TGG + chr1_4:13105811-13105830 None:intergenic 15.0%
!!! TTTACAGTAATATTTTGAAT+TGG - chr1_4:13105855-13105874 Msa0151160:intron 15.0%
!!! TTGTTTTCAAATTTTTGTAT+AGG + chr1_4:13106065-13106084 None:intergenic 15.0%
!! AAATTAATTGACAAAATTTG+AGG - chr1_4:13106562-13106581 Msa0151160:intron 15.0%
!! AACAATATCTTCCATTAAAT+TGG - chr1_4:13096742-13096761 Msa0151160:three_prime_UTR 20.0%
!!! TCTACTCAATTTTATTTGAA+AGG - chr1_4:13097152-13097171 Msa0151160:CDS 20.0%
!!! TTTGAACAATTTTTCAAAGA+GGG + chr1_4:13097410-13097429 None:intergenic 20.0%
!!! TTTTGAACAATTTTTCAAAG+AGG + chr1_4:13097411-13097430 None:intergenic 20.0%
!! GTGGATAAAAAAAATGTAAT+TGG - chr1_4:13097515-13097534 Msa0151160:intron 20.0%
!! ATGAAAGATTCTATTACATA+TGG - chr1_4:13097539-13097558 Msa0151160:intron 20.0%
!!! ATTTCACTAATTTAGTTCAT+AGG + chr1_4:13097808-13097827 None:intergenic 20.0%
!! AAAAATATATTACAGTTGGT+TGG + chr1_4:13097838-13097857 None:intergenic 20.0%
!!! CCCAAAAATATTATTTTTTG+TGG + chr1_4:13098080-13098099 None:intergenic 20.0%
!!! TATTGATTTTGTAGTAAGTA+AGG + chr1_4:13098417-13098436 None:intergenic 20.0%
!! TGGTTTGAATATATAAAGAT+AGG + chr1_4:13098443-13098462 None:intergenic 20.0%
!! GTTTGTTTATTCAATTTAGA+TGG + chr1_4:13098735-13098754 None:intergenic 20.0%
!!! TTTTTATTCATAAACTGATC+TGG - chr1_4:13098770-13098789 Msa0151160:intron 20.0%
!!! TTTTATTCATAAACTGATCT+GGG - chr1_4:13098771-13098790 Msa0151160:intron 20.0%
!! TTTATTGGATAAAATGTGTT+TGG + chr1_4:13098981-13099000 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr1_4:13099281-13099300 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr1_4:13099282-13099301 None:intergenic 20.0%
!!! CACGTTAAAAAAAGTATATT+TGG - chr1_4:13100791-13100810 Msa0151160:intron 20.0%
!! AAAAAAACTAACAAAACTGA+CGG - chr1_4:13100824-13100843 Msa0151160:intron 20.0%
!!! TAAATTGTAATGGGTAAAAA+TGG - chr1_4:13100973-13100992 Msa0151160:intron 20.0%
!! GGAATTTAGTTAGAATAATA+AGG - chr1_4:13100994-13101013 Msa0151160:intron 20.0%
!!! GTTTTAAAAATGTGAAACTT+TGG + chr1_4:13101539-13101558 None:intergenic 20.0%
!!! CACTTTAAGAATTTATAATC+AGG + chr1_4:13102073-13102092 None:intergenic 20.0%
!!! ATTCTAAAATAGTTACAAGT+CGG - chr1_4:13102122-13102141 Msa0151160:intron 20.0%
!! AGATTAGAATAAGAAAGTAA+TGG - chr1_4:13103102-13103121 Msa0151160:intron 20.0%
!!! TTAAATATTTTGCAGATCAA+TGG + chr1_4:13103325-13103344 None:intergenic 20.0%
!! TTCTTTATTCCTAGTAAATT+AGG - chr1_4:13104127-13104146 Msa0151160:intron 20.0%
!! GAAAGAACAAAAATAAGAAT+TGG + chr1_4:13104815-13104834 None:intergenic 20.0%
!! AATTTCTTTATTCCTTCATT+TGG + chr1_4:13105984-13106003 None:intergenic 20.0%
!! AGGTTCAAAATGTATTAATT+TGG + chr1_4:13106962-13106981 None:intergenic 20.0%
!!! TTTTTTTCCTTCATATTTTG+AGG + chr1_4:13107165-13107184 None:intergenic 20.0%
!!! TAATTTTATTAGTTTTCGAC+AGG - chr1_4:13107287-13107306 Msa0151160:intron 20.0%
!! TAGGGACTATAATTAATTAA+TGG - chr1_4:13107391-13107410 Msa0151160:intron 20.0%
!! TCATTTACAAATCACAAAAT+AGG + chr1_4:13107962-13107981 None:intergenic 20.0%
!!! ATTGTTTGGTTTAAAACAAA+AGG + chr1_4:13108053-13108072 None:intergenic 20.0%
! TGACAAACAATAGAACATTT+GGG + chr1_4:13096833-13096852 None:intergenic 25.0%
! ATGACAAACAATAGAACATT+TGG + chr1_4:13096834-13096853 None:intergenic 25.0%
! TATAATCCTTAGCTAAACTT+TGG - chr1_4:13096942-13096961 Msa0151160:exon 25.0%
!! GTTACTTTGGCATAAATTTA+TGG + chr1_4:13097268-13097287 None:intergenic 25.0%
! TGTTAAAGATCAATCTTTGT+AGG + chr1_4:13097578-13097597 None:intergenic 25.0%
!!! CTTTGAGTATACTCATTTTT+AGG - chr1_4:13097641-13097660 Msa0151160:intron 25.0%
!!! TTTGAGAAAAAGTGTCTTTT+TGG - chr1_4:13098019-13098038 Msa0151160:intron 25.0%
!!! TTTTTTGTGGAGATTACTAT+TGG + chr1_4:13098067-13098086 None:intergenic 25.0%
!!! ATTTTTGGGTTTCATTAACT+CGG - chr1_4:13098091-13098110 Msa0151160:intron 25.0%
! AGATTAAGTAATCAATGAGT+TGG + chr1_4:13098314-13098333 None:intergenic 25.0%
!!! ATTTCTTTGATAGTTTTTCC+AGG - chr1_4:13098343-13098362 Msa0151160:intron 25.0%
! AATATATAGAGATGTTGTGT+TGG + chr1_4:13098558-13098577 None:intergenic 25.0%
! ATTGTATGAAACAAAATGTG+TGG + chr1_4:13098618-13098637 None:intergenic 25.0%
! TTTGTTTCATACAATATCGA+TGG - chr1_4:13098623-13098642 Msa0151160:intron 25.0%
!! ACAAATACTTTAGAAAGGAA+TGG - chr1_4:13098795-13098814 Msa0151160:intron 25.0%
!! CAAATACTTTAGAAAGGAAT+GGG - chr1_4:13098796-13098815 Msa0151160:intron 25.0%
!! AAATACTTTAGAAAGGAATG+GGG - chr1_4:13098797-13098816 Msa0151160:intron 25.0%
! CCATATAACCAAAAAAATTG+AGG + chr1_4:13098948-13098967 None:intergenic 25.0%
!!! CCTCAATTTTTTTGGTTATA+TGG - chr1_4:13098945-13098964 Msa0151160:intron 25.0%
!!! TTTGGTTTTAGTTTTGTTGT+TGG + chr1_4:13099061-13099080 None:intergenic 25.0%
!! CTAACATTGTAATTGTTGTT+TGG + chr1_4:13099079-13099098 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr1_4:13099248-13099267 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr1_4:13099570-13099589 Msa0151160:CDS 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr1_4:13099571-13099590 Msa0151160:CDS 25.0%
! TAGAATAATAAGGGTAGAAA+TGG - chr1_4:13101004-13101023 Msa0151160:intron 25.0%
! TGTAAAAAAAGTTACCAAAC+AGG - chr1_4:13101135-13101154 Msa0151160:intron 25.0%
! GTAAAAAAAGTTACCAAACA+GGG - chr1_4:13101136-13101155 Msa0151160:intron 25.0%
!! CACAAATTCAGTTTTACTAA+GGG + chr1_4:13101228-13101247 None:intergenic 25.0%
!! TCACAAATTCAGTTTTACTA+AGG + chr1_4:13101229-13101248 None:intergenic 25.0%
!! TTTTGCAAAATCATGTGATT+CGG - chr1_4:13101473-13101492 Msa0151160:intron 25.0%
!!! ACATTTGATTTCCGTTTTAA+GGG + chr1_4:13101714-13101733 None:intergenic 25.0%
!! TCAAAAGAATGTGTTTTCAT+AGG - chr1_4:13102153-13102172 Msa0151160:intron 25.0%
! TACAAAATCGTATACTTAGA+TGG - chr1_4:13102483-13102502 Msa0151160:intron 25.0%
!!! ACGAAGAATTTTAGCTTAAA+TGG + chr1_4:13102527-13102546 None:intergenic 25.0%
!!! TGTAAACCATATTGTTGTTT+GGG + chr1_4:13102773-13102792 None:intergenic 25.0%
! AATGGAATAAGGTTTCATAT+AGG + chr1_4:13102853-13102872 None:intergenic 25.0%
! GATAAAATATATCTTGGACT+TGG + chr1_4:13102891-13102910 None:intergenic 25.0%
! GTTATTATAGGAATGGAATA+AGG + chr1_4:13102947-13102966 None:intergenic 25.0%
! TGGTTATGTTATTATAGGAA+TGG + chr1_4:13102954-13102973 None:intergenic 25.0%
! GATAAAATATATCTTGGACT+TGG + chr1_4:13102891-13102910 None:intergenic 25.0%
!! ACAAATTGTTTCCTTTTCTA+TGG - chr1_4:13103002-13103021 Msa0151160:intron 25.0%
!!! ACTTGTTTGCTTTTGATTAA+GGG - chr1_4:13103147-13103166 Msa0151160:intron 25.0%
!! AAACAAGCATTGTATTTCAA+GGG + chr1_4:13103296-13103315 None:intergenic 25.0%
!! AAAACAAGCATTGTATTTCA+AGG + chr1_4:13103297-13103316 None:intergenic 25.0%
