Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101280 | XP_003589311.1 | 89.756 | 205 | 5 | 1 | 1 | 189 | 1 | 205 | 4.71e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101280 | sp|P82278|RR9_SPIOL | 67.308 | 208 | 49 | 3 | 1 | 189 | 1 | 208 | 7.47e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101280 | G7I5B0 | 89.756 | 205 | 5 | 1 | 1 | 189 | 1 | 205 | 2.25e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010550 | Msa0101280 | 0.969688 | 1.718405e-130 | -8.615850e-47 |
| Msa0051010 | Msa0101280 | 0.969524 | 2.999775e-130 | -8.615850e-47 |
| Msa0101280 | Msa0375800 | 0.838033 | 3.655907e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101280 | MtrunA17_Chr1g0154431 | 89.756 | 205 | 5 | 1 | 1 | 189 | 1 | 205 | 4.33e-128 | 358 |
| Msa0101280 | MtrunA17_Chr3g0118021 | 43.750 | 112 | 54 | 4 | 82 | 189 | 299 | 405 | 1.53e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101280 | AT1G74970.1 | 66.505 | 206 | 49 | 2 | 4 | 189 | 3 | 208 | 6.59e-85 | 249 |
| Msa0101280 | AT3G49080.1 | 42.857 | 112 | 55 | 4 | 82 | 189 | 324 | 430 | 4.30e-14 | 70.1 |
Find 81 sgRNAs with CRISPR-Local
Find 541 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTATCTGTAAAATTTC+TGG | 0.180911 | 1_3:-7865582 | Msa0101280:three_prime_UTR |
| GGTTGGTTTGGAAGAGATTT+TGG | 0.195951 | 1_3:+7872802 | Msa0101290:CDS |
| TACAGTGAGAGAATGGAATT+TGG | 0.236598 | 1_3:+7872739 | Msa0101290:CDS |
| TACTATGTTGAAGGTTTCTT+TGG | 0.252502 | 1_3:-7865706 | Msa0101280:three_prime_UTR |
| GCGAGAGAGGGAGAAGGTTC+TGG | 0.263181 | 1_3:+7872766 | Msa0101290:CDS |
| TCCATACTGGCAAAATAATA+AGG | 0.283512 | 1_3:+7865772 | None:intergenic |
| TTCGTATCCCAAAGTTAATA+AGG | 0.290144 | 1_3:+7866148 | None:intergenic |
| GAGGAAATAACATATATTTC+AGG | 0.295972 | 1_3:+7865680 | None:intergenic |
| GAGAGAGAGAGTGGTTGGTT+TGG | 0.310741 | 1_3:+7872790 | Msa0101290:CDS |
| TTCACTGAGGCCTTTGTATT+CGG | 0.318413 | 1_3:-7865812 | Msa0101280:three_prime_UTR |
| AAACCTTCAACATAGTAAAA+AGG | 0.337469 | 1_3:+7865712 | None:intergenic |
| TTCCCTGTATCTCTGTAGTT+TGG | 0.342025 | 1_3:-7865868 | Msa0101280:three_prime_UTR |
| TAAGGTGCCCTTATTAACTT+TGG | 0.349914 | 1_3:-7866156 | Msa0101280:CDS |
| GCTGAGGGTGGTGGCCTCTC+TGG | 0.350070 | 1_3:-7866101 | Msa0101280:CDS |
| GCTATGGCTTCAATACATTA+AGG | 0.364577 | 1_3:-7866174 | Msa0101280:CDS |
| CTGGGGAGAGAGAGAGTGGT+TGG | 0.367992 | 1_3:+7872785 | Msa0101290:CDS |
| TCAGCGATTTCGGGTTCGGC+AGG | 0.386590 | 1_3:+7872695 | Msa0101290:intron |
