AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051010 MtrunA17_Chr1g0154431 89.756 205 5 1 1 189 1 205 4.33e-128 358
Msa0051010 MtrunA17_Chr3g0118021 43.750 112 54 4 82 189 299 405 1.53e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051010 AT1G74970.1 66.505 206 49 2 4 189 3 208 6.59e-85 249
Msa0051010 AT3G49080.1 42.857 112 55 4 82 189 324 430 4.30e-14 70.1

Find 81 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTATCTGTAAAATTTC+TGG 0.180911 1_2:+5062352 Msa0051010:three_prime_UTR
GGTTGGTTTGGAAGAGATTT+TGG 0.195951 1_2:-5055132 Msa0051000:CDS
TACAGTGAGAGAATGGAATT+TGG 0.236598 1_2:-5055195 Msa0051000:CDS
TACTATGTTGAAGGTTTCTT+TGG 0.252502 1_2:+5062228 Msa0051010:three_prime_UTR
GCGAGAGAGGGAGAAGGTTC+TGG 0.263181 1_2:-5055168 Msa0051000:CDS
TCCATACTGGCAAAATAATA+AGG 0.283512 1_2:-5062162 None:intergenic
TTCGTATCCCAAAGTTAATA+AGG 0.290144 1_2:-5061786 None:intergenic
GAGGAAATAACATATATTTC+AGG 0.295972 1_2:-5062254 None:intergenic
GAGAGAGAGAGTGGTTGGTT+TGG 0.310741 1_2:-5055144 Msa0051000:CDS
TTCACTGAGGCCTTTGTATT+CGG 0.318413 1_2:+5062122 Msa0051010:three_prime_UTR
AAACCTTCAACATAGTAAAA+AGG 0.337469 1_2:-5062222 None:intergenic
TTCCCTGTATCTCTGTAGTT+TGG 0.342025 1_2:+5062066 Msa0051010:three_prime_UTR
TAAGGTGCCCTTATTAACTT+TGG 0.349914 1_2:+5061778 Msa0051010:CDS
GCTGAGGGTGGTGGCCTCTC+TGG 0.350070 1_2:+5061833 Msa0051010:CDS
GCTATGGCTTCAATACATTA+AGG 0.364577 1_2:+5061760 Msa0051010:CDS
CTGGGGAGAGAGAGAGTGGT+TGG 0.367992 1_2:-5055149 Msa0051000:CDS
TCAGCGATTTCGGGTTCGGC+AGG 0.386590 1_2:-5055239 Msa0051000:intron
TACGTTAAATCTAGACTTCC+TGG 0.389969 1_2:+5055272 Msa0051010:CDS
GGAAGATGTGAGAGATGATA+AGG 0.391926 1_2:-5055087 Msa0051000:CDS
GTTTCGGAACTATTGATTGT+AGG 0.392267 1_2:+5062098 Msa0051010:three_prime_UTR
GAGGTCAGCGATTTCGGGTT+CGG 0.399549 1_2:-5055243 Msa0051000:intron
CGAGAGAGGGAGAAGGTTCT+GGG 0.402856 1_2:-5055167 Msa0051000:CDS
TAACCAAACTACAGAGATAC+AGG 0.405060 1_2:-5062069 None:intergenic
AGTTTGGTTACTTTCAGTTT+CGG 0.405516 1_2:+5062082 Msa0051010:three_prime_UTR
ACAGTGAGAGAATGGAATTT+GGG 0.409706 1_2:-5055194 Msa0051000:CDS
AGATACAGGGAAGAATAAAA+AGG 0.410538 1_2:-5062055 None:intergenic
TACATTTCCCAATTCCATAC+TGG 0.423204 1_2:-5062175 None:intergenic
TCGTATCCCAAAGTTAATAA+GGG 0.423632 1_2:-5061785 None:intergenic
ATCTGTAAAATTTCTGGAGA+TGG 0.437955 1_2:+5062358 Msa0051010:three_prime_UTR
AAGGTGCCCTTATTAACTTT+GGG 0.444377 1_2:+5061779 Msa0051010:CDS
AGCGATTTCGGGTTCGGCAG+GGG 0.451024 1_2:-5055237 Msa0051000:intron
GGAATTTGGGAGAGCGAGAG+AGG 0.451858 1_2:-5055181 Msa0051000:CDS
TTGCAGTTACAGTGAGAGAA+TGG 0.456873 1_2:-5055202 Msa0051000:CDS
GGTTCTGGGGAGAGAGAGAG+TGG 0.468084 1_2:-5055153 Msa0051000:CDS
CTCAATATTCTAAACGTTGA+GGG 0.468618 1_2:+5062008 Msa0051010:CDS
TGGCCTCTCTGGTCAAGCTC+AGG 0.474396 1_2:+5061844 Msa0051010:CDS
CAAAATAATAAGGAAACAAA+GGG 0.488587 1_2:-5062152 None:intergenic
GGAGAAGGAGAGTGAAGAGA+GGG 0.500055 1_2:-5055108 Msa0051000:CDS
GTTGTACAGGAATATCTTCA+AGG 0.503982 1_2:+5061731 Msa0051010:intron
GCAAAATAATAAGGAAACAA+AGG 0.505814 1_2:-5062153 None:intergenic
CAAGCTCAGGCGATCACCCT+TGG 0.506389 1_2:+5061857 Msa0051010:CDS
AGTATGGAATTGGGAAATGT+AGG 0.512865 1_2:+5062177 Msa0051010:three_prime_UTR
TACACACAATCAATTAAAAG+AGG 0.518003 1_2:-5062273 None:intergenic
CATTAATTACCGTGATGCTA+AGG 0.519189 1_2:+5055385 Msa0051010:CDS
CCTCAACGTTTAGAATATTG+AGG 0.522813 1_2:-5062007 None:intergenic
CAGCGATTTCGGGTTCGGCA+GGG 0.530065 1_2:-5055238 Msa0051000:intron
TTTGGGAATGCTACACACCT+TGG 0.531838 1_2:-5062430 None:intergenic
GAATTTGGGAGAGCGAGAGA+GGG 0.540387 1_2:-5055180 Msa0051000:CDS
AGGAGAAGGAGAGTGAAGAG+AGG 0.540862 1_2:-5055109 Msa0051000:CDS
GTTTGAGCAGCGAATCCACC+AGG 0.551516 1_2:-5055290 Msa0051000:intron
TTCGCTGCTCAAACTATCAT+CGG 0.553571 1_2:+5055299 Msa0051010:CDS
GGGAGAGCGAGAGAGGGAGA+AGG 0.555061 1_2:-5055174 Msa0051000:CDS
AGAAGCCCTTGTTGTCTCAA+AGG 0.556232 1_2:-5061923 None:intergenic
CCTCAATATTCTAAACGTTG+AGG 0.561139 1_2:+5062007 Msa0051010:CDS
TATTGCTCGTGCGTTGCTGA+AGG 0.576175 1_2:+5061880 Msa0051010:CDS
ATTTCTGGAGATGGTTGTTG+TGG 0.577273 1_2:+5062367 Msa0051010:three_prime_UTR
GCTGTTGAGAGGAAGAAAGT+TGG 0.577966 1_2:+5061962 Msa0051010:CDS
ATCTTCAAGGAAATCCGCTA+TGG 0.582748 1_2:+5061744 Msa0051010:CDS
ATGAATAAACCTTAGCATCA+CGG 0.583868 1_2:-5055394 Msa0051000:intron
TATAGTGTACACATGGTACA+AGG 0.587250 1_2:-5062390 None:intergenic
ATAATAAGGAAACAAAGGGC+AGG 0.589334 1_2:-5062148 None:intergenic
GTGTTTGTGAAAGCTGAGGG+TGG 0.596769 1_2:+5061821 Msa0051010:CDS
TTTGTGAAAGCTGAGGGTGG+TGG 0.605348 1_2:+5061824 Msa0051010:CDS
CATCTCAATACACTTGAACA+AGG 0.613434 1_2:-5062305 None:intergenic
GAGAGAGGGAGAAGGTTCTG+GGG 0.622430 1_2:-5055166 Msa0051000:CDS
GAGATTCTAGAGCTGTTGAG+AGG 0.623504 1_2:+5061951 Msa0051010:CDS
TGATGTGTTTGTGAAAGCTG+AGG 0.626462 1_2:+5061817 Msa0051010:CDS
AATATTCTAAACGTTGAGGG+TGG 0.633829 1_2:+5062011 Msa0051010:exon
AGAGTACCTTTGAGACAACA+AGG 0.639079 1_2:+5061917 Msa0051010:CDS
GATGTGTTTGTGAAAGCTGA+GGG 0.645465 1_2:+5061818 Msa0051010:CDS
GCAACGCACGAGCAATACCA+AGG 0.649038 1_2:-5061874 None:intergenic
TGCATGTTATAGTGTACACA+TGG 0.660660 1_2:-5062397 None:intergenic
GGGCAGGATTCCGAATACAA+AGG 0.665424 1_2:-5062132 None:intergenic
GCGTTGCTGAAGGTTAGTGA+AGG 0.671877 1_2:+5061890 Msa0051010:CDS
AACCAAACTACAGAGATACA+GGG 0.685063 1_2:-5062068 None:intergenic
GTTAAATCTAGACTTCCTGG+TGG 0.707157 1_2:+5055275 Msa0051010:CDS
ATTGATTGTAGGTTTCACTG+AGG 0.707639 1_2:+5062109 Msa0051010:three_prime_UTR
CAACGCACGAGCAATACCAA+GGG 0.707901 1_2:-5061873 None:intergenic
GAGTACCTTTGAGACAACAA+GGG 0.708894 1_2:+5061918 Msa0051010:CDS
TCGCCTGAGCTTGACCAGAG+AGG 0.719687 1_2:-5061847 None:intergenic
TTAATGTATTGAAGCCATAG+CGG 0.725178 1_2:-5061758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACATTTTGTAAATTTTTA+AGG - chr1_2:5059665-5059684 None:intergenic 10.0%
!! TATCATTTAACATTATTGTA+AGG + chr1_2:5057949-5057968 Msa0051010:intron 15.0%
!! TGAAAATATAACTTATAGTT+AGG + chr1_2:5059992-5060011 Msa0051010:intron 15.0%
!! GAAAATATAACTTATAGTTA+GGG + chr1_2:5059993-5060012 Msa0051010:intron 15.0%