!! AGTAACAGTATGATGATTTT+TGG - chr1_4:13103380-13103399 Msa0151160:intron 25.0%
! ATAATTAGTCCTTTGTTACA+AGG - chr1_4:13103557-13103576 Msa0151160:intron 25.0%
! TAAATTAATGATGTTAGGCT+AGG + chr1_4:13103930-13103949 None:intergenic 25.0%
!!! TAAGTTGATGCTATATCTAA+TGG - chr1_4:13104220-13104239 Msa0151160:intron 25.0%
! TTTGTTGCATATGCAAATAA+TGG - chr1_4:13104485-13104504 Msa0151160:intron 25.0%
! TTGTTGCATATGCAAATAAT+GGG - chr1_4:13104486-13104505 Msa0151160:intron 25.0%
!!! AATTATCGACTTCATTGAAA+AGG - chr1_4:13104661-13104680 Msa0151160:intron 25.0%
!! GACATGCTTTTAATAAGATA+TGG - chr1_4:13104715-13104734 Msa0151160:intron 25.0%
!! TTGATATTTAGAGTCTGTTT+AGG + chr1_4:13105040-13105059 None:intergenic 25.0%
! AACAGACTCTAAATATCAAT+TGG - chr1_4:13105041-13105060 Msa0151160:intron 25.0%
! CTAGTTGTGAACATTTAAAT+AGG - chr1_4:13105118-13105137 Msa0151160:intron 25.0%
! ATACGTTCTATTTCGATATT+GGG + chr1_4:13105614-13105633 None:intergenic 25.0%
! AATACGTTCTATTTCGATAT+TGG + chr1_4:13105615-13105634 None:intergenic 25.0%
! ATAGAACGTATTGAAGAAAA+AGG - chr1_4:13105623-13105642 Msa0151160:intron 25.0%
!!! GTCTGAATTTTCTGAAAAAT+AGG - chr1_4:13105920-13105939 Msa0151160:intron 25.0%
! TTGTTCTTGTAAAAAGACTA+AGG - chr1_4:13106011-13106030 Msa0151160:intron 25.0%
! TGTTCTTGTAAAAAGACTAA+GGG - chr1_4:13106012-13106031 Msa0151160:intron 25.0%
! AAAACCTAAAAACAAGATGA+GGG - chr1_4:13106087-13106106 Msa0151160:intron 25.0%
!! TTTTGCAATTAAAACGGAAA+AGG - chr1_4:13106110-13106129 Msa0151160:intron 25.0%
!! ATCAAAACATTAGGGTTTTA+TGG + chr1_4:13106159-13106178 None:intergenic 25.0%
!! TATGTTTGAAGTATGTAGTA+AGG - chr1_4:13106503-13106522 Msa0151160:intron 25.0%
!! ATGTTTGAAGTATGTAGTAA+GGG - chr1_4:13106504-13106523 Msa0151160:intron 25.0%
! AACCATTACTAAAATAGACA+AGG - chr1_4:13106782-13106801 Msa0151160:intron 25.0%
!!! ATCCTTGTCTATTTTAGTAA+TGG + chr1_4:13106787-13106806 None:intergenic 25.0%
!!! CTTCATATTTTGAGGTTATA+GGG + chr1_4:13107157-13107176 None:intergenic 25.0%
!! TAGACAGTCATGATTTTATA+AGG + chr1_4:13107208-13107227 None:intergenic 25.0%
!!! GGTAAAAGTTTTATAGACTA+AGG - chr1_4:13107349-13107368 Msa0151160:intron 25.0%
!! TTAAACTATCGTGATTTTGT+AGG - chr1_4:13107372-13107391 Msa0151160:intron 25.0%
!! TAAACTATCGTGATTTTGTA+GGG - chr1_4:13107373-13107392 Msa0151160:intron 25.0%
! ATAATAATATGCATGATAGC+TGG + chr1_4:13107465-13107484 None:intergenic 25.0%
! AGGTTCTTGACTTAATTAAA+AGG - chr1_4:13107921-13107940 Msa0151160:five_prime_UTR 25.0%
! GGTTCTTGACTTAATTAAAA+GGG - chr1_4:13107922-13107941 Msa0151160:five_prime_UTR 25.0%
! ATTAAGTAAGATACATGAGA+TGG + chr1_4:13108122-13108141 None:intergenic 25.0%
AACATATTTAACCAAGCCAA+TGG + chr1_4:13096696-13096715 None:intergenic 30.0%
TGAATCTTGGTCCAATTTAA+TGG + chr1_4:13096756-13096775 None:intergenic 30.0%
TGAATAAAGCTCTTGAATCT+TGG + chr1_4:13096769-13096788 None:intergenic 30.0%
! AACAATAGAACATTTGGGTT+GGG + chr1_4:13096828-13096847 None:intergenic 30.0%
AAACAATAGAACATTTGGGT+TGG + chr1_4:13096829-13096848 None:intergenic 30.0%
! ATAGCATAATAGAAGCACAT+AGG - chr1_4:13096864-13096883 Msa0151160:three_prime_UTR 30.0%
TAACAGAGAAGTAGTACTTT+AGG + chr1_4:13096895-13096914 None:intergenic 30.0%
ATGTGAAGAATTAAGAGTCT+TGG - chr1_4:13096968-13096987 Msa0151160:CDS 30.0%
TGTGAAGAATTAAGAGTCTT+GGG - chr1_4:13096969-13096988 Msa0151160:CDS 30.0%
! TTTTCTTTTGGATACACAAG+AGG - chr1_4:13097001-13097020 Msa0151160:CDS 30.0%
CTTTGGCATAAATTTATGGA+TGG + chr1_4:13097264-13097283 None:intergenic 30.0%
GTAGCATCATATAGTTACTT+TGG + chr1_4:13097281-13097300 None:intergenic 30.0%
GCTTCTTTATATATACACGT+CGG - chr1_4:13097339-13097358 Msa0151160:intron 30.0%
ACTCAAACTCACTTCATTTA+AGG + chr1_4:13097492-13097511 None:intergenic 30.0%
TACAATTTCAACATGTCTCA+TGG - chr1_4:13097934-13097953 Msa0151160:intron 30.0%
!! CTCATGGACGTATTTTTATA+TGG - chr1_4:13097950-13097969 Msa0151160:intron 30.0%
TTACTATTGGAGATGTTCTT+AGG + chr1_4:13098054-13098073 None:intergenic 30.0%
TACATGTGAGTTAAACTTGT+GGG + chr1_4:13098176-13098195 None:intergenic 30.0%
TTACATGTGAGTTAAACTTG+TGG + chr1_4:13098177-13098196 None:intergenic 30.0%
! AAGTCTTTTCTCATTAAGTG+AGG - chr1_4:13098219-13098238 Msa0151160:CDS 30.0%
! AGTAAGGAGAGTATATTGTA+TGG + chr1_4:13098401-13098420 None:intergenic 30.0%
AGATGTTGGAAAATAAGCTT+AGG + chr1_4:13098466-13098485 None:intergenic 30.0%
ACTTGTAGTAAAACAGATGT+TGG + chr1_4:13098480-13098499 None:intergenic 30.0%
TATGAAACAAAATGTGTGGA+TGG + chr1_4:13098614-13098633 None:intergenic 30.0%
! TACAATATCGATGGACTTAT+TGG - chr1_4:13098632-13098651 Msa0151160:intron 30.0%
! TGGGAACAAATACTTTAGAA+AGG - chr1_4:13098790-13098809 Msa0151160:intron 30.0%
!!! TTAGTTTTGTTGTTGGTGAT+GGG + chr1_4:13099054-13099073 None:intergenic 30.0%
!!! TTTAGTTTTGTTGTTGGTGA+TGG + chr1_4:13099055-13099074 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr1_4:13099664-13099683 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr1_4:13099663-13099682 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr1_4:13099249-13099268 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr1_4:13099508-13099527 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr1_4:13099663-13099682 Msa0151160:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr1_4:13099664-13099683 Msa0151160:CDS 30.0%
TAATTAAGATACCTCCTCTT+TGG - chr1_4:13099744-13099763 Msa0151160:intron 30.0%
TGGTAAGTCTCATAATCTAA+CGG + chr1_4:13099808-13099827 None:intergenic 30.0%
CTTGAAGAAATCAACAACAA+AGG + chr1_4:13100090-13100109 None:intergenic 30.0%
GTTTCTACAGAATGTGAAAT+TGG + chr1_4:13100173-13100192 None:intergenic 30.0%
CACATTCTGTAGAAACATTA+AGG - chr1_4:13100177-13100196 Msa0151160:intron 30.0%
! TAGAAACATTAAGGCTTGTT+TGG - chr1_4:13100186-13100205 Msa0151160:intron 30.0%
! GAAGTGTTTGGTAAAATTAG+CGG - chr1_4:13100291-13100310 Msa0151160:intron 30.0%
GTGTAATAATAGACGGTTAT+TGG - chr1_4:13100515-13100534 Msa0151160:intron 30.0%
CAATTGTAAAATACAGCTGA+AGG - chr1_4:13100756-13100775 Msa0151160:intron 30.0%
! CTATAAGCTATAAGCTCTTT+TGG - chr1_4:13101185-13101204 Msa0151160:intron 30.0%
ATGTGGATTTGTCAGAATTA+CGG - chr1_4:13101353-13101372 Msa0151160:intron 30.0%
ACAAGTAGTATTCGACTATT+CGG - chr1_4:13101570-13101589 Msa0151160:intron 30.0%
!! CACATTTGATTTCCGTTTTA+AGG + chr1_4:13101715-13101734 None:intergenic 30.0%
ACCATTCATGTTTAAGTATG+AGG + chr1_4:13101838-13101857 None:intergenic 30.0%
ATAGACGCACAAATATATTG+TGG - chr1_4:13101911-13101930 Msa0151160:intron 30.0%
ACAAATATATTGTGGAGACT+GGG - chr1_4:13101919-13101938 Msa0151160:intron 30.0%
GCATAATCCTAATAACAGAA+GGG + chr1_4:13101972-13101991 None:intergenic 30.0%
! TTGAAACAATCTGAAGTAAG+AGG + chr1_4:13102044-13102063 None:intergenic 30.0%