| TACGTTAAATCTAGACTTCC+TGG | 0.389969 | 1_3:-7872662 | Msa0101280:CDS |
| GGAAGATGTGAGAGATGATA+AGG | 0.391926 | 1_3:+7872847 | Msa0101290:CDS |
| GTTTCGGAACTATTGATTGT+AGG | 0.392267 | 1_3:-7865836 | Msa0101280:three_prime_UTR |
| GAGGTCAGCGATTTCGGGTT+CGG | 0.399549 | 1_3:+7872691 | Msa0101290:intron |
| CGAGAGAGGGAGAAGGTTCT+GGG | 0.402856 | 1_3:+7872767 | Msa0101290:CDS |
| TAACCAAACTACAGAGATAC+AGG | 0.405060 | 1_3:+7865865 | None:intergenic |
| AGTTTGGTTACTTTCAGTTT+CGG | 0.405516 | 1_3:-7865852 | Msa0101280:three_prime_UTR |
| ACAGTGAGAGAATGGAATTT+GGG | 0.409706 | 1_3:+7872740 | Msa0101290:CDS |
| TACATTTCCCAATTCCATAC+TGG | 0.423204 | 1_3:+7865759 | None:intergenic |
| TCGTATCCCAAAGTTAATAA+GGG | 0.423632 | 1_3:+7866149 | None:intergenic |
| ATCTGTAAAATTTCTGGAGA+TGG | 0.437955 | 1_3:-7865576 | Msa0101280:three_prime_UTR |
| AAGGTGCCCTTATTAACTTT+GGG | 0.444377 | 1_3:-7866155 | Msa0101280:CDS |
| AGCGATTTCGGGTTCGGCAG+GGG | 0.451024 | 1_3:+7872697 | Msa0101290:intron |
| GGAATTTGGGAGAGCGAGAG+AGG | 0.451858 | 1_3:+7872753 | Msa0101290:CDS |
| TTGCAGTTACAGTGAGAGAA+TGG | 0.456873 | 1_3:+7872732 | Msa0101290:CDS |
| GGTTCTGGGGAGAGAGAGAG+TGG | 0.468084 | 1_3:+7872781 | Msa0101290:CDS |
| CTCAATATTCTAAACGTTGA+GGG | 0.468618 | 1_3:-7865926 | Msa0101280:exon |
| TGGCCTCTCTGGTCAAGCTC+AGG | 0.474396 | 1_3:-7866090 | Msa0101280:CDS |
| CAAAATAATAAGGAAACAAA+GGG | 0.488587 | 1_3:+7865782 | None:intergenic |
| GGAGAAGGAGAGTGAAGAGA+GGG | 0.500055 | 1_3:+7872826 | Msa0101290:CDS |
| GTTGTACAGGAATATCTTCA+AGG | 0.503982 | 1_3:-7866203 | Msa0101280:intron |
| GCAAAATAATAAGGAAACAA+AGG | 0.505814 | 1_3:+7865781 | None:intergenic |
| CAAGCTCAGGCGATCACCCT+TGG | 0.506389 | 1_3:-7866077 | Msa0101280:CDS |
| AGTATGGAATTGGGAAATGT+AGG | 0.512865 | 1_3:-7865757 | Msa0101280:three_prime_UTR |
| TACACACAATCAATTAAAAG+AGG | 0.518003 | 1_3:+7865661 | None:intergenic |
| CATTAATTACCGTGATGCTA+AGG | 0.519189 | 1_3:-7872549 | Msa0101280:intron |
| CCTCAACGTTTAGAATATTG+AGG | 0.522813 | 1_3:+7865927 | None:intergenic |
| CAGCGATTTCGGGTTCGGCA+GGG | 0.530065 | 1_3:+7872696 | Msa0101290:intron |
| TTTGGGAATGCTACACACCT+TGG | 0.531838 | 1_3:+7865504 | None:intergenic |
| GAATTTGGGAGAGCGAGAGA+GGG | 0.540387 | 1_3:+7872754 | Msa0101290:CDS |
| AGGAGAAGGAGAGTGAAGAG+AGG | 0.540862 | 1_3:+7872825 | Msa0101290:CDS |
| AGATACAGGGAAGAATGAAA+AGG | 0.545154 | 1_3:+7865879 | None:intergenic |
| GTTTGAGCAGCGAATCCACC+AGG | 0.551516 | 1_3:+7872644 | Msa0101290:intron |
