Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010550 | XP_003589311.1 | 89.756 | 205 | 5 | 1 | 1 | 189 | 1 | 205 | 4.71e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010550 | sp|P82278|RR9_SPIOL | 67.308 | 208 | 49 | 3 | 1 | 189 | 1 | 208 | 7.47e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010550 | Msa0051010 | 0.984667 | 3.119806e-161 | -8.615850e-47 |
| Msa0010550 | Msa0101280 | 0.969688 | 1.718405e-130 | -8.615850e-47 |
| Msa0010550 | Msa0375800 | 0.819861 | 9.298877e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010550 | MtrunA17_Chr1g0154431 | 89.756 | 205 | 5 | 1 | 1 | 189 | 1 | 205 | 4.33e-128 | 358 |
| Msa0010550 | MtrunA17_Chr3g0118021 | 43.750 | 112 | 54 | 4 | 82 | 189 | 299 | 405 | 1.53e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010550 | AT1G74970.1 | 66.505 | 206 | 49 | 2 | 4 | 189 | 3 | 208 | 6.59e-85 | 249 |
| Msa0010550 | AT3G49080.1 | 42.857 | 112 | 55 | 4 | 82 | 189 | 324 | 430 | 4.30e-14 | 70.1 |
Find 81 sgRNAs with CRISPR-Local
Find 541 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTATCTGTAAAATTTC+TGG | 0.180911 | 1_1:-15975146 | Msa0010550:three_prime_UTR |
| GGTTGGTTTGGAAGAGATTT+TGG | 0.195951 | 1_1:+15982366 | None:intergenic |
| TACAGTGAGAGAATGGAATT+TGG | 0.236598 | 1_1:+15982303 | None:intergenic |
| TACTATGTTGAAGGTTTCTT+TGG | 0.252502 | 1_1:-15975270 | Msa0010550:three_prime_UTR |
| GCGAGAGAGGGAGAAGGTTC+TGG | 0.263181 | 1_1:+15982330 | None:intergenic |
| TCCATACTGGCAAAATAATA+AGG | 0.283512 | 1_1:+15975336 | None:intergenic |
| TTCGTATCCCAAAGTTAATA+AGG | 0.290144 | 1_1:+15975712 | None:intergenic |
| GAGGAAATAACATATATTTC+AGG | 0.295972 | 1_1:+15975244 | None:intergenic |
| GAGAGAGAGAGTGGTTGGTT+TGG | 0.310741 | 1_1:+15982354 | None:intergenic |
| TTCACTGAGGCCTTTGTATT+CGG | 0.318413 | 1_1:-15975376 | Msa0010550:three_prime_UTR |
| AAACCTTCAACATAGTAAAA+AGG | 0.337469 | 1_1:+15975276 | None:intergenic |
| TTCCCTGTATCTCTGTAGTT+TGG | 0.342025 | 1_1:-15975432 | Msa0010550:three_prime_UTR |
| TAAGGTGCCCTTATTAACTT+TGG | 0.349914 | 1_1:-15975720 | Msa0010550:CDS |
| GCTGAGGGTGGTGGCCTCTC+TGG | 0.350070 | 1_1:-15975665 | Msa0010550:CDS |
| GCTATGGCTTCAATACATTA+AGG | 0.364577 | 1_1:-15975738 | Msa0010550:CDS |
| CTGGGGAGAGAGAGAGTGGT+TGG | 0.367992 | 1_1:+15982349 | None:intergenic |
| TCAGCGATTTCGGGTTCGGC+AGG | 0.386590 | 1_1:+15982259 | None:intergenic |
| TACGTTAAATCTAGACTTCC+TGG | 0.389969 | 1_1:-15982226 | Msa0010550:CDS |
| GGAAGATGTGAGAGATGATA+AGG | 0.391926 | 1_1:+15982411 | None:intergenic |
| GTTTCGGAACTATTGATTGT+AGG | 0.392267 | 1_1:-15975400 | Msa0010550:three_prime_UTR |
| GAGGTCAGCGATTTCGGGTT+CGG | 0.399549 | 1_1:+15982255 | None:intergenic |
| CGAGAGAGGGAGAAGGTTCT+GGG | 0.402856 | 1_1:+15982331 | None:intergenic |
| TAACCAAACTACAGAGATAC+AGG | 0.405060 | 1_1:+15975429 | None:intergenic |
| AGTTTGGTTACTTTCAGTTT+CGG | 0.405516 | 1_1:-15975416 | Msa0010550:three_prime_UTR |
| ACAGTGAGAGAATGGAATTT+GGG | 0.409706 | 1_1:+15982304 | None:intergenic |
| AGATACAGGGAAGAATAAAA+AGG | 0.410538 | 1_1:+15975443 | None:intergenic |
| TACATTTCCCAATTCCATAC+TGG | 0.423204 | 1_1:+15975323 | None:intergenic |
| TCGTATCCCAAAGTTAATAA+GGG | 0.423632 | 1_1:+15975713 | None:intergenic |
| ATCTGTAAAATTTCTGGAGA+TGG | 0.437955 | 1_1:-15975140 | Msa0010550:three_prime_UTR |
| AAGGTGCCCTTATTAACTTT+GGG | 0.444377 | 1_1:-15975719 | Msa0010550:CDS |
| AGCGATTTCGGGTTCGGCAG+GGG | 0.451024 | 1_1:+15982261 | None:intergenic |
| GGAATTTGGGAGAGCGAGAG+AGG | 0.451858 | 1_1:+15982317 | None:intergenic |
| TTGCAGTTACAGTGAGAGAA+TGG | 0.456873 | 1_1:+15982296 | None:intergenic |
| GGTTCTGGGGAGAGAGAGAG+TGG | 0.468084 | 1_1:+15982345 | None:intergenic |
| CTCAATATTCTAAACGTTGA+GGG | 0.468618 | 1_1:-15975490 | Msa0010550:exon |
| TGGCCTCTCTGGTCAAGCTC+AGG | 0.474396 | 1_1:-15975654 | Msa0010550:CDS |
| CAAAATAATAAGGAAACAAA+GGG | 0.488587 | 1_1:+15975346 | None:intergenic |
| GGAGAAGGAGAGTGAAGAGA+GGG | 0.500055 | 1_1:+15982390 | None:intergenic |
| GTTGTACAGGAATATCTTCA+AGG | 0.503982 | 1_1:-15975767 | Msa0010550:intron |
| GCAAAATAATAAGGAAACAA+AGG | 0.505814 | 1_1:+15975345 | None:intergenic |
| CAAGCTCAGGCGATCACCCT+TGG | 0.506389 | 1_1:-15975641 | Msa0010550:CDS |
| AGTATGGAATTGGGAAATGT+AGG | 0.512865 | 1_1:-15975321 | Msa0010550:three_prime_UTR |
| TACACACAATCAATTAAAAG+AGG | 0.518003 | 1_1:+15975225 | None:intergenic |
| CATTAATTACCGTGATGCTA+AGG | 0.519189 | 1_1:-15982113 | Msa0010550:intron |
| CCTCAACGTTTAGAATATTG+AGG | 0.522813 | 1_1:+15975491 | None:intergenic |
| CAGCGATTTCGGGTTCGGCA+GGG | 0.530065 | 1_1:+15982260 | None:intergenic |
| TTTGGGAATGCTACACACCT+TGG | 0.531838 | 1_1:+15975068 | None:intergenic |
| GAATTTGGGAGAGCGAGAGA+GGG | 0.540387 | 1_1:+15982318 | None:intergenic |
| AGGAGAAGGAGAGTGAAGAG+AGG | 0.540862 | 1_1:+15982389 | None:intergenic |
| GTTTGAGCAGCGAATCCACC+AGG | 0.551516 | 1_1:+15982208 | None:intergenic |
| TTCGCTGCTCAAACTATCAT+CGG | 0.553571 | 1_1:-15982199 | Msa0010550:intron |
| GGGAGAGCGAGAGAGGGAGA+AGG | 0.555061 | 1_1:+15982324 | None:intergenic |
| AGAAGCCCTTGTTGTCTCAA+AGG | 0.556232 | 1_1:+15975575 | None:intergenic |
| CCTCAATATTCTAAACGTTG+AGG | 0.561139 | 1_1:-15975491 | Msa0010550:exon |
| TATTGCTCGTGCGTTGCTGA+AGG | 0.576175 | 1_1:-15975618 | Msa0010550:CDS |
| ATTTCTGGAGATGGTTGTTG+TGG | 0.577273 | 1_1:-15975131 | Msa0010550:three_prime_UTR |
| GCTGTTGAGAGGAAGAAAGT+TGG | 0.577966 | 1_1:-15975536 | Msa0010550:CDS |
| ATCTTCAAGGAAATCCGCTA+TGG | 0.582748 | 1_1:-15975754 | Msa0010550:CDS |
| ATGAATAAACCTTAGCATCA+CGG | 0.583868 | 1_1:+15982104 | None:intergenic |
| TATAGTGTACACATGGTACA+AGG | 0.587250 | 1_1:+15975108 | None:intergenic |
| ATAATAAGGAAACAAAGGGC+AGG | 0.589334 | 1_1:+15975350 | None:intergenic |
| GTGTTTGTGAAAGCTGAGGG+TGG | 0.596769 | 1_1:-15975677 | Msa0010550:CDS |
| TTTGTGAAAGCTGAGGGTGG+TGG | 0.605348 | 1_1:-15975674 | Msa0010550:CDS |
| CATCTCAATACACTTGAACA+AGG | 0.613434 | 1_1:+15975193 | None:intergenic |
| GAGAGAGGGAGAAGGTTCTG+GGG | 0.622430 | 1_1:+15982332 | None:intergenic |
| GAGATTCTAGAGCTGTTGAG+AGG | 0.623504 | 1_1:-15975547 | Msa0010550:CDS |
| TGATGTGTTTGTGAAAGCTG+AGG | 0.626462 | 1_1:-15975681 | Msa0010550:CDS |
| AATATTCTAAACGTTGAGGG+TGG | 0.633829 | 1_1:-15975487 | Msa0010550:exon |
| AGAGTACCTTTGAGACAACA+AGG | 0.639079 | 1_1:-15975581 | Msa0010550:CDS |
| GATGTGTTTGTGAAAGCTGA+GGG | 0.645465 | 1_1:-15975680 | Msa0010550:CDS |
| GCAACGCACGAGCAATACCA+AGG | 0.649038 | 1_1:+15975624 | None:intergenic |
| TGCATGTTATAGTGTACACA+TGG | 0.660660 | 1_1:+15975101 | None:intergenic |
| GGGCAGGATTCCGAATACAA+AGG | 0.665424 | 1_1:+15975366 | None:intergenic |
| GCGTTGCTGAAGGTTAGTGA+AGG | 0.671877 | 1_1:-15975608 | Msa0010550:CDS |
| AACCAAACTACAGAGATACA+GGG | 0.685063 | 1_1:+15975430 | None:intergenic |
| GTTAAATCTAGACTTCCTGG+TGG | 0.707157 | 1_1:-15982223 | Msa0010550:CDS |
| ATTGATTGTAGGTTTCACTG+AGG | 0.707639 | 1_1:-15975389 | Msa0010550:three_prime_UTR |
| CAACGCACGAGCAATACCAA+GGG | 0.707901 | 1_1:+15975625 | None:intergenic |
| GAGTACCTTTGAGACAACAA+GGG | 0.708894 | 1_1:-15975580 | Msa0010550:CDS |
| TCGCCTGAGCTTGACCAGAG+AGG | 0.719687 | 1_1:+15975651 | None:intergenic |
| TTAATGTATTGAAGCCATAG+CGG | 0.725178 | 1_1:+15975740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATTTTGTAAATTTTTA+AGG | + | chr1_1:15979657-15979676 | None:intergenic | 10.0% |