!! TAGAATAAAAAGTGAAATAA+TGG + chr1_2:5060689-5060708 Msa0051010:intron 15.0%
!! TTATTCATCCAAAAAATATA+AGG + chr1_2:5061368-5061387 Msa0051010:intron 15.0%
!! ACGTTAAGAAAATTATAATG+TGG + chr1_2:5055499-5055518 Msa0051010:intron 20.0%
!! AGAAAATTATAATGTGGTAT+TGG + chr1_2:5055505-5055524 Msa0051010:intron 20.0%
!! TCTCTTAATCTTCTATAAAA+GGG - chr1_2:5055941-5055960 Msa0051000:intron 20.0%
!! TTCTCTTAATCTTCTATAAA+AGG - chr1_2:5055942-5055961 Msa0051000:intron 20.0%
!! ATACAACATAGAAATGAAAT+AGG + chr1_2:5056478-5056497 Msa0051010:intron 20.0%
!! AATAAAAACAACACATGTTT+GGG + chr1_2:5056621-5056640 Msa0051010:intron 20.0%
!! AAGGAAAATCAAGAAAAATA+TGG + chr1_2:5056854-5056873 Msa0051010:intron 20.0%
!! AGAAAATAAGGCAATTAAAA+TGG + chr1_2:5057074-5057093 Msa0051010:intron 20.0%
!!! TAAGGTTTATCATTGTTATT+AGG - chr1_2:5057212-5057231 Msa0051000:CDS 20.0%
!! TAACAGATGTATTGAATTTA+AGG - chr1_2:5057230-5057249 Msa0051000:CDS 20.0%
!! TTTGATACATTGATATCTTA+TGG + chr1_2:5057337-5057356 Msa0051010:intron 20.0%
!!! AAATTCTGGTTTTGATATAT+GGG - chr1_2:5057746-5057765 Msa0051000:CDS 20.0%
!! TCTCTTAATCTTCTATAAAA+GGG - chr1_2:5055941-5055960 Msa0051000:intron 20.0%
!! TTCTCTTAATCTTCTATAAA+AGG - chr1_2:5055942-5055961 Msa0051000:intron 20.0%
!! ATTGAGAAAATAATCTCAAA+TGG + chr1_2:5059451-5059470 Msa0051010:intron 20.0%
!!! TATTGATTCAATTAAAGAGA+AGG - chr1_2:5059712-5059731 None:intergenic 20.0%
!!! ATTTGAGTGATTTTTTGATT+TGG - chr1_2:5059887-5059906 None:intergenic 20.0%
!! AGTATGATTCAAAAACTTAA+GGG + chr1_2:5059944-5059963 Msa0051010:intron 20.0%
!! AGTAATATTAAAATTAGCTC+AGG + chr1_2:5060233-5060252 Msa0051010:intron 20.0%
!! GTAATATTAAAATTAGCTCA+GGG + chr1_2:5060234-5060253 Msa0051010:intron 20.0%
!! TAATATTAAAATTAGCTCAG+GGG + chr1_2:5060235-5060254 Msa0051010:intron 20.0%
!!! TAGTCTTTTCATAGAATAAA+TGG + chr1_2:5060263-5060282 Msa0051010:intron 20.0%
!!! AGTCTTTTCATAGAATAAAT+GGG + chr1_2:5060264-5060283 Msa0051010:intron 20.0%
!!! AAATTTCATCTTTTATTCAG+TGG - chr1_2:5060326-5060345 None:intergenic 20.0%
!! TTAAATTATGAAGAGTAACT+GGG + chr1_2:5060510-5060529 Msa0051010:intron 20.0%
!!! TTGAAGATCCTTATATTTTT+TGG - chr1_2:5061379-5061398 None:intergenic 20.0%
!! AAGAAATCAAAGAAAATGTT+TGG - chr1_2:5061626-5061645 None:intergenic 20.0%
!!! TTTAGATTTTAATGTTGTAC+AGG + chr1_2:5061718-5061737 Msa0051010:intron 20.0%
!! CAAAATAATAAGGAAACAAA+GGG - chr1_2:5062155-5062174 None:intergenic 20.0%
!! TAGATTTAACGTATGTTTTG+AGG - chr1_2:5055265-5055284 Msa0051000:intron 25.0%
!! TATAATGTGGTATTGGATTT+AGG + chr1_2:5055512-5055531 Msa0051010:intron 25.0%
!! ATAATGTGGTATTGGATTTA+GGG + chr1_2:5055513-5055532 Msa0051010:intron 25.0%
!!! GTTGAGTTGAGTTTTTTTTA+CGG + chr1_2:5055630-5055649 Msa0051010:intron 25.0%
! TTGATGTTCTTAGTACATAA+AGG + chr1_2:5055810-5055829 Msa0051010:intron 25.0%
! TCTTAGTACATAAAGGATAA+AGG + chr1_2:5055817-5055836 Msa0051010:intron 25.0%
! TAGAATTATCCCTTAATTGT+TGG + chr1_2:5055973-5055992 Msa0051010:intron 25.0%
! ATTAAAGTGGAATCAACAAT+TGG - chr1_2:5056028-5056047 Msa0051000:intron 25.0%
!!! GCTATTTTTTCCATATCAAA+AGG - chr1_2:5056210-5056229 Msa0051000:intron 25.0%
! TTACTAAAGAGACTAGAATA+TGG + chr1_2:5056523-5056542 Msa0051010:intron 25.0%
!!! ACATGTGTTGTTTTTATTGT+TGG - chr1_2:5056619-5056638 Msa0051000:CDS 25.0%
! CAATAAAAACAACACATGTT+TGG + chr1_2:5056620-5056639 Msa0051010:intron 25.0%
! CATATTGTGCATTCATAATA+TGG - chr1_2:5057490-5057509 Msa0051000:CDS 25.0%
!!! CAAATTCTGGTTTTGATATA+TGG - chr1_2:5057747-5057766 Msa0051000:CDS 25.0%
! TATATCAAAACCAGAATTTG+TGG + chr1_2:5057747-5057766 Msa0051010:intron 25.0%
!!! AATTTTTGACTGCTATAAAG+GGG - chr1_2:5057799-5057818 Msa0051000:CDS 25.0%
!!! CAATTTTTGACTGCTATAAA+GGG - chr1_2:5057800-5057819 Msa0051000:CDS 25.0%
!!! TCAATTTTTGACTGCTATAA+AGG - chr1_2:5057801-5057820 Msa0051000:CDS 25.0%
! TGAGATTTCCAAATTTCATT+TGG - chr1_2:5057922-5057941 Msa0051000:CDS 25.0%
!!! CATACTTTCGTTTTATTGTT+TGG - chr1_2:5058090-5058109 Msa0051000:CDS 25.0%
! CAAACAATAAAACGAAAGTA+TGG + chr1_2:5058088-5058107 Msa0051010:intron 25.0%
! TTTGGAAATTTAAACCTGAA+TGG - chr1_2:5058757-5058776 None:intergenic 25.0%
!! ATTCAGGTTTAAATTTCCAA+AGG + chr1_2:5058756-5058775 Msa0051010:intron 25.0%
! ATTGTGAAATTGATGCTTAT+TGG - chr1_2:5058943-5058962 None:intergenic 25.0%
!!! CAATTTTGAGATCATTACAT+TGG - chr1_2:5059028-5059047 None:intergenic 25.0%
! TTGATGTTCTTAGTACATAA+AGG + chr1_2:5055810-5055829 Msa0051010:intron 25.0%
! TCTTAGTACATAAAGGATAA+AGG + chr1_2:5055817-5055836 Msa0051010:intron 25.0%
! TAGAATTATCCCTTAATTGT+TGG + chr1_2:5055973-5055992 Msa0051010:intron 25.0%
! ATTAAAGTGGAATCAACAAT+TGG - chr1_2:5056028-5056047 Msa0051000:intron 25.0%
! TATATTTGGATCATAACAGA+TGG + chr1_2:5059377-5059396 Msa0051010:intron 25.0%
! TATTTCAAAAGGGTTTGATT+AGG + chr1_2:5059838-5059857 Msa0051010:intron 25.0%
! CAGTATGATTCAAAAACTTA+AGG + chr1_2:5059943-5059962 Msa0051010:intron 25.0%
! TTCAAAAACTTAAGGGAAAA+AGG + chr1_2:5059951-5059970 Msa0051010:intron 25.0%
! TAACTTATAGTTAGGGTTTA+TGG + chr1_2:5060000-5060019 Msa0051010:intron 25.0%
! AAAGAAAAACAAAATGAGAG+AGG + chr1_2:5060178-5060197 Msa0051010:intron 25.0%
! AAGAAAAACAAAATGAGAGA+GGG + chr1_2:5060179-5060198 Msa0051010:intron 25.0%
!! TTTTCATAGAATAAATGGGT+AGG + chr1_2:5060268-5060287 Msa0051010:intron 25.0%
! GTTAAATTATGAAGAGTAAC+TGG + chr1_2:5060509-5060528 Msa0051010:intron 25.0%
! TGATCTTCCAAAAAAACATA+AGG + chr1_2:5060572-5060591 Msa0051010:intron 25.0%
! ATGACAATCTAATGAAATAC+AGG - chr1_2:5060834-5060853 None:intergenic 25.0%
! TGATCATCCAAAAAAACATA+AGG + chr1_2:5060990-5061009 Msa0051010:intron 25.0%
!! ACACTTATAATCTAAAGTCT+CGG - chr1_2:5061154-5061173 None:intergenic 25.0%
! GCAAAATAATAAGGAAACAA+AGG - chr1_2:5062156-5062175 None:intergenic 25.0%
!! CATAGTAAAAAGGTGTATTT+GGG - chr1_2:5062215-5062234 None:intergenic 25.0%
!! ACATAGTAAAAAGGTGTATT+TGG - chr1_2:5062216-5062235 None:intergenic 25.0%
! AAACCTTCAACATAGTAAAA+AGG - chr1_2:5062225-5062244 None:intergenic 25.0%
! GAGGAAATAACATATATTTC+AGG - chr1_2:5062257-5062276 None:intergenic 25.0%
