Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104820 | sp|O49285|ACR3_ARATH | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104820 | A0A396JL16 | 98.458 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010540 | Msa0104820 | 0.844152 | 9.021528e-59 | -8.615850e-47 |
| Msa0059920 | Msa0104820 | 0.866352 | 3.036727e-65 | -8.615850e-47 |
| Msa0104820 | Msa0151160 | 0.831075 | 2.049671e-55 | -8.615850e-47 |
| Msa0104820 | Msa0191990 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0104820 | Msa0192680 | 0.812518 | 4.071209e-51 | -8.615850e-47 |
| Msa0104820 | Msa0272600 | 0.851655 | 7.705120e-61 | -8.615850e-47 |
| Msa0104820 | Msa0557930 | 0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0104820 | Msa0653290 | 0.827870 | 1.231992e-54 | -8.615850e-47 |
| Msa0104820 | Msa0695720 | 0.809066 | 2.273642e-50 | -8.615850e-47 |
| Msa0104820 | Msa0931750 | 0.801214 | 1.000864e-48 | -8.615850e-47 |
| Msa0104820 | Msa1451520 | 0.811826 | 5.765436e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104820 | MtrunA17_Chr1g0159541 | 98.458 | 454 | 7 | 0 | 1 | 454 | 1 | 454 | 0.0 | 929 |
| Msa0104820 | MtrunA17_Chr3g0125661 | 80.837 | 454 | 79 | 6 | 1 | 453 | 1 | 447 | 0.0 | 743 |
| Msa0104820 | MtrunA17_Chr5g0420221 | 53.636 | 440 | 182 | 7 | 8 | 446 | 16 | 434 | 1.17e-154 | 446 |
| Msa0104820 | MtrunA17_Chr7g0222461 | 51.011 | 445 | 205 | 5 | 9 | 453 | 10 | 441 | 4.82e-152 | 439 |
| Msa0104820 | MtrunA17_Chr7g0224571 | 48.539 | 445 | 218 | 6 | 9 | 452 | 1 | 435 | 2.14e-141 | 412 |
| Msa0104820 | MtrunA17_Chr4g0056741 | 46.370 | 427 | 193 | 7 | 6 | 426 | 3 | 399 | 2.84e-130 | 384 |
| Msa0104820 | MtrunA17_Chr5g0400941 | 46.207 | 435 | 215 | 8 | 10 | 432 | 10 | 437 | 7.06e-128 | 379 |
| Msa0104820 | MtrunA17_Chr5g0398581 | 44.371 | 453 | 223 | 8 | 6 | 453 | 3 | 431 | 5.32e-127 | 375 |
| Msa0104820 | MtrunA17_Chr4g0054261 | 40.559 | 429 | 238 | 4 | 7 | 420 | 26 | 452 | 1.07e-109 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104820 | AT1G76990.4 | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Msa0104820 | AT1G76990.5 | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Msa0104820 | AT1G76990.2 | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Msa0104820 | AT1G76990.3 | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Msa0104820 | AT1G76990.1 | 69.481 | 462 | 122 | 9 | 1 | 453 | 1 | 452 | 0.0 | 652 |
| Msa0104820 | AT1G69040.2 | 52.009 | 448 | 192 | 7 | 9 | 450 | 11 | 441 | 6.13e-150 | 434 |
| Msa0104820 | AT1G69040.1 | 52.009 | 448 | 192 | 7 | 9 | 450 | 7 | 437 | 8.47e-150 | 434 |
| Msa0104820 | AT2G03730.2 | 50.000 | 458 | 205 | 9 | 4 | 451 | 3 | 446 | 1.49e-145 | 423 |
| Msa0104820 | AT2G03730.1 | 50.000 | 458 | 205 | 9 | 4 | 451 | 3 | 446 | 1.49e-145 | 423 |
| Msa0104820 | AT5G25320.1 | 49.206 | 441 | 196 | 7 | 1 | 414 | 1 | 440 | 5.01e-145 | 424 |
| Msa0104820 | AT3G01990.7 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 5.56e-138 | 404 |
| Msa0104820 | AT3G01990.5 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 5.56e-138 | 404 |
| Msa0104820 | AT3G01990.6 | 50.493 | 406 | 186 | 5 | 10 | 415 | 17 | 407 | 9.16e-138 | 403 |
| Msa0104820 | AT3G01990.10 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.05e-137 | 402 |
| Msa0104820 | AT3G01990.1 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.05e-137 | 402 |
| Msa0104820 | AT3G01990.11 | 50.493 | 406 | 186 | 5 | 10 | 415 | 3 | 393 | 1.25e-137 | 402 |
| Msa0104820 | AT5G25320.3 | 48.010 | 402 | 183 | 5 | 38 | 414 | 1 | 401 | 6.97e-126 | 374 |
| Msa0104820 | AT4G22780.1 | 47.160 | 405 | 189 | 4 | 12 | 415 | 9 | 389 | 5.61e-124 | 368 |
| Msa0104820 | AT4G22780.2 | 47.160 | 405 | 189 | 4 | 12 | 415 | 9 | 389 | 5.61e-124 | 368 |
| Msa0104820 | AT1G12420.1 | 45.238 | 420 | 207 | 8 | 8 | 427 | 6 | 402 | 3.36e-119 | 355 |
| Msa0104820 | AT5G65890.1 | 40.685 | 467 | 256 | 6 | 7 | 454 | 8 | 472 | 1.51e-112 | 340 |
| Msa0104820 | AT5G65890.3 | 40.685 | 467 | 256 | 6 | 7 | 454 | 8 | 472 | 1.51e-112 | 340 |
| Msa0104820 | AT5G25320.2 | 46.791 | 374 | 171 | 7 | 1 | 347 | 1 | 373 | 1.48e-111 | 334 |
| Msa0104820 | AT3G01990.9 | 48.980 | 343 | 160 | 5 | 10 | 352 | 3 | 330 | 4.48e-109 | 326 |
| Msa0104820 | AT3G01990.4 | 48.980 | 343 | 160 | 5 | 10 | 352 | 17 | 344 | 4.56e-109 | 327 |
| Msa0104820 | AT3G01990.2 | 49.408 | 338 | 156 | 5 | 10 | 347 | 17 | 339 | 7.24e-109 | 326 |
| Msa0104820 | AT5G65890.4 | 38.389 | 422 | 239 | 6 | 52 | 454 | 1 | 420 | 5.79e-91 | 283 |
| Msa0104820 | AT5G65890.2 | 38.389 | 422 | 239 | 6 | 52 | 454 | 1 | 420 | 5.79e-91 | 283 |
| Msa0104820 | AT1G12420.2 | 42.898 | 352 | 179 | 7 | 76 | 427 | 1 | 330 | 1.59e-90 | 280 |
| Msa0104820 | AT3G01990.3 | 47.003 | 317 | 153 | 5 | 10 | 326 | 17 | 318 | 1.61e-89 | 275 |
| Msa0104820 | AT3G01990.8 | 47.003 | 317 | 153 | 5 | 10 | 326 | 3 | 304 | 1.67e-89 | 275 |
| Msa0104820 | AT5G65890.5 | 36.494 | 348 | 202 | 5 | 124 | 454 | 13 | 358 | 1.02e-66 | 218 |
Find 174 sgRNAs with CRISPR-Local
Find 615 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAACTCTTCACACCTTC+TGG | 0.132030 | 1_3:-12995669 | None:intergenic |
| TTGATTCTCCTCCCTCTTTC+AGG | 0.151257 | 1_3:+12996090 | Msa0104820:CDS |
| TGAATCTTGGTCCAATTTAA+TGG | 0.187172 | 1_3:-12988767 | None:intergenic |
| TTCTGATGGTAGTTGGTTTA+TGG | 0.190044 | 1_3:+12994890 | Msa0104820:CDS |
| AATACGCTCTATTTCAATAT+TGG | 0.195002 | 1_3:-12996114 | None:intergenic |
| GCCCATCCTCGAGACGTTTC+TGG | 0.220608 | 1_3:-12998405 | None:intergenic |
| GACAATATCTTCCATTAAAT+TGG | 0.239583 | 1_3:+12988756 | Msa0104820:five_prime_UTR |
| CACGACTTCCAGCAGAATTC+CGG | 0.249259 | 1_3:-12994820 | None:intergenic |
| AACATTTGGGTTGGGGCATT+TGG | 0.261897 | 1_3:-12988831 | None:intergenic |
| AGGTTCTTGACTTAATTAAA+AGG | 0.270566 | 1_3:+12998462 | Msa0104820:exon |
| ATGACAAACAATAGAACATT+TGG | 0.294565 | 1_3:-12988845 | None:intergenic |
| CCCAACTCTTCACACCTTCT+GGG | 0.315377 | 1_3:-12995668 | None:intergenic |
| GAAGCACTGCGTAAAGAAAT+TGG | 0.317035 | 1_3:+12998333 | Msa0104820:CDS |
| GCTAGAGTAAGCTTCTTCTT+TGG | 0.317293 | 1_3:+12998426 | Msa0104820:CDS |
| TCTTCACATCCTCCAAAGTT+TGG | 0.319139 | 1_3:-12988965 | None:intergenic |
| ATACGCTCTATTTCAATATT+GGG | 0.319901 | 1_3:-12996113 | None:intergenic |
| CTAGAGTAAGCTTCTTCTTT+GGG | 0.326628 | 1_3:+12998427 | Msa0104820:CDS |
| CCAAATGTTGTTTGCTGATA+GGG | 0.330716 | 1_3:+12996028 | Msa0104820:CDS |
| TCTAATTCGCAGGGTCTCTA+TGG | 0.333159 | 1_3:+12994230 | Msa0104820:intron |
| TTGTTGCATCATTGACATAA+AGG | 0.334530 | 1_3:-12995857 | None:intergenic |
| ACCAAATGTTGTTTGCTGAT+AGG | 0.341425 | 1_3:+12996027 | Msa0104820:CDS |
| TCATGTACCTATTCTGATTC+CGG | 0.352861 | 1_3:+12998493 | Msa0104820:three_prime_UTR |
| CCCTATCAGCAAACAACATT+TGG | 0.356933 | 1_3:-12996028 | None:intergenic |
| TTCAATATTGGGCCTGAAAG+AGG | 0.366015 | 1_3:-12996102 | None:intergenic |
| TGTGAAGAATTAAGAGTCTT+GGG | 0.377971 | 1_3:+12988980 | Msa0104820:five_prime_UTR |
| TGAATAAAGCTCTTGAATCT+TGG | 0.378320 | 1_3:-12988780 | None:intergenic |
| TGAGATGGACATGTTATGAT+AGG | 0.378598 | 1_3:-12998659 | None:intergenic |
| ATTTAGTCCTTTCTCTCCTA+TGG | 0.378855 | 1_3:-12998259 | None:intergenic |
| CTTCTTCTTTGGGAACTTGT+TGG | 0.378986 | 1_3:+12998437 | Msa0104820:CDS |
| ATAGAGCGTATTGAGGAAAA+AGG | 0.379809 | 1_3:+12996125 | Msa0104820:CDS |
| GGTGAAACCCATGGAGAAAC+TGG | 0.381534 | 1_3:-12995979 | None:intergenic |
| TCTGGGCTCTTGCCGCCCTT+TGG | 0.381973 | 1_3:-12995651 | None:intergenic |
| TCGAGACGTTTCTGGTGCTT+TGG | 0.390958 | 1_3:-12998397 | None:intergenic |
| CAGCTGCAATCACATTGAAT+TGG | 0.392381 | 1_3:-12995800 | None:intergenic |
| ACGACTTCCAGCAGAATTCC+GGG | 0.392506 | 1_3:-12994819 | None:intergenic |
| AACATCTTACAAGCATTGTT+TGG | 0.393303 | 1_3:-12998619 | None:intergenic |
| AACAATAGAACATTTGGGTT+GGG | 0.394214 | 1_3:-12988839 | None:intergenic |
| GGGTTTCACCTTCACCCATA+TGG | 0.396055 | 1_3:+12995992 | Msa0104820:CDS |
| GGTGGAGCCTTCTGTCCATA+TGG | 0.397742 | 1_3:-12996007 | None:intergenic |
| CTGAAGTTTGGACTCATAAC+AGG | 0.401956 | 1_3:+12995820 | Msa0104820:CDS |
| CGTTTCTGGTGCTTTGGTGT+TGG | 0.410409 | 1_3:-12998391 | None:intergenic |
| TATAATCCTTAGCCAAACTT+TGG | 0.412502 | 1_3:+12988953 | Msa0104820:five_prime_UTR |
| ACATATCTTCTGATGGTAGT+TGG | 0.412715 | 1_3:+12994883 | Msa0104820:CDS |
| ATGTGATTGCAGCTGAAGTT+TGG | 0.418119 | 1_3:+12995808 | Msa0104820:CDS |
| ATAAATTATTATGCACTACT+TGG | 0.419389 | 1_3:+12988668 | Msa0104820:five_prime_UTR |
| ATTGTTTGGTTTAAAACAAA+AGG | 0.420375 | 1_3:-12998605 | None:intergenic |
| ATCAGAAGATATGTAAGCTT+TGG | 0.421120 | 1_3:-12994874 | None:intergenic |
| GCCCAGAAGGTGTGAAGAGT+TGG | 0.421778 | 1_3:+12995667 | Msa0104820:CDS |
| TGGGTTGGGGCATTTGGCAA+TGG | 0.425220 | 1_3:-12988825 | None:intergenic |
| AGAACAGCTTAACAGTTTGT+AGG | 0.425881 | 1_3:+12998223 | Msa0104820:CDS |
| CATTGAATTGGAAGCTCGCC+AGG | 0.426882 | 1_3:-12995788 | None:intergenic |
| AATACGTGGAAGTTTATCAT+TGG | 0.443181 | 1_3:+12988691 | Msa0104820:five_prime_UTR |
| TGACAAACAATAGAACATTT+GGG | 0.445347 | 1_3:-12988844 | None:intergenic |
| TCATACTCAGGATCAAAGTA+TGG | 0.448114 | 1_3:-12993757 | None:intergenic |
| GCTTGGACAGTGCTTGAACT+TGG | 0.449177 | 1_3:+12998581 | Msa0104820:three_prime_UTR |
| TCTGGTGCTTTGGTGTTGGC+TGG | 0.449272 | 1_3:-12998387 | None:intergenic |
| CAATAAACCCGGAATTCTGC+TGG | 0.451982 | 1_3:+12994812 | Msa0104820:CDS |
| ATGTGAAGAATTAAGAGTCT+TGG | 0.452701 | 1_3:+12988979 | Msa0104820:five_prime_UTR |
| AATTATTGACTTCATTGAAA+AGG | 0.455728 | 1_3:+12995196 | Msa0104820:CDS |