| !! | TATCATTTAACATTATTGTA+AGG | - | chr1_1:15977941-15977960 | Msa0010550:intron | 15.0% |
| !! | TGAAAATATAACTTATAGTT+AGG | - | chr1_1:15979984-15980003 | Msa0010550:intron | 15.0% |
| !! | GAAAATATAACTTATAGTTA+GGG | - | chr1_1:15979985-15980004 | Msa0010550:intron | 15.0% |
| !! | TAGAATAAAAAGTGAAATAA+TGG | - | chr1_1:15980681-15980700 | Msa0010550:intron | 15.0% |
| !! | TTATTCATCCAAAAAATATA+AGG | - | chr1_1:15981360-15981379 | Msa0010550:intron | 15.0% |
| !! | ACGTTAAGAAAATTATAATG+TGG | - | chr1_1:15975491-15975510 | Msa0010550:exon | 20.0% |
| !! | AGAAAATTATAATGTGGTAT+TGG | - | chr1_1:15975497-15975516 | Msa0010550:CDS | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | + | chr1_1:15975933-15975952 | None:intergenic | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | + | chr1_1:15975934-15975953 | None:intergenic | 20.0% |
| !! | ATACAACATAGAAATGAAAT+AGG | - | chr1_1:15976470-15976489 | Msa0010550:intron | 20.0% |
| !! | AATAAAAACAACACATGTTT+GGG | - | chr1_1:15976613-15976632 | Msa0010550:intron | 20.0% |
| !! | AAGGAAAATCAAGAAAAATA+TGG | - | chr1_1:15976846-15976865 | Msa0010550:intron | 20.0% |
| !! | AGAAAATAAGGCAATTAAAA+TGG | - | chr1_1:15977066-15977085 | Msa0010550:intron | 20.0% |
| !!! | TAAGGTTTATCATTGTTATT+AGG | + | chr1_1:15977204-15977223 | None:intergenic | 20.0% |
| !! | TAACAGATGTATTGAATTTA+AGG | + | chr1_1:15977222-15977241 | None:intergenic | 20.0% |
| !! | TTTGATACATTGATATCTTA+TGG | - | chr1_1:15977329-15977348 | Msa0010550:intron | 20.0% |
| !!! | AAATTCTGGTTTTGATATAT+GGG | + | chr1_1:15977738-15977757 | None:intergenic | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | + | chr1_1:15975933-15975952 | None:intergenic | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | + | chr1_1:15975934-15975953 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATCTCAAA+TGG | - | chr1_1:15979443-15979462 | Msa0010550:intron | 20.0% |
| !!! | TATTGATTCAATTAAAGAGA+AGG | + | chr1_1:15979704-15979723 | None:intergenic | 20.0% |
| !!! | ATTTGAGTGATTTTTTGATT+TGG | + | chr1_1:15979879-15979898 | None:intergenic | 20.0% |
| !! | AGTATGATTCAAAAACTTAA+GGG | - | chr1_1:15979936-15979955 | Msa0010550:intron | 20.0% |
| !! | AGTAATATTAAAATTAGCTC+AGG | - | chr1_1:15980225-15980244 | Msa0010550:intron | 20.0% |
| !! | GTAATATTAAAATTAGCTCA+GGG | - | chr1_1:15980226-15980245 | Msa0010550:intron | 20.0% |
| !! | TAATATTAAAATTAGCTCAG+GGG | - | chr1_1:15980227-15980246 | Msa0010550:intron | 20.0% |
| !!! | TAGTCTTTTCATAGAATAAA+TGG | - | chr1_1:15980255-15980274 | Msa0010550:intron | 20.0% |
| !!! | AGTCTTTTCATAGAATAAAT+GGG | - | chr1_1:15980256-15980275 | Msa0010550:intron | 20.0% |
| !!! | AAATTTCATCTTTTATTCAG+TGG | + | chr1_1:15980318-15980337 | None:intergenic | 20.0% |
| !! | TTAAATTATGAAGAGTAACT+GGG | - | chr1_1:15980502-15980521 | Msa0010550:intron | 20.0% |
| !!! | TTGAAGATCCTTATATTTTT+TGG | + | chr1_1:15981371-15981390 | None:intergenic | 20.0% |
| !! | AAGAAATCAAAGAAAATGTT+TGG | + | chr1_1:15981618-15981637 | None:intergenic | 20.0% |
| !!! | TTTAGATTTTAATGTTGTAC+AGG | - | chr1_1:15981710-15981729 | Msa0010550:intron | 20.0% |
| !! | CAAAATAATAAGGAAACAAA+GGG | + | chr1_1:15982147-15982166 | None:intergenic | 20.0% |
| !! | TAGATTTAACGTATGTTTTG+AGG | + | chr1_1:15975257-15975276 | None:intergenic | 25.0% |
| !! | TATAATGTGGTATTGGATTT+AGG | - | chr1_1:15975504-15975523 | Msa0010550:CDS | 25.0% |
| !! | ATAATGTGGTATTGGATTTA+GGG | - | chr1_1:15975505-15975524 | Msa0010550:CDS | 25.0% |
| !!! | GTTGAGTTGAGTTTTTTTTA+CGG | - | chr1_1:15975622-15975641 | Msa0010550:CDS | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | - | chr1_1:15975802-15975821 | Msa0010550:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | - | chr1_1:15975809-15975828 | Msa0010550:intron | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | - | chr1_1:15975965-15975984 | Msa0010550:intron | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | + | chr1_1:15976020-15976039 | None:intergenic | 25.0% |
| !!! | GCTATTTTTTCCATATCAAA+AGG | + | chr1_1:15976202-15976221 | None:intergenic | 25.0% |
| ! | TTACTAAAGAGACTAGAATA+TGG | - | chr1_1:15976515-15976534 | Msa0010550:intron | 25.0% |
| !!! | ACATGTGTTGTTTTTATTGT+TGG | + | chr1_1:15976611-15976630 | None:intergenic | 25.0% |
| ! | CAATAAAAACAACACATGTT+TGG | - | chr1_1:15976612-15976631 | Msa0010550:intron | 25.0% |
| ! | CATATTGTGCATTCATAATA+TGG | + | chr1_1:15977482-15977501 | None:intergenic | 25.0% |
| !!! | CAAATTCTGGTTTTGATATA+TGG | + | chr1_1:15977739-15977758 | None:intergenic | 25.0% |
| ! | TATATCAAAACCAGAATTTG+TGG | - | chr1_1:15977739-15977758 | Msa0010550:intron | 25.0% |
| !!! | AATTTTTGACTGCTATAAAG+GGG | + | chr1_1:15977791-15977810 | None:intergenic | 25.0% |
| !!! | CAATTTTTGACTGCTATAAA+GGG | + | chr1_1:15977792-15977811 | None:intergenic | 25.0% |
| !!! | TCAATTTTTGACTGCTATAA+AGG | + | chr1_1:15977793-15977812 | None:intergenic | 25.0% |
| ! | TGAGATTTCCAAATTTCATT+TGG | + | chr1_1:15977914-15977933 | None:intergenic | 25.0% |
| !!! | CATACTTTCGTTTTATTGTT+TGG | + | chr1_1:15978082-15978101 | None:intergenic | 25.0% |
| ! | CAAACAATAAAACGAAAGTA+TGG | - | chr1_1:15978080-15978099 | Msa0010550:intron | 25.0% |
| ! | TTTGGAAATTTAAACCTGAA+TGG | + | chr1_1:15978749-15978768 | None:intergenic | 25.0% |
| !! | ATTCAGGTTTAAATTTCCAA+AGG | - | chr1_1:15978748-15978767 | Msa0010550:intron | 25.0% |
| ! | ATTGTGAAATTGATGCTTAT+TGG | + | chr1_1:15978935-15978954 | None:intergenic | 25.0% |
| !!! | CAATTTTGAGATCATTACAT+TGG | + | chr1_1:15979020-15979039 | None:intergenic | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | - | chr1_1:15975802-15975821 | Msa0010550:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | - | chr1_1:15975809-15975828 | Msa0010550:intron | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | - | chr1_1:15975965-15975984 | Msa0010550:intron | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | + | chr1_1:15976020-15976039 | None:intergenic | 25.0% |
| ! | TATATTTGGATCATAACAGA+TGG | - | chr1_1:15979369-15979388 | Msa0010550:intron | 25.0% |
| ! | TATTTCAAAAGGGTTTGATT+AGG | - | chr1_1:15979830-15979849 | Msa0010550:intron | 25.0% |
| ! | CAGTATGATTCAAAAACTTA+AGG | - | chr1_1:15979935-15979954 | Msa0010550:intron | 25.0% |
| ! | TTCAAAAACTTAAGGGAAAA+AGG | - | chr1_1:15979943-15979962 | Msa0010550:intron | 25.0% |
| ! | TAACTTATAGTTAGGGTTTA+TGG | - | chr1_1:15979992-15980011 | Msa0010550:intron | 25.0% |
| ! | AAAGAAAAACAAAATGAGAG+AGG | - | chr1_1:15980170-15980189 | Msa0010550:intron | 25.0% |
| ! | AAGAAAAACAAAATGAGAGA+GGG | - | chr1_1:15980171-15980190 | Msa0010550:intron | 25.0% |
| !! | TTTTCATAGAATAAATGGGT+AGG | - | chr1_1:15980260-15980279 | Msa0010550:intron | 25.0% |
| ! | GTTAAATTATGAAGAGTAAC+TGG | - | chr1_1:15980501-15980520 | Msa0010550:intron | 25.0% |
| ! | TGATCTTCCAAAAAAACATA+AGG | - | chr1_1:15980564-15980583 | Msa0010550:intron | 25.0% |
| ! | ATGACAATCTAATGAAATAC+AGG | + | chr1_1:15980826-15980845 | None:intergenic | 25.0% |
| ! | TGATCATCCAAAAAAACATA+AGG | - | chr1_1:15980982-15981001 | Msa0010550:intron | 25.0% |
| !! | ACACTTATAATCTAAAGTCT+CGG | + | chr1_1:15981146-15981165 | None:intergenic | 25.0% |