!!! CTATTTTAGAATCAAAGACG+TGG + chr1_4:13102114-13102133 None:intergenic 30.0%
AAACAACTAGATATCACATC+TGG + chr1_4:13102561-13102580 None:intergenic 30.0%
! GTGTAAACCATATTGTTGTT+TGG + chr1_4:13102774-13102793 None:intergenic 30.0%
GTTATCATAGGAATGGAATA+AGG + chr1_4:13102864-13102883 None:intergenic 30.0%
TGGTTATGTTATCATAGGAA+TGG + chr1_4:13102871-13102890 None:intergenic 30.0%
! GGACTTGGTTATGTTATTAT+AGG + chr1_4:13102959-13102978 None:intergenic 30.0%
!! GACTTGTTTGCTTTTGATTA+AGG - chr1_4:13103146-13103165 Msa0151160:intron 30.0%
TATTTCAAGGGAAGTTAACA+GGG + chr1_4:13103284-13103303 None:intergenic 30.0%
!! GCATTTAATTTTATGCTCTG+CGG + chr1_4:13103495-13103514 None:intergenic 30.0%
! TTTCTGAAAATGTTGATCGT+AGG + chr1_4:13103995-13104014 None:intergenic 30.0%
ATTTAGCAATTCACTGAAAG+TGG + chr1_4:13104104-13104123 None:intergenic 30.0%
AATGTTTGGCCTAATTTACT+AGG + chr1_4:13104139-13104158 None:intergenic 30.0%
AGTAAATTAGGCCAAACATT+AGG - chr1_4:13104139-13104158 Msa0151160:intron 30.0%
ATCAAATGACCTAATGATGA+TGG + chr1_4:13104178-13104197 None:intergenic 30.0%
! ATTAGGTCATTTGATTTCCA+TGG - chr1_4:13104183-13104202 Msa0151160:intron 30.0%
! CTTTGGTAATTATGAAGTCA+AGG + chr1_4:13104324-13104343 None:intergenic 30.0%
ATCAGAAGATATGTAAGCTT+TGG + chr1_4:13104341-13104360 None:intergenic 30.0%
AAAGCTTACATATCTTCTGA+TGG - chr1_4:13104340-13104359 Msa0151160:intron 30.0%
TATATACATCAATGCATTGC+TGG + chr1_4:13104412-13104431 None:intergenic 30.0%
ATGAACAGTATTTCATGTCA+CGG - chr1_4:13104607-13104626 Msa0151160:intron 30.0%
AGCATGTCAAATAAAAATCG+AGG + chr1_4:13104703-13104722 None:intergenic 30.0%
!! AGTAGGCTTTATCTTTGTTT+TGG - chr1_4:13104756-13104775 Msa0151160:intron 30.0%
GGAAAAGAAACCTAAGTATA+TGG - chr1_4:13104777-13104796 Msa0151160:intron 30.0%
AATCATGCTACCATATACTT+AGG + chr1_4:13104790-13104809 None:intergenic 30.0%
TGTAATGCACTTACAATCTT+TGG - chr1_4:13104894-13104913 Msa0151160:intron 30.0%
CAGAATTTATAAACACAGCT+AGG - chr1_4:13104918-13104937 Msa0151160:intron 30.0%
ACTATGAACACTATCAGTAA+GGG + chr1_4:13104967-13104986 None:intergenic 30.0%
AACTATGAACACTATCAGTA+AGG + chr1_4:13104968-13104987 None:intergenic 30.0%
! TTCACAACTAGTTGATACAA+GGG + chr1_4:13105109-13105128 None:intergenic 30.0%
TGAACATTTAAATAGGCTCT+AGG - chr1_4:13105125-13105144 Msa0151160:intron 30.0%
TTGTTGCATCATTGACATAA+AGG + chr1_4:13105358-13105377 None:intergenic 30.0%
TAGGAAACAAAAATATTGCG+AGG - chr1_4:13105939-13105958 Msa0151160:intron 30.0%
CAAAACCTAAAAACAAGATG+AGG - chr1_4:13106086-13106105 Msa0151160:intron 30.0%
!!! AAAACCCTCATCTTGTTTTT+AGG + chr1_4:13106094-13106113 None:intergenic 30.0%
! TGAGGGTTTTGCAATTAAAA+CGG - chr1_4:13106104-13106123 Msa0151160:intron 30.0%
GTTCAAGGATCAAAACATTA+GGG + chr1_4:13106167-13106186 None:intergenic 30.0%
TGTTCAAGGATCAAAACATT+AGG + chr1_4:13106168-13106187 None:intergenic 30.0%
! ATAGCTACTCTAGTTTGAAT+TGG - chr1_4:13106252-13106271 Msa0151160:intron 30.0%
GTTTATTTGAGCTTATCTAC+TGG - chr1_4:13106274-13106293 Msa0151160:intron 30.0%
GTTGTTCTCATAAACTATCT+TGG + chr1_4:13106390-13106409 None:intergenic 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG - chr1_4:13106471-13106490 Msa0151160:intron 30.0%
! TTAAGTTGTTTATCCCAACA+GGG - chr1_4:13106472-13106491 Msa0151160:intron 30.0%
! TTTGAGGTAGAATGACAAAA+TGG - chr1_4:13106578-13106597 Msa0151160:intron 30.0%
TAGTGACTTAATGTTTCTCT+TGG - chr1_4:13106831-13106850 Msa0151160:intron 30.0%
AAGAACACATATGAAGCTAT+GGG + chr1_4:13106866-13106885 None:intergenic 30.0%
GATTTGAATGATATTACGTG+TGG + chr1_4:13107135-13107154 None:intergenic 30.0%
!!! CCTTCATATTTTGAGGTTAT+AGG + chr1_4:13107158-13107177 None:intergenic 30.0%
CCTATAACCTCAAAATATGA+AGG - chr1_4:13107155-13107174 Msa0151160:intron 30.0%
CCTGTAAGATATAAAAACTG+TGG + chr1_4:13107320-13107339 None:intergenic 30.0%
! CCACAGTTTTTATATCTTAC+AGG - chr1_4:13107317-13107336 Msa0151160:intron 30.0%
ATATCTTACAGGACTATAGA+TGG - chr1_4:13107328-13107347 Msa0151160:intron 30.0%
! AACATCTTACAAGCATTGTT+TGG + chr1_4:13108067-13108086 None:intergenic 30.0%
GAGTGTGTTGTATTTATACA+AGG - chr1_4:13108172-13108191 Msa0151160:five_prime_UTR 30.0%
! GACATTTGAAGTATATATGC+AGG - chr1_4:13108200-13108219 Msa0151160:five_prime_UTR 30.0%
!! ACAATAGAACATTTGGGTTG+GGG + chr1_4:13096827-13096846 None:intergenic 35.0%
TATTGTTTGTCATTCCAACG+TGG - chr1_4:13096841-13096860 Msa0151160:three_prime_UTR 35.0%
TTCTATTATGCTATCCACGT+TGG + chr1_4:13096858-13096877 None:intergenic 35.0%
AATCCTTAGCTAAACTTTGG+AGG - chr1_4:13096945-13096964 Msa0151160:exon 35.0%
GTGAAGAATTAAGAGTCTTG+GGG - chr1_4:13096970-13096989 Msa0151160:CDS 35.0%
!! GAACAATTTTTCAAAGAGGG+AGG + chr1_4:13097407-13097426 None:intergenic 35.0%
AGCATGAAATTGCTCTGTAT+AGG - chr1_4:13097452-13097471 Msa0151160:intron 35.0%
!! TGAAGTGAGTTTGAGTTTTG+TGG - chr1_4:13097496-13097515 Msa0151160:intron 35.0%
AAGGAGTTGGAGTAAAAAGT+GGG + chr1_4:13098136-13098155 None:intergenic 35.0%
ATTAAGTGAGGATGACTACA+TGG - chr1_4:13098231-13098250 Msa0151160:CDS 35.0%
ACTATATGCATAGAAAGACC+TGG + chr1_4:13098364-13098383 None:intergenic 35.0%
! AAGGAGAGTATATTGTATGG+AGG + chr1_4:13098398-13098417 None:intergenic 35.0%
TGTTGGAAAATAAGCTTAGG+TGG + chr1_4:13098463-13098482 None:intergenic 35.0%
TGACTACAAAGAGAGAGTTA+GGG + chr1_4:13098507-13098526 None:intergenic 35.0%
ATGACTACAAAGAGAGAGTT+AGG + chr1_4:13098508-13098527 None:intergenic 35.0%
!!! CGCTTATTTTACTCGCATAT+TGG - chr1_4:13098581-13098600 Msa0151160:intron 35.0%
CTTGTTCATCAAATCGTCAT+TGG + chr1_4:13098852-13098871 None:intergenic 35.0%
ATGACGATTTGATGAACAAG+TGG - chr1_4:13098852-13098871 Msa0151160:intron 35.0%
TGACGATTTGATGAACAAGT+GGG - chr1_4:13098853-13098872 Msa0151160:intron 35.0%
GGGTGTTTGAACTTACATAT+TGG - chr1_4:13098874-13098893 Msa0151160:intron 35.0%
GTAAATTGAAGACGTGACTT+CGG + chr1_4:13098921-13098940 None:intergenic 35.0%
GAAGTCACGTCTTCAATTTA+CGG - chr1_4:13098920-13098939 Msa0151160:intron 35.0%
!!! TTACGGAGCCTCAATTTTTT+TGG - chr1_4:13098937-13098956 Msa0151160:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr1_4:13099648-13099667 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr1_4:13099648-13099667 Msa0151160:CDS 35.0%
ATGAGACTTACCAGATGTTA+AGG - chr1_4:13099815-13099834 Msa0151160:intron 35.0%
ACATGACTTACCTTAACATC+TGG + chr1_4:13099828-13099847 None:intergenic 35.0%
! TGGTTTTTCATCCAACATGA+CGG + chr1_4:13099890-13099909 None:intergenic 35.0%
AGTTTGACCATTTCATCTGT+CGG + chr1_4:13100009-13100028 None:intergenic 35.0%
CGAAGAAGTTCAGATTGATT+AGG + chr1_4:13100038-13100057 None:intergenic 35.0%