| CATACAGCCATTGAGCTCAT+TGG | 0.456613 | 1_3:+12995726 | Msa0104820:CDS |
| AGCTTAACAGTTTGTAGGGC+AGG | 0.456982 | 1_3:+12998228 | Msa0104820:CDS |
| CCCAGAAGGTGTGAAGAGTT+GGG | 0.459787 | 1_3:+12995668 | Msa0104820:CDS |
| TCTTTGGGAACTTGTTGGAA+AGG | 0.462241 | 1_3:+12998442 | Msa0104820:CDS |
| CATGCCTCCATCTCATCTGA+AGG | 0.466025 | 1_3:+12996239 | Msa0104820:CDS |
| TGAAGAGTTGGGAAGGCAAA+CGG | 0.470682 | 1_3:+12995679 | Msa0104820:CDS |
| GTCCAGGACCAGTTTCTCCA+TGG | 0.473521 | 1_3:+12995971 | Msa0104820:CDS |
| CAAGCAACCGGAATCAGAAT+AGG | 0.474583 | 1_3:-12998500 | None:intergenic |
| TCCAGGACCAGTTTCTCCAT+GGG | 0.475456 | 1_3:+12995972 | Msa0104820:CDS |
| GGTTCTTGACTTAATTAAAA+GGG | 0.477530 | 1_3:+12998463 | Msa0104820:exon |
| ACACTGAAGGGGAGAAAGAA+AGG | 0.477680 | 1_3:+12997180 | Msa0104820:CDS |
| AATCCTTAGCCAAACTTTGG+AGG | 0.479682 | 1_3:+12988956 | Msa0104820:five_prime_UTR |
| TCAATGATGTTCATATCCAC+AGG | 0.481133 | 1_3:-12998312 | None:intergenic |
| GTTGAATGGCAAAAGTTTGT+TGG | 0.483753 | 1_3:+12993734 | Msa0104820:exon |
| ATTTACAAATCACAAGCAAC+CGG | 0.486219 | 1_3:-12998512 | None:intergenic |
| TTATGAAGTCAAGGTCTGTC+AGG | 0.488033 | 1_3:-12994848 | None:intergenic |
| CGGGTTGGCATTCACTCCAT+TGG | 0.490248 | 1_3:+12995699 | Msa0104820:CDS |
| ACCCATGGAGAAACTGGTCC+TGG | 0.492418 | 1_3:-12995973 | None:intergenic |
| TTGCTGAAGTTCTCATACTC+AGG | 0.492722 | 1_3:-12993769 | None:intergenic |
| GTCTGAGATATCAGCTGTCC+TGG | 0.493937 | 1_3:+12995770 | Msa0104820:CDS |
| GTGGAGCCTTCTGTCCATAT+GGG | 0.494278 | 1_3:-12996006 | None:intergenic |
| ACATGTTATGATAGGGAAGA+TGG | 0.494611 | 1_3:-12998651 | None:intergenic |
| CATCCTCCAAAGTTTGGCTA+AGG | 0.495482 | 1_3:-12988959 | None:intergenic |
| GAACAGCTTAACAGTTTGTA+GGG | 0.496514 | 1_3:+12998224 | Msa0104820:CDS |
| GTGGAAGTTTATCATTGGCT+TGG | 0.498115 | 1_3:+12988696 | Msa0104820:five_prime_UTR |
| AAGCTCAACCACATCCTTCG+TGG | 0.501497 | 1_3:+12995927 | Msa0104820:CDS |
| TCACATTGACCATCACAGTC+TGG | 0.502894 | 1_3:-12998356 | None:intergenic |
| GACATTTGAAGTATATATGC+AGG | 0.503272 | 1_3:+12998755 | Msa0104820:three_prime_UTR |
| GAAGAGTTGGGAAGGCAAAC+GGG | 0.503318 | 1_3:+12995680 | Msa0104820:CDS |
| TTGAATCATCATCCACAGCT+TGG | 0.506824 | 1_3:-12995881 | None:intergenic |
| ATTCTTAGGAGTACTTCATC+AGG | 0.510626 | 1_3:+12997135 | Msa0104820:intron |
| TGAACATTTAAATAGGCTCT+AGG | 0.512518 | 1_3:+12995627 | Msa0104820:intron |
| CCATGATTGTACACTGATCA+AGG | 0.512717 | 1_3:+12994266 | Msa0104820:CDS |
| CACCAGAAACGTCTCGAGGA+TGG | 0.514881 | 1_3:+12998403 | Msa0104820:CDS |
| GACGAGAGAAGGTGGTTGAA+TGG | 0.517921 | 1_3:+12993720 | Msa0104820:exon |
| AGCCATTGAGCTCATTGGTC+GGG | 0.518001 | 1_3:+12995731 | Msa0104820:CDS |
| ACCAGAAACGTCTCGAGGAT+GGG | 0.518691 | 1_3:+12998404 | Msa0104820:CDS |
| ATGCATACCTGTGAAGCATA+AGG | 0.520785 | 1_3:-12996263 | None:intergenic |
| TGAAGGGCCTTATGCTTCAC+AGG | 0.521336 | 1_3:+12996256 | Msa0104820:CDS |
| CCTTGATCAGTGTACAATCA+TGG | 0.522276 | 1_3:-12994266 | None:intergenic |
| CTCATTGGTCGGGACCGCCC+AGG | 0.524150 | 1_3:+12995741 | Msa0104820:CDS |
| TCAATATTGGGCCTGAAAGA+GGG | 0.529751 | 1_3:-12996101 | None:intergenic |
| TATCAGCAAACAACATTTGG+TGG | 0.529977 | 1_3:-12996025 | None:intergenic |
| AAACAATAGAACATTTGGGT+TGG | 0.530854 | 1_3:-12988840 | None:intergenic |
| ACAATAGAACATTTGGGTTG+GGG | 0.535225 | 1_3:-12988838 | None:intergenic |
| TTCTATGTGAGAGATGCATA+TGG | 0.536976 | 1_3:+12998285 | Msa0104820:CDS |
| TAGTGTGAGATGCAAAGATC+GGG | 0.541924 | 1_3:+12996160 | Msa0104820:CDS |
| TATCCTTTGCGCACAGCTCA+AGG | 0.542089 | 1_3:-12998161 | None:intergenic |
| GATGGTAGTTGGTTTATGGA+TGG | 0.543454 | 1_3:+12994894 | Msa0104820:CDS |
| GATATCTCAGACAAAAGACC+TGG | 0.545024 | 1_3:-12995759 | None:intergenic |
| TACTTCATCAGGCACGTGGA+TGG | 0.545747 | 1_3:+12997146 | Msa0104820:CDS |
| GTGTCAACCATAGGAGAGAA+AGG | 0.546097 | 1_3:+12998252 | Msa0104820:CDS |
| AGCAATTTATTGACGAGAGA+AGG | 0.548549 | 1_3:+12993709 | Msa0104820:five_prime_UTR |
| CCTCACATCCACGAAGGATG+TGG | 0.549263 | 1_3:-12995935 | None:intergenic |
| GTCCCGACCAATGAGCTCAA+TGG | 0.551521 | 1_3:-12995733 | None:intergenic |
| GAGTGTGTTGTATTTATACA+AGG | 0.552575 | 1_3:+12998727 | Msa0104820:three_prime_UTR |
| AAGTTAACAGGGAACCTTGG+AGG | 0.558483 | 1_3:-12993802 | None:intergenic |
| GGATGCACACTTGACACTGA+AGG | 0.564728 | 1_3:+12997167 | Msa0104820:CDS |
| ATGCCTCCATCTCATCTGAA+GGG | 0.564762 | 1_3:+12996240 | Msa0104820:CDS |
| AAGGGCGGCAAGAGCCCAGA+AGG | 0.565172 | 1_3:+12995654 | Msa0104820:CDS |
| GCTTGCTGTCTGAAGTGACT+AGG | 0.566444 | 1_3:+12998190 | Msa0104820:CDS |
| AAATAGGCTCTAGGACCAAA+GGG | 0.571475 | 1_3:+12995636 | Msa0104820:intron |
| TCGAATAAGATTACTTTCGG+TGG | 0.571609 | 1_3:+12988623 | None:intergenic |
| TAAATAGGCTCTAGGACCAA+AGG | 0.572043 | 1_3:+12995635 | Msa0104820:intron |
| AGAATTAAGAGTCTTGGGGT+TGG | 0.573664 | 1_3:+12988985 | Msa0104820:five_prime_UTR |
| GAGATGGACATGTTATGATA+GGG | 0.574314 | 1_3:-12998658 | None:intergenic |
| CTTTGGTAATTATGAAGTCA+AGG | 0.574350 | 1_3:-12994857 | None:intergenic |
| ATTAAGTAAGATACATGAGA+TGG | 0.580895 | 1_3:-12998674 | None:intergenic |
| GATGCACACTTGACACTGAA+GGG | 0.583904 | 1_3:+12997168 | Msa0104820:CDS |
| GTGAAGAATTAAGAGTCTTG+GGG | 0.584942 | 1_3:+12988981 | Msa0104820:five_prime_UTR |
| AATGGCTGTATGATCACCAA+TGG | 0.585858 | 1_3:-12995715 | None:intergenic |
| AAGTTGTTGTGTGTCAAGCT+TGG | 0.586053 | 1_3:+12998564 | Msa0104820:three_prime_UTR |
| TTAGTGTGAGATGCAAAGAT+CGG | 0.586475 | 1_3:+12996159 | Msa0104820:CDS |
| AGGGCAGGTGTGTCAACCAT+AGG | 0.587010 | 1_3:+12998243 | Msa0104820:CDS |
| TATTGAAATAGAGCGTATTG+AGG | 0.589158 | 1_3:+12996118 | Msa0104820:CDS |
| CCACATCCTTCGTGGATGTG+AGG | 0.591932 | 1_3:+12995935 | Msa0104820:CDS |
| AAAGCTTACATATCTTCTGA+TGG | 0.594595 | 1_3:+12994876 | Msa0104820:CDS |
| CCTTCTGTCCATATGGGTGA+AGG | 0.594675 | 1_3:-12996000 | None:intergenic |
| CAGCCATTGAGCTCATTGGT+CGG | 0.596989 | 1_3:+12995730 | Msa0104820:CDS |
| AGTTGGGAAGGCAAACGGGT+TGG | 0.597769 | 1_3:+12995684 | Msa0104820:CDS |
| CCTTCACCCATATGGACAGA+AGG | 0.598971 | 1_3:+12996000 | Msa0104820:CDS |
| TTCTATTATGCTATCCACGT+TGG | 0.599235 | 1_3:-12988869 | None:intergenic |
| CTGTGCGCAAAGGATAGAGT+GGG | 0.600715 | 1_3:+12998168 | Msa0104820:CDS |
| CAATGATGTTCATATCCACA+GGG | 0.601090 | 1_3:-12998311 | None:intergenic |
| GAAGGTGTGAAGAGTTGGGA+AGG | 0.603934 | 1_3:+12995672 | Msa0104820:CDS |
| ATAAGGCCCTTCAGATGAGA+TGG | 0.605356 | 1_3:-12996246 | None:intergenic |
| GATAGGGATTATGAGAGTGC+TGG | 0.606196 | 1_3:+12996044 | Msa0104820:CDS |
| CACTGAAGGGGAGAAAGAAA+GGG | 0.607213 | 1_3:+12997181 | Msa0104820:CDS |
| ATGAACAGTATTTCATGTCA+CGG | 0.611220 | 1_3:+12995142 | Msa0104820:intron |
| TGTGATGGTCAATGTGAAGA+AGG | 0.612803 | 1_3:+12998362 | Msa0104820:CDS |
| AGAAATTGGCCAGACTGTGA+TGG | 0.614374 | 1_3:+12998347 | Msa0104820:CDS |
| AGGGATTATGAGAGTGCTGG+TGG | 0.616212 | 1_3:+12996047 | Msa0104820:CDS |
| TGTCTGCACTCTTACTGACA+TGG | 0.618144 | 1_3:+12996202 | Msa0104820:CDS |
| AATTTATTGACGAGAGAAGG+TGG | 0.618355 | 1_3:+12993712 | Msa0104820:five_prime_UTR |
| ATGGGTGAAGGTGAAACCCA+TGG | 0.621489 | 1_3:-12995988 | None:intergenic |
| GCTGTGCGCAAAGGATAGAG+TGG | 0.635425 | 1_3:+12998167 | Msa0104820:CDS |
| TATTCAAAGAAGAGTAAGCG+AGG | 0.636120 | 1_3:+12997226 | Msa0104820:CDS |
| AGGATGATGAGAATGTGTCC+AGG | 0.638867 | 1_3:+12995955 | Msa0104820:CDS |
| GCAACAGAATCAATCCTCCA+AGG | 0.646007 | 1_3:+12993788 | Msa0104820:CDS |
| TATGCACTACTTGGAATACG+TGG | 0.652766 | 1_3:+12988677 | Msa0104820:five_prime_UTR |
| TGATGCAACAAACCAAGCTG+TGG | 0.654815 | 1_3:+12995869 | Msa0104820:CDS |
| AGGCCCTTCAGATGAGATGG+AGG | 0.656278 | 1_3:-12996243 | None:intergenic |
| GGAGTACTTCATCAGGCACG+TGG | 0.663877 | 1_3:+12997142 | Msa0104820:intron |
| GAGCCTTGAGCTGTGCGCAA+AGG | 0.664760 | 1_3:+12998158 | Msa0104820:CDS |
| ATGCACACTTGACACTGAAG+GGG | 0.665219 | 1_3:+12997169 | Msa0104820:CDS |
| ATTGATAGCGTCAATAAACC+CGG | 0.669304 | 1_3:+12994801 | Msa0104820:CDS |
| TTTCATGTCACGGATCAGCA+AGG | 0.670024 | 1_3:+12995152 | Msa0104820:CDS |
| ATATCTCAGACAAAAGACCT+GGG | 0.673607 | 1_3:-12995758 | None:intergenic |
| TATTGTTTGTCATTCCAACG+TGG | 0.693250 | 1_3:+12988855 | Msa0104820:five_prime_UTR |
| CATCATCCTCACATCCACGA+AGG | 0.702439 | 1_3:-12995941 | None:intergenic |
| ATATTGGGCCTGAAAGAGGG+AGG | 0.704198 | 1_3:-12996098 | None:intergenic |
| AAAGCACCAGAAACGTCTCG+AGG | 0.732207 | 1_3:+12998399 | Msa0104820:CDS |
| TAGGCTCTAGGACCAAAGGG+CGG | 0.748950 | 1_3:+12995639 | Msa0104820:intron |
| AGATGCATATGGAAACCCTG+TGG | 0.774336 | 1_3:+12998296 | Msa0104820:CDS |
| TCTCAGACAAAAGACCTGGG+CGG | 0.775644 | 1_3:-12995755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATTCAAATTATTTATA+TGG | + | chr1_3:12989133-12989152 | Msa0104820:intron | 10.0% |
| !! | AAATAAAAATATATTACAGT+TGG | - | chr1_3:12989838-12989857 | None:intergenic | 10.0% |
| !!! | TGAATAAAAATTGTTTTTTT+AGG | - | chr1_3:12989871-12989890 | None:intergenic | 10.0% |
| !!! | TTTTATTCATAAACTAATTT+CGG | + | chr1_3:12990771-12990790 | Msa0104820:intron | 10.0% |
| !! | TTATATTATATTTGAATATC+TGG | + | chr1_3:12991745-12991764 | Msa0104820:intron | 10.0% |
| !!! | AGAATTAATTAATTATTTTG+AGG | - | chr1_3:12994299-12994318 | None:intergenic | 10.0% |
| !!! | TTTACAGTAATATTTTAAAT+CGG | + | chr1_3:12996357-12996376 | Msa0104820:intron | 10.0% |
| !! | AATGAATAAAAAAATTGATA+AGG | - | chr1_3:12997779-12997798 | None:intergenic | 10.0% |
| !! | ATTATGATTGTTGAATTTAA+TGG | + | chr1_3:12989067-12989086 | Msa0104820:intron | 15.0% |
| !! | TATGATATAAATTAATGAGT+TGG | - | chr1_3:12990282-12990301 | None:intergenic | 15.0% |