| ! | GCAAAATAATAAGGAAACAA+AGG | + | chr1_1:15982148-15982167 | None:intergenic | 25.0% |
| !! | CATAGTAAAAAGGTGTATTT+GGG | + | chr1_1:15982207-15982226 | None:intergenic | 25.0% |
| !! | ACATAGTAAAAAGGTGTATT+TGG | + | chr1_1:15982208-15982227 | None:intergenic | 25.0% |
| ! | AAACCTTCAACATAGTAAAA+AGG | + | chr1_1:15982217-15982236 | None:intergenic | 25.0% |
| ! | GAGGAAATAACATATATTTC+AGG | + | chr1_1:15982249-15982268 | None:intergenic | 25.0% |
| ! | TACACACAATCAATTAAAAG+AGG | + | chr1_1:15982268-15982287 | None:intergenic | 25.0% |
| ! | TCAACTATCTGTAAAATTTC+TGG | - | chr1_1:15982344-15982363 | Msa0010550:CDS | 25.0% |
| ATGAATAAACCTTAGCATCA+CGG | + | chr1_1:15975389-15975408 | None:intergenic | 30.0% | |
| GTGAATAAGTTAATGCTGAA+AGG | - | chr1_1:15975558-15975577 | Msa0010550:CDS | 30.0% | |
| !!! | TGCTGAAAGGTTTTGTTAAT+TGG | - | chr1_1:15975571-15975590 | Msa0010550:CDS | 30.0% |
| !!! | AGTTGAGTTTTTTTTACGGA+TGG | - | chr1_1:15975626-15975645 | Msa0010550:CDS | 30.0% |
| TTAGAAAGGAATAAAAGCAG+TGG | - | chr1_1:15975655-15975674 | Msa0010550:CDS | 30.0% | |
| TCACTTGATCCAACAATTAA+GGG | + | chr1_1:15975977-15975996 | None:intergenic | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | + | chr1_1:15976007-15976026 | None:intergenic | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | + | chr1_1:15976008-15976027 | None:intergenic | 30.0% | |
| TTGATTCCACTTTAATGACT+TGG | - | chr1_1:15976024-15976043 | Msa0010550:intron | 30.0% | |
| !! | AGGACAAGGTTGATTTTAAT+GGG | + | chr1_1:15976083-15976102 | None:intergenic | 30.0% |
| GATATGGAAAAAATAGCCAA+CGG | - | chr1_1:15976205-15976224 | Msa0010550:intron | 30.0% | |
| ATGTTAGAAGTGAAACATTG+CGG | - | chr1_1:15976245-15976264 | Msa0010550:intron | 30.0% | |
| TGTATTGCAAAGAATGCTTA+TGG | + | chr1_1:15976455-15976474 | None:intergenic | 30.0% | |
| CAACATAGAAATGAAATAGG+TGG | - | chr1_1:15976473-15976492 | Msa0010550:intron | 30.0% | |
| TATGTTGAAGTGAATTGGTT+TGG | + | chr1_1:15976572-15976591 | None:intergenic | 30.0% | |
| ATGGTTATGTTGAAGTGAAT+TGG | + | chr1_1:15976577-15976596 | None:intergenic | 30.0% | |
| !!! | TGTGTTGTTTTTATTGTTGG+TGG | + | chr1_1:15976608-15976627 | None:intergenic | 30.0% |
| TGGGCATTAAAGAAGAAAAT+TGG | - | chr1_1:15976632-15976651 | Msa0010550:intron | 30.0% | |
| !!! | TGTTATTTTGGATGAGACTA+CGG | + | chr1_1:15976703-15976722 | None:intergenic | 30.0% |
| TTCATAATTCCCTTATCAGA+AGG | - | chr1_1:15976827-15976846 | Msa0010550:intron | 30.0% | |
| ! | CTTGATTTTCCTTCTGATAA+GGG | + | chr1_1:15976839-15976858 | None:intergenic | 30.0% |
| ! | TCTTGATTTTCCTTCTGATA+AGG | + | chr1_1:15976840-15976859 | None:intergenic | 30.0% |
| ! | GATTAATGAGGCGTTTAATT+GGG | + | chr1_1:15976918-15976937 | None:intergenic | 30.0% |
| ! | GTTTATAATGCTTTTGTCCT+GGG | + | chr1_1:15976959-15976978 | None:intergenic | 30.0% |
| ! | AGTTTATAATGCTTTTGTCC+TGG | + | chr1_1:15976960-15976979 | None:intergenic | 30.0% |
| TCTATGATATTTGCACTTGT+GGG | + | chr1_1:15976986-15977005 | None:intergenic | 30.0% | |
| ATCTATGATATTTGCACTTG+TGG | + | chr1_1:15976987-15977006 | None:intergenic | 30.0% | |
| AGAGGTGAATGAAGAAAATA+AGG | - | chr1_1:15977054-15977073 | Msa0010550:intron | 30.0% | |
| AACTTATGTCTTGGAATTCA+TGG | + | chr1_1:15977283-15977302 | None:intergenic | 30.0% | |
| TCTATTCTCAACTTATGTCT+TGG | + | chr1_1:15977292-15977311 | None:intergenic | 30.0% | |
| ! | AAGACATAAGTTGAGAATAG+AGG | - | chr1_1:15977291-15977310 | Msa0010550:intron | 30.0% |
| !! | CAAATTCTCTGAAACATCAA+AGG | + | chr1_1:15977356-15977375 | None:intergenic | 30.0% |
| AGATGTTTCAATTCAAGAGT+TGG | + | chr1_1:15977395-15977414 | None:intergenic | 30.0% | |
| CCACTATACTCTGTTATAAT+TGG | + | chr1_1:15977418-15977437 | None:intergenic | 30.0% | |
| CCAATTATAACAGAGTATAG+TGG | - | chr1_1:15977415-15977434 | Msa0010550:intron | 30.0% | |
| !! | AAGAATTATTGTTGGTGGTA+AGG | + | chr1_1:15977593-15977612 | None:intergenic | 30.0% |
| GTGTTAAGAATTATTGTTGG+TGG | + | chr1_1:15977598-15977617 | None:intergenic | 30.0% | |
| ! | TACGAATTTAGCTTATGCTT+GGG | + | chr1_1:15977668-15977687 | None:intergenic | 30.0% |
| GTACAAGTATTACAGTGTAT+GGG | + | chr1_1:15977856-15977875 | None:intergenic | 30.0% | |
| TGTACAAGTATTACAGTGTA+TGG | + | chr1_1:15977857-15977876 | None:intergenic | 30.0% | |
| TTCCAAATTTCATTTGGCAT+TGG | + | chr1_1:15977908-15977927 | None:intergenic | 30.0% | |
| TGGAAAAATGTCAGTGTTAA+CGG | + | chr1_1:15978033-15978052 | None:intergenic | 30.0% | |
| GAAATTTAAACCTGAATGGA+GGG | + | chr1_1:15978745-15978764 | None:intergenic | 30.0% | |
| CAGAAAAATACTTCAAGCAA+TGG | + | chr1_1:15978899-15978918 | None:intergenic | 30.0% | |
| TGAAATTGATGCTTATTGGT+GGG | + | chr1_1:15978931-15978950 | None:intergenic | 30.0% | |
| TCAATTTCACAATCAAACAC+CGG | - | chr1_1:15978942-15978961 | Msa0010550:intron | 30.0% | |
| AATTTCAAAGATGGTGATTC+CGG | + | chr1_1:15978964-15978983 | None:intergenic | 30.0% | |
| !! | CATCTTTGAAATTGGTTTAG+CGG | - | chr1_1:15978971-15978990 | Msa0010550:intron | 30.0% |
| !! | ATCTTTGAAATTGGTTTAGC+GGG | - | chr1_1:15978972-15978991 | Msa0010550:intron | 30.0% |
| TCACTTGATCCAACAATTAA+GGG | + | chr1_1:15975977-15975996 | None:intergenic | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | + | chr1_1:15976007-15976026 | None:intergenic | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | + | chr1_1:15976008-15976027 | None:intergenic | 30.0% | |
| TTGATTCCACTTTAATGACT+TGG | - | chr1_1:15976024-15976043 | Msa0010550:intron | 30.0% | |
| ! | AAGAGTCTCATTCATCATTT+TGG | + | chr1_1:15979398-15979417 | None:intergenic | 30.0% |
| TATTGTTCAACACTATGAAG+AGG | + | chr1_1:15979558-15979577 | None:intergenic | 30.0% | |
| AAGGAATATGACAAAAATGC+AGG | + | chr1_1:15979784-15979803 | None:intergenic | 30.0% | |
| ! | ACAGGTTTGGTTATTTCAAA+AGG | - | chr1_1:15979819-15979838 | Msa0010550:intron | 30.0% |
| ! | CAGGTTTGGTTATTTCAAAA+GGG | - | chr1_1:15979820-15979839 | Msa0010550:intron | 30.0% |
| AAAAGGGTTTGATTAGGTTA+TGG | - | chr1_1:15979836-15979855 | Msa0010550:intron | 30.0% | |
| TTAGGTTATGGAGAAATTGA+AGG | - | chr1_1:15979848-15979867 | Msa0010550:intron | 30.0% | |
| ! | GTTTTTGAATCATACTGTGT+TGG | + | chr1_1:15979932-15979951 | None:intergenic | 30.0% |
| ! | TTTCATCTTTTATTCAGTGG+CGG | + | chr1_1:15980315-15980334 | None:intergenic | 30.0% |
| TTGGAAGATCAATACTACAT+TGG | + | chr1_1:15980555-15980574 | None:intergenic | 30.0% | |
| TCTTCCAAAAAAACATAAGG+AGG | - | chr1_1:15980567-15980586 | Msa0010550:intron | 30.0% | |
| !!! | ACAACCTCCTTATGTTTTTT+TGG | + | chr1_1:15980574-15980593 | None:intergenic | 30.0% |
| GCATTGAGACTTTAGATTAT+AGG | - | chr1_1:15980718-15980737 | Msa0010550:intron | 30.0% | |
| TTGGATGATCAATACTACAT+TGG | + | chr1_1:15980973-15980992 | None:intergenic | 30.0% | |
| !!! | AGAAGCTCCTTATGTTTTTT+TGG | + | chr1_1:15980992-15981011 | None:intergenic | 30.0% |
| CTTTAGATTATAAGTGTGTC+CGG | - | chr1_1:15981149-15981168 | Msa0010550:intron | 30.0% | |
| TTGGATGAATAACACTACAT+TGG | + | chr1_1:15981352-15981371 | None:intergenic | 30.0% | |
| AATTGAATTCATCCAATGAC+TGG | + | chr1_1:15981416-15981435 | None:intergenic | 30.0% | |
| ! | TTTCTTTGATTTCTTTCCAC+TGG | - | chr1_1:15981623-15981642 | Msa0010550:intron | 30.0% |