| TTCGCTGCTCAAACTATCAT+CGG | 0.553571 | 1_3:-7872635 | Msa0101280:intron |
| GGGAGAGCGAGAGAGGGAGA+AGG | 0.555061 | 1_3:+7872760 | Msa0101290:CDS |
| AGAAGCCCTTGTTGTCTCAA+AGG | 0.556232 | 1_3:+7866011 | None:intergenic |
| CCTCAATATTCTAAACGTTG+AGG | 0.561139 | 1_3:-7865927 | Msa0101280:exon |
| TATTGCTCGTGCGTTGCTGA+AGG | 0.576175 | 1_3:-7866054 | Msa0101280:CDS |
| GCTGTTGAGAGGAAGAAAGT+TGG | 0.577966 | 1_3:-7865972 | Msa0101280:CDS |
| ATCTTCAAGGAAATCCGCTA+TGG | 0.582748 | 1_3:-7866190 | Msa0101280:CDS |
| ATGAATAAACCTTAGCATCA+CGG | 0.583868 | 1_3:+7872540 | Msa0101290:intron |
| TATAGTGTACACATGGTACA+AGG | 0.587250 | 1_3:+7865544 | None:intergenic |
| ATAATAAGGAAACAAAGGGC+AGG | 0.589334 | 1_3:+7865786 | None:intergenic |
| GTGTTTGTGAAAGCTGAGGG+TGG | 0.596769 | 1_3:-7866113 | Msa0101280:CDS |
| TTTGTGAAAGCTGAGGGTGG+TGG | 0.605348 | 1_3:-7866110 | Msa0101280:CDS |
| CATCTCAATACACTTGAACA+AGG | 0.613434 | 1_3:+7865629 | None:intergenic |
| GAGAGAGGGAGAAGGTTCTG+GGG | 0.622430 | 1_3:+7872768 | Msa0101290:CDS |
| GAGATTCTAGAGCTGTTGAG+AGG | 0.623504 | 1_3:-7865983 | Msa0101280:CDS |
| ATTTCTGGAGATGGTTGCTG+TGG | 0.624688 | 1_3:-7865567 | Msa0101280:three_prime_UTR |
| TGATGTGTTTGTGAAAGCTG+AGG | 0.626462 | 1_3:-7866117 | Msa0101280:CDS |
| AATATTCTAAACGTTGAGGG+TGG | 0.633829 | 1_3:-7865923 | Msa0101280:exon |
| AGAGTACCTTTGAGACAACA+AGG | 0.639079 | 1_3:-7866017 | Msa0101280:CDS |
| GATGTGTTTGTGAAAGCTGA+GGG | 0.645465 | 1_3:-7866116 | Msa0101280:CDS |
| GCAACGCACGAGCAATACCA+AGG | 0.649038 | 1_3:+7866060 | None:intergenic |
| TGCATGTTATAGTGTACACA+TGG | 0.660660 | 1_3:+7865537 | None:intergenic |
| GGGCAGGATTCCGAATACAA+AGG | 0.665424 | 1_3:+7865802 | None:intergenic |
| GCGTTGCTGAAGGTTAGTGA+AGG | 0.671877 | 1_3:-7866044 | Msa0101280:CDS |
| AACCAAACTACAGAGATACA+GGG | 0.685063 | 1_3:+7865866 | None:intergenic |
| GTTAAATCTAGACTTCCTGG+TGG | 0.707157 | 1_3:-7872659 | Msa0101280:CDS |
| ATTGATTGTAGGTTTCACTG+AGG | 0.707639 | 1_3:-7865825 | Msa0101280:three_prime_UTR |
| CAACGCACGAGCAATACCAA+GGG | 0.707901 | 1_3:+7866061 | None:intergenic |
| GAGTACCTTTGAGACAACAA+GGG | 0.708894 | 1_3:-7866016 | Msa0101280:CDS |
| TCGCCTGAGCTTGACCAGAG+AGG | 0.719687 | 1_3:+7866087 | None:intergenic |
| TTAATGTATTGAAGCCATAG+CGG | 0.725178 | 1_3:+7866176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATTTTGTAAATTTTTA+AGG | + | chr1_3:7870093-7870112 | Msa0101290:CDS | 10.0% |
| !! | TATCATTTAACATTATTGTA+AGG | - | chr1_3:7868377-7868396 | Msa0101280:intron | 15.0% |