| !! | TAAGTACAATTTAAATTGAA+GGG | - | chr1_3:12990676-12990695 | None:intergenic | 15.0% |
| !!! | TTATAAATTCTTAAAGTGTT+TGG | + | chr1_3:12992683-12992702 | Msa0104820:intron | 15.0% |
| !! | TGATTTGATAAAATATATCT+TGG | - | chr1_3:12993512-12993531 | None:intergenic | 15.0% |
| !!! | TTAAACTCTAAAAAAATTGA+CGG | + | chr1_3:12993873-12993892 | Msa0104820:intron | 15.0% |
| !!! | ATTAATTCTAACATTTTTCA+TGG | + | chr1_3:12994310-12994329 | Msa0104820:intron | 15.0% |
| !!! | TTTTTTTTTCTTTCTGTTTT+TGG | - | chr1_3:12994421-12994440 | None:intergenic | 15.0% |
| !!! | TTTTTTATTCCTAGTAAATT+AGG | + | chr1_3:12994663-12994682 | Msa0104820:intron | 15.0% |
| !! | TTGTTTGCTTAATTAAAATA+TGG | + | chr1_3:12994991-12995010 | Msa0104820:intron | 15.0% |
| !!! | TTGTTTTCAAATTTTTGTAT+AGG | - | chr1_3:12996568-12996587 | None:intergenic | 15.0% |
| !! | AAATTAATTGACAAAATTTG+AGG | + | chr1_3:12997066-12997085 | Msa0104820:intron | 15.0% |
| !!! | ATAATTTTATTAGTTTTCGA+CGG | + | chr1_3:12997827-12997846 | Msa0104820:intron | 15.0% |
| !! | ATAAATTATTATGCACTACT+TGG | + | chr1_3:12988668-12988687 | Msa0104820:five_prime_UTR | 20.0% |
| !!! | TCTACTCATTTTTATTTGAA+AGG | + | chr1_3:12989164-12989183 | Msa0104820:intron | 20.0% |
| !!! | TTTGAACAATTTTTCAAAGA+GGG | - | chr1_3:12989393-12989412 | None:intergenic | 20.0% |
| !!! | TTTTGAACAATTTTTCAAAG+AGG | - | chr1_3:12989394-12989413 | None:intergenic | 20.0% |
| !! | GTGGATAAAAAAAATGTAAT+TGG | + | chr1_3:12989510-12989529 | Msa0104820:intron | 20.0% |
| !! | ATGAAAGATTCTATTACATA+TGG | + | chr1_3:12989534-12989553 | Msa0104820:intron | 20.0% |
| !!! | ATTTCACTAATTTAGTTCAT+AGG | - | chr1_3:12989804-12989823 | None:intergenic | 20.0% |
| !! | AAAAATATATTACAGTTGGT+TGG | - | chr1_3:12989834-12989853 | None:intergenic | 20.0% |
| !!! | TCCACAAAAAATGATATTTT+TGG | + | chr1_3:12990075-12990094 | Msa0104820:intron | 20.0% |
| !!! | CCACAAAAAATGATATTTTT+GGG | + | chr1_3:12990076-12990095 | Msa0104820:intron | 20.0% |
| !!! | AATTTCTTTGATAGTTTTTC+CGG | + | chr1_3:12990347-12990366 | Msa0104820:intron | 20.0% |
| !! | TAAAATAAGCGTAGAATATA+TGG | - | chr1_3:12990574-12990593 | None:intergenic | 20.0% |
| !! | ATTGTATGAAACAAAATGTA+TGG | - | chr1_3:12990620-12990639 | None:intergenic | 20.0% |
| !! | GTAAGTACAATTTAAATTGA+AGG | - | chr1_3:12990677-12990696 | None:intergenic | 20.0% |
| !!! | TGTTTGTTATTCAATTTAGA+TGG | - | chr1_3:12990736-12990755 | None:intergenic | 20.0% |
| !!! | ATTCGTTTATCCTTTTTTAT+CGG | - | chr1_3:12990996-12991015 | None:intergenic | 20.0% |
| !!! | GTTTTAAAAATGTGAAACTT+TGG | - | chr1_3:12992011-12992030 | None:intergenic | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr1_3:12992074-12992093 | None:intergenic | 20.0% |
| !! | CATTCAATTAATGATGTATA+TGG | + | chr1_3:12992085-12992104 | Msa0104820:intron | 20.0% |
| !!! | CACTTTAAGAATTTATAATC+AGG | - | chr1_3:12992681-12992700 | None:intergenic | 20.0% |
| !!! | ATTCTAAAATAGTTACAAGT+CGG | + | chr1_3:12992730-12992749 | Msa0104820:intron | 20.0% |
| !!! | TCAAAAAAATGTGTTTTCAT+AGG | + | chr1_3:12992768-12992787 | Msa0104820:intron | 20.0% |
| !! | AGATTAGAATAAGAAAGTAA+TGG | + | chr1_3:12993634-12993653 | Msa0104820:intron | 20.0% |
| !!! | ACTTTTTTGCTTTTGATTAA+GGG | + | chr1_3:12993679-12993698 | Msa0104820:intron | 20.0% |
| !!! | TTAAATATTTTGCAGATCAT+TGG | - | chr1_3:12993857-12993876 | None:intergenic | 20.0% |
| !!! | GTTATTTTTTTGTCAAAACA+AGG | - | chr1_3:12994074-12994093 | None:intergenic | 20.0% |
| !! | AAGTTAAATTCAATGATGTT+AGG | - | chr1_3:12994471-12994490 | None:intergenic | 20.0% |
| !!! | CATCATTGAATTTAACTTAT+TGG | + | chr1_3:12994473-12994492 | Msa0104820:intron | 20.0% |
| !! | ATGAAATAAACTAATGATGA+TGG | - | chr1_3:12994714-12994733 | None:intergenic | 20.0% |
| !!! | ATTAGTTTATTTCATTTCCA+TGG | + | chr1_3:12994719-12994738 | Msa0104820:intron | 20.0% |
| !!! | AATTATTGACTTCATTGAAA+AGG | + | chr1_3:12995196-12995215 | Msa0104820:CDS | 20.0% |
| !! | GTTAAATTAAAAGCAAACAA+AGG | - | chr1_3:12996698-12996717 | None:intergenic | 20.0% |
| !! | AACCATTACTAAAAAAGATA+AGG | + | chr1_3:12997287-12997306 | Msa0104820:intron | 20.0% |
| !!! | ATCCTTATCTTTTTTAGTAA+TGG | - | chr1_3:12997292-12997311 | None:intergenic | 20.0% |
| !! | AGGTTCAAAATGTATTAATT+TGG | - | chr1_3:12997502-12997521 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTCATATTTTG+AGG | - | chr1_3:12997705-12997724 | None:intergenic | 20.0% |
| !!! | TAGACAATCATGATTTTATA+AGG | - | chr1_3:12997748-12997767 | None:intergenic | 20.0% |
| !!! | TAATTTTATTAGTTTTCGAC+GGG | + | chr1_3:12997828-12997847 | Msa0104820:intron | 20.0% |
| !!! | ATAGATGGTAAAAGTTTTAT+AGG | + | chr1_3:12997884-12997903 | Msa0104820:intron | 20.0% |
| !! | TAGGGACTATAATTAATTAA+TGG | + | chr1_3:12997932-12997951 | Msa0104820:intron | 20.0% |
| !!! | ATTGTTTGGTTTAAAACAAA+AGG | - | chr1_3:12998608-12998627 | None:intergenic | 20.0% |
| ! | GACAATATCTTCCATTAAAT+TGG | + | chr1_3:12988756-12988775 | Msa0104820:five_prime_UTR | 25.0% |
| ! | TGACAAACAATAGAACATTT+GGG | - | chr1_3:12988847-12988866 | None:intergenic | 25.0% |
| ! | ATGACAAACAATAGAACATT+TGG | - | chr1_3:12988848-12988867 | None:intergenic | 25.0% |
| ! | GAAATTACATTGAAGAAGTT+AGG | - | chr1_3:12989245-12989264 | None:intergenic | 25.0% |
| ! | TGTTCTTTGGCATAAATTTA+TGG | - | chr1_3:12989280-12989299 | None:intergenic | 25.0% |
| !! | CATATAGTTACTTTGTTCTT+TGG | - | chr1_3:12989293-12989312 | None:intergenic | 25.0% |
| ! | AAAAACTATATGATGCATTG+AGG | + | chr1_3:12989336-12989355 | Msa0104820:intron | 25.0% |
| !!! | CCCAAAAATATCATTTTTTG+TGG | - | chr1_3:12990079-12990098 | None:intergenic | 25.0% |
| !!! | ATTTCTTTGATAGTTTTTCC+GGG | + | chr1_3:12990348-12990367 | Msa0104820:intron | 25.0% |
| ! | TATGAAACAAAATGTATGGA+TGG | - | chr1_3:12990616-12990635 | None:intergenic | 25.0% |
| ! | TTTGTTTCATACAATATCGA+TGG | + | chr1_3:12990625-12990644 | Msa0104820:intron | 25.0% |
| !! | TACAATATCGATGGATTTAT+TGG | + | chr1_3:12990634-12990653 | Msa0104820:intron | 25.0% |
| ! | AATTGAAGGGAAATTTGTAT+CGG | - | chr1_3:12990663-12990682 | None:intergenic | 25.0% |
| !! | ACAAATACTTTAGAAAGGAA+TGG | + | chr1_3:12990795-12990814 | Msa0104820:intron | 25.0% |
| !! | CAAATACTTTAGAAAGGAAT+GGG | + | chr1_3:12990796-12990815 | Msa0104820:intron | 25.0% |
| !! | AAATACTTTAGAAAGGAATG+GGG | + | chr1_3:12990797-12990816 | Msa0104820:intron | 25.0% |
| ! | CCATATAACCAAAAAAATTG+AGG | - | chr1_3:12990948-12990967 | None:intergenic | 25.0% |
| !!! | CCTCAATTTTTTTGGTTATA+TGG | + | chr1_3:12990945-12990964 | Msa0104820:intron | 25.0% |
| ! | TTTATCGGATAAAATGTGTT+TGG | - | chr1_3:12990981-12991000 | None:intergenic | 25.0% |
| !! | CACATTTTATCCGATAAAAA+AGG | + | chr1_3:12990983-12991002 | Msa0104820:intron | 25.0% |
| !! | CTAACATTGTAATTGTTGTT+TGG | - | chr1_3:12991075-12991094 | None:intergenic | 25.0% |
| !! | TTCTACAGAATGTGAAATTT+TGG | - | chr1_3:12991650-12991669 | None:intergenic | 25.0% |
| ! | TTTGCAATCACAAAAGTTAA+CGG | - | chr1_3:12991848-12991867 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr1_3:12992159-12992178 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr1_3:12992159-12992178 | Msa0104820:intron | 25.0% |
| !!! | ACATTTGATTTCCGTTTTAA+GGG | - | chr1_3:12992323-12992342 | None:intergenic | 25.0% |
| ! | AAGACTATTAGACATATGAA+GGG | + | chr1_3:12992401-12992420 | Msa0104820:intron | 25.0% |
| ! | AATGGAATAAGGTTTCATAT+AGG | - | chr1_3:12993468-12993487 | None:intergenic | 25.0% |
| !! | ACAAATTGTTTCCTTTTCTA+TGG | + | chr1_3:12993534-12993553 | Msa0104820:intron | 25.0% |
| !!! | GACTTTTTTGCTTTTGATTA+AGG | + | chr1_3:12993678-12993697 | Msa0104820:intron | 25.0% |
| !! | AAACAAGCATTGTATTTCAA+GGG | - | chr1_3:12993828-12993847 | None:intergenic | 25.0% |
| !! | AAAACAAGCATTGTATTTCA+AGG | - | chr1_3:12993829-12993848 | None:intergenic | 25.0% |
| !! | AGTAACAGTATGATGATTTT+TGG | + | chr1_3:12993912-12993931 | Msa0104820:intron | 25.0% |
| !! | TTTCTGAAAAAGTTGATCAT+AGG | - | chr1_3:12994532-12994551 | None:intergenic | 25.0% |
| !!! | TAAGTTGATGTAATATCGAA+TGG | + | chr1_3:12994756-12994775 | Msa0104820:intron | 25.0% |
| ! | TTTGTTGCATATGCAAATAT+TGG | + | chr1_3:12995020-12995039 | Msa0104820:intron | 25.0% |
| ! | TTGTTGCATATGCAAATATT+GGG | + | chr1_3:12995021-12995040 | Msa0104820:intron | 25.0% |
| !! | GACATGCTTTTAATAAGATA+TGG | + | chr1_3:12995250-12995269 | Msa0104820:intron | 25.0% |
| !! | TTGATATTTAGAGTCTGTTT+AGG | - | chr1_3:12995542-12995561 | None:intergenic | 25.0% |
| ! | AACAGACTCTAAATATCAAT+TGG | + | chr1_3:12995543-12995562 | Msa0104820:intron | 25.0% |
| ! | CTAGTTGTGAACATTTAAAT+AGG | + | chr1_3:12995620-12995639 | Msa0104820:intron | 25.0% |
| ! | ATACGCTCTATTTCAATATT+GGG | - | chr1_3:12996116-12996135 | None:intergenic | 25.0% |
| ! | AATACGCTCTATTTCAATAT+TGG | - | chr1_3:12996117-12996136 | None:intergenic | 25.0% |
| ! | TCAAGTAAGACAAATCTTTA+GGG | + | chr1_3:12996380-12996399 | Msa0104820:intron | 25.0% |
| ! | AATTTCTTTATTCCTTCCTT+TGG | - | chr1_3:12996486-12996505 | None:intergenic | 25.0% |
| ! | TGTTCTTGTAAAAAAGACTA+AGG | + | chr1_3:12996514-12996533 | Msa0104820:intron | 25.0% |
| ! | GTTCTTGTAAAAAAGACTAA+GGG | + | chr1_3:12996515-12996534 | Msa0104820:intron | 25.0% |
| ! | AAAACCTAAAAACAAGATGA+AGG | + | chr1_3:12996590-12996609 | Msa0104820:intron | 25.0% |
| !!! | AAAACCTTCATCTTGTTTTT+AGG | - | chr1_3:12996597-12996616 | None:intergenic | 25.0% |
| !! | TGAAGGTTTTGCAATTAAAA+CGG | + | chr1_3:12996607-12996626 | Msa0104820:intron | 25.0% |