| TTAATGTATTGAAGCCATAG+CGG | + | chr1_1:15981753-15981772 | None:intergenic | 30.0% | |
| TCGTATCCCAAAGTTAATAA+GGG | + | chr1_1:15981780-15981799 | None:intergenic | 30.0% | |
| TTCGTATCCCAAAGTTAATA+AGG | + | chr1_1:15981781-15981800 | None:intergenic | 30.0% | |
| CTCAATATTCTAAACGTTGA+GGG | - | chr1_1:15982000-15982019 | Msa0010550:intron | 30.0% | |
| AGATACAGGGAAGAATAAAA+AGG | + | chr1_1:15982050-15982069 | None:intergenic | 30.0% | |
| ! | AGTTTGGTTACTTTCAGTTT+CGG | - | chr1_1:15982074-15982093 | Msa0010550:intron | 30.0% |
| !! | TCCTTATTATTTTGCCAGTA+TGG | - | chr1_1:15982153-15982172 | Msa0010550:intron | 30.0% |
| TCCATACTGGCAAAATAATA+AGG | + | chr1_1:15982157-15982176 | None:intergenic | 30.0% | |
| !! | TTATTTTGCCAGTATGGAAT+TGG | - | chr1_1:15982159-15982178 | Msa0010550:intron | 30.0% |
| ! | TATTTTGCCAGTATGGAATT+GGG | - | chr1_1:15982160-15982179 | Msa0010550:intron | 30.0% |
| ! | TAAAAAGGTGTATTTGGGTT+GGG | + | chr1_1:15982202-15982221 | None:intergenic | 30.0% |
| ! | ACACCTTTTTACTATGTTGA+AGG | - | chr1_1:15982211-15982230 | Msa0010550:CDS | 30.0% |
| TACTATGTTGAAGGTTTCTT+TGG | - | chr1_1:15982220-15982239 | Msa0010550:CDS | 30.0% | |
| ! | ATCTGTAAAATTTCTGGAGA+TGG | - | chr1_1:15982350-15982369 | Msa0010550:CDS | 30.0% |
| ACAGTGAGAGAATGGAATTT+GGG | + | chr1_1:15975189-15975208 | None:intergenic | 35.0% | |
| TACAGTGAGAGAATGGAATT+TGG | + | chr1_1:15975190-15975209 | None:intergenic | 35.0% | |
| TACGTTAAATCTAGACTTCC+TGG | - | chr1_1:15975264-15975283 | Msa0010550:three_prime_UTR | 35.0% | |
| CATTAATTACCGTGATGCTA+AGG | - | chr1_1:15975377-15975396 | Msa0010550:three_prime_UTR | 35.0% | |
| ! | TTACACCATCCCAAACTTTT+TGG | + | chr1_1:15975691-15975710 | None:intergenic | 35.0% |
| CAATGGTTAACAAGAAGGAT+AGG | + | chr1_1:15975908-15975927 | None:intergenic | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | + | chr1_1:15975925-15975944 | None:intergenic | 35.0% | |
| GTCACTTGATCCAACAATTA+AGG | + | chr1_1:15975978-15975997 | None:intergenic | 35.0% | |
| !! | GACTTGGCTTTGCTTATATT+TGG | - | chr1_1:15976040-15976059 | Msa0010550:intron | 35.0% |
| !! | ACAAGGTTGATTTTAATGGG+GGG | + | chr1_1:15976080-15976099 | None:intergenic | 35.0% |
| !! | GACAAGGTTGATTTTAATGG+GGG | + | chr1_1:15976081-15976100 | None:intergenic | 35.0% |
| !! | GGACAAGGTTGATTTTAATG+GGG | + | chr1_1:15976082-15976101 | None:intergenic | 35.0% |
| !! | GAGGACAAGGTTGATTTTAA+TGG | + | chr1_1:15976084-15976103 | None:intergenic | 35.0% |
| TAAAATCAACCTTGTCCTCA+AGG | - | chr1_1:15976085-15976104 | Msa0010550:intron | 35.0% | |
| ATAAAGTAGCAACTTCCACA+TGG | - | chr1_1:15976132-15976151 | Msa0010550:intron | 35.0% | |
| !! | TGGATGTTTTATTGTCCATG+TGG | + | chr1_1:15976150-15976169 | None:intergenic | 35.0% |
| !! | ACTCTAAGGACCTTTTGATA+TGG | - | chr1_1:15976189-15976208 | Msa0010550:intron | 35.0% |
| !!! | GTGTTTTTGATTTCAACCGT+TGG | + | chr1_1:15976224-15976243 | None:intergenic | 35.0% |
| GCAATGTTTCACTTCTAACA+TGG | + | chr1_1:15976246-15976265 | None:intergenic | 35.0% | |
| TGACTCATCTATTGATGTCA+GGG | + | chr1_1:15976319-15976338 | None:intergenic | 35.0% | |
| ATGACTCATCTATTGATGTC+AGG | + | chr1_1:15976320-15976339 | None:intergenic | 35.0% | |
| CCTAAAGTTACAAACATTGG+TGG | + | chr1_1:15976360-15976379 | None:intergenic | 35.0% | |
| CCACCAATGTTTGTAACTTT+AGG | - | chr1_1:15976357-15976376 | Msa0010550:intron | 35.0% | |
| TGGCCTAAAGTTACAAACAT+TGG | + | chr1_1:15976363-15976382 | None:intergenic | 35.0% | |
| !! | TATGGCTCTAAGAACTTGTT+AGG | + | chr1_1:15976437-15976456 | None:intergenic | 35.0% |
| GAATATGGAACTCCATCTAT+TGG | - | chr1_1:15976530-15976549 | Msa0010550:intron | 35.0% | |
| ATCTATTGGTGCATTACTCA+GGG | - | chr1_1:15976544-15976563 | Msa0010550:intron | 35.0% | |
| !! | ATTGTTGGTGGCTATGTTAA+TGG | + | chr1_1:15976596-15976615 | None:intergenic | 35.0% |
| TCAGGTTTGACAAAATGGTT+TGG | + | chr1_1:15976671-15976690 | None:intergenic | 35.0% | |
| ! | GGGAATTATGAACTTGTTCA+TGG | + | chr1_1:15976819-15976838 | None:intergenic | 35.0% |
| GTGCATACAATGGTAGAATA+TGG | + | chr1_1:15976896-15976915 | None:intergenic | 35.0% | |
| GTTTAATTGGGTGCATACAA+TGG | + | chr1_1:15976906-15976925 | None:intergenic | 35.0% | |
| ! | GGATTAATGAGGCGTTTAAT+TGG | + | chr1_1:15976919-15976938 | None:intergenic | 35.0% |
| CTATGATATTTGCACTTGTG+GGG | + | chr1_1:15976985-15977004 | None:intergenic | 35.0% | |
| TTCTTCCACTAACTGAATCT+TGG | - | chr1_1:15977018-15977037 | Msa0010550:intron | 35.0% | |
| TCTTCCACTAACTGAATCTT+GGG | - | chr1_1:15977019-15977038 | Msa0010550:intron | 35.0% | |
| GCAAGTCAATCTTTCAATTC+TGG | + | chr1_1:15977145-15977164 | None:intergenic | 35.0% | |
| CTTGGAATTCATGGTAACTT+TGG | + | chr1_1:15977274-15977293 | None:intergenic | 35.0% | |
| !! | GTCTCTAGAACTATTCTCAA+AGG | + | chr1_1:15977460-15977479 | None:intergenic | 35.0% |
| AAGGAAATACACGGTGTAAT+GGG | + | chr1_1:15977574-15977593 | None:intergenic | 35.0% | |
| TAAGGAAATACACGGTGTAA+TGG | + | chr1_1:15977575-15977594 | None:intergenic | 35.0% | |
| ! | GGGGTGTTAAGAATTATTGT+TGG | + | chr1_1:15977601-15977620 | None:intergenic | 35.0% |
| ! | CTACGAATTTAGCTTATGCT+TGG | + | chr1_1:15977669-15977688 | None:intergenic | 35.0% |
| ! | CATTTTTGTGCCACAAATTC+TGG | + | chr1_1:15977752-15977771 | None:intergenic | 35.0% |
| TGCTATAAAGGGGATTTAGT+TGG | + | chr1_1:15977781-15977800 | None:intergenic | 35.0% | |
| GGAAGAAGAAAATGCTAAAG+TGG | + | chr1_1:15977827-15977846 | None:intergenic | 35.0% | |
| ! | ATTACAGTGTATGGGTTTTG+AGG | + | chr1_1:15977848-15977867 | None:intergenic | 35.0% |
| !! | ATTTCATTTGGCATTGGTCA+AGG | + | chr1_1:15977902-15977921 | None:intergenic | 35.0% |
| GACCAATGCCAAATGAAATT+TGG | - | chr1_1:15977903-15977922 | Msa0010550:intron | 35.0% | |
| ! | GTAAGGATTTTATGTGTGTG+AGG | - | chr1_1:15977958-15977977 | Msa0010550:intron | 35.0% |
| GTTTCAAATCAATGACTCCT+TGG | + | chr1_1:15978007-15978026 | None:intergenic | 35.0% | |
| ! | ACACTGACATTTTTCCAAAC+AGG | - | chr1_1:15978036-15978055 | Msa0010550:intron | 35.0% |
| ! | ACATTTTTCCAAACAGGTAG+TGG | - | chr1_1:15978042-15978061 | Msa0010550:intron | 35.0% |
| AACTACAAATCTACTTGACG+CGG | + | chr1_1:15978355-15978374 | None:intergenic | 35.0% | |
| ! | CCTTCAATTGATTTCAATGC+TGG | + | chr1_1:15978378-15978397 | None:intergenic | 35.0% |
| ! | CCAGCATTGAAATCAATTGA+AGG | - | chr1_1:15978375-15978394 | Msa0010550:intron | 35.0% |
| GCATTGAAATCAATTGAAGG+AGG | - | chr1_1:15978378-15978397 | Msa0010550:intron | 35.0% | |
| TGACGATTAAATTCTTCACC+TGG | - | chr1_1:15978409-15978428 | Msa0010550:intron | 35.0% | |
| GACGATTAAATTCTTCACCT+GGG | - | chr1_1:15978410-15978429 | Msa0010550:intron | 35.0% | |
| GTAACAGAATGTTCCTCTAT+TGG | - | chr1_1:15978444-15978463 | Msa0010550:intron | 35.0% | |
| ! | TTGCAACAGCTCAAGAATTT+TGG | - | chr1_1:15978536-15978555 | Msa0010550:intron | 35.0% |
| GGAAATTTAAACCTGAATGG+AGG | + | chr1_1:15978746-15978765 | None:intergenic | 35.0% | |
| GTGAAATTGATGCTTATTGG+TGG | + | chr1_1:15978932-15978951 | None:intergenic | 35.0% | |
| !! | GGAATCACCATCTTTGAAAT+TGG | - | chr1_1:15978963-15978982 | Msa0010550:intron | 35.0% |
| CGCTAAACCAATTTCAAAGA+TGG | + | chr1_1:15978973-15978992 | None:intergenic | 35.0% | |