! TACACACAATCAATTAAAAG+AGG - chr1_2:5062276-5062295 None:intergenic 25.0%
! TCAACTATCTGTAAAATTTC+TGG + chr1_2:5062352-5062371 Msa0051010:three_prime_UTR 25.0%
ATGAATAAACCTTAGCATCA+CGG - chr1_2:5055397-5055416 Msa0051000:intron 30.0%
GTGAATAAGTTAATGCTGAA+AGG + chr1_2:5055566-5055585 Msa0051010:intron 30.0%
!!! TGCTGAAAGGTTTTGTTAAT+TGG + chr1_2:5055579-5055598 Msa0051010:intron 30.0%
!!! AGTTGAGTTTTTTTTACGGA+TGG + chr1_2:5055634-5055653 Msa0051010:intron 30.0%
TTAGAAAGGAATAAAAGCAG+TGG + chr1_2:5055663-5055682 Msa0051010:intron 30.0%
TCACTTGATCCAACAATTAA+GGG - chr1_2:5055985-5056004 Msa0051000:intron 30.0%
CAACAATTGGTTAGAGAAAA+GGG - chr1_2:5056015-5056034 Msa0051000:intron 30.0%
TCAACAATTGGTTAGAGAAA+AGG - chr1_2:5056016-5056035 Msa0051000:intron 30.0%
TTGATTCCACTTTAATGACT+TGG + chr1_2:5056032-5056051 Msa0051010:intron 30.0%
!! AGGACAAGGTTGATTTTAAT+GGG - chr1_2:5056091-5056110 Msa0051000:intron 30.0%
GATATGGAAAAAATAGCCAA+CGG + chr1_2:5056213-5056232 Msa0051010:intron 30.0%
ATGTTAGAAGTGAAACATTG+CGG + chr1_2:5056253-5056272 Msa0051010:intron 30.0%
TGTATTGCAAAGAATGCTTA+TGG - chr1_2:5056463-5056482 Msa0051000:CDS 30.0%
CAACATAGAAATGAAATAGG+TGG + chr1_2:5056481-5056500 Msa0051010:intron 30.0%
TATGTTGAAGTGAATTGGTT+TGG - chr1_2:5056580-5056599 Msa0051000:CDS 30.0%
ATGGTTATGTTGAAGTGAAT+TGG - chr1_2:5056585-5056604 Msa0051000:CDS 30.0%
!!! TGTGTTGTTTTTATTGTTGG+TGG - chr1_2:5056616-5056635 Msa0051000:CDS 30.0%
TGGGCATTAAAGAAGAAAAT+TGG + chr1_2:5056640-5056659 Msa0051010:intron 30.0%
!!! TGTTATTTTGGATGAGACTA+CGG - chr1_2:5056711-5056730 Msa0051000:CDS 30.0%
TTCATAATTCCCTTATCAGA+AGG + chr1_2:5056835-5056854 Msa0051010:intron 30.0%
! CTTGATTTTCCTTCTGATAA+GGG - chr1_2:5056847-5056866 Msa0051000:CDS 30.0%
! TCTTGATTTTCCTTCTGATA+AGG - chr1_2:5056848-5056867 Msa0051000:CDS 30.0%
! GATTAATGAGGCGTTTAATT+GGG - chr1_2:5056926-5056945 Msa0051000:CDS 30.0%
! GTTTATAATGCTTTTGTCCT+GGG - chr1_2:5056967-5056986 Msa0051000:CDS 30.0%
! AGTTTATAATGCTTTTGTCC+TGG - chr1_2:5056968-5056987 Msa0051000:CDS 30.0%
TCTATGATATTTGCACTTGT+GGG - chr1_2:5056994-5057013 Msa0051000:CDS 30.0%
ATCTATGATATTTGCACTTG+TGG - chr1_2:5056995-5057014 Msa0051000:CDS 30.0%
AGAGGTGAATGAAGAAAATA+AGG + chr1_2:5057062-5057081 Msa0051010:intron 30.0%
AACTTATGTCTTGGAATTCA+TGG - chr1_2:5057291-5057310 Msa0051000:CDS 30.0%
TCTATTCTCAACTTATGTCT+TGG - chr1_2:5057300-5057319 Msa0051000:CDS 30.0%
! AAGACATAAGTTGAGAATAG+AGG + chr1_2:5057299-5057318 Msa0051010:intron 30.0%
!! CAAATTCTCTGAAACATCAA+AGG - chr1_2:5057364-5057383 Msa0051000:CDS 30.0%
AGATGTTTCAATTCAAGAGT+TGG - chr1_2:5057403-5057422 Msa0051000:CDS 30.0%
CCACTATACTCTGTTATAAT+TGG - chr1_2:5057426-5057445 Msa0051000:CDS 30.0%
CCAATTATAACAGAGTATAG+TGG + chr1_2:5057423-5057442 Msa0051010:intron 30.0%
!! AAGAATTATTGTTGGTGGTA+AGG - chr1_2:5057601-5057620 Msa0051000:CDS 30.0%
GTGTTAAGAATTATTGTTGG+TGG - chr1_2:5057606-5057625 Msa0051000:CDS 30.0%
! TACGAATTTAGCTTATGCTT+GGG - chr1_2:5057676-5057695 Msa0051000:CDS 30.0%
GTACAAGTATTACAGTGTAT+GGG - chr1_2:5057864-5057883 Msa0051000:CDS 30.0%
TGTACAAGTATTACAGTGTA+TGG - chr1_2:5057865-5057884 Msa0051000:CDS 30.0%
TTCCAAATTTCATTTGGCAT+TGG - chr1_2:5057916-5057935 Msa0051000:CDS 30.0%
TGGAAAAATGTCAGTGTTAA+CGG - chr1_2:5058041-5058060 Msa0051000:CDS 30.0%
GAAATTTAAACCTGAATGGA+GGG - chr1_2:5058753-5058772 None:intergenic 30.0%
CAGAAAAATACTTCAAGCAA+TGG - chr1_2:5058907-5058926 None:intergenic 30.0%
TGAAATTGATGCTTATTGGT+GGG - chr1_2:5058939-5058958 None:intergenic 30.0%
TCAATTTCACAATCAAACAC+CGG + chr1_2:5058950-5058969 Msa0051010:intron 30.0%
AATTTCAAAGATGGTGATTC+CGG - chr1_2:5058972-5058991 None:intergenic 30.0%
!! CATCTTTGAAATTGGTTTAG+CGG + chr1_2:5058979-5058998 Msa0051010:intron 30.0%
!! ATCTTTGAAATTGGTTTAGC+GGG + chr1_2:5058980-5058999 Msa0051010:intron 30.0%
TCACTTGATCCAACAATTAA+GGG - chr1_2:5055985-5056004 Msa0051000:intron 30.0%
CAACAATTGGTTAGAGAAAA+GGG - chr1_2:5056015-5056034 Msa0051000:intron 30.0%
TCAACAATTGGTTAGAGAAA+AGG - chr1_2:5056016-5056035 Msa0051000:intron 30.0%
TTGATTCCACTTTAATGACT+TGG + chr1_2:5056032-5056051 Msa0051010:intron 30.0%
! AAGAGTCTCATTCATCATTT+TGG - chr1_2:5059406-5059425 None:intergenic 30.0%
TATTGTTCAACACTATGAAG+AGG - chr1_2:5059566-5059585 None:intergenic 30.0%
AAGGAATATGACAAAAATGC+AGG - chr1_2:5059792-5059811 None:intergenic 30.0%
! ACAGGTTTGGTTATTTCAAA+AGG + chr1_2:5059827-5059846 Msa0051010:intron 30.0%
! CAGGTTTGGTTATTTCAAAA+GGG + chr1_2:5059828-5059847 Msa0051010:intron 30.0%
AAAAGGGTTTGATTAGGTTA+TGG + chr1_2:5059844-5059863 Msa0051010:intron 30.0%
TTAGGTTATGGAGAAATTGA+AGG + chr1_2:5059856-5059875 Msa0051010:intron 30.0%
! GTTTTTGAATCATACTGTGT+TGG - chr1_2:5059940-5059959 None:intergenic 30.0%
! TTTCATCTTTTATTCAGTGG+CGG - chr1_2:5060323-5060342 None:intergenic 30.0%
TTGGAAGATCAATACTACAT+TGG - chr1_2:5060563-5060582 None:intergenic 30.0%
TCTTCCAAAAAAACATAAGG+AGG + chr1_2:5060575-5060594 Msa0051010:intron 30.0%
!!! ACAACCTCCTTATGTTTTTT+TGG - chr1_2:5060582-5060601 None:intergenic 30.0%
GCATTGAGACTTTAGATTAT+AGG + chr1_2:5060726-5060745 Msa0051010:intron 30.0%
TTGGATGATCAATACTACAT+TGG - chr1_2:5060981-5061000 None:intergenic 30.0%
!!! AGAAGCTCCTTATGTTTTTT+TGG - chr1_2:5061000-5061019 None:intergenic 30.0%
CTTTAGATTATAAGTGTGTC+CGG + chr1_2:5061157-5061176 Msa0051010:intron 30.0%
TTGGATGAATAACACTACAT+TGG - chr1_2:5061360-5061379 None:intergenic 30.0%
AATTGAATTCATCCAATGAC+TGG - chr1_2:5061424-5061443 None:intergenic 30.0%
! TTTCTTTGATTTCTTTCCAC+TGG + chr1_2:5061631-5061650 Msa0051010:intron 30.0%
TTAATGTATTGAAGCCATAG+CGG - chr1_2:5061761-5061780 None:intergenic 30.0%
TCGTATCCCAAAGTTAATAA+GGG - chr1_2:5061788-5061807 None:intergenic 30.0%
TTCGTATCCCAAAGTTAATA+AGG - chr1_2:5061789-5061808 None:intergenic 30.0%
CTCAATATTCTAAACGTTGA+GGG + chr1_2:5062008-5062027 Msa0051010:CDS 30.0%
AGATACAGGGAAGAATAAAA+AGG - chr1_2:5062058-5062077 None:intergenic 30.0%
! AGTTTGGTTACTTTCAGTTT+CGG + chr1_2:5062082-5062101 Msa0051010:three_prime_UTR 30.0%
!! TCCTTATTATTTTGCCAGTA+TGG + chr1_2:5062161-5062180 Msa0051010:three_prime_UTR 30.0%