| !! | TTTTGCAATTAAAACGGAAA+AGG | + | chr1_3:12996613-12996632 | Msa0104820:intron | 25.0% |
| !! | ATTTTATAGCTACTCTAGTT+TGG | + | chr1_3:12996751-12996770 | Msa0104820:intron | 25.0% |
| !! | ATGTTTGAAGTATGTAGTAA+GGG | + | chr1_3:12997008-12997027 | Msa0104820:intron | 25.0% |
| !!! | CTTCATATTTTGAGGTTATA+GGG | - | chr1_3:12997697-12997716 | None:intergenic | 25.0% |
| ! | ATAATAATATGCATGATAGC+TGG | - | chr1_3:12998006-12998025 | None:intergenic | 25.0% |
| ! | AGGTTCTTGACTTAATTAAA+AGG | + | chr1_3:12998462-12998481 | Msa0104820:exon | 25.0% |
| ! | GGTTCTTGACTTAATTAAAA+GGG | + | chr1_3:12998463-12998482 | Msa0104820:exon | 25.0% |
| ! | ATTAAGTAAGATACATGAGA+TGG | - | chr1_3:12998677-12998696 | None:intergenic | 25.0% |
| AATACGTGGAAGTTTATCAT+TGG | + | chr1_3:12988691-12988710 | Msa0104820:five_prime_UTR | 30.0% | |
| TGAATCTTGGTCCAATTTAA+TGG | - | chr1_3:12988770-12988789 | None:intergenic | 30.0% | |
| TGAATAAAGCTCTTGAATCT+TGG | - | chr1_3:12988783-12988802 | None:intergenic | 30.0% | |
| ! | AACAATAGAACATTTGGGTT+GGG | - | chr1_3:12988842-12988861 | None:intergenic | 30.0% |
| AAACAATAGAACATTTGGGT+TGG | - | chr1_3:12988843-12988862 | None:intergenic | 30.0% | |
| TATAATCCTTAGCCAAACTT+TGG | + | chr1_3:12988953-12988972 | Msa0104820:five_prime_UTR | 30.0% | |
| ATGTGAAGAATTAAGAGTCT+TGG | + | chr1_3:12988979-12988998 | Msa0104820:five_prime_UTR | 30.0% | |
| TGTGAAGAATTAAGAGTCTT+GGG | + | chr1_3:12988980-12988999 | Msa0104820:five_prime_UTR | 30.0% | |
| ! | TTTTCTTTTGGATACACAAG+AGG | + | chr1_3:12989012-12989031 | Msa0104820:five_prime_UTR | 30.0% |
| CTTTGGCATAAATTTATGGA+TGG | - | chr1_3:12989276-12989295 | None:intergenic | 30.0% | |
| !! | AACAATTTTTCAAAGAGGGA+GGG | - | chr1_3:12989389-12989408 | None:intergenic | 30.0% |
| TATACAGAACAATTTCATGC+TGG | - | chr1_3:12989448-12989467 | None:intergenic | 30.0% | |
| AGCATGAAATTGTTCTGTAT+AGG | + | chr1_3:12989447-12989466 | Msa0104820:intron | 30.0% | |
| ACTCAAACTCACTTCATTTA+AGG | - | chr1_3:12989487-12989506 | None:intergenic | 30.0% | |
| GTGATATATATTATCTCCGA+TGG | + | chr1_3:12989597-12989616 | Msa0104820:intron | 30.0% | |
| !! | CTCATCGACGTATTTTTATA+TGG | + | chr1_3:12989951-12989970 | Msa0104820:intron | 30.0% |
| !!! | TTTTTTGTGGAGATTACCAT+TGG | - | chr1_3:12990066-12990085 | None:intergenic | 30.0% |
| !!! | CGAATCATTTTGAAACAGTT+TGG | + | chr1_3:12990110-12990129 | Msa0104820:intron | 30.0% |
| TGCATCATTAGAGTAAAAAG+TGG | - | chr1_3:12990136-12990155 | None:intergenic | 30.0% | |
| TACATGTGAGTTAAACTTGT+GGG | - | chr1_3:12990183-12990202 | None:intergenic | 30.0% | |
| TTACATGTGAGTTAAACTTG+TGG | - | chr1_3:12990184-12990203 | None:intergenic | 30.0% | |
| ! | TATAGATTTTGTAGTCAGCA+AGG | - | chr1_3:12990422-12990441 | None:intergenic | 30.0% |
| TAAAACAGATGTTGGGAAAT+AGG | - | chr1_3:12990477-12990496 | None:intergenic | 30.0% | |
| CTTGTAGTAAAACAGATGTT+GGG | - | chr1_3:12990484-12990503 | None:intergenic | 30.0% | |
| ACTTGTAGTAAAACAGATGT+TGG | - | chr1_3:12990485-12990504 | None:intergenic | 30.0% | |
| AATATATGGAGATGTTGTGT+TGG | - | chr1_3:12990560-12990579 | None:intergenic | 30.0% | |
| ! | TCGGAACAAATACTTTAGAA+AGG | + | chr1_3:12990790-12990809 | Msa0104820:intron | 30.0% |
| !!! | TTCAGTTTTTTGTTGGTGAT+GGG | - | chr1_3:12991051-12991070 | None:intergenic | 30.0% |
| !!! | TTTCAGTTTTTTGTTGGTGA+TGG | - | chr1_3:12991052-12991071 | None:intergenic | 30.0% |
| !!! | GTTTGGTTTCAGTTTTTTGT+TGG | - | chr1_3:12991058-12991077 | None:intergenic | 30.0% |
| TAATTAAGATACCTCCTCTT+TGG | + | chr1_3:12991187-12991206 | Msa0104820:intron | 30.0% | |
| TGGTAAGTCTCATAATCTAA+CGG | - | chr1_3:12991248-12991267 | None:intergenic | 30.0% | |
| !!! | TGGTTTTTTATCCAACATGA+CGG | - | chr1_3:12991331-12991350 | None:intergenic | 30.0% |
| AGTTTGACCATTTCATCTAT+CGG | - | chr1_3:12991500-12991519 | None:intergenic | 30.0% | |
| CTAAGAAGTTCAGATTGATT+AGG | - | chr1_3:12991529-12991548 | None:intergenic | 30.0% | |
| CTTGAAGAAATCAACAACAA+AGG | - | chr1_3:12991567-12991586 | None:intergenic | 30.0% | |
| ! | TTTTGCAAAATCACGTGAAT+CGG | + | chr1_3:12991945-12991964 | Msa0104820:intron | 30.0% |
| ACAAGTAGTATTCGACTATT+CGG | + | chr1_3:12992191-12992210 | Msa0104820:intron | 30.0% | |
| !! | CACATTTGATTTCCGTTTTA+AGG | - | chr1_3:12992324-12992343 | None:intergenic | 30.0% |
| ACTTTGATAGAAGTTCAGTT+TGG | + | chr1_3:12992368-12992387 | Msa0104820:intron | 30.0% | |
| GAAGACTATTAGACATATGA+AGG | + | chr1_3:12992400-12992419 | Msa0104820:intron | 30.0% | |
| AGACTATTAGACATATGAAG+GGG | + | chr1_3:12992402-12992421 | Msa0104820:intron | 30.0% | |
| ATAGACGCACAAATATATTG+TGG | + | chr1_3:12992519-12992538 | Msa0104820:intron | 30.0% | |
| ACAAATATATTGTGGAGACT+GGG | + | chr1_3:12992527-12992546 | Msa0104820:intron | 30.0% | |
| GCATAATCCTAATAACAGAA+GGG | - | chr1_3:12992580-12992599 | None:intergenic | 30.0% | |
| ! | TTGAAACAATCTGAAGTAAG+AGG | - | chr1_3:12992652-12992671 | None:intergenic | 30.0% |
| !!! | CTATTTTAGAATCAAAGACG+TGG | - | chr1_3:12992722-12992741 | None:intergenic | 30.0% |
| AAACAACTAGATATCACATC+TGG | - | chr1_3:12993190-12993209 | None:intergenic | 30.0% | |
| TGAAGTCACAAACAACAATA+TGG | + | chr1_3:12993379-12993398 | Msa0104820:intron | 30.0% | |
| ATATGGATACATATGACCTT+TGG | + | chr1_3:12993429-12993448 | Msa0104820:intron | 30.0% | |
| TAGTTATGTTACCATAGGAA+TGG | - | chr1_3:12993486-12993505 | None:intergenic | 30.0% | |
| AGCAAAAAAGTCTAGTTAGA+GGG | - | chr1_3:12993670-12993689 | None:intergenic | 30.0% | |
| AAGCAAAAAAGTCTAGTTAG+AGG | - | chr1_3:12993671-12993690 | None:intergenic | 30.0% | |
| TATTTCAAGGGAAGTTAACA+GGG | - | chr1_3:12993816-12993835 | None:intergenic | 30.0% | |
| !! | GCATTTAATTTTATGCTCTG+CGG | - | chr1_3:12994027-12994046 | None:intergenic | 30.0% |
| ATAACTAGTCCTTTGTTACA+AGG | + | chr1_3:12994089-12994108 | Msa0104820:intron | 30.0% | |
| ATTTAGCAATTCACTGAAAG+TGG | - | chr1_3:12994640-12994659 | None:intergenic | 30.0% | |
| AATGTTTGGCCTAATTTACT+AGG | - | chr1_3:12994675-12994694 | None:intergenic | 30.0% | |
| AGTAAATTAGGCCAAACATT+AGG | + | chr1_3:12994675-12994694 | Msa0104820:intron | 30.0% | |
| TTATCTACATGTGAAAACCA+TGG | - | chr1_3:12994739-12994758 | None:intergenic | 30.0% | |
| ! | CTTTGGTAATTATGAAGTCA+AGG | - | chr1_3:12994860-12994879 | None:intergenic | 30.0% |
| ATCAGAAGATATGTAAGCTT+TGG | - | chr1_3:12994877-12994896 | None:intergenic | 30.0% | |
| AAAGCTTACATATCTTCTGA+TGG | + | chr1_3:12994876-12994895 | Msa0104820:CDS | 30.0% | |
| ATGAACAGTATTTCATGTCA+CGG | + | chr1_3:12995142-12995161 | Msa0104820:intron | 30.0% | |
| !! | AGTAGGCTTTATCTTTGTTT+TGG | + | chr1_3:12995286-12995305 | Msa0104820:intron | 30.0% |
| GGAAAAGAAACCTAAGTATA+CGG | + | chr1_3:12995307-12995326 | Msa0104820:intron | 30.0% | |
| AGTGCATTACACATTCAAAA+GGG | - | chr1_3:12995407-12995426 | None:intergenic | 30.0% | |
| AAGTGCATTACACATTCAAA+AGG | - | chr1_3:12995408-12995427 | None:intergenic | 30.0% | |
| TGTAATGCACTTACAATCTT+TGG | + | chr1_3:12995416-12995435 | Msa0104820:intron | 30.0% | |
| ACTATGAACACTATCAGTAA+GGG | - | chr1_3:12995469-12995488 | None:intergenic | 30.0% | |
| AACTATGAACACTATCAGTA+AGG | - | chr1_3:12995470-12995489 | None:intergenic | 30.0% | |
| ! | TTCACAACTAGTTGATACAA+GGG | - | chr1_3:12995611-12995630 | None:intergenic | 30.0% |
| TGAACATTTAAATAGGCTCT+AGG | + | chr1_3:12995627-12995646 | Msa0104820:intron | 30.0% | |
| TTGTTGCATCATTGACATAA+AGG | - | chr1_3:12995860-12995879 | None:intergenic | 30.0% | |
| TATTGAAATAGAGCGTATTG+AGG | + | chr1_3:12996118-12996137 | Msa0104820:CDS | 30.0% | |
| GTCAAGTAAGACAAATCTTT+AGG | + | chr1_3:12996379-12996398 | Msa0104820:intron | 30.0% | |
| TAGCAAACAAAAATATTGCG+AGG | + | chr1_3:12996441-12996460 | Msa0104820:intron | 30.0% | |
| TCAAAACATTAGGGTTTGTA+TGG | - | chr1_3:12996662-12996681 | None:intergenic | 30.0% | |
| GTTCAAGGATCAAAACATTA+GGG | - | chr1_3:12996671-12996690 | None:intergenic | 30.0% | |
| TGTTCAAGGATCAAAACATT+AGG | - | chr1_3:12996672-12996691 | None:intergenic | 30.0% | |
| GTTGTTCTCATAAACTATCT+TGG | - | chr1_3:12996894-12996913 | None:intergenic | 30.0% | |
| GGGATAAACAACTTAATCTT+CGG | - | chr1_3:12996972-12996991 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTTATCCCATC+AGG | + | chr1_3:12996975-12996994 | Msa0104820:intron | 30.0% |
| ! | TTAAGTTGTTTATCCCATCA+GGG | + | chr1_3:12996976-12996995 | Msa0104820:intron | 30.0% |
| ! | GATGTTTGAAGTATGTAGTA+AGG | + | chr1_3:12997007-12997026 | Msa0104820:intron | 30.0% |
| ! | TTTGAGGTAGAATGACAAAA+TGG | + | chr1_3:12997082-12997101 | Msa0104820:intron | 30.0% |
| TTGTTGATCTGGTAATTCTT+AGG | + | chr1_3:12997121-12997140 | Msa0104820:intron | 30.0% | |
| AAAAGATAAGGATGAACTTC+TGG | + | chr1_3:12997299-12997318 | Msa0104820:intron | 30.0% | |
| AAGTCTTTCATGCTCTATTA+TGG | + | chr1_3:12997340-12997359 | Msa0104820:intron | 30.0% | |
| AAGAACACATATGAAGCTAT+GGG | - | chr1_3:12997406-12997425 | None:intergenic | 30.0% | |
| GATTTGAATGATATTACGTG+TGG | - | chr1_3:12997675-12997694 | None:intergenic | 30.0% | |
| !!! | CCTTCATATTTTGAGGTTAT+AGG | - | chr1_3:12997698-12997717 | None:intergenic | 30.0% |
| CCTATAACCTCAAAATATGA+AGG | + | chr1_3:12997695-12997714 | Msa0104820:intron | 30.0% | |
| CCTGTAAGATATAAAAACTG+TGG | - | chr1_3:12997861-12997880 | None:intergenic | 30.0% | |
| ! | CCACAGTTTTTATATCTTAC+AGG | + | chr1_3:12997858-12997877 | Msa0104820:intron | 30.0% |
| ATATCTTACAGGACTATAGA+TGG | + | chr1_3:12997869-12997888 | Msa0104820:intron | 30.0% | |
| ! | TTGAACTATCGTGATTTTGT+AGG | + | chr1_3:12997913-12997932 | Msa0104820:intron | 30.0% |