| CAATGGTTAACAAGAAGGAT+AGG | + | chr1_1:15975908-15975927 | None:intergenic | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | + | chr1_1:15975925-15975944 | None:intergenic | 35.0% | |
| GTCACTTGATCCAACAATTA+AGG | + | chr1_1:15975978-15975997 | None:intergenic | 35.0% | |
| !! | GACTTGGCTTTGCTTATATT+TGG | - | chr1_1:15976040-15976059 | Msa0010550:intron | 35.0% |
| ! | AGTCTCATTCATCATTTTGG+CGG | + | chr1_1:15979395-15979414 | None:intergenic | 35.0% |
| TATTGTTCAGCACTATGAAG+AGG | + | chr1_1:15979586-15979605 | None:intergenic | 35.0% | |
| CAGGTCTATACATGAAAGTA+TGG | + | chr1_1:15979765-15979784 | None:intergenic | 35.0% | |
| TCATATTCCTTCAATCACAG+AGG | - | chr1_1:15979793-15979812 | Msa0010550:intron | 35.0% | |
| TCTTAGCTGTTATCGTTGTT+TGG | + | chr1_1:15979908-15979927 | None:intergenic | 35.0% | |
| GGAAAAAGGAAAATCTAACG+AGG | - | chr1_1:15979957-15979976 | Msa0010550:intron | 35.0% | |
| AGGTTGTTAGCAAACATAAG+TGG | - | chr1_1:15980587-15980606 | Msa0010550:intron | 35.0% | |
| GGTTGTTAGCAAACATAAGT+GGG | - | chr1_1:15980588-15980607 | Msa0010550:intron | 35.0% | |
| !!! | GGTTTTAGAAAGGAAGTGAA+AGG | - | chr1_1:15980617-15980636 | Msa0010550:intron | 35.0% |
| CTTTAGATTATAGGTGTGTC+CGG | - | chr1_1:15980727-15980746 | Msa0010550:intron | 35.0% | |
| TGTGGTTACGTTCAATTTAC+TGG | - | chr1_1:15980790-15980809 | Msa0010550:intron | 35.0% | |
| AGCTTCTTACCAAACATAAG+TGG | - | chr1_1:15981005-15981024 | Msa0010550:intron | 35.0% | |
| GCTTCTTACCAAACATAAGT+GGG | - | chr1_1:15981006-15981025 | Msa0010550:intron | 35.0% | |
| CACTAACATTTGTCGTATAC+CGG | + | chr1_1:15981171-15981190 | None:intergenic | 35.0% | |
| TCTCAGTTGTTAGAATCCAA+CGG | - | chr1_1:15981458-15981477 | Msa0010550:intron | 35.0% | |
| !! | GTTTGGATGAAGAGTTTTGA+AGG | + | chr1_1:15981601-15981620 | None:intergenic | 35.0% |
| AGGACTAATAAGAAAACCAG+TGG | + | chr1_1:15981642-15981661 | None:intergenic | 35.0% | |
| TGATGACAGATAGCAACATA+AGG | + | chr1_1:15981662-15981681 | None:intergenic | 35.0% | |
| GTTGTACAGGAATATCTTCA+AGG | - | chr1_1:15981723-15981742 | Msa0010550:intron | 35.0% | |
| GCTATGGCTTCAATACATTA+AGG | - | chr1_1:15981752-15981771 | Msa0010550:intron | 35.0% | |
| ! | TAAGGTGCCCTTATTAACTT+TGG | - | chr1_1:15981770-15981789 | Msa0010550:intron | 35.0% |
| ! | AAGGTGCCCTTATTAACTTT+GGG | - | chr1_1:15981771-15981790 | Msa0010550:intron | 35.0% |
| ! | CCTCAACGTTTAGAATATTG+AGG | + | chr1_1:15982002-15982021 | None:intergenic | 35.0% |
| CCTCAATATTCTAAACGTTG+AGG | - | chr1_1:15981999-15982018 | Msa0010550:intron | 35.0% | |
| AATATTCTAAACGTTGAGGG+TGG | - | chr1_1:15982003-15982022 | Msa0010550:intron | 35.0% | |
| AACCAAACTACAGAGATACA+GGG | + | chr1_1:15982063-15982082 | None:intergenic | 35.0% | |
| TAACCAAACTACAGAGATAC+AGG | + | chr1_1:15982064-15982083 | None:intergenic | 35.0% | |
| ! | GTTTCGGAACTATTGATTGT+AGG | - | chr1_1:15982090-15982109 | Msa0010550:intron | 35.0% |
| ATTGATTGTAGGTTTCACTG+AGG | - | chr1_1:15982101-15982120 | Msa0010550:intron | 35.0% | |
| ATAATAAGGAAACAAAGGGC+AGG | + | chr1_1:15982143-15982162 | None:intergenic | 35.0% | |
| TACATTTCCCAATTCCATAC+TGG | + | chr1_1:15982170-15982189 | None:intergenic | 35.0% | |
| AGTATGGAATTGGGAAATGT+AGG | - | chr1_1:15982169-15982188 | Msa0010550:intron | 35.0% | |
| ! | GTAAAAAGGTGTATTTGGGT+TGG | + | chr1_1:15982203-15982222 | None:intergenic | 35.0% |
| CATCTCAATACACTTGAACA+AGG | + | chr1_1:15982300-15982319 | None:intergenic | 35.0% | |
| TATAGTGTACACATGGTACA+AGG | + | chr1_1:15982385-15982404 | None:intergenic | 35.0% | |
| TGCATGTTATAGTGTACACA+TGG | + | chr1_1:15982392-15982411 | None:intergenic | 35.0% | |
| GGAAGATGTGAGAGATGATA+AGG | + | chr1_1:15975082-15975101 | None:intergenic | 40.0% | |
| !! | TGGTTTGGAAGAGATTTTGG+AGG | + | chr1_1:15975124-15975143 | None:intergenic | 40.0% |
| !!! | GGTTGGTTTGGAAGAGATTT+TGG | + | chr1_1:15975127-15975146 | None:intergenic | 40.0% |
| TTGCAGTTACAGTGAGAGAA+TGG | + | chr1_1:15975197-15975216 | None:intergenic | 40.0% | |
| !!! | TGTTTTGAGGTCAGCGATTT+CGG | + | chr1_1:15975244-15975263 | None:intergenic | 40.0% |
| GTTAAATCTAGACTTCCTGG+TGG | - | chr1_1:15975267-15975286 | Msa0010550:three_prime_UTR | 40.0% | |
| TTCGCTGCTCAAACTATCAT+CGG | - | chr1_1:15975291-15975310 | Msa0010550:three_prime_UTR | 40.0% | |
| ! | TATTGCTCGTGTTGTTCTTC+AGG | - | chr1_1:15975335-15975354 | Msa0010550:three_prime_UTR | 40.0% |
| TGTTGTTCTTCAGGAAGGAA+CGG | - | chr1_1:15975344-15975363 | Msa0010550:three_prime_UTR | 40.0% | |
| !!! | ACGGATGGAGTGTTTTAGAA+AGG | - | chr1_1:15975641-15975660 | Msa0010550:CDS | 40.0% |
| GAAAGGAATAAAAGCAGTGG+CGG | - | chr1_1:15975658-15975677 | Msa0010550:CDS | 40.0% | |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1_1:15975849-15975868 | Msa0010550:intron | 40.0% |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1_1:15975850-15975869 | Msa0010550:intron | 40.0% |
| GCAAAGCCAAGTCATTAAAG+TGG | + | chr1_1:15976033-15976052 | None:intergenic | 40.0% | |
| TTATCTTGACTCCAACCTTG+AGG | + | chr1_1:15976103-15976122 | None:intergenic | 40.0% | |
| CAAGGTTGGAGTCAAGATAA+TGG | - | chr1_1:15976103-15976122 | Msa0010550:intron | 40.0% | |
| TGGACAATAAAACATCCACC+AGG | - | chr1_1:15976152-15976171 | Msa0010550:intron | 40.0% | |
| ATCCCACAACTTGAACTCTA+AGG | - | chr1_1:15976175-15976194 | Msa0010550:intron | 40.0% | |
| !! | GTCCTTAGAGTTCAAGTTGT+GGG | + | chr1_1:15976180-15976199 | None:intergenic | 40.0% |
| TTGCATGCAAACAGAACCTT+TGG | - | chr1_1:15976274-15976293 | Msa0010550:intron | 40.0% | |
| GGAACATATCAAGACACCAA+AGG | + | chr1_1:15976293-15976312 | None:intergenic | 40.0% | |
| CATCTATTGATGTCAGGGTT+AGG | + | chr1_1:15976314-15976333 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGGTTCATGAGAG+TGG | + | chr1_1:15976383-15976402 | None:intergenic | 40.0% |
| ACTCTCATGAACCAAACTAG+TGG | - | chr1_1:15976382-15976401 | Msa0010550:intron | 40.0% | |
| !! | CTTGAGAAGTACCACTAGTT+TGG | + | chr1_1:15976396-15976415 | None:intergenic | 40.0% |
| !! | CTAAGAACTTGTTAGGTGTG+AGG | + | chr1_1:15976430-15976449 | None:intergenic | 40.0% |
| CTGAGTAATGCACCAATAGA+TGG | + | chr1_1:15976545-15976564 | None:intergenic | 40.0% | |
| CATCTATTGGTGCATTACTC+AGG | - | chr1_1:15976543-15976562 | Msa0010550:intron | 40.0% | |
| TGGCATCAGGTTTGACAAAA+TGG | + | chr1_1:15976676-15976695 | None:intergenic | 40.0% | |
| !!! | CTGTGGTAGTGGTGTTATTT+TGG | + | chr1_1:15976715-15976734 | None:intergenic | 40.0% |
| ATCATTCCCTGTTGCATCTA+TGG | - | chr1_1:15976763-15976782 | Msa0010550:intron | 40.0% | |
| ACAAGTCCATAGATGCAACA+GGG | + | chr1_1:15976772-15976791 | None:intergenic | 40.0% | |
| AAACGCCTCATTAATCCCAT+AGG | - | chr1_1:15976922-15976941 | Msa0010550:intron | 40.0% | |
| TGTACCCAAGATTCAGTTAG+TGG | + | chr1_1:15977026-15977045 | None:intergenic | 40.0% | |
| CTTGGGTACAGAAATAGAAG+AGG | - | chr1_1:15977036-15977055 | Msa0010550:intron | 40.0% | |
| CAATTAAAATGGCCACCTCA+TGG | - | chr1_1:15977077-15977096 | Msa0010550:intron | 40.0% | |
| CTTTCAATTCTGGTGACTCA+AGG | + | chr1_1:15977135-15977154 | None:intergenic | 40.0% | |
| GGAATTCATGGTAACTTTGG+TGG | + | chr1_1:15977271-15977290 | None:intergenic | 40.0% | |
| !! | GTTGGTGGTAAGGAAATACA+CGG | + | chr1_1:15977583-15977602 | None:intergenic | 40.0% |
| ! | TTTTATGTGTGTGAGGACGA+AGG | - | chr1_1:15977965-15977984 | Msa0010550:intron | 40.0% |