! GGCTTGTTTGGTAAAAATAG+CGG - chr1_4:13100198-13100217 Msa0151160:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - chr1_4:13100279-13100298 Msa0151160:intron 35.0%
GAGACACAGTAGTATTTATG+AGG - chr1_4:13100938-13100957 Msa0151160:intron 35.0%
TTGACAAAAAAAGCCCTGTT+TGG + chr1_4:13101152-13101171 None:intergenic 35.0%
! TAAGCTATAAGCTCTTTTGG+TGG - chr1_4:13101188-13101207 Msa0151160:intron 35.0%
! AGTTTTACTAAGGGTCTGTT+TGG + chr1_4:13101219-13101238 None:intergenic 35.0%
!! AGAGTGTTGATGATAGTTGT+TGG + chr1_4:13101307-13101326 None:intergenic 35.0%
!!! TGATTTCCGTTTTAAGGGAA+AGG + chr1_4:13101709-13101728 None:intergenic 35.0%
TCAGTTTGACATCAAACTGA+AGG - chr1_4:13101774-13101793 Msa0151160:intron 35.0%
ACTGAAGGCTATTAGACATA+TGG - chr1_4:13101789-13101808 Msa0151160:intron 35.0%
AAGGCTATTAGACATATGGA+GGG - chr1_4:13101793-13101812 Msa0151160:intron 35.0%
CATGTTTAAGTATGAGGCTA+AGG + chr1_4:13101832-13101851 None:intergenic 35.0%
GCCTCATACTTAAACATGAA+TGG - chr1_4:13101834-13101853 Msa0151160:intron 35.0%
CTACACACTCGTCATTTAAA+TGG - chr1_4:13101879-13101898 Msa0151160:intron 35.0%
CACTCGTCATTTAAATGGTT+CGG - chr1_4:13101884-13101903 Msa0151160:intron 35.0%
CACAAATATATTGTGGAGAC+TGG - chr1_4:13101918-13101937 Msa0151160:intron 35.0%
GGCATAATCCTAATAACAGA+AGG + chr1_4:13101973-13101992 None:intergenic 35.0%
CATCTAACTATCCTGCATTT+GGG - chr1_4:13102261-13102280 Msa0151160:intron 35.0%
TGCATCTAATAATCCTTCAG+TGG - chr1_4:13102372-13102391 Msa0151160:intron 35.0%
AAATGAGCAGAGAGATATAG+AGG - chr1_4:13102440-13102459 Msa0151160:intron 35.0%
AATGAGCAGAGAGATATAGA+GGG - chr1_4:13102441-13102460 Msa0151160:intron 35.0%
AAGCAAACACTATCACTGTT+GGG + chr1_4:13102673-13102692 None:intergenic 35.0%
TGAAGTCCCAAACAACAATA+TGG - chr1_4:13102764-13102783 Msa0151160:intron 35.0%
! GTATCGATACATATGACCTT+TGG - chr1_4:13102814-13102833 Msa0151160:intron 35.0%
! GGACTTGGTTATGTTATCAT+AGG + chr1_4:13102876-13102895 None:intergenic 35.0%
GGAATAAGGTTTCATAGCAA+AGG + chr1_4:13102933-13102952 None:intergenic 35.0%
TTATTGTATCTCACCCAGTA+AGG - chr1_4:13103066-13103085 Msa0151160:intron 35.0%
AGCAAACAAGTCTAGTTAGA+GGG + chr1_4:13103138-13103157 None:intergenic 35.0%
AAGCAAACAAGTCTAGTTAG+AGG + chr1_4:13103139-13103158 None:intergenic 35.0%
AGCAATTTATTGACGAGAGA+AGG - chr1_4:13103177-13103196 Msa0151160:intron 35.0%
AATTTATTGACGAGAGAAGG+TGG - chr1_4:13103180-13103199 Msa0151160:intron 35.0%
GTTGAATGGCAAAAGTTTGT+TGG - chr1_4:13103202-13103221 Msa0151160:intron 35.0%
GTATTTCAAGGGAAGTTAAC+AGG + chr1_4:13103285-13103304 None:intergenic 35.0%
TTACACTCCTTGTGAAATTG+AGG - chr1_4:13103617-13103636 Msa0151160:intron 35.0%
CCATATACCTCAATTTCACA+AGG + chr1_4:13103627-13103646 None:intergenic 35.0%
CCTTGTGAAATTGAGGTATA+TGG - chr1_4:13103624-13103643 Msa0151160:intron 35.0%
TGTGAAATTGAGGTATATGG+TGG - chr1_4:13103627-13103646 Msa0151160:intron 35.0%
GTGAAATTGAGGTATATGGT+GGG - chr1_4:13103628-13103647 Msa0151160:intron 35.0%
!! AAACTCTGTTTCTAATTCGC+AGG - chr1_4:13103688-13103707 Msa0151160:intron 35.0%
!! AACTCTGTTTCTAATTCGCA+GGG - chr1_4:13103689-13103708 Msa0151160:intron 35.0%
GCAAATCAAGACTCAAAAAG+AGG + chr1_4:13103804-13103823 None:intergenic 35.0%
!! AGTCTTGATTTGCTATCTGA+AGG - chr1_4:13103811-13103830 Msa0151160:intron 35.0%
!!! TCACTGAAAGTGGTTTTAAC+AGG + chr1_4:13104094-13104113 None:intergenic 35.0%
! TGATTTCCATGGTTTTCACA+TGG - chr1_4:13104194-13104213 Msa0151160:intron 35.0%
TTATCTCCATGTGAAAACCA+TGG + chr1_4:13104203-13104222 None:intergenic 35.0%
!! ATTGATAGCGTCAATAAACC+CGG - chr1_4:13104265-13104284 Msa0151160:intron 35.0%
ACATATCTTCTGATGGTAGT+TGG - chr1_4:13104347-13104366 Msa0151160:intron 35.0%
! TTCTGATGGTAGTTGGTTTA+TGG - chr1_4:13104354-13104373 Msa0151160:intron 35.0%
! AGAGTAGCAATGCTTTTAGT+AGG - chr1_4:13104739-13104758 Msa0151160:intron 35.0%
AGTGCATTACACACTCAAAA+GGG + chr1_4:13104885-13104904 None:intergenic 35.0%
AAGTGCATTACACACTCAAA+AGG + chr1_4:13104886-13104905 None:intergenic 35.0%
AAGGGAATTTCTACTGTGTT+TGG + chr1_4:13104949-13104968 None:intergenic 35.0%
AGTCTGTTTAGGAAATAGCA+GGG + chr1_4:13105029-13105048 None:intergenic 35.0%
! GTTCACAACTAGTTGATACA+AGG + chr1_4:13105110-13105129 None:intergenic 35.0%
ATATCTCAGACAAAAGACCT+GGG + chr1_4:13105259-13105278 None:intergenic 35.0%
TATCAGCAAACAACATTTGG+TGG + chr1_4:13105526-13105545 None:intergenic 35.0%
! ACCAAATGTTGTTTGCTGAT+AGG - chr1_4:13105525-13105544 Msa0151160:intron 35.0%
! CCAAATGTTGTTTGCTGATA+GGG - chr1_4:13105526-13105545 Msa0151160:intron 35.0%
TTAGTGTGAGATGCAAAGAT+CGG - chr1_4:13105657-13105676 Msa0151160:intron 35.0%
TCTTGTAAGCCAAATCCTTA+GGG - chr1_4:13105878-13105897 Msa0151160:intron 35.0%
TGTTTACAAACTACACCCTA+AGG + chr1_4:13105896-13105915 None:intergenic 35.0%
!!! GAGGAATTTTTTAGTTCAGC+TGG - chr1_4:13105958-13105977 Msa0151160:intron 35.0%
GCAAACAAATGATGTGTTCA+AGG + chr1_4:13106182-13106201 None:intergenic 35.0%
TTAGCACTTGTGAAACTGTT+TGG - chr1_4:13106299-13106318 Msa0151160:intron 35.0%
TAGCACTTGTGAAACTGTTT+GGG - chr1_4:13106300-13106319 Msa0151160:intron 35.0%
TCTCATAAACTATCTTGGAG+AGG + chr1_4:13106385-13106404 None:intergenic 35.0%
ACATAGTATTAGTCCCTGTT+GGG + chr1_4:13106488-13106507 None:intergenic 35.0%
AACATAGTATTAGTCCCTGT+TGG + chr1_4:13106489-13106508 None:intergenic 35.0%
! TTTGAAGTATGTAGTAAGGG+AGG - chr1_4:13106507-13106526 Msa0151160:intron 35.0%
!! ATTCTTAGGAGTACTTCATC+AGG - chr1_4:13106631-13106650 Msa0151160:intron 35.0%
TATTCAAAGAAGAGTAAGCG+AGG - chr1_4:13106722-13106741 Msa0151160:intron 35.0%
AATAGACAAGGATGAACTTC+TGG - chr1_4:13106794-13106813 Msa0151160:intron 35.0%
AGAACACATATGAAGCTATG+GGG + chr1_4:13106865-13106884 None:intergenic 35.0%
GAAGAACACATATGAAGCTA+TGG + chr1_4:13106867-13106886 None:intergenic 35.0%
!! TTGTTTTGTTGCGAATGGTA+CGG - chr1_4:13106994-13107013 Msa0151160:intron 35.0%
AATGGTACGGTATACATACA+TGG - chr1_4:13107007-13107026 Msa0151160:intron 35.0%
TCGAGCATAAATATGACTGA+TGG + chr1_4:13107442-13107461 None:intergenic 35.0%
ATTTAGTCCTTTCTCTCCTA+TGG + chr1_4:13107721-13107740 None:intergenic 35.0%
TTCTATGTGAGAGATGCATA+TGG - chr1_4:13107744-13107763 Msa0151160:intron 35.0%
CAATGATGTTCATATCCACA+GGG + chr1_4:13107773-13107792 None:intergenic 35.0%
TCAATGATGTTCATATCCAC+AGG + chr1_4:13107774-13107793 None:intergenic 35.0%
CTAGAGTAAGCTTCTTCTTT+GGG - chr1_4:13107886-13107905 Msa0151160:five_prime_UTR 35.0%
AAGTTGTTGTGTGTCAAACT+TGG - chr1_4:13108009-13108028 Msa0151160:five_prime_UTR 35.0%
ACATGTTATGATAGGGAAGA+TGG + chr1_4:13108099-13108118 None:intergenic 35.0%
GAGATGGACATGTTATGATA+GGG + chr1_4:13108106-13108125 None:intergenic 35.0%
TGAGATGGACATGTTATGAT+AGG + chr1_4:13108107-13108126 None:intergenic 35.0%