| !! | TGAAAATATAACTTATAGTT+AGG | - | chr1_3:7870420-7870439 | Msa0101280:intron | 15.0% |
| !! | GAAAATATAACTTATAGTTA+GGG | - | chr1_3:7870421-7870440 | Msa0101280:intron | 15.0% |
| !! | TAGAATAAAAAGTGAAATAA+TGG | - | chr1_3:7871117-7871136 | Msa0101280:intron | 15.0% |
| !! | TTATTCATCCAAAAAATATA+AGG | - | chr1_3:7871796-7871815 | Msa0101280:intron | 15.0% |
| !! | ACGTTAAGAAAATTATAATG+TGG | - | chr1_3:7865927-7865946 | Msa0101280:exon | 20.0% |
| !! | AGAAAATTATAATGTGGTAT+TGG | - | chr1_3:7865933-7865952 | Msa0101280:CDS | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | + | chr1_3:7866369-7866388 | None:intergenic | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | + | chr1_3:7866370-7866389 | None:intergenic | 20.0% |
| !! | ATACAACATAGAAATGAAAT+AGG | - | chr1_3:7866906-7866925 | Msa0101280:intron | 20.0% |
| !! | AATAAAAACAACACATGTTT+GGG | - | chr1_3:7867049-7867068 | Msa0101280:intron | 20.0% |
| !! | AAGGAAAATCAAGAAAAATA+TGG | - | chr1_3:7867282-7867301 | Msa0101280:intron | 20.0% |
| !! | AGAAAATAAGGCAATTAAAA+TGG | - | chr1_3:7867502-7867521 | Msa0101280:intron | 20.0% |
| !!! | TAAGGTTTATCATTGTTATT+AGG | + | chr1_3:7867640-7867659 | None:intergenic | 20.0% |
| !! | TAACAGATGTATTGAATTTA+AGG | + | chr1_3:7867658-7867677 | None:intergenic | 20.0% |
| !! | TTTGATACATTGATATCTTA+TGG | - | chr1_3:7867765-7867784 | Msa0101280:intron | 20.0% |
| !!! | AAATTCTGGTTTTGATATAT+GGG | + | chr1_3:7868174-7868193 | None:intergenic | 20.0% |
| !! | TCTCTTAATCTTCTATAAAA+GGG | + | chr1_3:7866369-7866388 | None:intergenic | 20.0% |
| !! | TTCTCTTAATCTTCTATAAA+AGG | + | chr1_3:7866370-7866389 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATCTCAAA+TGG | - | chr1_3:7869879-7869898 | Msa0101280:intron | 20.0% |
| !!! | TATTGATTCAATTAAAGAGA+AGG | + | chr1_3:7870140-7870159 | Msa0101290:CDS | 20.0% |
| !!! | ATTTGAGTGATTTTTTGATT+TGG | + | chr1_3:7870315-7870334 | Msa0101290:CDS | 20.0% |
| !! | AGTATGATTCAAAAACTTAA+GGG | - | chr1_3:7870372-7870391 | Msa0101280:intron | 20.0% |
| !! | AGTAATATTAAAATTAGCTC+AGG | - | chr1_3:7870661-7870680 | Msa0101280:intron | 20.0% |
| !! | GTAATATTAAAATTAGCTCA+GGG | - | chr1_3:7870662-7870681 | Msa0101280:intron | 20.0% |
| !! | TAATATTAAAATTAGCTCAG+GGG | - | chr1_3:7870663-7870682 | Msa0101280:intron | 20.0% |
| !!! | TAGTCTTTTCATAGAATAAA+TGG | - | chr1_3:7870691-7870710 | Msa0101280:intron | 20.0% |
| !!! | AGTCTTTTCATAGAATAAAT+GGG | - | chr1_3:7870692-7870711 | Msa0101280:intron | 20.0% |