| AGGACGAAGGAAATCAAACA+AGG | - | chr1_1:15977978-15977997 | Msa0010550:intron | 40.0% | |
| GAAATCAAACAAGGATGCCA+AGG | - | chr1_1:15977987-15978006 | Msa0010550:intron | 40.0% | |
| CGACGAAATTTCATTCGAAG+TGG | + | chr1_1:15978167-15978186 | None:intergenic | 40.0% | |
| ! | AGATCGAAGCGTTCAAAAGA+CGG | + | chr1_1:15978193-15978212 | None:intergenic | 40.0% |
| !! | TGTGGTTTTCAGAAGAGCAT+TGG | + | chr1_1:15978270-15978289 | None:intergenic | 40.0% |
| !! | ATGTTCCTCTATTGGTTCCA+CGG | - | chr1_1:15978452-15978471 | Msa0010550:intron | 40.0% |
| AATTCTTGAGCTGTTGCAAG+AGG | + | chr1_1:15978535-15978554 | None:intergenic | 40.0% | |
| ! | TCATACTTGAGTTGTGCTGT+CGG | - | chr1_1:15978592-15978611 | Msa0010550:intron | 40.0% |
| TCCAGATCATCTTCATCATC+AGG | - | chr1_1:15978705-15978724 | Msa0010550:intron | 40.0% | |
| ! | ACCTGATGATGAAGATGATC+TGG | + | chr1_1:15978709-15978728 | None:intergenic | 40.0% |
| AGATCATCTTCATCATCAGG+TGG | - | chr1_1:15978708-15978727 | Msa0010550:intron | 40.0% | |
| GATCATCTTCATCATCAGGT+GGG | - | chr1_1:15978709-15978728 | Msa0010550:intron | 40.0% | |
| ATCATCTTCATCATCAGGTG+GGG | - | chr1_1:15978710-15978729 | Msa0010550:intron | 40.0% | |
| GGTAAAATAACCCTCCATTC+AGG | - | chr1_1:15978732-15978751 | Msa0010550:intron | 40.0% | |
| ! | CCTTCACTTCAGTTTTCCTT+TGG | + | chr1_1:15978767-15978786 | None:intergenic | 40.0% |
| CCAAAGGAAAACTGAAGTGA+AGG | - | chr1_1:15978764-15978783 | Msa0010550:intron | 40.0% | |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1_1:15975849-15975868 | Msa0010550:intron | 40.0% |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1_1:15975850-15975869 | Msa0010550:intron | 40.0% |
| GCAAAGCCAAGTCATTAAAG+TGG | + | chr1_1:15976033-15976052 | None:intergenic | 40.0% | |
| ! | CTGTTTTCCTCTGTGATTGA+AGG | + | chr1_1:15979803-15979822 | None:intergenic | 40.0% |
| CTTCAATCACAGAGGAAAAC+AGG | - | chr1_1:15979801-15979820 | Msa0010550:intron | 40.0% | |
| ATCACAGAGGAAAACAGGTT+TGG | - | chr1_1:15979806-15979825 | Msa0010550:intron | 40.0% | |
| ! | GGTTTATGGCTCTGTAGTAA+CGG | - | chr1_1:15980006-15980025 | Msa0010550:intron | 40.0% |
| CAAAATGAGAGAGGGATAGT+TGG | - | chr1_1:15980179-15980198 | Msa0010550:intron | 40.0% | |
| TAGAATAAATGGGTAGGCCA+TGG | - | chr1_1:15980266-15980285 | Msa0010550:intron | 40.0% | |
| TGTTAGCAAACATAAGTGGG+AGG | - | chr1_1:15980591-15980610 | Msa0010550:intron | 40.0% | |
| GTTAGCAAACATAAGTGGGA+GGG | - | chr1_1:15980592-15980611 | Msa0010550:intron | 40.0% | |
| GACTAACATTTGTCGTACAC+CGG | + | chr1_1:15980749-15980768 | None:intergenic | 40.0% | |
| TCTTACCAAACATAAGTGGG+AGG | - | chr1_1:15981009-15981028 | Msa0010550:intron | 40.0% | |
| CTTACCAAACATAAGTGGGA+GGG | - | chr1_1:15981010-15981029 | Msa0010550:intron | 40.0% | |
| ! | TGTGGTGACGTTCAATTTAC+AGG | - | chr1_1:15981212-15981231 | Msa0010550:intron | 40.0% |
| !! | TCCAATGACTGGCTTTGATT+GGG | + | chr1_1:15981405-15981424 | None:intergenic | 40.0% |
| !! | ATCCAATGACTGGCTTTGAT+TGG | + | chr1_1:15981406-15981425 | None:intergenic | 40.0% |
| !!! | AGTTTTGAAGGCAAAGTCGA+AGG | + | chr1_1:15981589-15981608 | None:intergenic | 40.0% |
| ATCTTCAAGGAAATCCGCTA+TGG | - | chr1_1:15981736-15981755 | Msa0010550:intron | 40.0% | |
| TGATGTGTTTGTGAAAGCTG+AGG | - | chr1_1:15981809-15981828 | Msa0010550:intron | 40.0% | |
| GATGTGTTTGTGAAAGCTGA+GGG | - | chr1_1:15981810-15981829 | Msa0010550:intron | 40.0% | |
| !! | AGAGTACCTTTGAGACAACA+AGG | - | chr1_1:15981909-15981928 | Msa0010550:intron | 40.0% |
| !! | GAGTACCTTTGAGACAACAA+GGG | - | chr1_1:15981910-15981929 | Msa0010550:intron | 40.0% |
| TTCCCTGTATCTCTGTAGTT+TGG | - | chr1_1:15982058-15982077 | Msa0010550:intron | 40.0% | |
| TTCACTGAGGCCTTTGTATT+CGG | - | chr1_1:15982114-15982133 | Msa0010550:CDS | 40.0% | |
| ! | ATTTCTGGAGATGGTTGTTG+TGG | - | chr1_1:15982359-15982378 | Msa0010550:CDS | 40.0% |
| !!! | ACATGCAGTTTTTAGAGCCA+AGG | - | chr1_1:15982405-15982424 | Msa0010550:CDS | 40.0% |
| !! | GGAAGAGATTTTGGAGGAGA+AGG | + | chr1_1:15975118-15975137 | None:intergenic | 45.0% |
| !!! | GTTTTGAGGTCAGCGATTTC+GGG | + | chr1_1:15975243-15975262 | None:intergenic | 45.0% |
| GCTCAAACTATCATCGGTAC+CGG | - | chr1_1:15975297-15975316 | Msa0010550:three_prime_UTR | 45.0% | |
| ! | AATAGCAGTTTTCCGACGAC+CGG | + | chr1_1:15975319-15975338 | None:intergenic | 45.0% |
| GTTGTTCTTCAGGAAGGAAC+GGG | - | chr1_1:15975345-15975364 | Msa0010550:three_prime_UTR | 45.0% | |
| GGAGCCAGACCAAAAAGTTT+GGG | - | chr1_1:15975679-15975698 | Msa0010550:CDS | 45.0% | |
| !! | CCATCCCAAACTTTTTGGTC+TGG | + | chr1_1:15975686-15975705 | None:intergenic | 45.0% |
| CCAGACCAAAAAGTTTGGGA+TGG | - | chr1_1:15975683-15975702 | Msa0010550:CDS | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | + | chr1_1:15975913-15975932 | None:intergenic | 45.0% | |
| ATCAACCTTGTCCTCAAGGT+TGG | - | chr1_1:15976089-15976108 | Msa0010550:intron | 45.0% | |
| !! | GGTCCTTAGAGTTCAAGTTG+TGG | + | chr1_1:15976181-15976200 | None:intergenic | 45.0% |
| !! | ATGAAATAGGTGGACTGTGC+AGG | - | chr1_1:15976483-15976502 | Msa0010550:intron | 45.0% |
| TTGGATGAGACTACGGCAAA+TGG | + | chr1_1:15976696-15976715 | None:intergenic | 45.0% | |
| TCTCACTAAAGCTGTGGTAG+TGG | + | chr1_1:15976726-15976745 | None:intergenic | 45.0% | |
| ! | ACCACAGCTTTAGTGAGACT+TGG | - | chr1_1:15976728-15976747 | Msa0010550:intron | 45.0% |
| ! | CCACAGCTTTAGTGAGACTT+GGG | - | chr1_1:15976729-15976748 | Msa0010550:intron | 45.0% |
| CACAAGTCCATAGATGCAAC+AGG | + | chr1_1:15976773-15976792 | None:intergenic | 45.0% | |
| CTGTTGCATCTATGGACTTG+TGG | - | chr1_1:15976771-15976790 | Msa0010550:intron | 45.0% | |
| CCTAGCCTATGGGATTAATG+AGG | + | chr1_1:15976930-15976949 | None:intergenic | 45.0% | |
| CCTCATTAATCCCATAGGCT+AGG | - | chr1_1:15976927-15976946 | Msa0010550:intron | 45.0% | |
| TGGGAAAATGCCTAGCCTAT+GGG | + | chr1_1:15976940-15976959 | None:intergenic | 45.0% | |
| ! | TTTGGTGGTCTCTCTTGTCA+TGG | + | chr1_1:15977256-15977275 | None:intergenic | 45.0% |
| ATCAAACAGTGACGCAGTTC+AGG | + | chr1_1:15977512-15977531 | None:intergenic | 45.0% | |
| !! | AATACACGGTGTAATGGGTG+AGG | + | chr1_1:15977569-15977588 | None:intergenic | 45.0% |
| CACCTTGCTGAGTAATTGTG+GGG | + | chr1_1:15977620-15977639 | None:intergenic | 45.0% | |
| CCACCTTGCTGAGTAATTGT+GGG | + | chr1_1:15977621-15977640 | None:intergenic | 45.0% | |
| CCACAATTACTCAGCAAGGT+GGG | - | chr1_1:15977619-15977638 | Msa0010550:intron | 45.0% | |
| !! | GCTTGGGCTGTTTTACTTCA+TGG | + | chr1_1:15977652-15977671 | None:intergenic | 45.0% |
| CAGTTTGTCCACTACCTGTT+TGG | + | chr1_1:15978053-15978072 | None:intergenic | 45.0% | |
| !! | CACTGCTCTGGAATTGTCAT+CGG | - | chr1_1:15978107-15978126 | Msa0010550:intron | 45.0% |
| !! | ACTGCTCTGGAATTGTCATC+GGG | - | chr1_1:15978108-15978127 | Msa0010550:intron | 45.0% |
| ! | GTCTTTTGAACGCTTCGATC+TGG | - | chr1_1:15978192-15978211 | Msa0010550:intron | 45.0% |
| ! | TTTTGAACGCTTCGATCTGG+CGG | - | chr1_1:15978195-15978214 | Msa0010550:intron | 45.0% |
| ! | CTCTTCTGAAAACCACACTC+TGG | - | chr1_1:15978273-15978292 | Msa0010550:intron | 45.0% |
| TCTTCACCTGGGATGATTCA+CGG | - | chr1_1:15978421-15978440 | Msa0010550:intron | 45.0% | |
| ! | GCAACAACTTCGTCTGAAGT+CGG | - | chr1_1:15978477-15978496 | Msa0010550:intron | 45.0% |