TATGCACTACTTAGCATACG+TGG - chr1_4:13096663-13096682 Msa0151160:three_prime_UTR 40.0%
CATACGTGGAAGTTTACCAT+TGG - chr1_4:13096677-13096696 Msa0151160:three_prime_UTR 40.0%
CATCCTCCAAAGTTTAGCTA+AGG + chr1_4:13096951-13096970 None:intergenic 40.0%
AGAATTAAGAGTCTTGGGGT+TGG - chr1_4:13096974-13096993 Msa0151160:CDS 40.0%
!!! GGGGTTGGACTTTTTTCTTT+TGG - chr1_4:13096989-13097008 Msa0151160:CDS 40.0%
!! GAGGAGTGCTAAATACTACA+GGG + chr1_4:13097388-13097407 None:intergenic 40.0%
CAAAGCGTGATTATCTCTGA+TGG - chr1_4:13097596-13097615 Msa0151160:intron 40.0%
GATCACAAGATAATACCACC+AGG + chr1_4:13097622-13097641 None:intergenic 40.0%
CAAGGAGTTGGAGTAAAAAG+TGG + chr1_4:13098137-13098156 None:intergenic 40.0%
GATATGAGTTTGCAAGGAGT+TGG + chr1_4:13098149-13098168 None:intergenic 40.0%
GGACTAGATATGAGTTTGCA+AGG + chr1_4:13098155-13098174 None:intergenic 40.0%
! CAATGAGTTGGATCGAAGTA+TGG + chr1_4:13098302-13098321 None:intergenic 40.0%
! ATCGTCATTGGAGTTTTCCA+CGG + chr1_4:13098840-13098859 None:intergenic 40.0%
GACGATTTGATGAACAAGTG+GGG - chr1_4:13098854-13098873 Msa0151160:intron 40.0%
TACATATTGGTGAACCAAGC+AGG - chr1_4:13098887-13098906 Msa0151160:intron 40.0%
ACATATTGGTGAACCAAGCA+GGG - chr1_4:13098888-13098907 Msa0151160:intron 40.0%
TTAAGATACCTCCTCTTTGG+TGG - chr1_4:13099747-13099766 Msa0151160:intron 40.0%
GTCTCATAATCTAACGGTGA+CGG + chr1_4:13099802-13099821 None:intergenic 40.0%
TTTCATCCAACATGACGGTA+CGG + chr1_4:13099885-13099904 None:intergenic 40.0%
! ATCAATGAAGAAGATGGTGG+TGG + chr1_4:13099913-13099932 None:intergenic 40.0%
TGGATCAATGAAGAAGATGG+TGG + chr1_4:13099916-13099935 None:intergenic 40.0%
! CCATGTAAGCTAGGATTTTG+CGG + chr1_4:13099939-13099958 None:intergenic 40.0%
ATCTTCATGCCATGTAAGCT+AGG + chr1_4:13099948-13099967 None:intergenic 40.0%
ATCAACAACAAAGGCTCTCA+AGG + chr1_4:13100081-13100100 None:intergenic 40.0%
CGCGTGAAAGATGATTAGAT+TGG - chr1_4:13100114-13100133 Msa0151160:intron 40.0%
CTATAAGCTCAAACGCTACT+TGG - chr1_4:13101050-13101069 Msa0151160:intron 40.0%
TACTAAGGGTCTGTTTGGTA+AGG + chr1_4:13101214-13101233 None:intergenic 40.0%
ATCAACACTCTGTGCATGTT+TGG - chr1_4:13101316-13101335 Msa0151160:intron 40.0%
!!! TGGTGGTTTTGTCAGAATCA+CGG - chr1_4:13101419-13101438 Msa0151160:intron 40.0%
!! GAAACTTTGGAGCAAATGTG+TGG + chr1_4:13101526-13101545 None:intergenic 40.0%
TGCGTGCACACAATTTACAT+CGG - chr1_4:13101683-13101702 Msa0151160:exon 40.0%
GAAGGCTATTAGACATATGG+AGG - chr1_4:13101792-13101811 Msa0151160:intron 40.0%
AGGCTATTAGACATATGGAG+GGG - chr1_4:13101794-13101813 Msa0151160:intron 40.0%
ATATGGAGGGGTTGAGTTTA+AGG - chr1_4:13101806-13101825 Msa0151160:intron 40.0%
CTAATAACAGAAGGGAAGAC+CGG + chr1_4:13101964-13101983 None:intergenic 40.0%
GTAAGAGGACTCAATGTTGT+GGG + chr1_4:13102029-13102048 None:intergenic 40.0%
AGTAAGAGGACTCAATGTTG+TGG + chr1_4:13102030-13102049 None:intergenic 40.0%
TTACCAAATACATGGTCACC+TGG + chr1_4:13102190-13102209 None:intergenic 40.0%
ATGCAGGGTTACCAAATACA+TGG + chr1_4:13102198-13102217 None:intergenic 40.0%
ATGCACGATTACTAGATGCA+GGG + chr1_4:13102213-13102232 None:intergenic 40.0%
CATCTTTGTGATCCTGCATT+TGG - chr1_4:13102230-13102249 Msa0151160:intron 40.0%
ATGCAGGATAGTTAGATGCA+GGG + chr1_4:13102259-13102278 None:intergenic 40.0%
AATGCAGGATAGTTAGATGC+AGG + chr1_4:13102260-13102279 None:intergenic 40.0%
GCATCTAACTATCCTGCATT+TGG - chr1_4:13102260-13102279 Msa0151160:intron 40.0%
ATGCAGAGCTACCAGATAAA+GGG + chr1_4:13102290-13102309 None:intergenic 40.0%
AATGCAGAGCTACCAGATAA+AGG + chr1_4:13102291-13102310 None:intergenic 40.0%
! TTATCTGGTAGCTCTGCATT+CGG - chr1_4:13102291-13102310 Msa0151160:intron 40.0%
ATGCAGGATTGTTAGATGCA+AGG + chr1_4:13102320-13102339 None:intergenic 40.0%
AATGCACATTCACAAGATGC+AGG + chr1_4:13102336-13102355 None:intergenic 40.0%
GCATCTTGTGAATGTGCATT+TGG - chr1_4:13102336-13102355 Msa0151160:intron 40.0%
ATTATTAGATGCACCGTGCA+CGG + chr1_4:13102365-13102384 None:intergenic 40.0%
CAAGCAAACACTATCACTGT+TGG + chr1_4:13102674-13102693 None:intergenic 40.0%
ACTGTCTGTCACATAGTCAT+GGG - chr1_4:13102792-13102811 Msa0151160:intron 40.0%
AGAGCAACAGACCATAGAAA+AGG + chr1_4:13103016-13103035 None:intergenic 40.0%
GAGATACAATAAGCACATGG+AGG + chr1_4:13103058-13103077 None:intergenic 40.0%
GGTGAGATACAATAAGCACA+TGG + chr1_4:13103061-13103080 None:intergenic 40.0%
GTAGAATTCACTGCCTTACT+GGG + chr1_4:13103082-13103101 None:intergenic 40.0%
TGTAGAATTCACTGCCTTAC+TGG + chr1_4:13103083-13103102 None:intergenic 40.0%
CAAACAAGTCTAGTTAGAGG+GGG + chr1_4:13103136-13103155 None:intergenic 40.0%
GCAAACAAGTCTAGTTAGAG+GGG + chr1_4:13103137-13103156 None:intergenic 40.0%
TCGTACTCAGGATCAAAGTA+TGG + chr1_4:13103228-13103247 None:intergenic 40.0%
TGACATCGACCTTGTAACAA+AGG + chr1_4:13103569-13103588 None:intergenic 40.0%
TGTAACCTATGACACCACTA+GGG + chr1_4:13103602-13103621 None:intergenic 40.0%
CATAAACGAGCAACTTCTTC+TGG + chr1_4:13103666-13103685 None:intergenic 40.0%
CAGAAGAAGTTGCTCGTTTA+TGG - chr1_4:13103664-13103683 Msa0151160:intron 40.0%
CCTTGATCAGTGTACAATCA+TGG + chr1_4:13103737-13103756 None:intergenic 40.0%
CCATGATTGTACACTGATCA+AGG - chr1_4:13103734-13103753 Msa0151160:intron 40.0%
CAAGTGACTTAAAACTCCAG+TGG + chr1_4:13103845-13103864 None:intergenic 40.0%
TTTAAGTCACTTGTGTCCTG+TGG - chr1_4:13103852-13103871 Msa0151160:intron 40.0%
CAATAAACCCGGAATTCTTC+TGG - chr1_4:13104276-13104295 Msa0151160:intron 40.0%
TTATGAAGTCAAGGTCTGTC+AGG + chr1_4:13104315-13104334 None:intergenic 40.0%
! GATGGTAGTTGGTTTATGGA+TGG - chr1_4:13104358-13104377 Msa0151160:intron 40.0%
GAATGTGTATGTTGTAGGCA+AGG + chr1_4:13104525-13104544 None:intergenic 40.0%
AGCACGAATGTGTATGTTGT+AGG + chr1_4:13104530-13104549 None:intergenic 40.0%
GTGCATTACACACTCAAAAG+GGG + chr1_4:13104884-13104903 None:intergenic 40.0%
GAGTCTGTTTAGGAAATAGC+AGG + chr1_4:13105030-13105049 None:intergenic 40.0%
!! TAAATAGGCTCTAGGACCAA+AGG - chr1_4:13105133-13105152 Msa0151160:intron 40.0%
!! AAATAGGCTCTAGGACCAAA+GGG - chr1_4:13105134-13105153 Msa0151160:intron 40.0%
GATATCTCAGACAAAAGACC+TGG + chr1_4:13105260-13105279 None:intergenic 40.0%
CAGCTGCAATCACATTGAAT+TGG + chr1_4:13105301-13105320 None:intergenic 40.0%
ATGTGATTGCAGCTGAAGTT+TGG - chr1_4:13105306-13105325 Msa0151160:intron 40.0%
CTGAAGTTTGGACACATAAC+AGG - chr1_4:13105318-13105337 Msa0151160:intron 40.0%
TTGTGAGGATGATGAGAATG+TGG - chr1_4:13105448-13105467 Msa0151160:intron 40.0%
CCCTATCAGCAAACAACATT+TGG + chr1_4:13105529-13105548 None:intergenic 40.0%
TGAAGAAAAAGGCTACTCAG+TGG - chr1_4:13105634-13105653 Msa0151160:intron 40.0%
TAGTGTGAGATGCAAAGATC+GGG - chr1_4:13105658-13105677 Msa0151160:intron 40.0%