| ! | TGAACTATCGTGATTTTGTA+GGG | + | chr1_3:12997914-12997933 | Msa0104820:intron | 30.0% |
| ATTTACAAATCACAAGCAAC+CGG | - | chr1_3:12998515-12998534 | None:intergenic | 30.0% | |
| ! | AACATCTTACAAGCATTGTT+TGG | - | chr1_3:12998622-12998641 | None:intergenic | 30.0% |
| GAGTGTGTTGTATTTATACA+AGG | + | chr1_3:12998727-12998746 | Msa0104820:three_prime_UTR | 30.0% | |
| ! | GACATTTGAAGTATATATGC+AGG | + | chr1_3:12998755-12998774 | Msa0104820:three_prime_UTR | 30.0% |
| !! | ACAATAGAACATTTGGGTTG+GGG | - | chr1_3:12988841-12988860 | None:intergenic | 35.0% |
| TATTGTTTGTCATTCCAACG+TGG | + | chr1_3:12988855-12988874 | Msa0104820:five_prime_UTR | 35.0% | |
| TTCTATTATGCTATCCACGT+TGG | - | chr1_3:12988872-12988891 | None:intergenic | 35.0% | |
| GTGAAGAATTAAGAGTCTTG+GGG | + | chr1_3:12988981-12989000 | Msa0104820:five_prime_UTR | 35.0% | |
| !! | GAACAATTTTTCAAAGAGGG+AGG | - | chr1_3:12989390-12989409 | None:intergenic | 35.0% |
| !! | TGAAGTGAGTTTGAGTTTTG+TGG | + | chr1_3:12989491-12989510 | Msa0104820:intron | 35.0% |
| GTGGTATTATCTTGTGATCT+TGG | + | chr1_3:12989624-12989643 | Msa0104820:intron | 35.0% | |
| TTACCATTGGAGATGTTCTT+AGG | - | chr1_3:12990053-12990072 | None:intergenic | 35.0% | |
| GGACTAGATATGAGTTTGTA+AGG | - | chr1_3:12990162-12990181 | None:intergenic | 35.0% | |
| CAATGAGTTTGATCGAAGTA+TGG | - | chr1_3:12990307-12990326 | None:intergenic | 35.0% | |
| ACTAGATACATAGAAAGACC+CGG | - | chr1_3:12990369-12990388 | None:intergenic | 35.0% | |
| ATGACTACAAAGAGAGAGTT+GGG | - | chr1_3:12990513-12990532 | None:intergenic | 35.0% | |
| TATGACTACAAAGAGAGAGT+TGG | - | chr1_3:12990514-12990533 | None:intergenic | 35.0% | |
| !!! | CGCTTATTTTACTCGCATAT+TGG | + | chr1_3:12990583-12990602 | Msa0104820:intron | 35.0% |
| GGGTGTTTGAACTTACATAT+TGG | + | chr1_3:12990874-12990893 | Msa0104820:intron | 35.0% | |
| GAAGTCACGTCTTCAATTTA+CGG | + | chr1_3:12990920-12990939 | Msa0104820:intron | 35.0% | |
| !!! | TTACGGAGCCTCAATTTTTT+TGG | + | chr1_3:12990937-12990956 | Msa0104820:intron | 35.0% |
| ATGAGACTTACCAGATGTTA+AGG | + | chr1_3:12991255-12991274 | Msa0104820:intron | 35.0% | |
| ACATGACTTACCTTAACATC+TGG | - | chr1_3:12991268-12991287 | None:intergenic | 35.0% | |
| ! | TTTTATCCAACATGACGGTA+CGG | - | chr1_3:12991326-12991345 | None:intergenic | 35.0% |
| !! | AGAGTGTTGATGATAGTTGT+TGG | - | chr1_3:12991779-12991798 | None:intergenic | 35.0% |
| AACTAATATAGTACACCCTC+CGG | + | chr1_3:12992028-12992047 | Msa0104820:intron | 35.0% | |
| TGCTTGCACACAATTTACAT+CGG | + | chr1_3:12992292-12992311 | Msa0104820:intron | 35.0% | |
| !!! | TGATTTCCGTTTTAAGGGAA+AGG | - | chr1_3:12992318-12992337 | None:intergenic | 35.0% |
| ATATGAAGGGGTTGAGTTTA+AGG | + | chr1_3:12992414-12992433 | Msa0104820:intron | 35.0% | |
| ACCATTCATGTTTAAGTACG+AGG | - | chr1_3:12992446-12992465 | None:intergenic | 35.0% | |
| CTACACACTCGTCATTTAAA+TGG | + | chr1_3:12992487-12992506 | Msa0104820:intron | 35.0% | |
| CACTCGTCATTTAAATGGTT+CGG | + | chr1_3:12992492-12992511 | Msa0104820:intron | 35.0% | |
| CACAAATATATTGTGGAGAC+TGG | + | chr1_3:12992526-12992545 | Msa0104820:intron | 35.0% | |
| GGCATAATCCTAATAACAGA+AGG | - | chr1_3:12992581-12992600 | None:intergenic | 35.0% | |
| CATCTAACTATCCTGCATTT+GGG | + | chr1_3:12992876-12992895 | Msa0104820:intron | 35.0% | |
| ATGCAGAGTTACCAGATAAA+GGG | - | chr1_3:12992905-12992924 | None:intergenic | 35.0% | |
| AATGCAGAGTTACCAGATAA+AGG | - | chr1_3:12992906-12992925 | None:intergenic | 35.0% | |
| TTATCTGGTAACTCTGCATT+TGG | + | chr1_3:12992906-12992925 | Msa0104820:intron | 35.0% | |
| CTGAAGGATTATTAGATGCA+CGG | - | chr1_3:12992980-12992999 | None:intergenic | 35.0% | |
| TGCATCTAATAATCCTTCAG+TGG | + | chr1_3:12992980-12992999 | Msa0104820:intron | 35.0% | |
| ATACATATGACCTTTGGTTG+CGG | + | chr1_3:12993435-12993454 | Msa0104820:intron | 35.0% | |
| GAAACCTTATTCCATTCCTA+TGG | + | chr1_3:12993472-12993491 | Msa0104820:intron | 35.0% | |
| GTTACCATAGGAATGGAATA+AGG | - | chr1_3:12993479-12993498 | None:intergenic | 35.0% | |
| GGACTTAGTTATGTTACCAT+AGG | - | chr1_3:12993491-12993510 | None:intergenic | 35.0% | |
| TTATTGTATCTCACCCAGTA+AGG | + | chr1_3:12993598-12993617 | Msa0104820:intron | 35.0% | |
| CAAAAAAGTCTAGTTAGAGG+GGG | - | chr1_3:12993668-12993687 | None:intergenic | 35.0% | |
| GCAAAAAAGTCTAGTTAGAG+GGG | - | chr1_3:12993669-12993688 | None:intergenic | 35.0% | |
| AGCAATTTATTGACGAGAGA+AGG | + | chr1_3:12993709-12993728 | Msa0104820:five_prime_UTR | 35.0% | |
| AATTTATTGACGAGAGAAGG+TGG | + | chr1_3:12993712-12993731 | Msa0104820:five_prime_UTR | 35.0% | |
| GTTGAATGGCAAAAGTTTGT+TGG | + | chr1_3:12993734-12993753 | Msa0104820:exon | 35.0% | |
| TCATACTCAGGATCAAAGTA+TGG | - | chr1_3:12993760-12993779 | None:intergenic | 35.0% | |
| GTATTTCAAGGGAAGTTAAC+AGG | - | chr1_3:12993817-12993836 | None:intergenic | 35.0% | |
| TTACACTCCTTGTGAAATTG+AGG | + | chr1_3:12994149-12994168 | Msa0104820:intron | 35.0% | |
| CCATATACCTCAATTTCACA+AGG | - | chr1_3:12994159-12994178 | None:intergenic | 35.0% | |
| CCTTGTGAAATTGAGGTATA+TGG | + | chr1_3:12994156-12994175 | Msa0104820:intron | 35.0% | |
| TGTGAAATTGAGGTATATGG+TGG | + | chr1_3:12994159-12994178 | Msa0104820:intron | 35.0% | |
| GTGAAATTGAGGTATATGGT+GGG | + | chr1_3:12994160-12994179 | Msa0104820:intron | 35.0% | |
| !! | AAACTCTGTTTCTAATTCGC+AGG | + | chr1_3:12994220-12994239 | Msa0104820:intron | 35.0% |
| !! | AACTCTGTTTCTAATTCGCA+GGG | + | chr1_3:12994221-12994240 | Msa0104820:intron | 35.0% |
| !!! | TCACTGAAAGTGGTTTTAAC+AGG | - | chr1_3:12994630-12994649 | None:intergenic | 35.0% |
| !! | ATTGATAGCGTCAATAAACC+CGG | + | chr1_3:12994801-12994820 | Msa0104820:CDS | 35.0% |
| ACATATCTTCTGATGGTAGT+TGG | + | chr1_3:12994883-12994902 | Msa0104820:CDS | 35.0% | |
| ! | TTCTGATGGTAGTTGGTTTA+TGG | + | chr1_3:12994890-12994909 | Msa0104820:CDS | 35.0% |
| AGCATGTCAGATAAAAATCG+AGG | - | chr1_3:12995238-12995257 | None:intergenic | 35.0% | |
| ! | ATGGTAGCAATGCTTTTAGT+AGG | + | chr1_3:12995269-12995288 | Msa0104820:intron | 35.0% |
| AATCATGCTACCGTATACTT+AGG | - | chr1_3:12995320-12995339 | None:intergenic | 35.0% | |
| GTGCATTACACATTCAAAAG+GGG | - | chr1_3:12995406-12995425 | None:intergenic | 35.0% | |
| AGTCTGTTTAGGAAATAGCA+GGG | - | chr1_3:12995531-12995550 | None:intergenic | 35.0% | |
| ! | GTTCACAACTAGTTGATACA+AGG | - | chr1_3:12995612-12995631 | None:intergenic | 35.0% |
| ATATCTCAGACAAAAGACCT+GGG | - | chr1_3:12995761-12995780 | None:intergenic | 35.0% | |
| TATCAGCAAACAACATTTGG+TGG | - | chr1_3:12996028-12996047 | None:intergenic | 35.0% | |
| ! | ACCAAATGTTGTTTGCTGAT+AGG | + | chr1_3:12996027-12996046 | Msa0104820:CDS | 35.0% |
| ! | CCAAATGTTGTTTGCTGATA+GGG | + | chr1_3:12996028-12996047 | Msa0104820:CDS | 35.0% |
| ATAGAGCGTATTGAGGAAAA+AGG | + | chr1_3:12996125-12996144 | Msa0104820:CDS | 35.0% | |
| TTAGTGTGAGATGCAAAGAT+CGG | + | chr1_3:12996159-12996178 | Msa0104820:CDS | 35.0% | |
| !!! | GAGGAATTTTTTAGTTCAGC+TGG | + | chr1_3:12996460-12996479 | Msa0104820:intron | 35.0% |
| ! | ATAGCTACTCTAGTTTGGAT+TGG | + | chr1_3:12996756-12996775 | Msa0104820:intron | 35.0% |
| GCTTATTTGAGCTTATCTAC+TGG | + | chr1_3:12996778-12996797 | Msa0104820:intron | 35.0% | |
| TTAGCACTTGTGAAACTGTT+TGG | + | chr1_3:12996803-12996822 | Msa0104820:intron | 35.0% | |
| TAGCACTTGTGAAACTGTTT+GGG | + | chr1_3:12996804-12996823 | Msa0104820:intron | 35.0% | |
| TCTCATAAACTATCTTGGAG+AGG | - | chr1_3:12996889-12996908 | None:intergenic | 35.0% | |
| ! | TTTGAAGTATGTAGTAAGGG+AGG | + | chr1_3:12997011-12997030 | Msa0104820:intron | 35.0% |
| TGTAGACTAAGTTGTTGATC+TGG | + | chr1_3:12997110-12997129 | Msa0104820:intron | 35.0% | |
| !! | ATTCTTAGGAGTACTTCATC+AGG | + | chr1_3:12997135-12997154 | Msa0104820:intron | 35.0% |
| TATTCAAAGAAGAGTAAGCG+AGG | + | chr1_3:12997226-12997245 | Msa0104820:CDS | 35.0% | |
| TCATGCTCTATTATGGAACT+TGG | + | chr1_3:12997347-12997366 | Msa0104820:intron | 35.0% | |
| CTATTATGGAACTTGGTTTC+TGG | + | chr1_3:12997354-12997373 | Msa0104820:intron | 35.0% | |
| !! | TTCTGGCTTAATGTTTCTCT+TGG | + | chr1_3:12997371-12997390 | Msa0104820:intron | 35.0% |
| AGAACACATATGAAGCTATG+GGG | - | chr1_3:12997405-12997424 | None:intergenic | 35.0% | |
| GAAGAACACATATGAAGCTA+TGG | - | chr1_3:12997407-12997426 | None:intergenic | 35.0% | |
| !! | TTGTTTTGTTGCGAATGGTA+CGG | + | chr1_3:12997534-12997553 | Msa0104820:intron | 35.0% |
| AATGGTACGGTATACATACA+TGG | + | chr1_3:12997547-12997566 | Msa0104820:intron | 35.0% | |
| !! | GGTAAAAGTTTTATAGGCCA+AGG | + | chr1_3:12997890-12997909 | Msa0104820:intron | 35.0% |
| AAATCACGATAGTTCAACCT+TGG | - | chr1_3:12997910-12997929 | None:intergenic | 35.0% | |
| TCGAGCATAAATATGACTGA+TGG | - | chr1_3:12997983-12998002 | None:intergenic | 35.0% | |
| AGAACAGCTTAACAGTTTGT+AGG | + | chr1_3:12998223-12998242 | Msa0104820:CDS | 35.0% | |
| GAACAGCTTAACAGTTTGTA+GGG | + | chr1_3:12998224-12998243 | Msa0104820:CDS | 35.0% | |
| ATTTAGTCCTTTCTCTCCTA+TGG | - | chr1_3:12998262-12998281 | None:intergenic | 35.0% | |
| TTCTATGTGAGAGATGCATA+TGG | + | chr1_3:12998285-12998304 | Msa0104820:CDS | 35.0% | |
| CAATGATGTTCATATCCACA+GGG | - | chr1_3:12998314-12998333 | None:intergenic | 35.0% | |
| TCAATGATGTTCATATCCAC+AGG | - | chr1_3:12998315-12998334 | None:intergenic | 35.0% | |
| CTAGAGTAAGCTTCTTCTTT+GGG | + | chr1_3:12998427-12998446 | Msa0104820:CDS | 35.0% | |
| TCATGTACCTATTCTGATTC+CGG | + | chr1_3:12998493-12998512 | Msa0104820:three_prime_UTR | 35.0% | |
| ACATGTTATGATAGGGAAGA+TGG | - | chr1_3:12998654-12998673 | None:intergenic | 35.0% | |