| !! | GAATTTTGGCACACGACTCT+CGG | - | chr1_1:15978550-15978569 | Msa0010550:intron | 45.0% |
| TCATCTTCATCATCAGGTGG+GGG | - | chr1_1:15978711-15978730 | Msa0010550:intron | 45.0% | |
| ! | ACGTCATCCATGGGTTACTT+GGG | + | chr1_1:15978793-15978812 | None:intergenic | 45.0% |
| ATGGTATCCACGTCATCCAT+GGG | + | chr1_1:15978802-15978821 | None:intergenic | 45.0% | |
| AATGGTATCCACGTCATCCA+TGG | + | chr1_1:15978803-15978822 | None:intergenic | 45.0% | |
| GTGGCTGCAATTGCAATGAA+AGG | + | chr1_1:15978849-15978868 | None:intergenic | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | + | chr1_1:15975913-15975932 | None:intergenic | 45.0% | |
| !! | TCTGTAGTAACGGACAGAGA+GGG | - | chr1_1:15980016-15980035 | Msa0010550:intron | 45.0% |
| ACGGAGAGATTGAAGATGGA+GGG | - | chr1_1:15980098-15980117 | Msa0010550:intron | 45.0% | |
| !! | AGAGAGGGATAGTTGGTGAA+TGG | - | chr1_1:15980186-15980205 | Msa0010550:intron | 45.0% |
| GTCCAATGATCAACAAGCGT+TGG | - | chr1_1:15980422-15980441 | Msa0010550:intron | 45.0% | |
| ! | CACCAACGCTTGTTGATCAT+TGG | + | chr1_1:15980427-15980446 | None:intergenic | 45.0% |
| TGAAGAGTAACTGGGCATCA+TGG | - | chr1_1:15980510-15980529 | Msa0010550:intron | 45.0% | |
| GACACTAACATGAACGCATG+TGG | - | chr1_1:15980772-15980791 | Msa0010550:intron | 45.0% | |
| GACACTAACACGAATGCATG+TGG | - | chr1_1:15981194-15981213 | Msa0010550:intron | 45.0% | |
| ! | GTCGAAGTGTCTGTGTTTCA+TGG | - | chr1_1:15981236-15981255 | Msa0010550:intron | 45.0% |
| !! | CCAATGACTGGCTTTGATTG+GGG | + | chr1_1:15981404-15981423 | None:intergenic | 45.0% |
| ! | AGAAGCCCTTGTTGTCTCAA+AGG | + | chr1_1:15981918-15981937 | None:intergenic | 45.0% |
| !! | GAGATTCTAGAGCTGTTGAG+AGG | - | chr1_1:15981943-15981962 | Msa0010550:intron | 45.0% |
| GCTGTTGAGAGGAAGAAAGT+TGG | - | chr1_1:15981954-15981973 | Msa0010550:intron | 45.0% | |
| !! | AGAATAAAAAAATTAAATAA+TGG | - | chr1_1:15981103-15981122 | Msa0010550:intron | 5.0% |
| GGAGAAGGAGAGTGAAGAGA+GGG | + | chr1_1:15975103-15975122 | None:intergenic | 50.0% | |
| AGGAGAAGGAGAGTGAAGAG+AGG | + | chr1_1:15975104-15975123 | None:intergenic | 50.0% | |
| ! | GAGAGAGAGAGTGGTTGGTT+TGG | + | chr1_1:15975139-15975158 | None:intergenic | 50.0% |
| GAATTTGGGAGAGCGAGAGA+GGG | + | chr1_1:15975175-15975194 | None:intergenic | 50.0% | |
| ! | GCTCGTGTTGTTCTTCAGGA+AGG | - | chr1_1:15975339-15975358 | Msa0010550:three_prime_UTR | 50.0% |
| CGGAGCCAGACCAAAAAGTT+TGG | - | chr1_1:15975678-15975697 | Msa0010550:CDS | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | + | chr1_1:15975868-15975887 | None:intergenic | 50.0% | |
| TGACTCCAACCTTGAGGACA+AGG | + | chr1_1:15976097-15976116 | None:intergenic | 50.0% | |
| !! | TTCAAGTTGTGGGATCCTGG+TGG | + | chr1_1:15976170-15976189 | None:intergenic | 50.0% |
| !! | GAGTTCAAGTTGTGGGATCC+TGG | + | chr1_1:15976173-15976192 | None:intergenic | 50.0% |
| AGACTACGGCAAATGGCATC+AGG | + | chr1_1:15976689-15976708 | None:intergenic | 50.0% | |
| CCCAAGTCTCACTAAAGCTG+TGG | + | chr1_1:15976732-15976751 | None:intergenic | 50.0% | |
| CTGGGAAAATGCCTAGCCTA+TGG | + | chr1_1:15976941-15976960 | None:intergenic | 50.0% | |
| ! | CATAGGCTAGGCATTTTCCC+AGG | - | chr1_1:15976939-15976958 | Msa0010550:intron | 50.0% |
| AATGGCCACCTCATGGAGTT+TGG | - | chr1_1:15977084-15977103 | Msa0010550:intron | 50.0% | |
| TCTGGTGACTCAAGGCTGAT+GGG | + | chr1_1:15977127-15977146 | None:intergenic | 50.0% | |
| TTCTGGTGACTCAAGGCTGA+TGG | + | chr1_1:15977128-15977147 | None:intergenic | 50.0% | |
| !! | TGTAATGGGTGAGGAAGGTC+TGG | + | chr1_1:15977560-15977579 | None:intergenic | 50.0% |
| CACCCCACAATTACTCAGCA+AGG | - | chr1_1:15977615-15977634 | Msa0010550:intron | 50.0% | |
| CCCACAATTACTCAGCAAGG+TGG | - | chr1_1:15977618-15977637 | Msa0010550:intron | 50.0% | |
| CCCACCTTGCTGAGTAATTG+TGG | + | chr1_1:15977622-15977641 | None:intergenic | 50.0% | |
| AAGTATGGAGTCCACTGCTC+TGG | - | chr1_1:15978095-15978114 | Msa0010550:intron | 50.0% | |
| CGATGACAATTCCAGAGCAG+TGG | + | chr1_1:15978109-15978128 | None:intergenic | 50.0% | |
| !! | CTCTGGAATTGTCATCGGGT+GGG | - | chr1_1:15978112-15978131 | Msa0010550:intron | 50.0% |
| !! | GAGCATTGGAATGATCGCAG+CGG | + | chr1_1:15978256-15978275 | None:intergenic | 50.0% |
| AACATCGCAACACCAGAGTG+TGG | + | chr1_1:15978288-15978307 | None:intergenic | 50.0% | |
| ACTTGACGCGGATACGAAGA+AGG | + | chr1_1:15978343-15978362 | None:intergenic | 50.0% | |
| CTTCACCTGGGATGATTCAC+GGG | - | chr1_1:15978422-15978441 | Msa0010550:intron | 50.0% | |
| TGTTACCCGTGAATCATCCC+AGG | + | chr1_1:15978430-15978449 | None:intergenic | 50.0% | |
| GAATCGAGATCCCTAACAGC+AGG | - | chr1_1:15978630-15978649 | Msa0010550:intron | 50.0% | |
| AGATCCCTAACAGCAGGAGA+CGG | - | chr1_1:15978636-15978655 | Msa0010550:intron | 50.0% | |
| ACATCCGTCTCCTGCTGTTA+GGG | + | chr1_1:15978643-15978662 | None:intergenic | 50.0% | |
| AACATCCGTCTCCTGCTGTT+AGG | + | chr1_1:15978644-15978663 | None:intergenic | 50.0% | |
| TCACCTTGCTGCAACTGTTG+TGG | - | chr1_1:15978675-15978694 | Msa0010550:intron | 50.0% | |
| GAACCACAACAGTTGCAGCA+AGG | + | chr1_1:15978681-15978700 | None:intergenic | 50.0% | |
| ! | AAGGCATCCCAAGTAACCCA+TGG | - | chr1_1:15978783-15978802 | Msa0010550:intron | 50.0% |
| ! | CACGTCATCCATGGGTTACT+TGG | + | chr1_1:15978794-15978813 | None:intergenic | 50.0% |
| CAAGTAACCCATGGATGACG+TGG | - | chr1_1:15978792-15978811 | Msa0010550:intron | 50.0% | |
| CTCTCACATGGTGGCTTCAA+TGG | + | chr1_1:15978821-15978840 | None:intergenic | 50.0% | |
| AGAGGCAGAGAAGATGACAG+TGG | + | chr1_1:15978868-15978887 | None:intergenic | 50.0% | |
| ACTGTCATCTTCTCTGCCTC+TGG | - | chr1_1:15978867-15978886 | Msa0010550:intron | 50.0% | |
| CAAGCAATGGCTCATACCAG+AGG | + | chr1_1:15978886-15978905 | None:intergenic | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | + | chr1_1:15975868-15975887 | None:intergenic | 50.0% | |
| !! | CTCTGTAGTAACGGACAGAG+AGG | - | chr1_1:15980015-15980034 | Msa0010550:intron | 50.0% |
| GTCGACGGAGAGATTGAAGA+TGG | - | chr1_1:15980094-15980113 | Msa0010550:intron | 50.0% | |
| GACGGAGAGATTGAAGATGG+AGG | - | chr1_1:15980097-15980116 | Msa0010550:intron | 50.0% | |
| !! | GGGATAGTTGGTGAATGGCA+TGG | - | chr1_1:15980191-15980210 | Msa0010550:intron | 50.0% |
| !! | AGTTGGTGAATGGCATGGCA+TGG | - | chr1_1:15980196-15980215 | Msa0010550:intron | 50.0% |
| AGCAAACATAAGTGGGAGGG+AGG | - | chr1_1:15980595-15980614 | Msa0010550:intron | 50.0% | |
| GCAAACATAAGTGGGAGGGA+GGG | - | chr1_1:15980596-15980615 | Msa0010550:intron | 50.0% | |
| !!! | TGGGAGGGAGGGTTTTAGAA+AGG | - | chr1_1:15980607-15980626 | Msa0010550:intron | 50.0% |
| ACCAAACATAAGTGGGAGGG+AGG | - | chr1_1:15981013-15981032 | Msa0010550:intron | 50.0% | |
| CCAAACATAAGTGGGAGGGA+GGG | - | chr1_1:15981014-15981033 | Msa0010550:intron | 50.0% | |
| !!! | TGGGAGGGAGGGTTTTAGAA+AGG | - | chr1_1:15980607-15980626 | Msa0010550:intron | 50.0% |
| CCCCAATCAAAGCCAGTCAT+TGG | - | chr1_1:15981401-15981420 | Msa0010550:intron | 50.0% | |
| TACCTCTGCAGTTCAGAGGT+TGG | + | chr1_1:15981484-15981503 | None:intergenic | 50.0% | |
| GTGTTTGTGAAAGCTGAGGG+TGG | - | chr1_1:15981813-15981832 | Msa0010550:intron | 50.0% | |
| TTTGTGAAAGCTGAGGGTGG+TGG | - | chr1_1:15981816-15981835 | Msa0010550:intron | 50.0% | |