TCCATACTGGCAAAATAATA+AGG - chr1_2:5062165-5062184 None:intergenic 30.0%
!! TTATTTTGCCAGTATGGAAT+TGG + chr1_2:5062167-5062186 Msa0051010:three_prime_UTR 30.0%
! TATTTTGCCAGTATGGAATT+GGG + chr1_2:5062168-5062187 Msa0051010:three_prime_UTR 30.0%
! TAAAAAGGTGTATTTGGGTT+GGG - chr1_2:5062210-5062229 None:intergenic 30.0%
! ACACCTTTTTACTATGTTGA+AGG + chr1_2:5062219-5062238 Msa0051010:three_prime_UTR 30.0%
TACTATGTTGAAGGTTTCTT+TGG + chr1_2:5062228-5062247 Msa0051010:three_prime_UTR 30.0%
! ATCTGTAAAATTTCTGGAGA+TGG + chr1_2:5062358-5062377 Msa0051010:three_prime_UTR 30.0%
ACAGTGAGAGAATGGAATTT+GGG - chr1_2:5055197-5055216 Msa0051000:CDS 35.0%
TACAGTGAGAGAATGGAATT+TGG - chr1_2:5055198-5055217 Msa0051000:CDS 35.0%
TACGTTAAATCTAGACTTCC+TGG + chr1_2:5055272-5055291 Msa0051010:CDS 35.0%
CATTAATTACCGTGATGCTA+AGG + chr1_2:5055385-5055404 Msa0051010:CDS 35.0%
! TTACACCATCCCAAACTTTT+TGG - chr1_2:5055699-5055718 Msa0051000:intron 35.0%
CAATGGTTAACAAGAAGGAT+AGG - chr1_2:5055916-5055935 Msa0051000:intron 35.0%
TCTTCTATAAAAGGGAGCAA+TGG - chr1_2:5055933-5055952 Msa0051000:intron 35.0%
GTCACTTGATCCAACAATTA+AGG - chr1_2:5055986-5056005 Msa0051000:intron 35.0%
!! GACTTGGCTTTGCTTATATT+TGG + chr1_2:5056048-5056067 Msa0051010:intron 35.0%
!! ACAAGGTTGATTTTAATGGG+GGG - chr1_2:5056088-5056107 Msa0051000:intron 35.0%
!! GACAAGGTTGATTTTAATGG+GGG - chr1_2:5056089-5056108 Msa0051000:intron 35.0%
!! GGACAAGGTTGATTTTAATG+GGG - chr1_2:5056090-5056109 Msa0051000:intron 35.0%
!! GAGGACAAGGTTGATTTTAA+TGG - chr1_2:5056092-5056111 Msa0051000:intron 35.0%
TAAAATCAACCTTGTCCTCA+AGG + chr1_2:5056093-5056112 Msa0051010:intron 35.0%
ATAAAGTAGCAACTTCCACA+TGG + chr1_2:5056140-5056159 Msa0051010:intron 35.0%
!! TGGATGTTTTATTGTCCATG+TGG - chr1_2:5056158-5056177 Msa0051000:intron 35.0%
!! ACTCTAAGGACCTTTTGATA+TGG + chr1_2:5056197-5056216 Msa0051010:intron 35.0%
!!! GTGTTTTTGATTTCAACCGT+TGG - chr1_2:5056232-5056251 Msa0051000:intron 35.0%
GCAATGTTTCACTTCTAACA+TGG - chr1_2:5056254-5056273 Msa0051000:intron 35.0%
TGACTCATCTATTGATGTCA+GGG - chr1_2:5056327-5056346 Msa0051000:CDS 35.0%
ATGACTCATCTATTGATGTC+AGG - chr1_2:5056328-5056347 Msa0051000:CDS 35.0%
CCTAAAGTTACAAACATTGG+TGG - chr1_2:5056368-5056387 Msa0051000:CDS 35.0%
CCACCAATGTTTGTAACTTT+AGG + chr1_2:5056365-5056384 Msa0051010:intron 35.0%
TGGCCTAAAGTTACAAACAT+TGG - chr1_2:5056371-5056390 Msa0051000:CDS 35.0%
!! TATGGCTCTAAGAACTTGTT+AGG - chr1_2:5056445-5056464 Msa0051000:CDS 35.0%
GAATATGGAACTCCATCTAT+TGG + chr1_2:5056538-5056557 Msa0051010:intron 35.0%
ATCTATTGGTGCATTACTCA+GGG + chr1_2:5056552-5056571 Msa0051010:intron 35.0%
!! ATTGTTGGTGGCTATGTTAA+TGG - chr1_2:5056604-5056623 Msa0051000:CDS 35.0%
TCAGGTTTGACAAAATGGTT+TGG - chr1_2:5056679-5056698 Msa0051000:CDS 35.0%
! GGGAATTATGAACTTGTTCA+TGG - chr1_2:5056827-5056846 Msa0051000:CDS 35.0%
GTGCATACAATGGTAGAATA+TGG - chr1_2:5056904-5056923 Msa0051000:CDS 35.0%
GTTTAATTGGGTGCATACAA+TGG - chr1_2:5056914-5056933 Msa0051000:CDS 35.0%
! GGATTAATGAGGCGTTTAAT+TGG - chr1_2:5056927-5056946 Msa0051000:CDS 35.0%
CTATGATATTTGCACTTGTG+GGG - chr1_2:5056993-5057012 Msa0051000:CDS 35.0%
TTCTTCCACTAACTGAATCT+TGG + chr1_2:5057026-5057045 Msa0051010:intron 35.0%
TCTTCCACTAACTGAATCTT+GGG + chr1_2:5057027-5057046 Msa0051010:intron 35.0%
GCAAGTCAATCTTTCAATTC+TGG - chr1_2:5057153-5057172 Msa0051000:CDS 35.0%
CTTGGAATTCATGGTAACTT+TGG - chr1_2:5057282-5057301 Msa0051000:CDS 35.0%
!! GTCTCTAGAACTATTCTCAA+AGG - chr1_2:5057468-5057487 Msa0051000:CDS 35.0%
AAGGAAATACACGGTGTAAT+GGG - chr1_2:5057582-5057601 Msa0051000:CDS 35.0%
TAAGGAAATACACGGTGTAA+TGG - chr1_2:5057583-5057602 Msa0051000:CDS 35.0%
! GGGGTGTTAAGAATTATTGT+TGG - chr1_2:5057609-5057628 Msa0051000:CDS 35.0%
! CTACGAATTTAGCTTATGCT+TGG - chr1_2:5057677-5057696 Msa0051000:CDS 35.0%
! CATTTTTGTGCCACAAATTC+TGG - chr1_2:5057760-5057779 Msa0051000:CDS 35.0%
TGCTATAAAGGGGATTTAGT+TGG - chr1_2:5057789-5057808 Msa0051000:CDS 35.0%
GGAAGAAGAAAATGCTAAAG+TGG - chr1_2:5057835-5057854 Msa0051000:CDS 35.0%
! ATTACAGTGTATGGGTTTTG+AGG - chr1_2:5057856-5057875 Msa0051000:CDS 35.0%
!! ATTTCATTTGGCATTGGTCA+AGG - chr1_2:5057910-5057929 Msa0051000:CDS 35.0%
GACCAATGCCAAATGAAATT+TGG + chr1_2:5057911-5057930 Msa0051010:intron 35.0%
! GTAAGGATTTTATGTGTGTG+AGG + chr1_2:5057966-5057985 Msa0051010:intron 35.0%
GTTTCAAATCAATGACTCCT+TGG - chr1_2:5058015-5058034 Msa0051000:CDS 35.0%
! ACACTGACATTTTTCCAAAC+AGG + chr1_2:5058044-5058063 Msa0051010:intron 35.0%
! ACATTTTTCCAAACAGGTAG+TGG + chr1_2:5058050-5058069 Msa0051010:intron 35.0%
AACTACAAATCTACTTGACG+CGG - chr1_2:5058363-5058382 Msa0051000:CDS 35.0%
! CCTTCAATTGATTTCAATGC+TGG - chr1_2:5058386-5058405 Msa0051000:CDS 35.0%
! CCAGCATTGAAATCAATTGA+AGG + chr1_2:5058383-5058402 Msa0051010:intron 35.0%
GCATTGAAATCAATTGAAGG+AGG + chr1_2:5058386-5058405 Msa0051010:intron 35.0%
TGACGATTAAATTCTTCACC+TGG + chr1_2:5058417-5058436 Msa0051010:intron 35.0%
GACGATTAAATTCTTCACCT+GGG + chr1_2:5058418-5058437 Msa0051010:intron 35.0%
GTAACAGAATGTTCCTCTAT+TGG + chr1_2:5058452-5058471 Msa0051010:intron 35.0%
! TTGCAACAGCTCAAGAATTT+TGG + chr1_2:5058544-5058563 Msa0051010:intron 35.0%
GGAAATTTAAACCTGAATGG+AGG - chr1_2:5058754-5058773 None:intergenic 35.0%
GTGAAATTGATGCTTATTGG+TGG - chr1_2:5058940-5058959 None:intergenic 35.0%
!! GGAATCACCATCTTTGAAAT+TGG + chr1_2:5058971-5058990 Msa0051010:intron 35.0%
CGCTAAACCAATTTCAAAGA+TGG - chr1_2:5058981-5059000 None:intergenic 35.0%
CAATGGTTAACAAGAAGGAT+AGG - chr1_2:5055916-5055935 Msa0051000:intron 35.0%
TCTTCTATAAAAGGGAGCAA+TGG - chr1_2:5055933-5055952 Msa0051000:intron 35.0%
GTCACTTGATCCAACAATTA+AGG - chr1_2:5055986-5056005 Msa0051000:intron 35.0%
!! GACTTGGCTTTGCTTATATT+TGG + chr1_2:5056048-5056067 Msa0051010:intron 35.0%
! AGTCTCATTCATCATTTTGG+CGG - chr1_2:5059403-5059422 None:intergenic 35.0%
TATTGTTCAGCACTATGAAG+AGG - chr1_2:5059594-5059613 None:intergenic 35.0%
CAGGTCTATACATGAAAGTA+TGG - chr1_2:5059773-5059792 None:intergenic 35.0%
TCATATTCCTTCAATCACAG+AGG + chr1_2:5059801-5059820 Msa0051010:intron 35.0%