| !!! | AAATTTCATCTTTTATTCAG+TGG | + | chr1_3:7870754-7870773 | Msa0101290:CDS | 20.0% |
| !! | TTAAATTATGAAGAGTAACT+GGG | - | chr1_3:7870938-7870957 | Msa0101280:intron | 20.0% |
| !!! | TTGAAGATCCTTATATTTTT+TGG | + | chr1_3:7871807-7871826 | Msa0101290:intron | 20.0% |
| !! | AAGAAATCAAAGAAAATGTT+TGG | + | chr1_3:7872054-7872073 | Msa0101290:intron | 20.0% |
| !!! | TTTAGATTTTAATGTTGTAC+AGG | - | chr1_3:7872146-7872165 | Msa0101280:intron | 20.0% |
| !! | CAAAATAATAAGGAAACAAA+GGG | + | chr1_3:7872583-7872602 | Msa0101290:intron | 20.0% |
| !! | TAGATTTAACGTATGTTTTG+AGG | + | chr1_3:7865693-7865712 | None:intergenic | 25.0% |
| !! | TATAATGTGGTATTGGATTT+AGG | - | chr1_3:7865940-7865959 | Msa0101280:CDS | 25.0% |
| !! | ATAATGTGGTATTGGATTTA+GGG | - | chr1_3:7865941-7865960 | Msa0101280:CDS | 25.0% |
| !!! | GTTGAGTTGAGTTTTTTTTA+CGG | - | chr1_3:7866058-7866077 | Msa0101280:CDS | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | - | chr1_3:7866238-7866257 | Msa0101280:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | - | chr1_3:7866245-7866264 | Msa0101280:intron | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | - | chr1_3:7866401-7866420 | Msa0101280:intron | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | + | chr1_3:7866456-7866475 | None:intergenic | 25.0% |
| !!! | GCTATTTTTTCCATATCAAA+AGG | + | chr1_3:7866638-7866657 | None:intergenic | 25.0% |
| ! | TTACTAAAGAGACTAGAATA+TGG | - | chr1_3:7866951-7866970 | Msa0101280:intron | 25.0% |
| !!! | ACATGTGTTGTTTTTATTGT+TGG | + | chr1_3:7867047-7867066 | None:intergenic | 25.0% |
| ! | CAATAAAAACAACACATGTT+TGG | - | chr1_3:7867048-7867067 | Msa0101280:intron | 25.0% |
| ! | CATATTGTGCATTCATAATA+TGG | + | chr1_3:7867918-7867937 | None:intergenic | 25.0% |
| !!! | CAAATTCTGGTTTTGATATA+TGG | + | chr1_3:7868175-7868194 | None:intergenic | 25.0% |
| ! | TATATCAAAACCAGAATTTG+TGG | - | chr1_3:7868175-7868194 | Msa0101280:intron | 25.0% |
| !!! | AATTTTTGACTGCTATAAAG+GGG | + | chr1_3:7868227-7868246 | None:intergenic | 25.0% |
| !!! | CAATTTTTGACTGCTATAAA+GGG | + | chr1_3:7868228-7868247 | None:intergenic | 25.0% |
| !!! | TCAATTTTTGACTGCTATAA+AGG | + | chr1_3:7868229-7868248 | None:intergenic | 25.0% |
| ! | TGAGATTTCCAAATTTCATT+TGG | + | chr1_3:7868350-7868369 | None:intergenic | 25.0% |
| !!! | CATACTTTCGTTTTATTGTT+TGG | + | chr1_3:7868518-7868537 | None:intergenic | 25.0% |
| ! | CAAACAATAAAACGAAAGTA+TGG | - | chr1_3:7868516-7868535 | Msa0101280:intron | 25.0% |