| CAACGCACGAGCAATACCAA+GGG | + | chr1_1:15981868-15981887 | None:intergenic | 50.0% | |
| TATTGCTCGTGCGTTGCTGA+AGG | - | chr1_1:15981872-15981891 | Msa0010550:intron | 50.0% | |
| GCGTTGCTGAAGGTTAGTGA+AGG | - | chr1_1:15981882-15981901 | Msa0010550:intron | 50.0% | |
| GGGCAGGATTCCGAATACAA+AGG | + | chr1_1:15982127-15982146 | None:intergenic | 50.0% | |
| GAGAGAGGGAGAAGGTTCTG+GGG | + | chr1_1:15975161-15975180 | None:intergenic | 55.0% | |
| CGAGAGAGGGAGAAGGTTCT+GGG | + | chr1_1:15975162-15975181 | None:intergenic | 55.0% | |
| GGAATTTGGGAGAGCGAGAG+AGG | + | chr1_1:15975176-15975195 | None:intergenic | 55.0% | |
| !! | GAGGTCAGCGATTTCGGGTT+CGG | + | chr1_1:15975238-15975257 | None:intergenic | 55.0% |
| GTTTGAGCAGCGAATCCACC+AGG | + | chr1_1:15975285-15975304 | None:intergenic | 55.0% | |
| !! | CTATCATCGGTACCGGTCGT+CGG | - | chr1_1:15975304-15975323 | Msa0010550:three_prime_UTR | 55.0% |
| GAGTGCCAAACTCCATGAGG+TGG | + | chr1_1:15977092-15977111 | None:intergenic | 55.0% | |
| GCTGAGTGCCAAACTCCATG+AGG | + | chr1_1:15977095-15977114 | None:intergenic | 55.0% | |
| CAAGGCTGATGGGAGTGGAA+TGG | + | chr1_1:15977117-15977136 | None:intergenic | 55.0% | |
| TGACTCAAGGCTGATGGGAG+TGG | + | chr1_1:15977122-15977141 | None:intergenic | 55.0% | |
| !! | CACGGTGTAATGGGTGAGGA+AGG | + | chr1_1:15977565-15977584 | None:intergenic | 55.0% |
| !! | GCTCTGGAATTGTCATCGGG+TGG | - | chr1_1:15978111-15978130 | Msa0010550:intron | 55.0% |
| GAATTGTCATCGGGTGGGTG+TGG | - | chr1_1:15978117-15978136 | Msa0010550:intron | 55.0% | |
| ! | ACGCTTCGATCTGGCGGTTT+TGG | - | chr1_1:15978201-15978220 | Msa0010550:intron | 55.0% |
| !! | CTTCGATCTGGCGGTTTTGG+TGG | - | chr1_1:15978204-15978223 | Msa0010550:intron | 55.0% |
| TGCGTCCGTGGAACCAATAG+AGG | + | chr1_1:15978460-15978479 | None:intergenic | 55.0% | |
| AGACGAAGTTGTTGCGTCCG+TGG | + | chr1_1:15978472-15978491 | None:intergenic | 55.0% | |
| AGAGGAGATAGACGCTACCG+AGG | + | chr1_1:15978517-15978536 | None:intergenic | 55.0% | |
| !! | CTGTCGGTTTGAGTCAGTCG+TGG | - | chr1_1:15978608-15978627 | Msa0010550:intron | 55.0% |
| TGAAGCCACCATGTGAGAGC+TGG | - | chr1_1:15978822-15978841 | Msa0010550:intron | 55.0% | |
| GAAGCCACCATGTGAGAGCT+GGG | - | chr1_1:15978823-15978842 | Msa0010550:intron | 55.0% | |
| TGAAAGGCCCAGCTCTCACA+TGG | + | chr1_1:15978833-15978852 | None:intergenic | 55.0% | |
| AACGGACAGAGAGGGAGAGA+TGG | - | chr1_1:15980024-15980043 | Msa0010550:intron | 55.0% | |
| CGCGAGAGTTGCAAGTGAGA+GGG | - | chr1_1:15980072-15980091 | Msa0010550:intron | 55.0% | |
| GTTGCAAGTGAGAGGGTCGA+CGG | - | chr1_1:15980079-15980098 | Msa0010550:intron | 55.0% | |
| GTGAATGGCATGGCATGGCA+TGG | - | chr1_1:15980201-15980220 | Msa0010550:intron | 55.0% | |
| CCCTCCCTCCCACTTATGTT+TGG | + | chr1_1:15980599-15980618 | None:intergenic | 55.0% | |
| ! | GGCTTTGATTGGGGCAGAAG+AGG | + | chr1_1:15981395-15981414 | None:intergenic | 55.0% |
| CAGCTACCTCTGCAGTTCAG+AGG | + | chr1_1:15981488-15981507 | None:intergenic | 55.0% | |
| CTGAACTGCAGAGGTAGCTG+AGG | - | chr1_1:15981488-15981507 | Msa0010550:intron | 55.0% | |
| GCAACGCACGAGCAATACCA+AGG | + | chr1_1:15981869-15981888 | None:intergenic | 55.0% | |
| CTGGGGAGAGAGAGAGTGGT+TGG | + | chr1_1:15975144-15975163 | None:intergenic | 60.0% | |
| !! | GGTTCTGGGGAGAGAGAGAG+TGG | + | chr1_1:15975148-15975167 | None:intergenic | 60.0% |
| GCGAGAGAGGGAGAAGGTTC+TGG | + | chr1_1:15975163-15975182 | None:intergenic | 60.0% | |
| !! | AGCGATTTCGGGTTCGGCAG+GGG | + | chr1_1:15975232-15975251 | None:intergenic | 60.0% |
| !! | CAGCGATTTCGGGTTCGGCA+GGG | + | chr1_1:15975233-15975252 | None:intergenic | 60.0% |
| !! | TCAGCGATTTCGGGTTCGGC+AGG | + | chr1_1:15975234-15975253 | None:intergenic | 60.0% |
| TTGTCATCGGGTGGGTGTGG+TGG | - | chr1_1:15978120-15978139 | Msa0010550:intron | 60.0% | |
| !! | GTGTGGTGGTGGTCGAAGCA+TGG | - | chr1_1:15978134-15978153 | Msa0010550:intron | 60.0% |
| GTGGTGGTCGAAGCATGGTG+AGG | - | chr1_1:15978139-15978158 | Msa0010550:intron | 60.0% | |
| !! | CGATCTGGCGGTTTTGGTGG+CGG | - | chr1_1:15978207-15978226 | Msa0010550:intron | 60.0% |
| ! | GGTGGAGGCATGCTGCATTC+CGG | - | chr1_1:15978228-15978247 | Msa0010550:intron | 60.0% |
| AAGGCCCAGCTCTCACATGG+TGG | + | chr1_1:15978830-15978849 | None:intergenic | 60.0% | |
| GCGCGAGAGTTGCAAGTGAG+AGG | - | chr1_1:15980071-15980090 | Msa0010550:intron | 60.0% | |
| GAGGGAGTTGCGAGCAGTGA+TGG | - | chr1_1:15980116-15980135 | Msa0010550:intron | 60.0% | |
| GGAGTTGCGAGCAGTGATGG+TGG | - | chr1_1:15980119-15980138 | Msa0010550:intron | 60.0% | |
| ! | GCAGTTCAGAGGTTGGCCGT+TGG | + | chr1_1:15981477-15981496 | None:intergenic | 60.0% |
| GGCCAACCTCTGAACTGCAG+AGG | - | chr1_1:15981479-15981498 | Msa0010550:intron | 60.0% | |
| TGGCCTCTCTGGTCAAGCTC+AGG | - | chr1_1:15981836-15981855 | Msa0010550:intron | 60.0% | |
| TCGCCTGAGCTTGACCAGAG+AGG | + | chr1_1:15981842-15981861 | None:intergenic | 60.0% | |
| CAAGCTCAGGCGATCACCCT+TGG | - | chr1_1:15981849-15981868 | Msa0010550:intron | 60.0% | |
| GGGAGAGCGAGAGAGGGAGA+AGG | + | chr1_1:15975169-15975188 | None:intergenic | 65.0% | |
| TCATCGGGTGGGTGTGGTGG+TGG | - | chr1_1:15978123-15978142 | Msa0010550:intron | 65.0% | |
| !!! | TCTGGCGGTTTTGGTGGCGG+TGG | - | chr1_1:15978210-15978229 | Msa0010550:intron | 65.0% |
| TGGAATGATCGCAGCGGCGC+CGG | + | chr1_1:15978250-15978269 | None:intergenic | 65.0% | |
| !! | CGGAAGTGCTTCGCTCGCCT+CGG | - | chr1_1:15978497-15978516 | Msa0010550:intron | 65.0% |
| !! | GTGTGGACTGGGACTGGCCA+TGG | + | chr1_1:15980286-15980305 | None:intergenic | 65.0% |
| !! | AGCCACGTGTGGACTGGGAC+TGG | + | chr1_1:15980292-15980311 | None:intergenic | 65.0% |
| ! | TTCAGTGGCGGAGCCACGTG+TGG | + | chr1_1:15980303-15980322 | None:intergenic | 65.0% |
| !!! | GGCGGTTTTGGTGGCGGTGG+AGG | - | chr1_1:15978213-15978232 | Msa0010550:intron | 70.0% |
| GGCCAGTCCCAGTCCACACG+TGG | - | chr1_1:15980287-15980306 | Msa0010550:intron | 70.0% | |
| GGCGGAGCCACGTGTGGACT+GGG | + | chr1_1:15980297-15980316 | None:intergenic | 70.0% | |
| TGGCGGAGCCACGTGTGGAC+TGG | + | chr1_1:15980298-15980317 | None:intergenic | 70.0% | |
| ! | GCTGAGGGTGGTGGCCTCTC+TGG | - | chr1_1:15981825-15981844 | Msa0010550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 15975069 | 15982443 | 15975069 | ID=Msa0010550;Name=Msa0010550 |
| chr1_1 | mRNA | 15975069 | 15982443 | 15975069 | ID=Msa0010550-mRNA-1;Parent=Msa0010550;Name=Msa0010550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|0|0.33|3|424|189 |
| chr1_1 | exon | 15975069 | 15975780 | 15975069 | ID=Msa0010550-mRNA-1:exon:5820;Parent=Msa0010550-mRNA-1 |
| chr1_1 | exon | 15982114 | 15982151 | 15982114 | ID=Msa0010550-mRNA-1:exon:5819;Parent=Msa0010550-mRNA-1 |
| chr1_1 | exon | 15982200 | 15982443 | 15982200 | ID=Msa0010550-mRNA-1:exon:5818;Parent=Msa0010550-mRNA-1 |
| chr1_1 | CDS | 15982200 | 15982443 | 15982200 | ID=Msa0010550-mRNA-1:cds;Parent=Msa0010550-mRNA-1 |
| chr1_1 | CDS | 15982114 | 15982151 | 15982114 | ID=Msa0010550-mRNA-1:cds;Parent=Msa0010550-mRNA-1 |
| chr1_1 | CDS | 15975493 | 15975780 | 15975493 | ID=Msa0010550-mRNA-1:cds;Parent=Msa0010550-mRNA-1 |
| chr1_1 | three_prime_UTR | 15975069 | 15975492 | 15975069 | ID=Msa0010550-mRNA-1:three_prime_utr;Parent=Msa0010550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