TCTTAGCTGTTATCGTTGTT+TGG - chr1_2:5059916-5059935 None:intergenic 35.0%
GGAAAAAGGAAAATCTAACG+AGG + chr1_2:5059965-5059984 Msa0051010:intron 35.0%
AGGTTGTTAGCAAACATAAG+TGG + chr1_2:5060595-5060614 Msa0051010:intron 35.0%
GGTTGTTAGCAAACATAAGT+GGG + chr1_2:5060596-5060615 Msa0051010:intron 35.0%
!!! GGTTTTAGAAAGGAAGTGAA+AGG + chr1_2:5060625-5060644 Msa0051010:intron 35.0%
CTTTAGATTATAGGTGTGTC+CGG + chr1_2:5060735-5060754 Msa0051010:intron 35.0%
TGTGGTTACGTTCAATTTAC+TGG + chr1_2:5060798-5060817 Msa0051010:intron 35.0%
AGCTTCTTACCAAACATAAG+TGG + chr1_2:5061013-5061032 Msa0051010:intron 35.0%
GCTTCTTACCAAACATAAGT+GGG + chr1_2:5061014-5061033 Msa0051010:intron 35.0%
CACTAACATTTGTCGTATAC+CGG - chr1_2:5061179-5061198 None:intergenic 35.0%
TCTCAGTTGTTAGAATCCAA+CGG + chr1_2:5061466-5061485 Msa0051010:intron 35.0%
!! GTTTGGATGAAGAGTTTTGA+AGG - chr1_2:5061609-5061628 None:intergenic 35.0%
AGGACTAATAAGAAAACCAG+TGG - chr1_2:5061650-5061669 None:intergenic 35.0%
TGATGACAGATAGCAACATA+AGG - chr1_2:5061670-5061689 None:intergenic 35.0%
GTTGTACAGGAATATCTTCA+AGG + chr1_2:5061731-5061750 Msa0051010:intron 35.0%
GCTATGGCTTCAATACATTA+AGG + chr1_2:5061760-5061779 Msa0051010:CDS 35.0%
! TAAGGTGCCCTTATTAACTT+TGG + chr1_2:5061778-5061797 Msa0051010:CDS 35.0%
! AAGGTGCCCTTATTAACTTT+GGG + chr1_2:5061779-5061798 Msa0051010:CDS 35.0%
! CCTCAACGTTTAGAATATTG+AGG - chr1_2:5062010-5062029 None:intergenic 35.0%
CCTCAATATTCTAAACGTTG+AGG + chr1_2:5062007-5062026 Msa0051010:CDS 35.0%
AATATTCTAAACGTTGAGGG+TGG + chr1_2:5062011-5062030 Msa0051010:exon 35.0%
AACCAAACTACAGAGATACA+GGG - chr1_2:5062071-5062090 None:intergenic 35.0%
TAACCAAACTACAGAGATAC+AGG - chr1_2:5062072-5062091 None:intergenic 35.0%
! GTTTCGGAACTATTGATTGT+AGG + chr1_2:5062098-5062117 Msa0051010:three_prime_UTR 35.0%
ATTGATTGTAGGTTTCACTG+AGG + chr1_2:5062109-5062128 Msa0051010:three_prime_UTR 35.0%
ATAATAAGGAAACAAAGGGC+AGG - chr1_2:5062151-5062170 None:intergenic 35.0%
TACATTTCCCAATTCCATAC+TGG - chr1_2:5062178-5062197 None:intergenic 35.0%
AGTATGGAATTGGGAAATGT+AGG + chr1_2:5062177-5062196 Msa0051010:three_prime_UTR 35.0%
! GTAAAAAGGTGTATTTGGGT+TGG - chr1_2:5062211-5062230 None:intergenic 35.0%
CATCTCAATACACTTGAACA+AGG - chr1_2:5062308-5062327 None:intergenic 35.0%
TATAGTGTACACATGGTACA+AGG - chr1_2:5062393-5062412 None:intergenic 35.0%
TGCATGTTATAGTGTACACA+TGG - chr1_2:5062400-5062419 None:intergenic 35.0%
GGAAGATGTGAGAGATGATA+AGG - chr1_2:5055090-5055109 Msa0051000:CDS 40.0%
!! TGGTTTGGAAGAGATTTTGG+AGG - chr1_2:5055132-5055151 Msa0051000:CDS 40.0%
!!! GGTTGGTTTGGAAGAGATTT+TGG - chr1_2:5055135-5055154 Msa0051000:CDS 40.0%
TTGCAGTTACAGTGAGAGAA+TGG - chr1_2:5055205-5055224 Msa0051000:CDS 40.0%
!!! TGTTTTGAGGTCAGCGATTT+CGG - chr1_2:5055252-5055271 Msa0051000:intron 40.0%
GTTAAATCTAGACTTCCTGG+TGG + chr1_2:5055275-5055294 Msa0051010:CDS 40.0%
TTCGCTGCTCAAACTATCAT+CGG + chr1_2:5055299-5055318 Msa0051010:CDS 40.0%
! TATTGCTCGTGTTGTTCTTC+AGG + chr1_2:5055343-5055362 Msa0051010:intron 40.0%
TGTTGTTCTTCAGGAAGGAA+CGG + chr1_2:5055352-5055371 Msa0051010:intron 40.0%
!!! ACGGATGGAGTGTTTTAGAA+AGG + chr1_2:5055649-5055668 Msa0051010:intron 40.0%
GAAAGGAATAAAAGCAGTGG+CGG + chr1_2:5055666-5055685 Msa0051010:intron 40.0%
!! ACTCTACTAGAGAGTACCAA+AGG + chr1_2:5055857-5055876 Msa0051010:intron 40.0%
!! CTCTACTAGAGAGTACCAAA+GGG + chr1_2:5055858-5055877 Msa0051010:intron 40.0%
GCAAAGCCAAGTCATTAAAG+TGG - chr1_2:5056041-5056060 Msa0051000:intron 40.0%
TTATCTTGACTCCAACCTTG+AGG - chr1_2:5056111-5056130 Msa0051000:intron 40.0%
CAAGGTTGGAGTCAAGATAA+TGG + chr1_2:5056111-5056130 Msa0051010:intron 40.0%
TGGACAATAAAACATCCACC+AGG + chr1_2:5056160-5056179 Msa0051010:intron 40.0%
ATCCCACAACTTGAACTCTA+AGG + chr1_2:5056183-5056202 Msa0051010:intron 40.0%
!! GTCCTTAGAGTTCAAGTTGT+GGG - chr1_2:5056188-5056207 Msa0051000:intron 40.0%
TTGCATGCAAACAGAACCTT+TGG + chr1_2:5056282-5056301 Msa0051010:intron 40.0%
GGAACATATCAAGACACCAA+AGG - chr1_2:5056301-5056320 Msa0051000:CDS 40.0%
CATCTATTGATGTCAGGGTT+AGG - chr1_2:5056322-5056341 Msa0051000:CDS 40.0%
! ACTAGTTTGGTTCATGAGAG+TGG - chr1_2:5056391-5056410 Msa0051000:CDS 40.0%
ACTCTCATGAACCAAACTAG+TGG + chr1_2:5056390-5056409 Msa0051010:intron 40.0%
!! CTTGAGAAGTACCACTAGTT+TGG - chr1_2:5056404-5056423 Msa0051000:CDS 40.0%
!! CTAAGAACTTGTTAGGTGTG+AGG - chr1_2:5056438-5056457 Msa0051000:CDS 40.0%
CTGAGTAATGCACCAATAGA+TGG - chr1_2:5056553-5056572 Msa0051000:CDS 40.0%
CATCTATTGGTGCATTACTC+AGG + chr1_2:5056551-5056570 Msa0051010:intron 40.0%
TGGCATCAGGTTTGACAAAA+TGG - chr1_2:5056684-5056703 Msa0051000:CDS 40.0%
!!! CTGTGGTAGTGGTGTTATTT+TGG - chr1_2:5056723-5056742 Msa0051000:CDS 40.0%
ATCATTCCCTGTTGCATCTA+TGG + chr1_2:5056771-5056790 Msa0051010:intron 40.0%
ACAAGTCCATAGATGCAACA+GGG - chr1_2:5056780-5056799 Msa0051000:CDS 40.0%
AAACGCCTCATTAATCCCAT+AGG + chr1_2:5056930-5056949 Msa0051010:intron 40.0%
TGTACCCAAGATTCAGTTAG+TGG - chr1_2:5057034-5057053 Msa0051000:CDS 40.0%
CTTGGGTACAGAAATAGAAG+AGG + chr1_2:5057044-5057063 Msa0051010:intron 40.0%
CAATTAAAATGGCCACCTCA+TGG + chr1_2:5057085-5057104 Msa0051010:intron 40.0%
CTTTCAATTCTGGTGACTCA+AGG - chr1_2:5057143-5057162 Msa0051000:CDS 40.0%
GGAATTCATGGTAACTTTGG+TGG - chr1_2:5057279-5057298 Msa0051000:CDS 40.0%
!! GTTGGTGGTAAGGAAATACA+CGG - chr1_2:5057591-5057610 Msa0051000:CDS 40.0%
! TTTTATGTGTGTGAGGACGA+AGG + chr1_2:5057973-5057992 Msa0051010:intron 40.0%
AGGACGAAGGAAATCAAACA+AGG + chr1_2:5057986-5058005 Msa0051010:intron 40.0%
GAAATCAAACAAGGATGCCA+AGG + chr1_2:5057995-5058014 Msa0051010:intron 40.0%
CGACGAAATTTCATTCGAAG+TGG - chr1_2:5058175-5058194 Msa0051000:CDS 40.0%
! AGATCGAAGCGTTCAAAAGA+CGG - chr1_2:5058201-5058220 Msa0051000:CDS 40.0%
!! TGTGGTTTTCAGAAGAGCAT+TGG - chr1_2:5058278-5058297 Msa0051000:CDS 40.0%
!! ATGTTCCTCTATTGGTTCCA+CGG + chr1_2:5058460-5058479 Msa0051010:intron 40.0%
AATTCTTGAGCTGTTGCAAG+AGG - chr1_2:5058543-5058562 Msa0051000:CDS 40.0%
! TCATACTTGAGTTGTGCTGT+CGG + chr1_2:5058600-5058619 Msa0051010:intron 40.0%