ATGCATACCTGTGAAGCATA+TGG + chr1_4:13105764-13105783 None:intergenic 40.0%
GTCTTGTAAGCCAAATCCTT+AGG - chr1_4:13105877-13105896 Msa0151160:intron 40.0%
CAAACTACACCCTAAGGATT+TGG + chr1_4:13105890-13105909 None:intergenic 40.0%
! CAAGGATGAACTTCTGGTTA+TGG - chr1_4:13106800-13106819 Msa0151160:intron 40.0%
! GAACTTCTGGTTATGGAACT+TGG - chr1_4:13106807-13106826 Msa0151160:intron 40.0%
!!! TCTGCTTGTTTTGTTGCGAA+TGG - chr1_4:13106989-13107008 Msa0151160:intron 40.0%
ATGGTCAGATACAATCTGAG+TGG + chr1_4:13107042-13107061 None:intergenic 40.0%
CATCGTATCCACCAATGAAT+CGG - chr1_4:13107059-13107078 Msa0151160:intron 40.0%
GATATTACGTGTGGAGCATA+AGG + chr1_4:13107126-13107145 None:intergenic 40.0%
ACTAGGATTCTACGAGAGAA+CGG - chr1_4:13107666-13107685 Msa0151160:intron 40.0%
AGAACGGCTTAACAGTTTGT+AGG - chr1_4:13107682-13107701 Msa0151160:intron 40.0%
GAACGGCTTAACAGTTTGTA+GGG - chr1_4:13107683-13107702 Msa0151160:intron 40.0%
!! GAAGCACTGCGTAAAGAAAT+TGG - chr1_4:13107792-13107811 Msa0151160:intron 40.0%
TGTGATGGTCAATGTGAAGA+AGG - chr1_4:13107821-13107840 Msa0151160:intron 40.0%
GCTAGAGTAAGCTTCTTCTT+TGG - chr1_4:13107885-13107904 Msa0151160:five_prime_UTR 40.0%
! CTTCTTCTTTGGGAACTTGT+TGG - chr1_4:13107896-13107915 Msa0151160:five_prime_UTR 40.0%
!! TCTTTGGGAACTTGTTGGAA+AGG - chr1_4:13107901-13107920 Msa0151160:five_prime_UTR 40.0%
! GTGGAAGTTTACCATTGGCT+TGG - chr1_4:13096682-13096701 Msa0151160:three_prime_UTR 45.0%
!! AACATTTGGGTTGGGGCATT+TGG + chr1_4:13096820-13096839 None:intergenic 45.0%
!! GGAGGAGTGCTAAATACTAC+AGG + chr1_4:13097389-13097408 None:intergenic 45.0%
! TCGTCATTGGAGTTTTCCAC+GGG + chr1_4:13098839-13098858 None:intergenic 45.0%
AATTGAAGACGTGACTTCGG+TGG + chr1_4:13098918-13098937 None:intergenic 45.0%
!! AATGAAGAAGATGGTGGTGG+TGG + chr1_4:13099910-13099929 None:intergenic 45.0%
CGGTGGATCAATGAAGAAGA+TGG + chr1_4:13099919-13099938 None:intergenic 45.0%
! TGTAAGCTAGGATTTTGCGG+TGG + chr1_4:13099936-13099955 None:intergenic 45.0%
CCGCAAAATCCTAGCTTACA+TGG - chr1_4:13099936-13099955 Msa0151160:intron 45.0%
GGCATGAAGATGAAGCAATC+CGG - chr1_4:13099957-13099976 Msa0151160:intron 45.0%
CTCTCAAGGAAAACACGTCA+AGG + chr1_4:13100067-13100086 None:intergenic 45.0%
GTGCATGTTTGGCATCATTG+TGG - chr1_4:13101327-13101346 Msa0151160:intron 45.0%
!!! TGGTTTTGTCAGAATCACGG+TGG - chr1_4:13101422-13101441 Msa0151160:intron 45.0%
GCAAATGTGTGGTATCGTGA+TGG + chr1_4:13101515-13101534 None:intergenic 45.0%
CATCGGCCTTTCCCTTAAAA+CGG - chr1_4:13101700-13101719 Msa0151160:five_prime_UTR 45.0%
! CTTACTCTTTTTCCACGAGC+CGG - chr1_4:13101942-13101961 Msa0151160:intron 45.0%
CGGTCTTCCCTTCTGTTATT+AGG - chr1_4:13101962-13101981 Msa0151160:intron 45.0%
GAGGCAGGTTGCAATTAAGA+AGG + chr1_4:13101994-13102013 None:intergenic 45.0%
! TCATAGGATTTTCCCTCACC+AGG - chr1_4:13102169-13102188 Msa0151160:intron 45.0%
AATACATGGTCACCTGGTGA+GGG + chr1_4:13102184-13102203 None:intergenic 45.0%
AAATACATGGTCACCTGGTG+AGG + chr1_4:13102185-13102204 None:intergenic 45.0%
TCACCAGGTGACCATGTATT+TGG - chr1_4:13102184-13102203 Msa0151160:intron 45.0%
GATGCACGATTACTAGATGC+AGG + chr1_4:13102214-13102233 None:intergenic 45.0%
ATAAAGGGTCACCCAAATGC+AGG + chr1_4:13102275-13102294 None:intergenic 45.0%
CATTTGGGTGACCCTTTATC+TGG - chr1_4:13102276-13102295 Msa0151160:intron 45.0%
AAAGGATCGTTCTCCACTGA+AGG + chr1_4:13102388-13102407 None:intergenic 45.0%
!! ATCCTTTGAAGTGCCAACAG+TGG - chr1_4:13102401-13102420 Msa0151160:intron 45.0%
CACTGTCTGTCACATAGTCA+TGG - chr1_4:13102791-13102810 Msa0151160:intron 45.0%
! AGGAGCATAACTGCAACCAA+AGG + chr1_4:13102833-13102852 None:intergenic 45.0%
TTGCTGAAGTTCTCGTACTC+AGG + chr1_4:13103240-13103259 None:intergenic 45.0%
GCAACAGAATCAATCCTCCA+AGG - chr1_4:13103256-13103275 Msa0151160:intron 45.0%
AAGTTAACAGGGAACCTTGG+AGG + chr1_4:13103273-13103292 None:intergenic 45.0%
GTCATCAGTTCAATCCCTAG+TGG - chr1_4:13103585-13103604 Msa0151160:intron 45.0%
!! TCAATCCCTAGTGGTGTCAT+AGG - chr1_4:13103594-13103613 Msa0151160:intron 45.0%
GTGTAACCTATGACACCACT+AGG + chr1_4:13103603-13103622 None:intergenic 45.0%
TCTAATTCGCAGGGTCTCTA+TGG - chr1_4:13103698-13103717 Msa0151160:intron 45.0%
GACTTAAAACTCCAGTGGCT+AGG + chr1_4:13103840-13103859 None:intergenic 45.0%
! TTGTGTCCTGTGGCTTTTTG+CGG - chr1_4:13103862-13103881 Msa0151160:intron 45.0%
ACTTGGGGTAGCCTAATGTT+TGG + chr1_4:13104153-13104172 None:intergenic 45.0%
AAACATTAGGCTACCCCAAG+TGG - chr1_4:13104152-13104171 Msa0151160:intron 45.0%
!! CTAATGATGATGGCCACTTG+GGG + chr1_4:13104168-13104187 None:intergenic 45.0%
!! CCTAATGATGATGGCCACTT+GGG + chr1_4:13104169-13104188 None:intergenic 45.0%
!! ACCTAATGATGATGGCCACT+TGG + chr1_4:13104170-13104189 None:intergenic 45.0%
ACGACTTCCAGAAGAATTCC+GGG + chr1_4:13104286-13104305 None:intergenic 45.0%
CACGACTTCCAGAAGAATTC+CGG + chr1_4:13104287-13104306 None:intergenic 45.0%
TGTTGTAGGCAAGGTTTGCA+TGG + chr1_4:13104516-13104535 None:intergenic 45.0%
TTTCATGTCACGGATCAGCA+AGG - chr1_4:13104617-13104636 Msa0151160:intron 45.0%
TACACACTCAAAAGGGGAGA+CGG + chr1_4:13104878-13104897 None:intergenic 45.0%
ATAGCAGGGTAGATACTAGC+AGG + chr1_4:13105015-13105034 None:intergenic 45.0%
TGAAGAGTTGGGAAGGCAAA+CGG - chr1_4:13105177-13105196 Msa0151160:intron 45.0%
CATACAGCCATTGAGCTCAT+TGG - chr1_4:13105224-13105243 Msa0151160:intron 45.0%
CATTGAATTGGAAGCTTGCC+AGG + chr1_4:13105289-13105308 None:intergenic 45.0%
TGATGCAACAAACCAAGCTG+CGG - chr1_4:13105367-13105386 Msa0151160:intron 45.0%
TTGAATCATCATCCGCAGCT+TGG + chr1_4:13105382-13105401 None:intergenic 45.0%
! GATAGGGATTATGAGAGTGC+TGG - chr1_4:13105542-13105561 Msa0151160:intron 45.0%
TTGATTCTCCTCCCTCTTTC+AGG - chr1_4:13105588-13105607 Msa0151160:intron 45.0%
TCGATATTGGGCCTGAAAGA+GGG + chr1_4:13105602-13105621 None:intergenic 45.0%
TTCGATATTGGGCCTGAAAG+AGG + chr1_4:13105603-13105622 None:intergenic 45.0%
TGTCTGCACTCTTACTGACA+TGG - chr1_4:13105700-13105719 Msa0151160:intron 45.0%
ATGCCTCCATCTCATCTGAA+GGG - chr1_4:13105738-13105757 Msa0151160:intron 45.0%
ATATGGCCCTTCAGATGAGA+TGG + chr1_4:13105747-13105766 None:intergenic 45.0%
TAGTTCAGCTGGCCAAATGA+AGG - chr1_4:13105969-13105988 Msa0151160:intron 45.0%
GATGCACACTTGACACTGAA+GGG - chr1_4:13106664-13106683 Msa0151160:intron 45.0%
ATGCACACTTGACACTGAAG+GGG - chr1_4:13106665-13106684 Msa0151160:intron 45.0%
ACACTGAAGGGGAGAAAGAA+AGG - chr1_4:13106676-13106695 Msa0151160:intron 45.0%
CACTGAAGGGGAGAAAGAAA+GGG - chr1_4:13106677-13106696 Msa0151160:intron 45.0%
CAAAACAAGCAGATAGCTGC+AGG + chr1_4:13106982-13107001 None:intergenic 45.0%
! CGATTCATTGGTGGATACGA+TGG + chr1_4:13107061-13107080 None:intergenic 45.0%