| GAGATGGACATGTTATGATA+GGG | - | chr1_3:12998661-12998680 | None:intergenic | 35.0% | |
| TGAGATGGACATGTTATGAT+AGG | - | chr1_3:12998662-12998681 | None:intergenic | 35.0% | |
| TATGCACTACTTGGAATACG+TGG | + | chr1_3:12988677-12988696 | Msa0104820:five_prime_UTR | 40.0% | |
| ! | GTGGAAGTTTATCATTGGCT+TGG | + | chr1_3:12988696-12988715 | Msa0104820:five_prime_UTR | 40.0% |
| AATCCTTAGCCAAACTTTGG+AGG | + | chr1_3:12988956-12988975 | Msa0104820:five_prime_UTR | 40.0% | |
| TCTTCACATCCTCCAAAGTT+TGG | - | chr1_3:12988968-12988987 | None:intergenic | 40.0% | |
| AGAATTAAGAGTCTTGGGGT+TGG | + | chr1_3:12988985-12989004 | Msa0104820:five_prime_UTR | 40.0% | |
| !!! | GGGGTTGGACTTTTTTCTTT+TGG | + | chr1_3:12989000-12989019 | Msa0104820:five_prime_UTR | 40.0% |
| !! | GAGGAGTGCTAAATACTACA+GGG | - | chr1_3:12989367-12989386 | None:intergenic | 40.0% |
| !! | AATTTTTCAAAGAGGGAGGG+AGG | - | chr1_3:12989386-12989405 | None:intergenic | 40.0% |
| ATATATTATCTCCGATGGCC+TGG | + | chr1_3:12989602-12989621 | Msa0104820:intron | 40.0% | |
| GATCACAAGATAATACCACC+AGG | - | chr1_3:12989623-12989642 | None:intergenic | 40.0% | |
| ACTAAGTGAAGTTCGCTACA+TGG | + | chr1_3:12990236-12990255 | Msa0104820:intron | 40.0% | |
| GGAAATAGGCTTAGATGGTT+TGG | - | chr1_3:12990463-12990482 | None:intergenic | 40.0% | |
| TGTTGGGAAATAGGCTTAGA+TGG | - | chr1_3:12990468-12990487 | None:intergenic | 40.0% | |
| TGACTACAAAGAGAGAGTTG+GGG | - | chr1_3:12990512-12990531 | None:intergenic | 40.0% | |
| CTTGTTCATCAAATCGCCAT+TGG | - | chr1_3:12990852-12990871 | None:intergenic | 40.0% | |
| ATGGCGATTTGATGAACAAG+TGG | + | chr1_3:12990852-12990871 | Msa0104820:intron | 40.0% | |
| TGGCGATTTGATGAACAAGT+GGG | + | chr1_3:12990853-12990872 | Msa0104820:intron | 40.0% | |
| TACATATTGGTGAACCAAGC+AGG | + | chr1_3:12990887-12990906 | Msa0104820:intron | 40.0% | |
| ACATATTGGTGAACCAAGCA+GGG | + | chr1_3:12990888-12990907 | Msa0104820:intron | 40.0% | |
| AATTGAAGACGTGACTTCGA+TGG | - | chr1_3:12990918-12990937 | None:intergenic | 40.0% | |
| ! | ATACCTCCTCTTTGGTGTAT+GGG | + | chr1_3:12991195-12991214 | Msa0104820:intron | 40.0% |
| GTCTCATAATCTAACGGTGA+CGG | - | chr1_3:12991242-12991261 | None:intergenic | 40.0% | |
| ATCAATGAAGAAGGTGGTAG+TGG | - | chr1_3:12991363-12991382 | None:intergenic | 40.0% | |
| ! | CCATGTAAGCTAGGATTTTG+CGG | - | chr1_3:12991389-12991408 | None:intergenic | 40.0% |
| ATCTTCATGCCATGTAAGCT+AGG | - | chr1_3:12991398-12991417 | None:intergenic | 40.0% | |
| ATCAACAACAAAGGCTCTCA+AGG | - | chr1_3:12991558-12991577 | None:intergenic | 40.0% | |
| CGCGTGAAAGATGATTAGAT+TGG | + | chr1_3:12991591-12991610 | Msa0104820:intron | 40.0% | |
| ATCAACACTCTGTGCATGTT+TGG | + | chr1_3:12991788-12991807 | Msa0104820:intron | 40.0% | |
| TGCATGTTTGGCATCATTGT+GGG | + | chr1_3:12991800-12991819 | Msa0104820:intron | 40.0% | |
| !!! | TGGTTTTGTCAGAATCACTG+CGG | + | chr1_3:12991894-12991913 | Msa0104820:intron | 40.0% |
| !! | GAAACTTTGGAGCAAATGTG+TGG | - | chr1_3:12991998-12992017 | None:intergenic | 40.0% |
| TGCTTATATTAGTGACCGGA+GGG | - | chr1_3:12992163-12992182 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr1_3:12992162-12992181 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1_3:12992162-12992181 | Msa0104820:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1_3:12992163-12992182 | Msa0104820:intron | 40.0% | |
| CATGTTTAAGTACGAGGCTA+AGG | - | chr1_3:12992440-12992459 | None:intergenic | 40.0% | |
| GCCTCGTACTTAAACATGAA+TGG | + | chr1_3:12992442-12992461 | Msa0104820:intron | 40.0% | |
| ! | ATTACTCTTTTTCCACGAGC+CGG | + | chr1_3:12992550-12992569 | Msa0104820:intron | 40.0% |
| CTAATAACAGAAGGGAAGAC+CGG | - | chr1_3:12992572-12992591 | None:intergenic | 40.0% | |
| GTAAGAGGACTCAATGTTGT+GGG | - | chr1_3:12992637-12992656 | None:intergenic | 40.0% | |
| AGTAAGAGGACTCAATGTTG+TGG | - | chr1_3:12992638-12992657 | None:intergenic | 40.0% | |
| AATAGTTACAAGTCGGTCGA+CGG | + | chr1_3:12992737-12992756 | Msa0104820:intron | 40.0% | |
| TTACCAAATACATGGTCAGC+TGG | - | chr1_3:12992805-12992824 | None:intergenic | 40.0% | |
| ATGCAGGGTTACCAAATACA+TGG | - | chr1_3:12992813-12992832 | None:intergenic | 40.0% | |
| ATGCACGATTACTAGATGCA+GGG | - | chr1_3:12992828-12992847 | None:intergenic | 40.0% | |
| CATCTTTGTGATCCTGCAAT+TGG | + | chr1_3:12992845-12992864 | Msa0104820:intron | 40.0% | |
| ATGCAGGATAGTTAGATGCA+GGG | - | chr1_3:12992874-12992893 | None:intergenic | 40.0% | |
| AATGCAGGATAGTTAGATGC+AGG | - | chr1_3:12992875-12992894 | None:intergenic | 40.0% | |
| GCATCTAACTATCCTGCATT+TGG | + | chr1_3:12992875-12992894 | Msa0104820:intron | 40.0% | |
| ATGCAGGATTGTTAGATGCA+AGG | - | chr1_3:12992935-12992954 | None:intergenic | 40.0% | |
| AATGCACATTCACAAGATGC+AGG | - | chr1_3:12992951-12992970 | None:intergenic | 40.0% | |
| GCATCTTGTGAATGTGCATT+TGG | + | chr1_3:12992951-12992970 | Msa0104820:intron | 40.0% | |
| CATTGTCTGTCACATAGTCA+TGG | + | chr1_3:12993406-12993425 | Msa0104820:intron | 40.0% | |
| CTGTCACATAGTCATGGATA+TGG | + | chr1_3:12993412-12993431 | Msa0104820:intron | 40.0% | |
| AGAGCAACAGACCATAGAAA+AGG | - | chr1_3:12993548-12993567 | None:intergenic | 40.0% | |
| GAGATACAATAAGCACATGG+AGG | - | chr1_3:12993590-12993609 | None:intergenic | 40.0% | |
| GGTGAGATACAATAAGCACA+TGG | - | chr1_3:12993593-12993612 | None:intergenic | 40.0% | |
| GTAGAATTCACTGCCTTACT+GGG | - | chr1_3:12993614-12993633 | None:intergenic | 40.0% | |
| TGTAGAATTCACTGCCTTAC+TGG | - | chr1_3:12993615-12993634 | None:intergenic | 40.0% | |
| TTGCTGAAGTTCTCATACTC+AGG | - | chr1_3:12993772-12993791 | None:intergenic | 40.0% | |
| TGACATCGACCTTGTAACAA+AGG | - | chr1_3:12994101-12994120 | None:intergenic | 40.0% | |
| TGTAACCTATGACACCACTA+GGG | - | chr1_3:12994134-12994153 | None:intergenic | 40.0% | |
| CATAAACGAGCAACTTCTTC+TGG | - | chr1_3:12994198-12994217 | None:intergenic | 40.0% | |
| CAGAAGAAGTTGCTCGTTTA+TGG | + | chr1_3:12994196-12994215 | Msa0104820:intron | 40.0% | |
| CCTTGATCAGTGTACAATCA+TGG | - | chr1_3:12994269-12994288 | None:intergenic | 40.0% | |
| CCATGATTGTACACTGATCA+AGG | + | chr1_3:12994266-12994285 | Msa0104820:CDS | 40.0% | |
| GCGAATCAAGACTCAAAATG+CGG | - | chr1_3:12994336-12994355 | None:intergenic | 40.0% | |
| ! | AGTCTTGATTCGCTATCTGA+AGG | + | chr1_3:12994343-12994362 | Msa0104820:intron | 40.0% |
| TTTGGTCAACAAAAAGCCAC+AGG | - | chr1_3:12994403-12994422 | None:intergenic | 40.0% | |
| !! | ACTAATGATGATGGCCACTT+GGG | - | chr1_3:12994705-12994724 | None:intergenic | 40.0% |
| !! | AACTAATGATGATGGCCACT+TGG | - | chr1_3:12994706-12994725 | None:intergenic | 40.0% |
| TTATGAAGTCAAGGTCTGTC+AGG | - | chr1_3:12994851-12994870 | None:intergenic | 40.0% | |
| ! | GATGGTAGTTGGTTTATGGA+TGG | + | chr1_3:12994894-12994913 | Msa0104820:CDS | 40.0% |
| GAATGTGTATGTTGTAGGCA+AGG | - | chr1_3:12995060-12995079 | None:intergenic | 40.0% | |
| AGCACGAATGTGTATGTTGT+AGG | - | chr1_3:12995065-12995084 | None:intergenic | 40.0% | |
| TACACATTCAAAAGGGGAGA+CGG | - | chr1_3:12995400-12995419 | None:intergenic | 40.0% | |
| GAGTCTGTTTAGGAAATAGC+AGG | - | chr1_3:12995532-12995551 | None:intergenic | 40.0% | |
| !! | TAAATAGGCTCTAGGACCAA+AGG | + | chr1_3:12995635-12995654 | Msa0104820:intron | 40.0% |
| !! | AAATAGGCTCTAGGACCAAA+GGG | + | chr1_3:12995636-12995655 | Msa0104820:intron | 40.0% |
| AATGGCTGTATGATCACCAA+TGG | - | chr1_3:12995718-12995737 | None:intergenic | 40.0% | |
| GATATCTCAGACAAAAGACC+TGG | - | chr1_3:12995762-12995781 | None:intergenic | 40.0% | |
| CAGCTGCAATCACATTGAAT+TGG | - | chr1_3:12995803-12995822 | None:intergenic | 40.0% | |
| ATGTGATTGCAGCTGAAGTT+TGG | + | chr1_3:12995808-12995827 | Msa0104820:CDS | 40.0% | |
| CTGAAGTTTGGACTCATAAC+AGG | + | chr1_3:12995820-12995839 | Msa0104820:CDS | 40.0% | |
| TTGAATCATCATCCACAGCT+TGG | - | chr1_3:12995884-12995903 | None:intergenic | 40.0% | |
| CCCTATCAGCAAACAACATT+TGG | - | chr1_3:12996031-12996050 | None:intergenic | 40.0% | |
| TCAATATTGGGCCTGAAAGA+GGG | - | chr1_3:12996104-12996123 | None:intergenic | 40.0% | |
| TTCAATATTGGGCCTGAAAG+AGG | - | chr1_3:12996105-12996124 | None:intergenic | 40.0% | |
| TAGTGTGAGATGCAAAGATC+GGG | + | chr1_3:12996160-12996179 | Msa0104820:CDS | 40.0% | |
| ATGCATACCTGTGAAGCATA+AGG | - | chr1_3:12996266-12996285 | None:intergenic | 40.0% | |
| !!! | TTTTTAGTTCAGCTGGCCAA+AGG | + | chr1_3:12996467-12996486 | Msa0104820:intron | 40.0% |
| GCAAACAAAGGATGTGTTCA+AGG | - | chr1_3:12996686-12996705 | None:intergenic | 40.0% | |
| ACATCGTATTAGTCCCTGAT+GGG | - | chr1_3:12996992-12997011 | None:intergenic | 40.0% | |
| AACATCGTATTAGTCCCTGA+TGG | - | chr1_3:12996993-12997012 | None:intergenic | 40.0% | |
| !!! | TCTGCTTGTTTTGTTGCGAA+TGG | + | chr1_3:12997529-12997548 | Msa0104820:intron | 40.0% |
| ATGGTCAGATACAATCTGAG+TGG | - | chr1_3:12997582-12997601 | None:intergenic | 40.0% | |
| CATCGTATCCACCAATGAAT+CGG | + | chr1_3:12997599-12997618 | Msa0104820:intron | 40.0% | |
| GATATTACGTGTGGAGCATA+AGG | - | chr1_3:12997666-12997685 | None:intergenic | 40.0% | |
| !! | GAAGCACTGCGTAAAGAAAT+TGG | + | chr1_3:12998333-12998352 | Msa0104820:CDS | 40.0% |
| TGTGATGGTCAATGTGAAGA+AGG | + | chr1_3:12998362-12998381 | Msa0104820:CDS | 40.0% | |
| GCTAGAGTAAGCTTCTTCTT+TGG | + | chr1_3:12998426-12998445 | Msa0104820:CDS | 40.0% | |
| ! | CTTCTTCTTTGGGAACTTGT+TGG | + | chr1_3:12998437-12998456 | Msa0104820:CDS | 40.0% |
| !! | TCTTTGGGAACTTGTTGGAA+AGG | + | chr1_3:12998442-12998461 | Msa0104820:CDS | 40.0% |
| AAGTTGTTGTGTGTCAAGCT+TGG | + | chr1_3:12998564-12998583 | Msa0104820:three_prime_UTR | 40.0% | |