TCCAGATCATCTTCATCATC+AGG + chr1_2:5058713-5058732 Msa0051010:intron 40.0%
! ACCTGATGATGAAGATGATC+TGG - chr1_2:5058717-5058736 None:intergenic 40.0%
AGATCATCTTCATCATCAGG+TGG + chr1_2:5058716-5058735 Msa0051010:intron 40.0%
GATCATCTTCATCATCAGGT+GGG + chr1_2:5058717-5058736 Msa0051010:intron 40.0%
ATCATCTTCATCATCAGGTG+GGG + chr1_2:5058718-5058737 Msa0051010:intron 40.0%
GGTAAAATAACCCTCCATTC+AGG + chr1_2:5058740-5058759 Msa0051010:intron 40.0%
! CCTTCACTTCAGTTTTCCTT+TGG - chr1_2:5058775-5058794 None:intergenic 40.0%
CCAAAGGAAAACTGAAGTGA+AGG + chr1_2:5058772-5058791 Msa0051010:intron 40.0%
!! ACTCTACTAGAGAGTACCAA+AGG + chr1_2:5055857-5055876 Msa0051010:intron 40.0%
!! CTCTACTAGAGAGTACCAAA+GGG + chr1_2:5055858-5055877 Msa0051010:intron 40.0%
GCAAAGCCAAGTCATTAAAG+TGG - chr1_2:5056041-5056060 Msa0051000:intron 40.0%
! CTGTTTTCCTCTGTGATTGA+AGG - chr1_2:5059811-5059830 None:intergenic 40.0%
CTTCAATCACAGAGGAAAAC+AGG + chr1_2:5059809-5059828 Msa0051010:intron 40.0%
ATCACAGAGGAAAACAGGTT+TGG + chr1_2:5059814-5059833 Msa0051010:intron 40.0%
! GGTTTATGGCTCTGTAGTAA+CGG + chr1_2:5060014-5060033 Msa0051010:intron 40.0%
CAAAATGAGAGAGGGATAGT+TGG + chr1_2:5060187-5060206 Msa0051010:intron 40.0%
TAGAATAAATGGGTAGGCCA+TGG + chr1_2:5060274-5060293 Msa0051010:intron 40.0%
TGTTAGCAAACATAAGTGGG+AGG + chr1_2:5060599-5060618 Msa0051010:intron 40.0%
GTTAGCAAACATAAGTGGGA+GGG + chr1_2:5060600-5060619 Msa0051010:intron 40.0%
GACTAACATTTGTCGTACAC+CGG - chr1_2:5060757-5060776 None:intergenic 40.0%
TCTTACCAAACATAAGTGGG+AGG + chr1_2:5061017-5061036 Msa0051010:intron 40.0%
CTTACCAAACATAAGTGGGA+GGG + chr1_2:5061018-5061037 Msa0051010:intron 40.0%
! TGTGGTGACGTTCAATTTAC+AGG + chr1_2:5061220-5061239 Msa0051010:intron 40.0%
!! TCCAATGACTGGCTTTGATT+GGG - chr1_2:5061413-5061432 None:intergenic 40.0%
!! ATCCAATGACTGGCTTTGAT+TGG - chr1_2:5061414-5061433 None:intergenic 40.0%
!!! AGTTTTGAAGGCAAAGTCGA+AGG - chr1_2:5061597-5061616 None:intergenic 40.0%
ATCTTCAAGGAAATCCGCTA+TGG + chr1_2:5061744-5061763 Msa0051010:CDS 40.0%
TGATGTGTTTGTGAAAGCTG+AGG + chr1_2:5061817-5061836 Msa0051010:CDS 40.0%
GATGTGTTTGTGAAAGCTGA+GGG + chr1_2:5061818-5061837 Msa0051010:CDS 40.0%
!! AGAGTACCTTTGAGACAACA+AGG + chr1_2:5061917-5061936 Msa0051010:CDS 40.0%
!! GAGTACCTTTGAGACAACAA+GGG + chr1_2:5061918-5061937 Msa0051010:CDS 40.0%
TTCCCTGTATCTCTGTAGTT+TGG + chr1_2:5062066-5062085 Msa0051010:three_prime_UTR 40.0%
TTCACTGAGGCCTTTGTATT+CGG + chr1_2:5062122-5062141 Msa0051010:three_prime_UTR 40.0%
! ATTTCTGGAGATGGTTGTTG+TGG + chr1_2:5062367-5062386 Msa0051010:three_prime_UTR 40.0%
!!! ACATGCAGTTTTTAGAGCCA+AGG + chr1_2:5062413-5062432 Msa0051010:three_prime_UTR 40.0%
!! GGAAGAGATTTTGGAGGAGA+AGG - chr1_2:5055126-5055145 Msa0051000:CDS 45.0%
!!! GTTTTGAGGTCAGCGATTTC+GGG - chr1_2:5055251-5055270 Msa0051000:intron 45.0%
GCTCAAACTATCATCGGTAC+CGG + chr1_2:5055305-5055324 Msa0051010:intron 45.0%
! AATAGCAGTTTTCCGACGAC+CGG - chr1_2:5055327-5055346 Msa0051000:intron 45.0%
GTTGTTCTTCAGGAAGGAAC+GGG + chr1_2:5055353-5055372 Msa0051010:intron 45.0%
GGAGCCAGACCAAAAAGTTT+GGG + chr1_2:5055687-5055706 Msa0051010:intron 45.0%
!! CCATCCCAAACTTTTTGGTC+TGG - chr1_2:5055694-5055713 Msa0051000:intron 45.0%
CCAGACCAAAAAGTTTGGGA+TGG + chr1_2:5055691-5055710 Msa0051010:intron 45.0%
GGGAGCAATGGTTAACAAGA+AGG - chr1_2:5055921-5055940 Msa0051000:intron 45.0%
ATCAACCTTGTCCTCAAGGT+TGG + chr1_2:5056097-5056116 Msa0051010:intron 45.0%
!! GGTCCTTAGAGTTCAAGTTG+TGG - chr1_2:5056189-5056208 Msa0051000:intron 45.0%
!! ATGAAATAGGTGGACTGTGC+AGG + chr1_2:5056491-5056510 Msa0051010:intron 45.0%
TTGGATGAGACTACGGCAAA+TGG - chr1_2:5056704-5056723 Msa0051000:CDS 45.0%
TCTCACTAAAGCTGTGGTAG+TGG - chr1_2:5056734-5056753 Msa0051000:CDS 45.0%
! ACCACAGCTTTAGTGAGACT+TGG + chr1_2:5056736-5056755 Msa0051010:intron 45.0%
! CCACAGCTTTAGTGAGACTT+GGG + chr1_2:5056737-5056756 Msa0051010:intron 45.0%
CACAAGTCCATAGATGCAAC+AGG - chr1_2:5056781-5056800 Msa0051000:CDS 45.0%
CTGTTGCATCTATGGACTTG+TGG + chr1_2:5056779-5056798 Msa0051010:intron 45.0%
CCTAGCCTATGGGATTAATG+AGG - chr1_2:5056938-5056957 Msa0051000:CDS 45.0%
CCTCATTAATCCCATAGGCT+AGG + chr1_2:5056935-5056954 Msa0051010:intron 45.0%
TGGGAAAATGCCTAGCCTAT+GGG - chr1_2:5056948-5056967 Msa0051000:CDS 45.0%
! TTTGGTGGTCTCTCTTGTCA+TGG - chr1_2:5057264-5057283 Msa0051000:CDS 45.0%
ATCAAACAGTGACGCAGTTC+AGG - chr1_2:5057520-5057539 Msa0051000:CDS 45.0%
!! AATACACGGTGTAATGGGTG+AGG - chr1_2:5057577-5057596 Msa0051000:CDS 45.0%
CACCTTGCTGAGTAATTGTG+GGG - chr1_2:5057628-5057647 Msa0051000:CDS 45.0%
CCACCTTGCTGAGTAATTGT+GGG - chr1_2:5057629-5057648 Msa0051000:CDS 45.0%
CCACAATTACTCAGCAAGGT+GGG + chr1_2:5057627-5057646 Msa0051010:intron 45.0%
!! GCTTGGGCTGTTTTACTTCA+TGG - chr1_2:5057660-5057679 Msa0051000:CDS 45.0%
CAGTTTGTCCACTACCTGTT+TGG - chr1_2:5058061-5058080 Msa0051000:CDS 45.0%
!! CACTGCTCTGGAATTGTCAT+CGG + chr1_2:5058115-5058134 Msa0051010:intron 45.0%
!! ACTGCTCTGGAATTGTCATC+GGG + chr1_2:5058116-5058135 Msa0051010:intron 45.0%
! GTCTTTTGAACGCTTCGATC+TGG + chr1_2:5058200-5058219 Msa0051010:intron 45.0%
! TTTTGAACGCTTCGATCTGG+CGG + chr1_2:5058203-5058222 Msa0051010:intron 45.0%
! CTCTTCTGAAAACCACACTC+TGG + chr1_2:5058281-5058300 Msa0051010:intron 45.0%
TCTTCACCTGGGATGATTCA+CGG + chr1_2:5058429-5058448 Msa0051010:intron 45.0%
! GCAACAACTTCGTCTGAAGT+CGG + chr1_2:5058485-5058504 Msa0051010:intron 45.0%
!! GAATTTTGGCACACGACTCT+CGG + chr1_2:5058558-5058577 Msa0051010:intron 45.0%
TCATCTTCATCATCAGGTGG+GGG + chr1_2:5058719-5058738 Msa0051010:intron 45.0%
! ACGTCATCCATGGGTTACTT+GGG - chr1_2:5058801-5058820 None:intergenic 45.0%
ATGGTATCCACGTCATCCAT+GGG - chr1_2:5058810-5058829 None:intergenic 45.0%
AATGGTATCCACGTCATCCA+TGG - chr1_2:5058811-5058830 None:intergenic 45.0%
GTGGCTGCAATTGCAATGAA+AGG - chr1_2:5058857-5058876 None:intergenic 45.0%
GGGAGCAATGGTTAACAAGA+AGG - chr1_2:5055921-5055940 Msa0051000:intron 45.0%
!! TCTGTAGTAACGGACAGAGA+GGG + chr1_2:5060024-5060043 Msa0051010:intron 45.0%
ACGGAGAGATTGAAGATGGA+GGG + chr1_2:5060106-5060125 Msa0051010:intron 45.0%