ATCCACCAATGAATCGGTGA+CGG - chr1_4:13107065-13107084 Msa0151160:intron 45.0%
!! ATCAACCGTCACCGATTCAT+TGG + chr1_4:13107073-13107092 None:intergenic 45.0%
! AATGAATCGGTGACGGTTGA+TGG - chr1_4:13107072-13107091 Msa0151160:intron 45.0%
TGTCGTTACCATTGATCCTC+TGG - chr1_4:13107576-13107595 Msa0151160:intron 45.0%
GTCGTTACCATTGATCCTCT+GGG - chr1_4:13107577-13107596 Msa0151160:intron 45.0%
TATCCTTTGCACACAGCTCA+AGG + chr1_4:13107623-13107642 None:intergenic 45.0%
CTGTGTGCAAAGGATAGAGT+GGG - chr1_4:13107627-13107646 Msa0151160:intron 45.0%
GTGTCAACCATAGGAGAGAA+AGG - chr1_4:13107711-13107730 Msa0151160:intron 45.0%
AGATGCATATGGAAACCCTG+TGG - chr1_4:13107755-13107774 Msa0151160:intron 45.0%
AGAAATTGGCCAGACTGTGA+TGG - chr1_4:13107806-13107825 Msa0151160:intron 45.0%
TCACATTGACCATCACAGTC+TGG + chr1_4:13107818-13107837 None:intergenic 45.0%
ACTTGGACAGTGCTTGAACT+TGG - chr1_4:13108026-13108045 Msa0151160:five_prime_UTR 45.0%
!! TAATTAACAAAAAAAAAAAA+AGG - chr1_4:13097755-13097774 Msa0151160:intron 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr1_4:13099603-13099622 Msa0151160:CDS 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr1_4:13099604-13099623 Msa0151160:CDS 5.0%
!! TTATATTAATAAATTGTAAT+GGG - chr1_4:13100964-13100983 Msa0151160:intron 5.0%
!!! ATTAACTATAATTTTTAATA+TGG + chr1_4:13104571-13104590 None:intergenic 5.0%
CGTGATTATCTCTGATGGCC+TGG - chr1_4:13097601-13097620 Msa0151160:intron 50.0%
GATTATCTCTGATGGCCTGG+TGG - chr1_4:13097604-13097623 Msa0151160:intron 50.0%
ATGACATGTTGTGCTACCCG+TGG - chr1_4:13098820-13098839 Msa0151160:intron 50.0%
!! ACCTCCTCTTTGGTGGTGTA+TGG - chr1_4:13099754-13099773 Msa0151160:intron 50.0%
!! CCTCCTCTTTGGTGGTGTAT+GGG - chr1_4:13099755-13099774 Msa0151160:intron 50.0%
!! CTCCTCTTTGGTGGTGTATG+GGG - chr1_4:13099756-13099775 Msa0151160:intron 50.0%
TTCCCCATACACCACCAAAG+AGG + chr1_4:13099761-13099780 None:intergenic 50.0%
!! GATGACGGAACAATCTGCAC+CGG + chr1_4:13099979-13099998 None:intergenic 50.0%
GTCGTCACCGACAGATGAAA+TGG - chr1_4:13099999-13100018 Msa0151160:intron 50.0%
TGGCATCATTGTGGCTCATG+TGG - chr1_4:13101336-13101355 Msa0151160:intron 50.0%
GCAAATGCCACGTGCATGTT+TGG - chr1_4:13101391-13101410 Msa0151160:intron 50.0%
CACGATACCAAACATGCACG+TGG + chr1_4:13101401-13101420 None:intergenic 50.0%
CACGTGCATGTTTGGTATCG+TGG - chr1_4:13101399-13101418 Msa0151160:intron 50.0%
GTGCATGTTTGGTATCGTGG+TGG - chr1_4:13101402-13101421 Msa0151160:intron 50.0%
GACTCAATGTTGTGGGCATG+CGG + chr1_4:13102022-13102041 None:intergenic 50.0%
GATGCAGGGTTACCAAATGC+AGG + chr1_4:13102245-13102264 None:intergenic 50.0%
! GTGCATTTGGTAACCGTGCA+CGG - chr1_4:13102349-13102368 Msa0151160:intron 50.0%
TGCCACTGTTGGCACTTCAA+AGG + chr1_4:13102406-13102425 None:intergenic 50.0%
AAGTGCCAACAGTGGCAACT+AGG - chr1_4:13102409-13102428 Msa0151160:intron 50.0%
AGTGCCAACAGTGGCAACTA+GGG - chr1_4:13102410-13102429 Msa0151160:intron 50.0%
TAGTCCCTAGTTGCCACTGT+TGG + chr1_4:13102417-13102436 None:intergenic 50.0%
GACGAGAGAAGGTGGTTGAA+TGG - chr1_4:13103188-13103207 Msa0151160:intron 50.0%
GGGAAGTTAACAGGGAACCT+TGG + chr1_4:13103276-13103295 None:intergenic 50.0%
TCTGAAGGAAACCTAGCCAC+TGG - chr1_4:13103826-13103845 Msa0151160:intron 50.0%
TTTGGTCCGCAAAAAGCCAC+AGG + chr1_4:13103871-13103890 None:intergenic 50.0%
CCCAAGTGGCCATCATCATT+AGG - chr1_4:13104166-13104185 Msa0151160:intron 50.0%
AGACGGGCATAGTGCTTAAC+TGG + chr1_4:13104861-13104880 None:intergenic 50.0%
ACACACTCAAAAGGGGAGAC+GGG + chr1_4:13104877-13104896 None:intergenic 50.0%
CCCAACTCTTCACACCTTCT+GGG + chr1_4:13105169-13105188 None:intergenic 50.0%
! CCCAGAAGGTGTGAAGAGTT+GGG - chr1_4:13105166-13105185 Msa0151160:intron 50.0%
TCCCAACTCTTCACACCTTC+TGG + chr1_4:13105170-13105189 None:intergenic 50.0%
! GAAGGTGTGAAGAGTTGGGA+AGG - chr1_4:13105170-13105189 Msa0151160:intron 50.0%
GAAGAGTTGGGAAGGCAAAC+GGG - chr1_4:13105178-13105197 Msa0151160:intron 50.0%
!! CGGGTTGGCATTCACTCAAT+TGG - chr1_4:13105197-13105216 Msa0151160:intron 50.0%
CAGCCATTGAGCTCATTGGT+CGG - chr1_4:13105228-13105247 Msa0151160:intron 50.0%
AGCCATTGAGCTCATTGGTC+GGG - chr1_4:13105229-13105248 Msa0151160:intron 50.0%
TCTCAGACAAAAGACCTGGG+CGG + chr1_4:13105256-13105275 None:intergenic 50.0%
! GTCTGAGATATCAGCTGTCC+TGG - chr1_4:13105268-13105287 Msa0151160:intron 50.0%
AAGCTCAACCACATCCTTCG+TGG - chr1_4:13105425-13105444 Msa0151160:intron 50.0%
CATCATCCTCACAACCACGA+AGG + chr1_4:13105442-13105461 None:intergenic 50.0%
AGGATGATGAGAATGTGGCC+CGG - chr1_4:13105453-13105472 Msa0151160:intron 50.0%
AACCCATGGAGAAACTGGTC+CGG + chr1_4:13105475-13105494 None:intergenic 50.0%
GGTGAAACCCATGGAGAAAC+TGG + chr1_4:13105480-13105499 None:intergenic 50.0%
!! AGGGATTATGAGAGTGCTGG+TGG - chr1_4:13105545-13105564 Msa0151160:intron 50.0%
ATATTGGGCCTGAAAGAGGG+AGG + chr1_4:13105599-13105618 None:intergenic 50.0%
CATGCCTCCATCTCATCTGA+AGG - chr1_4:13105737-13105756 Msa0151160:intron 50.0%
TGAAGGGCCATATGCTTCAC+AGG - chr1_4:13105754-13105773 Msa0151160:intron 50.0%
TACTTCATCAGGCACGTGGA+TGG - chr1_4:13106642-13106661 Msa0151160:intron 50.0%
GGATGCACACTTGACACTGA+AGG - chr1_4:13106663-13106682 Msa0151160:intron 50.0%
!! AACCGTCACCGATTCATTGG+TGG + chr1_4:13107070-13107089 None:intergenic 50.0%
ACCATTGATCCTCTGGGTGA+TGG - chr1_4:13107583-13107602 Msa0151160:intron 50.0%
TCCATCACCCAGAGGATCAA+TGG + chr1_4:13107587-13107606 None:intergenic 50.0%
GCTGTGTGCAAAGGATAGAG+TGG - chr1_4:13107626-13107645 Msa0151160:intron 50.0%
!! GCTTGCTGTCTGAAGTGACT+AGG - chr1_4:13107649-13107668 Msa0151160:intron 50.0%
GGCTTAACAGTTTGTAGGGC+AGG - chr1_4:13107687-13107706 Msa0151160:intron 50.0%
!! GGTTTCTGGTGCTTTGGTGT+TGG + chr1_4:13107853-13107872 None:intergenic 50.0%
!! TCGAGAGGTTTCTGGTGCTT+TGG + chr1_4:13107859-13107878 None:intergenic 50.0%
! AAAGCACCAGAAACCTCTCG+AGG - chr1_4:13107858-13107877 Msa0151160:intron 50.0%
ACCAGAAACCTCTCGAGGAT+GGG - chr1_4:13107863-13107882 Msa0151160:intron 50.0%
! TGGGTTGGGGCATTTGGCAA+TGG + chr1_4:13096814-13096833 None:intergenic 55.0%
TGAAGACGTGACTTCGGTGG+AGG + chr1_4:13098915-13098934 None:intergenic 55.0%
! GATGTGCGTGGGTTAAGCTC+AGG + chr1_4:13099032-13099051 None:intergenic 55.0%
!! GTTGGTGATGGGATGTGCGT+GGG + chr1_4:13099043-13099062 None:intergenic 55.0%
!! TGTTGGTGATGGGATGTGCG+TGG + chr1_4:13099044-13099063 None:intergenic 55.0%
CCCATACACCACCAAAGAGG+AGG + chr1_4:13099758-13099777 None:intergenic 55.0%
CATCCAACATGACGGTACGG+TGG + chr1_4:13099882-13099901 None:intergenic 55.0%
TCTGTCGGTGACGACGATGA+CGG + chr1_4:13099994-13100013 None:intergenic 55.0%
TTGTGGGCATGCGGTTAACG+AGG + chr1_4:13102013-13102032 None:intergenic 55.0%