| ! | TTTGGAAATTTAAACCTGAA+TGG | + | chr1_3:7869185-7869204 | None:intergenic | 25.0% |
| !! | ATTCAGGTTTAAATTTCCAA+AGG | - | chr1_3:7869184-7869203 | Msa0101280:intron | 25.0% |
| ! | ATTGTGAAATTGATGCTTAT+TGG | + | chr1_3:7869371-7869390 | Msa0101290:CDS | 25.0% |
| !!! | CAATTTTGAGATCATTACAT+TGG | + | chr1_3:7869456-7869475 | Msa0101290:CDS | 25.0% |
| ! | TTGATGTTCTTAGTACATAA+AGG | - | chr1_3:7866238-7866257 | Msa0101280:intron | 25.0% |
| ! | TCTTAGTACATAAAGGATAA+AGG | - | chr1_3:7866245-7866264 | Msa0101280:intron | 25.0% |
| ! | TAGAATTATCCCTTAATTGT+TGG | - | chr1_3:7866401-7866420 | Msa0101280:intron | 25.0% |
| ! | ATTAAAGTGGAATCAACAAT+TGG | + | chr1_3:7866456-7866475 | None:intergenic | 25.0% |
| ! | TATATTTGGATCATAACAGA+TGG | - | chr1_3:7869805-7869824 | Msa0101280:intron | 25.0% |
| ! | TATTTCAAAAGGGTTTGATT+AGG | - | chr1_3:7870266-7870285 | Msa0101280:intron | 25.0% |
| ! | CAGTATGATTCAAAAACTTA+AGG | - | chr1_3:7870371-7870390 | Msa0101280:intron | 25.0% |
| ! | TTCAAAAACTTAAGGGAAAA+AGG | - | chr1_3:7870379-7870398 | Msa0101280:intron | 25.0% |
| ! | TAACTTATAGTTAGGGTTTA+TGG | - | chr1_3:7870428-7870447 | Msa0101280:intron | 25.0% |
| ! | AAAGAAAAACAAAATGAGAG+AGG | - | chr1_3:7870606-7870625 | Msa0101280:intron | 25.0% |
| ! | AAGAAAAACAAAATGAGAGA+GGG | - | chr1_3:7870607-7870626 | Msa0101280:intron | 25.0% |
| !! | TTTTCATAGAATAAATGGGT+AGG | - | chr1_3:7870696-7870715 | Msa0101280:intron | 25.0% |
| ! | GTTAAATTATGAAGAGTAAC+TGG | - | chr1_3:7870937-7870956 | Msa0101280:intron | 25.0% |
| ! | TGATCTTCCAAAAAAACATA+AGG | - | chr1_3:7871000-7871019 | Msa0101280:intron | 25.0% |
| ! | ATGACAATCTAATGAAATAC+AGG | + | chr1_3:7871262-7871281 | Msa0101290:CDS | 25.0% |
| ! | TGATCATCCAAAAAAACATA+AGG | - | chr1_3:7871418-7871437 | Msa0101280:intron | 25.0% |
| !! | ACACTTATAATCTAAAGTCT+CGG | + | chr1_3:7871582-7871601 | Msa0101290:CDS | 25.0% |
| ! | GCAAAATAATAAGGAAACAA+AGG | + | chr1_3:7872584-7872603 | Msa0101290:intron | 25.0% |
| !! | CATAGTAAAAAGGTGTATTT+GGG | + | chr1_3:7872643-7872662 | Msa0101290:intron | 25.0% |
| !! | ACATAGTAAAAAGGTGTATT+TGG | + | chr1_3:7872644-7872663 | Msa0101290:intron | 25.0% |
| ! | AAACCTTCAACATAGTAAAA+AGG | + | chr1_3:7872653-7872672 | Msa0101290:intron | 25.0% |
| ! | GAGGAAATAACATATATTTC+AGG | + | chr1_3:7872685-7872704 | Msa0101290:intron | 25.0% |
| ! | TACACACAATCAATTAAAAG+AGG | + | chr1_3:7872704-7872723 | Msa0101290:intron | 25.0% |