!! AGAGAGGGATAGTTGGTGAA+TGG + chr1_2:5060194-5060213 Msa0051010:intron 45.0%
GTCCAATGATCAACAAGCGT+TGG + chr1_2:5060430-5060449 Msa0051010:intron 45.0%
! CACCAACGCTTGTTGATCAT+TGG - chr1_2:5060435-5060454 None:intergenic 45.0%
TGAAGAGTAACTGGGCATCA+TGG + chr1_2:5060518-5060537 Msa0051010:intron 45.0%
GACACTAACATGAACGCATG+TGG + chr1_2:5060780-5060799 Msa0051010:intron 45.0%
GACACTAACACGAATGCATG+TGG + chr1_2:5061202-5061221 Msa0051010:intron 45.0%
! GTCGAAGTGTCTGTGTTTCA+TGG + chr1_2:5061244-5061263 Msa0051010:intron 45.0%
!! CCAATGACTGGCTTTGATTG+GGG - chr1_2:5061412-5061431 None:intergenic 45.0%
! AGAAGCCCTTGTTGTCTCAA+AGG - chr1_2:5061926-5061945 None:intergenic 45.0%
!! GAGATTCTAGAGCTGTTGAG+AGG + chr1_2:5061951-5061970 Msa0051010:CDS 45.0%
GCTGTTGAGAGGAAGAAAGT+TGG + chr1_2:5061962-5061981 Msa0051010:CDS 45.0%
!! AGAATAAAAAAATTAAATAA+TGG + chr1_2:5061111-5061130 Msa0051010:intron 5.0%
GGAGAAGGAGAGTGAAGAGA+GGG - chr1_2:5055111-5055130 Msa0051000:CDS 50.0%
AGGAGAAGGAGAGTGAAGAG+AGG - chr1_2:5055112-5055131 Msa0051000:CDS 50.0%
! GAGAGAGAGAGTGGTTGGTT+TGG - chr1_2:5055147-5055166 Msa0051000:CDS 50.0%
GAATTTGGGAGAGCGAGAGA+GGG - chr1_2:5055183-5055202 Msa0051000:CDS 50.0%
! GCTCGTGTTGTTCTTCAGGA+AGG + chr1_2:5055347-5055366 Msa0051010:intron 50.0%
CGGAGCCAGACCAAAAAGTT+TGG + chr1_2:5055686-5055705 Msa0051010:intron 50.0%
GTCTCTTCTCTCTCTCCCTT+TGG - chr1_2:5055876-5055895 Msa0051000:intron 50.0%
TGACTCCAACCTTGAGGACA+AGG - chr1_2:5056105-5056124 Msa0051000:intron 50.0%
!! TTCAAGTTGTGGGATCCTGG+TGG - chr1_2:5056178-5056197 Msa0051000:intron 50.0%
!! GAGTTCAAGTTGTGGGATCC+TGG - chr1_2:5056181-5056200 Msa0051000:intron 50.0%
AGACTACGGCAAATGGCATC+AGG - chr1_2:5056697-5056716 Msa0051000:CDS 50.0%
CCCAAGTCTCACTAAAGCTG+TGG - chr1_2:5056740-5056759 Msa0051000:CDS 50.0%
CTGGGAAAATGCCTAGCCTA+TGG - chr1_2:5056949-5056968 Msa0051000:CDS 50.0%
! CATAGGCTAGGCATTTTCCC+AGG + chr1_2:5056947-5056966 Msa0051010:intron 50.0%
AATGGCCACCTCATGGAGTT+TGG + chr1_2:5057092-5057111 Msa0051010:intron 50.0%
TCTGGTGACTCAAGGCTGAT+GGG - chr1_2:5057135-5057154 Msa0051000:CDS 50.0%
TTCTGGTGACTCAAGGCTGA+TGG - chr1_2:5057136-5057155 Msa0051000:CDS 50.0%
!! TGTAATGGGTGAGGAAGGTC+TGG - chr1_2:5057568-5057587 Msa0051000:CDS 50.0%
CACCCCACAATTACTCAGCA+AGG + chr1_2:5057623-5057642 Msa0051010:intron 50.0%
CCCACAATTACTCAGCAAGG+TGG + chr1_2:5057626-5057645 Msa0051010:intron 50.0%
CCCACCTTGCTGAGTAATTG+TGG - chr1_2:5057630-5057649 Msa0051000:CDS 50.0%
AAGTATGGAGTCCACTGCTC+TGG + chr1_2:5058103-5058122 Msa0051010:intron 50.0%
CGATGACAATTCCAGAGCAG+TGG - chr1_2:5058117-5058136 Msa0051000:CDS 50.0%
!! CTCTGGAATTGTCATCGGGT+GGG + chr1_2:5058120-5058139 Msa0051010:intron 50.0%
!! GAGCATTGGAATGATCGCAG+CGG - chr1_2:5058264-5058283 Msa0051000:CDS 50.0%
AACATCGCAACACCAGAGTG+TGG - chr1_2:5058296-5058315 Msa0051000:CDS 50.0%
ACTTGACGCGGATACGAAGA+AGG - chr1_2:5058351-5058370 Msa0051000:CDS 50.0%
CTTCACCTGGGATGATTCAC+GGG + chr1_2:5058430-5058449 Msa0051010:intron 50.0%
TGTTACCCGTGAATCATCCC+AGG - chr1_2:5058438-5058457 Msa0051000:CDS 50.0%
GAATCGAGATCCCTAACAGC+AGG + chr1_2:5058638-5058657 Msa0051010:intron 50.0%
AGATCCCTAACAGCAGGAGA+CGG + chr1_2:5058644-5058663 Msa0051010:intron 50.0%
ACATCCGTCTCCTGCTGTTA+GGG - chr1_2:5058651-5058670 None:intergenic 50.0%
AACATCCGTCTCCTGCTGTT+AGG - chr1_2:5058652-5058671 None:intergenic 50.0%
TCACCTTGCTGCAACTGTTG+TGG + chr1_2:5058683-5058702 Msa0051010:intron 50.0%
GAACCACAACAGTTGCAGCA+AGG - chr1_2:5058689-5058708 None:intergenic 50.0%
! AAGGCATCCCAAGTAACCCA+TGG + chr1_2:5058791-5058810 Msa0051010:intron 50.0%
! CACGTCATCCATGGGTTACT+TGG - chr1_2:5058802-5058821 None:intergenic 50.0%
CAAGTAACCCATGGATGACG+TGG + chr1_2:5058800-5058819 Msa0051010:intron 50.0%
CTCTCACATGGTGGCTTCAA+TGG - chr1_2:5058829-5058848 None:intergenic 50.0%
AGAGGCAGAGAAGATGACAG+TGG - chr1_2:5058876-5058895 None:intergenic 50.0%
ACTGTCATCTTCTCTGCCTC+TGG + chr1_2:5058875-5058894 Msa0051010:intron 50.0%
CAAGCAATGGCTCATACCAG+AGG - chr1_2:5058894-5058913 None:intergenic 50.0%
GTCTCTTCTCTCTCTCCCTT+TGG - chr1_2:5055876-5055895 Msa0051000:intron 50.0%
!! CTCTGTAGTAACGGACAGAG+AGG + chr1_2:5060023-5060042 Msa0051010:intron 50.0%
GTCGACGGAGAGATTGAAGA+TGG + chr1_2:5060102-5060121 Msa0051010:intron 50.0%
GACGGAGAGATTGAAGATGG+AGG + chr1_2:5060105-5060124 Msa0051010:intron 50.0%
!! GGGATAGTTGGTGAATGGCA+TGG + chr1_2:5060199-5060218 Msa0051010:intron 50.0%
!! AGTTGGTGAATGGCATGGCA+TGG + chr1_2:5060204-5060223 Msa0051010:intron 50.0%
AGCAAACATAAGTGGGAGGG+AGG + chr1_2:5060603-5060622 Msa0051010:intron 50.0%
GCAAACATAAGTGGGAGGGA+GGG + chr1_2:5060604-5060623 Msa0051010:intron 50.0%
!!! TGGGAGGGAGGGTTTTAGAA+AGG + chr1_2:5060615-5060634 Msa0051010:intron 50.0%
ACCAAACATAAGTGGGAGGG+AGG + chr1_2:5061021-5061040 Msa0051010:intron 50.0%
CCAAACATAAGTGGGAGGGA+GGG + chr1_2:5061022-5061041 Msa0051010:intron 50.0%
!!! TGGGAGGGAGGGTTTTAGAA+AGG + chr1_2:5060615-5060634 Msa0051010:intron 50.0%
CCCCAATCAAAGCCAGTCAT+TGG + chr1_2:5061409-5061428 Msa0051010:intron 50.0%
TACCTCTGCAGTTCAGAGGT+TGG - chr1_2:5061492-5061511 None:intergenic 50.0%
GTGTTTGTGAAAGCTGAGGG+TGG + chr1_2:5061821-5061840 Msa0051010:CDS 50.0%
TTTGTGAAAGCTGAGGGTGG+TGG + chr1_2:5061824-5061843 Msa0051010:CDS 50.0%
CAACGCACGAGCAATACCAA+GGG - chr1_2:5061876-5061895 None:intergenic 50.0%
TATTGCTCGTGCGTTGCTGA+AGG + chr1_2:5061880-5061899 Msa0051010:CDS 50.0%
GCGTTGCTGAAGGTTAGTGA+AGG + chr1_2:5061890-5061909 Msa0051010:CDS 50.0%
GGGCAGGATTCCGAATACAA+AGG - chr1_2:5062135-5062154 None:intergenic 50.0%
GAGAGAGGGAGAAGGTTCTG+GGG - chr1_2:5055169-5055188 Msa0051000:CDS 55.0%
CGAGAGAGGGAGAAGGTTCT+GGG - chr1_2:5055170-5055189 Msa0051000:CDS 55.0%
GGAATTTGGGAGAGCGAGAG+AGG - chr1_2:5055184-5055203 Msa0051000:CDS 55.0%
!! GAGGTCAGCGATTTCGGGTT+CGG - chr1_2:5055246-5055265 Msa0051000:intron 55.0%
GTTTGAGCAGCGAATCCACC+AGG - chr1_2:5055293-5055312 Msa0051000:intron 55.0%
!! CTATCATCGGTACCGGTCGT+CGG + chr1_2:5055312-5055331 Msa0051010:intron 55.0%
GAGTGCCAAACTCCATGAGG+TGG - chr1_2:5057100-5057119 Msa0051000:CDS 55.0%