TCACACCTTCTGGGCTCTTG+CGG + chr1_4:13105160-13105179 None:intergenic 55.0%
! GCCCAGAAGGTGTGAAGAGT+TGG - chr1_4:13105165-13105184 Msa0151160:intron 55.0%
AGTTGGGAAGGCAAACGGGT+TGG - chr1_4:13105182-13105201 Msa0151160:intron 55.0%
GTCCCGACCAATGAGCTCAA+TGG + chr1_4:13105234-13105253 None:intergenic 55.0%
CCTCACAACCACGAAGGATG+TGG + chr1_4:13105436-13105455 None:intergenic 55.0%
CCACATCCTTCGTGGTTGTG+AGG - chr1_4:13105433-13105452 Msa0151160:intron 55.0%
ACCCATGGAGAAACTGGTCC+GGG + chr1_4:13105474-13105493 None:intergenic 55.0%
GTGGGTGAAGGTGAAACCCA+TGG + chr1_4:13105489-13105508 None:intergenic 55.0%
GGGTTTCACCTTCACCCACA+TGG - chr1_4:13105490-13105509 Msa0151160:intron 55.0%
CCTTCTGTCCATGTGGGTGA+AGG + chr1_4:13105501-13105520 None:intergenic 55.0%
CCTTCACCCACATGGACAGA+AGG - chr1_4:13105498-13105517 Msa0151160:intron 55.0%
GTGGAGCCTTCTGTCCATGT+GGG + chr1_4:13105507-13105526 None:intergenic 55.0%
TGGCCCTTCAGATGAGATGG+AGG + chr1_4:13105744-13105763 None:intergenic 55.0%
! GGAGTACTTCATCAGGCACG+TGG - chr1_4:13106638-13106657 Msa0151160:intron 55.0%
!! ATCCTCTGGGTGATGGACAC+AGG - chr1_4:13107590-13107609 Msa0151160:intron 55.0%
!! TCCTCTGGGTGATGGACACA+GGG - chr1_4:13107591-13107610 Msa0151160:intron 55.0%
GAGCCTTGAGCTGTGTGCAA+AGG - chr1_4:13107617-13107636 Msa0151160:intron 55.0%
AGGGCAGGTGTGTCAACCAT+AGG - chr1_4:13107702-13107721 Msa0151160:intron 55.0%
!! TCTGGTGCTTTGGTGTTGGC+TGG + chr1_4:13107849-13107868 None:intergenic 55.0%
CACCAGAAACCTCTCGAGGA+TGG - chr1_4:13107862-13107881 Msa0151160:intron 55.0%
TACTCTAGCCCATCCTCGAG+AGG + chr1_4:13107874-13107893 None:intergenic 55.0%
CCAACATGACGGTACGGTGG+TGG + chr1_4:13099879-13099898 None:intergenic 60.0%
CCACCACCGTACCGTCATGT+TGG - chr1_4:13099876-13099895 Msa0151160:intron 60.0%
GCCCGGACCAGTTTCTCCAT+GGG - chr1_4:13105470-13105489 Msa0151160:intron 60.0%
GGTGGAGCCTTCTGTCCATG+TGG + chr1_4:13105508-13105527 None:intergenic 60.0%
ACCCTGTGTCCATCACCCAG+AGG + chr1_4:13107595-13107614 None:intergenic 60.0%
GCCCATCCTCGAGAGGTTTC+TGG + chr1_4:13107867-13107886 None:intergenic 60.0%
CTTCGGTGGAGGTCCCTGCT+TGG + chr1_4:13098904-13098923 None:intergenic 65.0%
!! CAGAAGGGAAGACCGGCTCG+TGG + chr1_4:13101957-13101976 None:intergenic 65.0%
GGGCATGCGGTTAACGAGGC+AGG + chr1_4:13102009-13102028 None:intergenic 65.0%
CAGCGCACTAGCGCAGCTTC+AGG - chr1_4:13102721-13102740 Msa0151160:intron 65.0%
TCTGGGCTCTTGCGGCCCTT+TGG + chr1_4:13105152-13105171 None:intergenic 65.0%
AAGGGCCGCAAGAGCCCAGA+AGG - chr1_4:13105152-13105171 Msa0151160:intron 65.0%
GGCCCGGACCAGTTTCTCCA+TGG - chr1_4:13105469-13105488 Msa0151160:intron 65.0%
CTCATTGGTCGGGACCGCCC+AGG - chr1_4:13105239-13105258 Msa0151160:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13096623 13108273 13096623 ID=Msa0151160;Name=Msa0151160
chr1_4 mRNA 13096623 13108273 13096623 ID=Msa0151160-mRNA-1;Parent=Msa0151160;Name=Msa0151160-mRNA-1;_AED=0.20;_eAED=0.20;_QI=439|1|1|1|0.85|0.75|8|338|454
chr1_4 exon 13096623 13097284 13096623 ID=Msa0151160-mRNA-1:exon:5241;Parent=Msa0151160-mRNA-1
chr1_4 exon 13098153 13098257 13098153 ID=Msa0151160-mRNA-1:exon:5240;Parent=Msa0151160-mRNA-1
chr1_4 exon 13099121 13099756 13099121 ID=Msa0151160-mRNA-1:exon:5239;Parent=Msa0151160-mRNA-1
chr1_4 exon 13100214 13100281 13100214 ID=Msa0151160-mRNA-1:exon:5238;Parent=Msa0151160-mRNA-1
chr1_4 exon 13100517 13100631 13100517 ID=Msa0151160-mRNA-1:exon:5237;Parent=Msa0151160-mRNA-1
chr1_4 exon 13101141 13101186 13101141 ID=Msa0151160-mRNA-1:exon:5236;Parent=Msa0151160-mRNA-1
chr1_4 exon 13101619 13101728 13101619 ID=Msa0151160-mRNA-1:exon:5235;Parent=Msa0151160-mRNA-1
chr1_4 exon 13107874 13108273 13107874 ID=Msa0151160-mRNA-1:exon:5234;Parent=Msa0151160-mRNA-1
chr1_4 five_prime_UTR 13107874 13108273 13107874 ID=Msa0151160-mRNA-1:five_prime_utr;Parent=Msa0151160-mRNA-1
chr1_4 five_prime_UTR 13101690 13101728 13101690 ID=Msa0151160-mRNA-1:five_prime_utr;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13101619 13101689 13101619 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13101141 13101186 13101141 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13100517 13100631 13100517 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13100214 13100281 13100214 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13099121 13099756 13099121 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13098153 13098257 13098153 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 CDS 13096961 13097284 13096961 ID=Msa0151160-mRNA-1:cds;Parent=Msa0151160-mRNA-1
chr1_4 three_prime_UTR 13096623 13096960 13096623 ID=Msa0151160-mRNA-1:three_prime_utr;Parent=Msa0151160-mRNA-1
Gene Sequence

>Msa0151160

ATGGCAAAAGTTTGTTGGCCATACTTTGATCCTGAGTACGAGAACTTCAGCAACAGAATCAATCCTCCAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACACTGATCAAGATTGATAGCGTCAATAAACCCGGAATTCTTCTGGAAGTCGTGCAAATCCTGACAGACCTTGACTTCATAATTACCAAAGCTTACATATCTTCTGATGGTAGTTGGTTTATGGATGTATTTCATGTCACGGATCAGCAAGGAAAAAAGATAACAGACAACAAAATTATCGACTTCATTGAAAAGGCTCTAGGACCAAAGGGCCGCAAGAGCCCAGAAGGTGTGAAGAGTTGGGAAGGCAAACGGGTTGGCATTCACTCAATTGGTGATCATACAGCCATTGAGCTCATTGGTCGGGACCGCCCAGGTCTTTTGTCTGAGATATCAGCTGTCCTGGCAAGCTTCCAATTCAATGTGATTGCAGCTGAAGTTTGGACACATAACAGGCGAATAGCATGTGTCCTTTATGTCAATGATGCAACAAACCAAGCTGCGGATGATGATTCAAAAAGATTGTCTCTTATTGACGAGAAGCTCAACCACATCCTTCGTGGTTGTGAGGATGATGAGAATGTGGCCCGGACCAGTTTCTCCATGGGTTTCACCTTCACCCACATGGACAGAAGGCTCCACCAAATGTTGTTTGCTGATAGGGATTATGAGAGTGCTGGTGGAGTAACAACAGCAACAAATGTTGATTCTCCTCCCTCTTTCAGGCCCAATATCGAAATAGAACGTATTGAAGAAAAAGGCTACTCAGTGGTTAGTGTGAGATGCAAAGATCGGGCAAAATTGATGTTTGACATTGTCTGCACTCTTACTGACATGGAATATGTTGTTTTTCATGCCTCCATCTCATCTGAAGGGCCATATGCTTCACAGGAGTACTTCATCAGGCACGTGGATGGATGCACACTTGACACTGAAGGGGAGAAAGAAAGGGTCATCAAATGCATTGAAGCAGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTTGAGCTGTGTGCAAAGGATAGAGTGGGCTTGCTGTCTGAAGTGACTAGGATTCTACGAGAGAACGGCTTAACAGTTTGTAGGGCAGGTGTGTCAACCATAGGAGAGAAAGGACTAAATGTTTTCTATGTGAGAGATGCATATGGAAACCCTGTGGATATGAACATCATTGAAGCACTGCGTAAAGAAATTGGCCAGACTGTGATGGTCAATGTGAAGAAGGTACCAGCCAACACCAAAGCACCAGAAACCTCTCGAGGATGGGCTAGAGTAAGCTTCTTCTTTGGGAACTTGTTGGAAAGGTTCTTGACTTAA
Protein sequence

>Msa0151160

MAKVCWPYFDPEYENFSNRINPPRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGSWFMDVFHVTDQQGKKITDNKIIDFIEKALGPKGRKSPEGVKSWEGKRVGIHSIGDHTAIELIGRDRPGLLSEISAVLASFQFNVIAAEVWTHNRRIACVLYVNDATNQAADDDSKRLSLIDEKLNHILRGCEDDENVARTSFSMGFTFTHMDRRLHQMLFADRDYESAGGVTTATNVDSPPSFRPNIEIERIEEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHASISSEGPYASQEYFIRHVDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGVSTIGEKGLNVFYVRDAYGNPVDMNIIEALRKEIGQTVMVNVKKVPANTKAPETSRGWARVSFFFGNLLERFLT*