| !! | AACATTTGGGTTGGGGCATT+TGG | - | chr1_3:12988834-12988853 | None:intergenic | 45.0% |
| CATCCTCCAAAGTTTGGCTA+AGG | - | chr1_3:12988962-12988981 | None:intergenic | 45.0% | |
| !! | GGAGGAGTGCTAAATACTAC+AGG | - | chr1_3:12989368-12989387 | None:intergenic | 45.0% |
| AGATAATACCACCAGGCCAT+CGG | - | chr1_3:12989616-12989635 | None:intergenic | 45.0% | |
| GTGCCTAAGAACATCTCCAA+TGG | + | chr1_3:12990047-12990066 | Msa0104820:intron | 45.0% | |
| AAGGAGACTATATCGTCTGG+AGG | - | chr1_3:12990403-12990422 | None:intergenic | 45.0% | |
| AGCAAGGAGACTATATCGTC+TGG | - | chr1_3:12990406-12990425 | None:intergenic | 45.0% | |
| ATGACATGTTGTGCTACCTG+TGG | + | chr1_3:12990820-12990839 | Msa0104820:intron | 45.0% | |
| CTACCTGTGGAAAACTCCAA+TGG | + | chr1_3:12990833-12990852 | Msa0104820:intron | 45.0% | |
| GGCGATTTGATGAACAAGTG+GGG | + | chr1_3:12990854-12990873 | Msa0104820:intron | 45.0% | |
| ! | GATACCTCCTCTTTGGTGTA+TGG | + | chr1_3:12991194-12991213 | Msa0104820:intron | 45.0% |
| ! | TACCTCCTCTTTGGTGTATG+GGG | + | chr1_3:12991196-12991215 | Msa0104820:intron | 45.0% |
| !! | AATGAAGAAGGTGGTAGTGG+TGG | - | chr1_3:12991360-12991379 | None:intergenic | 45.0% |
| TTGCGGTGGATCAATGAAGA+AGG | - | chr1_3:12991372-12991391 | None:intergenic | 45.0% | |
| ! | TGTAAGCTAGGATTTTGCGG+TGG | - | chr1_3:12991386-12991405 | None:intergenic | 45.0% |
| CCGCAAAATCCTAGCTTACA+TGG | + | chr1_3:12991386-12991405 | Msa0104820:intron | 45.0% | |
| CATAGCGCAATGTCTCTATC+CGG | + | chr1_3:12991448-12991467 | Msa0104820:intron | 45.0% | |
| GATGAAGGAACAATCTGCAC+CGG | - | chr1_3:12991470-12991489 | None:intergenic | 45.0% | |
| GTCGTCACCGATAGATGAAA+TGG | + | chr1_3:12991490-12991509 | Msa0104820:intron | 45.0% | |
| GTGCATGTTTGGCATCATTG+TGG | + | chr1_3:12991799-12991818 | Msa0104820:intron | 45.0% | |
| ! | GCAAATGCCACTTGCATGTT+TGG | + | chr1_3:12991863-12991882 | Msa0104820:intron | 45.0% |
| CACGATACCAAACATGCAAG+TGG | - | chr1_3:12991873-12991892 | None:intergenic | 45.0% | |
| CACTTGCATGTTTGGTATCG+TGG | + | chr1_3:12991871-12991890 | Msa0104820:intron | 45.0% | |
| TTGCATGTTTGGTATCGTGG+TGG | + | chr1_3:12991874-12991893 | Msa0104820:intron | 45.0% | |
| GCAAATGTGTGGTATCGTGA+TGG | - | chr1_3:12991987-12992006 | None:intergenic | 45.0% | |
| TACTACTTGTGTACACCCTC+CGG | - | chr1_3:12992181-12992200 | None:intergenic | 45.0% | |
| CATCGGCCTTTCCCTTAAAA+CGG | + | chr1_3:12992309-12992328 | Msa0104820:intron | 45.0% | |
| CGGTCTTCCCTTCTGTTATT+AGG | + | chr1_3:12992570-12992589 | Msa0104820:intron | 45.0% | |
| GAGGCAGGTTGCAATTAAGA+AGG | - | chr1_3:12992602-12992621 | None:intergenic | 45.0% | |
| AATACATGGTCAGCTGGTGA+GGG | - | chr1_3:12992799-12992818 | None:intergenic | 45.0% | |
| AAATACATGGTCAGCTGGTG+AGG | - | chr1_3:12992800-12992819 | None:intergenic | 45.0% | |
| TCACCAGCTGACCATGTATT+TGG | + | chr1_3:12992799-12992818 | Msa0104820:intron | 45.0% | |
| GATGCACGATTACTAGATGC+AGG | - | chr1_3:12992829-12992848 | None:intergenic | 45.0% | |
| ATAAAGGGTCACCCAAATGC+AGG | - | chr1_3:12992890-12992909 | None:intergenic | 45.0% | |
| CATTTGGGTGACCCTTTATC+TGG | + | chr1_3:12992891-12992910 | Msa0104820:intron | 45.0% | |
| AAAGGATCGTTCTCCACTGA+AGG | - | chr1_3:12992996-12993015 | None:intergenic | 45.0% | |
| !! | ATCCTTTGAAGTGCCAACAG+TGG | + | chr1_3:12993009-12993028 | Msa0104820:intron | 45.0% |
| GACTAGTGAAATGAGCAGAG+AGG | + | chr1_3:12993061-12993080 | Msa0104820:intron | 45.0% | |
| ! | AATGAGCAGAGAGGCATAGA+CGG | + | chr1_3:12993070-12993089 | Msa0104820:intron | 45.0% |
| AAGCAAACACTGTCACTGTC+GGG | - | chr1_3:12993296-12993315 | None:intergenic | 45.0% | |
| CAAGCAAACACTGTCACTGT+CGG | - | chr1_3:12993297-12993316 | None:intergenic | 45.0% | |
| ! | AGGAGTATAACCGCAACCAA+AGG | - | chr1_3:12993448-12993467 | None:intergenic | 45.0% |
| GCAACAGAATCAATCCTCCA+AGG | + | chr1_3:12993788-12993807 | Msa0104820:CDS | 45.0% | |
| AAGTTAACAGGGAACCTTGG+AGG | - | chr1_3:12993805-12993824 | None:intergenic | 45.0% | |
| GTCATCAGTTCAATCCCTAG+TGG | + | chr1_3:12994117-12994136 | Msa0104820:intron | 45.0% | |
| !! | TCAATCCCTAGTGGTGTCAT+AGG | + | chr1_3:12994126-12994145 | Msa0104820:intron | 45.0% |
| GTGTAACCTATGACACCACT+AGG | - | chr1_3:12994135-12994154 | None:intergenic | 45.0% | |
| TCTAATTCGCAGGGTCTCTA+TGG | + | chr1_3:12994230-12994249 | Msa0104820:intron | 45.0% | |
| CAAGTGACGTAAAACTCCAG+TGG | - | chr1_3:12994377-12994396 | None:intergenic | 45.0% | |
| TTTACGTCACTTGTGTCCTG+TGG | + | chr1_3:12994384-12994403 | Msa0104820:intron | 45.0% | |
| ACTTGGGGTAGCCTAATGTT+TGG | - | chr1_3:12994689-12994708 | None:intergenic | 45.0% | |
| AAACATTAGGCTACCCCAAG+TGG | + | chr1_3:12994688-12994707 | Msa0104820:intron | 45.0% | |
| !! | CTAATGATGATGGCCACTTG+GGG | - | chr1_3:12994704-12994723 | None:intergenic | 45.0% |
| CAATAAACCCGGAATTCTGC+TGG | + | chr1_3:12994812-12994831 | Msa0104820:CDS | 45.0% | |
| TGTTGTAGGCAAGGTTTGCA+TGG | - | chr1_3:12995051-12995070 | None:intergenic | 45.0% | |
| TTTCATGTCACGGATCAGCA+AGG | + | chr1_3:12995152-12995171 | Msa0104820:CDS | 45.0% | |
| ACACATTCAAAAGGGGAGAC+GGG | - | chr1_3:12995399-12995418 | None:intergenic | 45.0% | |
| ATAGCAGGGTAGATACTAGC+AGG | - | chr1_3:12995517-12995536 | None:intergenic | 45.0% | |
| TGAAGAGTTGGGAAGGCAAA+CGG | + | chr1_3:12995679-12995698 | Msa0104820:CDS | 45.0% | |
| CATACAGCCATTGAGCTCAT+TGG | + | chr1_3:12995726-12995745 | Msa0104820:CDS | 45.0% | |
| TGATGCAACAAACCAAGCTG+TGG | + | chr1_3:12995869-12995888 | Msa0104820:CDS | 45.0% | |
| AGGATGATGAGAATGTGTCC+AGG | + | chr1_3:12995955-12995974 | Msa0104820:CDS | 45.0% | |
| ! | GATAGGGATTATGAGAGTGC+TGG | + | chr1_3:12996044-12996063 | Msa0104820:CDS | 45.0% |
| TTGATTCTCCTCCCTCTTTC+AGG | + | chr1_3:12996090-12996109 | Msa0104820:CDS | 45.0% | |
| TGAGGAAAAAGGCTACTCAG+TGG | + | chr1_3:12996136-12996155 | Msa0104820:CDS | 45.0% | |
| TGTCTGCACTCTTACTGACA+TGG | + | chr1_3:12996202-12996221 | Msa0104820:CDS | 45.0% | |
| ATGCCTCCATCTCATCTGAA+GGG | + | chr1_3:12996240-12996259 | Msa0104820:CDS | 45.0% | |
| ATAAGGCCCTTCAGATGAGA+TGG | - | chr1_3:12996249-12996268 | None:intergenic | 45.0% | |
| GATGCACACTTGACACTGAA+GGG | + | chr1_3:12997168-12997187 | Msa0104820:CDS | 45.0% | |
| ATGCACACTTGACACTGAAG+GGG | + | chr1_3:12997169-12997188 | Msa0104820:CDS | 45.0% | |
| ACACTGAAGGGGAGAAAGAA+AGG | + | chr1_3:12997180-12997199 | Msa0104820:CDS | 45.0% | |
| CACTGAAGGGGAGAAAGAAA+GGG | + | chr1_3:12997181-12997200 | Msa0104820:CDS | 45.0% | |
| CAAAACAAGCAGATAGCTGC+AGG | - | chr1_3:12997522-12997541 | None:intergenic | 45.0% | |
| ! | CGATTCATTGGTGGATACGA+TGG | - | chr1_3:12997601-12997620 | None:intergenic | 45.0% |
| ATCCACCAATGAATCGGTGA+CGG | + | chr1_3:12997605-12997624 | Msa0104820:intron | 45.0% | |
| !! | ATCAACCGTCACCGATTCAT+TGG | - | chr1_3:12997613-12997632 | None:intergenic | 45.0% |
| ! | AATGAATCGGTGACGGTTGA+TGG | + | chr1_3:12997612-12997631 | Msa0104820:intron | 45.0% |
| TGTCGTTACCATTGATCCTC+TGG | + | chr1_3:12998117-12998136 | Msa0104820:intron | 45.0% | |
| GTCGTTACCATTGATCCTCT+GGG | + | chr1_3:12998118-12998137 | Msa0104820:intron | 45.0% | |
| AGCTTAACAGTTTGTAGGGC+AGG | + | chr1_3:12998228-12998247 | Msa0104820:CDS | 45.0% | |
| GTGTCAACCATAGGAGAGAA+AGG | + | chr1_3:12998252-12998271 | Msa0104820:CDS | 45.0% | |
| AGATGCATATGGAAACCCTG+TGG | + | chr1_3:12998296-12998315 | Msa0104820:CDS | 45.0% | |
| AGAAATTGGCCAGACTGTGA+TGG | + | chr1_3:12998347-12998366 | Msa0104820:CDS | 45.0% | |
| TCACATTGACCATCACAGTC+TGG | - | chr1_3:12998359-12998378 | None:intergenic | 45.0% | |
| CAAGCAACCGGAATCAGAAT+AGG | - | chr1_3:12998503-12998522 | None:intergenic | 45.0% | |
| !! | TCAAATATAATATAATTATT+AGG | - | chr1_3:12991740-12991759 | None:intergenic | 5.0% |
| TATTATCTCCGATGGCCTGG+TGG | + | chr1_3:12989605-12989624 | Msa0104820:intron | 50.0% | |
| ! | TCGCCATTGGAGTTTTCCAC+AGG | - | chr1_3:12990839-12990858 | None:intergenic | 50.0% |
| TGAAGACGTGACTTCGATGG+AGG | - | chr1_3:12990915-12990934 | None:intergenic | 50.0% | |
| TTCCCCATACACCAAAGAGG+AGG | - | chr1_3:12991201-12991220 | None:intergenic | 50.0% | |
| CACTTCCCCATACACCAAAG+AGG | - | chr1_3:12991204-12991223 | None:intergenic | 50.0% | |
| !! | TACGGTGGTGGAGAGAAGAA+AGG | - | chr1_3:12991308-12991327 | None:intergenic | 50.0% |
| TATCCAACATGACGGTACGG+TGG | - | chr1_3:12991323-12991342 | None:intergenic | 50.0% | |
| CGGTGGATCAATGAAGAAGG+TGG | - | chr1_3:12991369-12991388 | None:intergenic | 50.0% | |
| CGGATAGAGACATTGCGCTA+TGG | - | chr1_3:12991450-12991469 | None:intergenic | 50.0% | |
| TCTATCGGTGACGACGATGA+AGG | - | chr1_3:12991485-12991504 | None:intergenic | 50.0% | |
| TGGCATCATTGTGGGTCAAG+TGG | + | chr1_3:12991808-12991827 | Msa0104820:intron | 50.0% | |
| GACTCAATGTTGTGGGCATG+CGG | - | chr1_3:12992630-12992649 | None:intergenic | 50.0% | |
| GATGCAGGGTTACCAATTGC+AGG | - | chr1_3:12992860-12992879 | None:intergenic | 50.0% | |
| TGCCACTGTTGGCACTTCAA+AGG | - | chr1_3:12993014-12993033 | None:intergenic | 50.0% | |
| AAGTGCCAACAGTGGCAACT+AGG | + | chr1_3:12993017-12993036 | Msa0104820:intron | 50.0% | |
| AGTGCCAACAGTGGCAACTA+GGG | + | chr1_3:12993018-12993037 | Msa0104820:intron | 50.0% | |
| GACGAGAGAAGGTGGTTGAA+TGG | + | chr1_3:12993720-12993739 | Msa0104820:exon | 50.0% | |
| GGGAAGTTAACAGGGAACCT+TGG | - | chr1_3:12993808-12993827 | None:intergenic | 50.0% | |
| TCTGAAGGAAACCTAGCCAC+TGG | + | chr1_3:12994358-12994377 | Msa0104820:intron | 50.0% | |
| GACGTAAAACTCCAGTGGCT+AGG | - | chr1_3:12994372-12994391 | None:intergenic | 50.0% | |