GCTGAGTGCCAAACTCCATG+AGG - chr1_2:5057103-5057122 Msa0051000:CDS 55.0%
CAAGGCTGATGGGAGTGGAA+TGG - chr1_2:5057125-5057144 Msa0051000:CDS 55.0%
TGACTCAAGGCTGATGGGAG+TGG - chr1_2:5057130-5057149 Msa0051000:CDS 55.0%
!! CACGGTGTAATGGGTGAGGA+AGG - chr1_2:5057573-5057592 Msa0051000:CDS 55.0%
!! GCTCTGGAATTGTCATCGGG+TGG + chr1_2:5058119-5058138 Msa0051010:intron 55.0%
GAATTGTCATCGGGTGGGTG+TGG + chr1_2:5058125-5058144 Msa0051010:intron 55.0%
! ACGCTTCGATCTGGCGGTTT+TGG + chr1_2:5058209-5058228 Msa0051010:intron 55.0%
!! CTTCGATCTGGCGGTTTTGG+TGG + chr1_2:5058212-5058231 Msa0051010:intron 55.0%
TGCGTCCGTGGAACCAATAG+AGG - chr1_2:5058468-5058487 Msa0051000:CDS 55.0%
AGACGAAGTTGTTGCGTCCG+TGG - chr1_2:5058480-5058499 Msa0051000:CDS 55.0%
AGAGGAGATAGACGCTACCG+AGG - chr1_2:5058525-5058544 Msa0051000:CDS 55.0%
!! CTGTCGGTTTGAGTCAGTCG+TGG + chr1_2:5058616-5058635 Msa0051010:intron 55.0%
TGAAGCCACCATGTGAGAGC+TGG + chr1_2:5058830-5058849 Msa0051010:intron 55.0%
GAAGCCACCATGTGAGAGCT+GGG + chr1_2:5058831-5058850 Msa0051010:intron 55.0%
TGAAAGGCCCAGCTCTCACA+TGG - chr1_2:5058841-5058860 None:intergenic 55.0%
AACGGACAGAGAGGGAGAGA+TGG + chr1_2:5060032-5060051 Msa0051010:intron 55.0%
CGCGAGAGTTGCAAGTGAGA+GGG + chr1_2:5060080-5060099 Msa0051010:intron 55.0%
GTTGCAAGTGAGAGGGTCGA+CGG + chr1_2:5060087-5060106 Msa0051010:intron 55.0%
GTGAATGGCATGGCATGGCA+TGG + chr1_2:5060209-5060228 Msa0051010:intron 55.0%
CCCTCCCTCCCACTTATGTT+TGG - chr1_2:5060607-5060626 None:intergenic 55.0%
! GGCTTTGATTGGGGCAGAAG+AGG - chr1_2:5061403-5061422 None:intergenic 55.0%
CAGCTACCTCTGCAGTTCAG+AGG - chr1_2:5061496-5061515 None:intergenic 55.0%
CTGAACTGCAGAGGTAGCTG+AGG + chr1_2:5061496-5061515 Msa0051010:intron 55.0%
GCAACGCACGAGCAATACCA+AGG - chr1_2:5061877-5061896 None:intergenic 55.0%
CTGGGGAGAGAGAGAGTGGT+TGG - chr1_2:5055152-5055171 Msa0051000:CDS 60.0%
!! GGTTCTGGGGAGAGAGAGAG+TGG - chr1_2:5055156-5055175 Msa0051000:CDS 60.0%
GCGAGAGAGGGAGAAGGTTC+TGG - chr1_2:5055171-5055190 Msa0051000:CDS 60.0%
!! AGCGATTTCGGGTTCGGCAG+GGG - chr1_2:5055240-5055259 Msa0051000:intron 60.0%
!! CAGCGATTTCGGGTTCGGCA+GGG - chr1_2:5055241-5055260 Msa0051000:intron 60.0%
!! TCAGCGATTTCGGGTTCGGC+AGG - chr1_2:5055242-5055261 Msa0051000:intron 60.0%
TTGTCATCGGGTGGGTGTGG+TGG + chr1_2:5058128-5058147 Msa0051010:intron 60.0%
!! GTGTGGTGGTGGTCGAAGCA+TGG + chr1_2:5058142-5058161 Msa0051010:intron 60.0%
GTGGTGGTCGAAGCATGGTG+AGG + chr1_2:5058147-5058166 Msa0051010:intron 60.0%
!! CGATCTGGCGGTTTTGGTGG+CGG + chr1_2:5058215-5058234 Msa0051010:intron 60.0%
! GGTGGAGGCATGCTGCATTC+CGG + chr1_2:5058236-5058255 Msa0051010:intron 60.0%
AAGGCCCAGCTCTCACATGG+TGG - chr1_2:5058838-5058857 None:intergenic 60.0%
GCGCGAGAGTTGCAAGTGAG+AGG + chr1_2:5060079-5060098 Msa0051010:intron 60.0%
GAGGGAGTTGCGAGCAGTGA+TGG + chr1_2:5060124-5060143 Msa0051010:intron 60.0%
GGAGTTGCGAGCAGTGATGG+TGG + chr1_2:5060127-5060146 Msa0051010:intron 60.0%
! GCAGTTCAGAGGTTGGCCGT+TGG - chr1_2:5061485-5061504 None:intergenic 60.0%
GGCCAACCTCTGAACTGCAG+AGG + chr1_2:5061487-5061506 Msa0051010:intron 60.0%
TGGCCTCTCTGGTCAAGCTC+AGG + chr1_2:5061844-5061863 Msa0051010:CDS 60.0%
TCGCCTGAGCTTGACCAGAG+AGG - chr1_2:5061850-5061869 None:intergenic 60.0%
CAAGCTCAGGCGATCACCCT+TGG + chr1_2:5061857-5061876 Msa0051010:CDS 60.0%
GGGAGAGCGAGAGAGGGAGA+AGG - chr1_2:5055177-5055196 Msa0051000:CDS 65.0%
TCATCGGGTGGGTGTGGTGG+TGG + chr1_2:5058131-5058150 Msa0051010:intron 65.0%
!!! TCTGGCGGTTTTGGTGGCGG+TGG + chr1_2:5058218-5058237 Msa0051010:intron 65.0%
TGGAATGATCGCAGCGGCGC+CGG - chr1_2:5058258-5058277 Msa0051000:CDS 65.0%
!! CGGAAGTGCTTCGCTCGCCT+CGG + chr1_2:5058505-5058524 Msa0051010:intron 65.0%
!! GTGTGGACTGGGACTGGCCA+TGG - chr1_2:5060294-5060313 None:intergenic 65.0%
!! AGCCACGTGTGGACTGGGAC+TGG - chr1_2:5060300-5060319 None:intergenic 65.0%
! TTCAGTGGCGGAGCCACGTG+TGG - chr1_2:5060311-5060330 None:intergenic 65.0%
!!! GGCGGTTTTGGTGGCGGTGG+AGG + chr1_2:5058221-5058240 Msa0051010:intron 70.0%
GGCCAGTCCCAGTCCACACG+TGG + chr1_2:5060295-5060314 Msa0051010:intron 70.0%
GGCGGAGCCACGTGTGGACT+GGG - chr1_2:5060305-5060324 None:intergenic 70.0%
TGGCGGAGCCACGTGTGGAC+TGG - chr1_2:5060306-5060325 None:intergenic 70.0%
! GCTGAGGGTGGTGGCCTCTC+TGG + chr1_2:5061833-5061852 Msa0051010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5055077 5062451 5055077 ID=Msa0051010;Name=Msa0051010
chr1_2 mRNA 5055077 5062451 5055077 ID=Msa0051010-mRNA-1;Parent=Msa0051010;Name=Msa0051010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|0|0.33|3|424|189
chr1_2 exon 5055077 5055320 5055077 ID=Msa0051010-mRNA-1:exon:1399;Parent=Msa0051010-mRNA-1
chr1_2 exon 5055369 5055406 5055369 ID=Msa0051010-mRNA-1:exon:1400;Parent=Msa0051010-mRNA-1
chr1_2 exon 5061740 5062451 5061740 ID=Msa0051010-mRNA-1:exon:1401;Parent=Msa0051010-mRNA-1
chr1_2 CDS 5055077 5055320 5055077 ID=Msa0051010-mRNA-1:cds;Parent=Msa0051010-mRNA-1
chr1_2 CDS 5055369 5055406 5055369 ID=Msa0051010-mRNA-1:cds;Parent=Msa0051010-mRNA-1
chr1_2 CDS 5061740 5062027 5061740 ID=Msa0051010-mRNA-1:cds;Parent=Msa0051010-mRNA-1
chr1_2 three_prime_UTR 5062028 5062451 5062028 ID=Msa0051010-mRNA-1:three_prime_utr;Parent=Msa0051010-mRNA-1
Gene Sequence

>Msa0051010

ATGGCAGTTTCCTTATCATCTCTCACATCTTCCCTCTCTTCACTCTCCTTCTCCTCCAAAATCTCTTCCAAACCAACCACTCTCTCTCTCCCCAGAACCTTCTCCCTCTCTCGCTCTCCCAAATTCCATTCTCTCACTGTAACTGCAACAACACTCGCTTCCCCTGCCGAACCCGAAATCGCTGACCTCAAAACATACGTTAAATCTAGACTTCCTGGTGGATTCGCTGCTCAAACTATCATCGGAACGGGAAAAATCGTCATTAATTACCGTGATGCTAAGGAATATCTTCAAGGAAATCCGCTATGGCTTCAATACATTAAGGTGCCCTTATTAACTTTGGGATACGAAACTAGTTATGATGTGTTTGTGAAAGCTGAGGGTGGTGGCCTCTCTGGTCAAGCTCAGGCGATCACCCTTGGTATTGCTCGTGCGTTGCTGAAGGTTAGTGAAGGTCATAGAGTACCTTTGAGACAACAAGGGCTTCTGACTAGAGATTCTAGAGCTGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCTCCTCAATATTCTAAACGTTGA
Protein sequence

>Msa0051010

MAVSLSSLTSSLSSLSFSSKISSKPTTLSLPRTFSLSRSPKFHSLTVTATTLASPAEPEIADLKTYVKSRLPGGFAAQTIIGTGKIVINYRDAKEYLQGNPLWLQYIKVPLLTLGYETSYDVFVKAEGGGLSGQAQAITLGIARALLKVSEGHRVPLRQQGLLTRDSRAVERKKVGLKKARKAPQYSKR*