| ! | TCAACTATCTGTAAAATTTC+TGG | - | chr1_3:7872780-7872799 | Msa0101280:CDS | 25.0% |
| ATGAATAAACCTTAGCATCA+CGG | + | chr1_3:7865825-7865844 | None:intergenic | 30.0% | |
| GTGAATAAGTTAATGCTGAA+AGG | - | chr1_3:7865994-7866013 | Msa0101280:CDS | 30.0% | |
| !!! | TGCTGAAAGGTTTTGTTAAT+TGG | - | chr1_3:7866007-7866026 | Msa0101280:CDS | 30.0% |
| !!! | AGTTGAGTTTTTTTTACGGA+TGG | - | chr1_3:7866062-7866081 | Msa0101280:CDS | 30.0% |
| TTAGAAAGGAATAAAAGCAG+TGG | - | chr1_3:7866091-7866110 | Msa0101280:CDS | 30.0% | |
| TCACTTGATCCAACAATTAA+GGG | + | chr1_3:7866413-7866432 | None:intergenic | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | + | chr1_3:7866443-7866462 | None:intergenic | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | + | chr1_3:7866444-7866463 | None:intergenic | 30.0% | |
| TTGATTCCACTTTAATGACT+TGG | - | chr1_3:7866460-7866479 | Msa0101280:intron | 30.0% | |
| !! | AGGACAAGGTTGATTTTAAT+GGG | + | chr1_3:7866519-7866538 | None:intergenic | 30.0% |
| GATATGGAAAAAATAGCCAA+CGG | - | chr1_3:7866641-7866660 | Msa0101280:intron | 30.0% | |
| ATGTTAGAAGTGAAACATTG+CGG | - | chr1_3:7866681-7866700 | Msa0101280:intron | 30.0% | |
| TGTATTGCAAAGAATGCTTA+TGG | + | chr1_3:7866891-7866910 | None:intergenic | 30.0% | |
| CAACATAGAAATGAAATAGG+TGG | - | chr1_3:7866909-7866928 | Msa0101280:intron | 30.0% | |
| TATGTTGAAGTGAATTGGTT+TGG | + | chr1_3:7867008-7867027 | None:intergenic | 30.0% | |
| ATGGTTATGTTGAAGTGAAT+TGG | + | chr1_3:7867013-7867032 | None:intergenic | 30.0% | |
| !!! | TGTGTTGTTTTTATTGTTGG+TGG | + | chr1_3:7867044-7867063 | None:intergenic | 30.0% |
| TGGGCATTAAAGAAGAAAAT+TGG | - | chr1_3:7867068-7867087 | Msa0101280:intron | 30.0% | |
| !!! | TGTTATTTTGGATGAGACTA+CGG | + | chr1_3:7867139-7867158 | None:intergenic | 30.0% |
| TTCATAATTCCCTTATCAGA+AGG | - | chr1_3:7867263-7867282 | Msa0101280:intron | 30.0% | |
| ! | CTTGATTTTCCTTCTGATAA+GGG | + | chr1_3:7867275-7867294 | None:intergenic | 30.0% |
| ! | TCTTGATTTTCCTTCTGATA+AGG | + | chr1_3:7867276-7867295 | None:intergenic | 30.0% |
| ! | GATTAATGAGGCGTTTAATT+GGG | + | chr1_3:7867354-7867373 | None:intergenic | 30.0% |
| ! | GTTTATAATGCTTTTGTCCT+GGG | + | chr1_3:7867395-7867414 | None:intergenic | 30.0% |
| ! | AGTTTATAATGCTTTTGTCC+TGG | + | chr1_3:7867396-7867415 | None:intergenic | 30.0% |
| TCTATGATATTTGCACTTGT+GGG | + | chr1_3:7867422-7867441 | None:intergenic | 30.0% | |
| ATCTATGATATTTGCACTTG+TGG | + | chr1_3:7867423-7867442 | None:intergenic | 30.0% | |