| ACGACTTCCAGCAGAATTCC+GGG | - | chr1_3:12994822-12994841 | None:intergenic | 50.0% | |
| CACGACTTCCAGCAGAATTC+CGG | - | chr1_3:12994823-12994842 | None:intergenic | 50.0% | |
| CCCAACTCTTCACACCTTCT+GGG | - | chr1_3:12995671-12995690 | None:intergenic | 50.0% | |
| ! | CCCAGAAGGTGTGAAGAGTT+GGG | + | chr1_3:12995668-12995687 | Msa0104820:CDS | 50.0% |
| TCCCAACTCTTCACACCTTC+TGG | - | chr1_3:12995672-12995691 | None:intergenic | 50.0% | |
| ! | GAAGGTGTGAAGAGTTGGGA+AGG | + | chr1_3:12995672-12995691 | Msa0104820:CDS | 50.0% |
| GAAGAGTTGGGAAGGCAAAC+GGG | + | chr1_3:12995680-12995699 | Msa0104820:CDS | 50.0% | |
| CAGCCATTGAGCTCATTGGT+CGG | + | chr1_3:12995730-12995749 | Msa0104820:CDS | 50.0% | |
| AGCCATTGAGCTCATTGGTC+GGG | + | chr1_3:12995731-12995750 | Msa0104820:CDS | 50.0% | |
| TCTCAGACAAAAGACCTGGG+CGG | - | chr1_3:12995758-12995777 | None:intergenic | 50.0% | |
| ! | GTCTGAGATATCAGCTGTCC+TGG | + | chr1_3:12995770-12995789 | Msa0104820:CDS | 50.0% |
| CATTGAATTGGAAGCTCGCC+AGG | - | chr1_3:12995791-12995810 | None:intergenic | 50.0% | |
| AAGCTCAACCACATCCTTCG+TGG | + | chr1_3:12995927-12995946 | Msa0104820:CDS | 50.0% | |
| CATCATCCTCACATCCACGA+AGG | - | chr1_3:12995944-12995963 | None:intergenic | 50.0% | |
| TCCAGGACCAGTTTCTCCAT+GGG | + | chr1_3:12995972-12995991 | Msa0104820:CDS | 50.0% | |
| GGTGAAACCCATGGAGAAAC+TGG | - | chr1_3:12995982-12996001 | None:intergenic | 50.0% | |
| ATGGGTGAAGGTGAAACCCA+TGG | - | chr1_3:12995991-12996010 | None:intergenic | 50.0% | |
| GGGTTTCACCTTCACCCATA+TGG | + | chr1_3:12995992-12996011 | Msa0104820:CDS | 50.0% | |
| CCTTCTGTCCATATGGGTGA+AGG | - | chr1_3:12996003-12996022 | None:intergenic | 50.0% | |
| CCTTCACCCATATGGACAGA+AGG | + | chr1_3:12996000-12996019 | Msa0104820:CDS | 50.0% | |
| GTGGAGCCTTCTGTCCATAT+GGG | - | chr1_3:12996009-12996028 | None:intergenic | 50.0% | |
| !! | AGGGATTATGAGAGTGCTGG+TGG | + | chr1_3:12996047-12996066 | Msa0104820:CDS | 50.0% |
| ATATTGGGCCTGAAAGAGGG+AGG | - | chr1_3:12996101-12996120 | None:intergenic | 50.0% | |
| CATGCCTCCATCTCATCTGA+AGG | + | chr1_3:12996239-12996258 | Msa0104820:CDS | 50.0% | |
| ! | TGAAGGGCCTTATGCTTCAC+AGG | + | chr1_3:12996256-12996275 | Msa0104820:CDS | 50.0% |
| TAGTTCAGCTGGCCAAAGGA+AGG | + | chr1_3:12996471-12996490 | Msa0104820:intron | 50.0% | |
| TACTTCATCAGGCACGTGGA+TGG | + | chr1_3:12997146-12997165 | Msa0104820:CDS | 50.0% | |
| GGATGCACACTTGACACTGA+AGG | + | chr1_3:12997167-12997186 | Msa0104820:CDS | 50.0% | |
| !! | AACCGTCACCGATTCATTGG+TGG | - | chr1_3:12997610-12997629 | None:intergenic | 50.0% |
| ACCATTGATCCTCTGGGTGA+TGG | + | chr1_3:12998124-12998143 | Msa0104820:intron | 50.0% | |
| TCCATCACCCAGAGGATCAA+TGG | - | chr1_3:12998128-12998147 | None:intergenic | 50.0% | |
| TATCCTTTGCGCACAGCTCA+AGG | - | chr1_3:12998164-12998183 | None:intergenic | 50.0% | |
| CTGTGCGCAAAGGATAGAGT+GGG | + | chr1_3:12998168-12998187 | Msa0104820:CDS | 50.0% | |
| !! | GCTTGCTGTCTGAAGTGACT+AGG | + | chr1_3:12998190-12998209 | Msa0104820:CDS | 50.0% |
| !! | CGTTTCTGGTGCTTTGGTGT+TGG | - | chr1_3:12998394-12998413 | None:intergenic | 50.0% |
| !! | TCGAGACGTTTCTGGTGCTT+TGG | - | chr1_3:12998400-12998419 | None:intergenic | 50.0% |
| ! | AAAGCACCAGAAACGTCTCG+AGG | + | chr1_3:12998399-12998418 | Msa0104820:CDS | 50.0% |
| ACCAGAAACGTCTCGAGGAT+GGG | + | chr1_3:12998404-12998423 | Msa0104820:CDS | 50.0% | |
| GCTTGGACAGTGCTTGAACT+TGG | + | chr1_3:12998581-12998600 | Msa0104820:three_prime_UTR | 50.0% | |
| ! | TGGGTTGGGGCATTTGGCAA+TGG | - | chr1_3:12988828-12988847 | None:intergenic | 55.0% |
| !! | GTTGGTGATGGGATGTGCGT+GGG | - | chr1_3:12991040-12991059 | None:intergenic | 55.0% |
| !! | TGTTGGTGATGGGATGTGCG+TGG | - | chr1_3:12991041-12991060 | None:intergenic | 55.0% |
| !! | GAAGAAGGTGGTAGTGGTGG+TGG | - | chr1_3:12991357-12991376 | None:intergenic | 55.0% |
| TTGTGGGCATGCGGTTAACG+AGG | - | chr1_3:12992621-12992640 | None:intergenic | 55.0% | |
| GTGCCAACAGTGGCAACTAG+GGG | + | chr1_3:12993019-12993038 | Msa0104820:intron | 55.0% | |
| TAGCCCCTAGTTGCCACTGT+TGG | - | chr1_3:12993025-12993044 | None:intergenic | 55.0% | |
| ! | CTTTTACGCAGCGCAGCTTC+AGG | + | chr1_3:12993336-12993355 | Msa0104820:intron | 55.0% |
| AGACGGGCGTAGTGCTTAAC+TGG | - | chr1_3:12995383-12995402 | None:intergenic | 55.0% | |
| !! | TAGGCTCTAGGACCAAAGGG+CGG | + | chr1_3:12995639-12995658 | Msa0104820:intron | 55.0% |
| ! | GCCCAGAAGGTGTGAAGAGT+TGG | + | chr1_3:12995667-12995686 | Msa0104820:CDS | 55.0% |
| AGTTGGGAAGGCAAACGGGT+TGG | + | chr1_3:12995684-12995703 | Msa0104820:CDS | 55.0% | |
| !! | CGGGTTGGCATTCACTCCAT+TGG | + | chr1_3:12995699-12995718 | Msa0104820:CDS | 55.0% |
| GTCCCGACCAATGAGCTCAA+TGG | - | chr1_3:12995736-12995755 | None:intergenic | 55.0% | |
| CCTCACATCCACGAAGGATG+TGG | - | chr1_3:12995938-12995957 | None:intergenic | 55.0% | |
| CCACATCCTTCGTGGATGTG+AGG | + | chr1_3:12995935-12995954 | Msa0104820:CDS | 55.0% | |
| GTCCAGGACCAGTTTCTCCA+TGG | + | chr1_3:12995971-12995990 | Msa0104820:CDS | 55.0% | |
| ACCCATGGAGAAACTGGTCC+TGG | - | chr1_3:12995976-12995995 | None:intergenic | 55.0% | |
| GGTGGAGCCTTCTGTCCATA+TGG | - | chr1_3:12996010-12996029 | None:intergenic | 55.0% | |
| AGGCCCTTCAGATGAGATGG+AGG | - | chr1_3:12996246-12996265 | None:intergenic | 55.0% | |
| ! | GGAGTACTTCATCAGGCACG+TGG | + | chr1_3:12997142-12997161 | Msa0104820:intron | 55.0% |
| !! | ATCCTCTGGGTGATGGACAC+AGG | + | chr1_3:12998131-12998150 | Msa0104820:intron | 55.0% |
| !! | TCCTCTGGGTGATGGACACA+GGG | + | chr1_3:12998132-12998151 | Msa0104820:intron | 55.0% |
| GCTGTGCGCAAAGGATAGAG+TGG | + | chr1_3:12998167-12998186 | Msa0104820:CDS | 55.0% | |
| AGGGCAGGTGTGTCAACCAT+AGG | + | chr1_3:12998243-12998262 | Msa0104820:CDS | 55.0% | |
| !! | TCTGGTGCTTTGGTGTTGGC+TGG | - | chr1_3:12998390-12998409 | None:intergenic | 55.0% |
| CACCAGAAACGTCTCGAGGA+TGG | + | chr1_3:12998403-12998422 | Msa0104820:CDS | 55.0% | |
| CTTCGATGGAGGTCCCTGCT+TGG | - | chr1_3:12990904-12990923 | None:intergenic | 60.0% | |
| CCAACATGACGGTACGGTGG+TGG | - | chr1_3:12991320-12991339 | None:intergenic | 60.0% | |
| CCACCACCGTACCGTCATGT+TGG | + | chr1_3:12991317-12991336 | Msa0104820:intron | 60.0% | |
| !! | GAAGGTGGTAGTGGTGGTGG+TGG | - | chr1_3:12991354-12991373 | None:intergenic | 60.0% |
| CAGTGGCAACTAGGGGCTAG+CGG | + | chr1_3:12993026-12993045 | Msa0104820:intron | 60.0% | |
| ! | GGGCTAGCGGCGCAAACAAA+AGG | + | chr1_3:12993039-12993058 | Msa0104820:intron | 60.0% |
| ACCCTGTGTCCATCACCCAG+AGG | - | chr1_3:12998136-12998155 | None:intergenic | 60.0% | |
| GAGCCTTGAGCTGTGCGCAA+AGG | + | chr1_3:12998158-12998177 | Msa0104820:CDS | 60.0% | |
| GCCCATCCTCGAGACGTTTC+TGG | - | chr1_3:12998408-12998427 | None:intergenic | 60.0% | |
| !! | GGTGGTAGTGGTGGTGGTGG+TGG | - | chr1_3:12991351-12991370 | None:intergenic | 65.0% |
| !! | CAGAAGGGAAGACCGGCTCG+TGG | - | chr1_3:12992565-12992584 | None:intergenic | 65.0% |
| GGGCATGCGGTTAACGAGGC+AGG | - | chr1_3:12992617-12992636 | None:intergenic | 65.0% | |
| TCTGGGCTCTTGCCGCCCTT+TGG | - | chr1_3:12995654-12995673 | None:intergenic | 65.0% | |
| AAGGGCGGCAAGAGCCCAGA+AGG | + | chr1_3:12995654-12995673 | Msa0104820:CDS | 65.0% | |
| CTCATTGGTCGGGACCGCCC+AGG | + | chr1_3:12995741-12995760 | Msa0104820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12988637 | 12998828 | 12988637 | ID=Msa0104820;Name=Msa0104820 |
| chr1_3 | mRNA | 12988637 | 12998828 | 12988637 | ID=Msa0104820-mRNA-1;Parent=Msa0104820;Name=Msa0104820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=436|1|1|1|0.85|0.75|8|352|454 |
| chr1_3 | exon | 12988637 | 12989033 | 12988637 | ID=Msa0104820-mRNA-1:exon:5081;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12993700 | 12993809 | 12993700 | ID=Msa0104820-mRNA-1:exon:5082;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12994242 | 12994287 | 12994242 | ID=Msa0104820-mRNA-1:exon:5083;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12994801 | 12994915 | 12994801 | ID=Msa0104820-mRNA-1:exon:5084;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12995150 | 12995217 | 12995150 | ID=Msa0104820-mRNA-1:exon:5085;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12995642 | 12996277 | 12995642 | ID=Msa0104820-mRNA-1:exon:5086;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12997143 | 12997247 | 12997143 | ID=Msa0104820-mRNA-1:exon:5087;Parent=Msa0104820-mRNA-1 |
| chr1_3 | exon | 12998153 | 12998828 | 12998153 | ID=Msa0104820-mRNA-1:exon:5088;Parent=Msa0104820-mRNA-1 |
| chr1_3 | five_prime_UTR | 12988637 | 12989033 | 12988637 | ID=Msa0104820-mRNA-1:five_prime_utr;Parent=Msa0104820-mRNA-1 |
| chr1_3 | five_prime_UTR | 12993700 | 12993738 | 12993700 | ID=Msa0104820-mRNA-1:five_prime_utr;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12993739 | 12993809 | 12993739 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12994242 | 12994287 | 12994242 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12994801 | 12994915 | 12994801 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12995150 | 12995217 | 12995150 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12995642 | 12996277 | 12995642 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12997143 | 12997247 | 12997143 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | CDS | 12998153 | 12998476 | 12998153 | ID=Msa0104820-mRNA-1:cds;Parent=Msa0104820-mRNA-1 |
| chr1_3 | three_prime_UTR | 12998477 | 12998828 | 12998477 | ID=Msa0104820-mRNA-1:three_prime_utr;Parent=Msa0104820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