| AGAGGTGAATGAAGAAAATA+AGG | - | chr1_3:7867490-7867509 | Msa0101280:intron | 30.0% | |
| AACTTATGTCTTGGAATTCA+TGG | + | chr1_3:7867719-7867738 | None:intergenic | 30.0% | |
| TCTATTCTCAACTTATGTCT+TGG | + | chr1_3:7867728-7867747 | None:intergenic | 30.0% | |
| ! | AAGACATAAGTTGAGAATAG+AGG | - | chr1_3:7867727-7867746 | Msa0101280:intron | 30.0% |
| !! | CAAATTCTCTGAAACATCAA+AGG | + | chr1_3:7867792-7867811 | None:intergenic | 30.0% |
| AGATGTTTCAATTCAAGAGT+TGG | + | chr1_3:7867831-7867850 | None:intergenic | 30.0% | |
| CCACTATACTCTGTTATAAT+TGG | + | chr1_3:7867854-7867873 | None:intergenic | 30.0% | |
| CCAATTATAACAGAGTATAG+TGG | - | chr1_3:7867851-7867870 | Msa0101280:intron | 30.0% | |
| !! | AAGAATTATTGTTGGTGGTA+AGG | + | chr1_3:7868029-7868048 | None:intergenic | 30.0% |
| GTGTTAAGAATTATTGTTGG+TGG | + | chr1_3:7868034-7868053 | None:intergenic | 30.0% | |
| ! | TACGAATTTAGCTTATGCTT+GGG | + | chr1_3:7868104-7868123 | None:intergenic | 30.0% |
| GTACAAGTATTACAGTGTAT+GGG | + | chr1_3:7868292-7868311 | None:intergenic | 30.0% | |
| TGTACAAGTATTACAGTGTA+TGG | + | chr1_3:7868293-7868312 | None:intergenic | 30.0% | |
| TTCCAAATTTCATTTGGCAT+TGG | + | chr1_3:7868344-7868363 | None:intergenic | 30.0% | |
| TGGAAAAATGTCAGTGTTAA+CGG | + | chr1_3:7868469-7868488 | None:intergenic | 30.0% | |
| GAAATTTAAACCTGAATGGA+GGG | + | chr1_3:7869181-7869200 | None:intergenic | 30.0% | |
| CAGAAAAATACTTCAAGCAA+TGG | + | chr1_3:7869335-7869354 | None:intergenic | 30.0% | |
| TGAAATTGATGCTTATTGGT+GGG | + | chr1_3:7869367-7869386 | Msa0101290:CDS | 30.0% | |
| TCAATTTCACAATCAAACAC+CGG | - | chr1_3:7869378-7869397 | Msa0101280:intron | 30.0% | |
| AATTTCAAAGATGGTGATTC+CGG | + | chr1_3:7869400-7869419 | Msa0101290:CDS | 30.0% | |
| !! | CATCTTTGAAATTGGTTTAG+CGG | - | chr1_3:7869407-7869426 | Msa0101280:intron | 30.0% |
| !! | ATCTTTGAAATTGGTTTAGC+GGG | - | chr1_3:7869408-7869427 | Msa0101280:intron | 30.0% |
| TCACTTGATCCAACAATTAA+GGG | + | chr1_3:7866413-7866432 | None:intergenic | 30.0% | |
| CAACAATTGGTTAGAGAAAA+GGG | + | chr1_3:7866443-7866462 | None:intergenic | 30.0% | |
| TCAACAATTGGTTAGAGAAA+AGG | + | chr1_3:7866444-7866463 | None:intergenic | 30.0% | |
| TTGATTCCACTTTAATGACT+TGG | - | chr1_3:7866460-7866479 | Msa0101280:intron | 30.0% | |
| ! | AAGAGTCTCATTCATCATTT+TGG | + | chr1_3:7869834-7869853 | Msa0101290:CDS | 30.0% |
| TATTGTTCAACACTATGAAG+AGG | + | chr1_3:7869994-7870013 | Msa0101290:CDS | 30.0% | |
| AAGGAATATGACAAAAATGC+AGG | + | chr1_3:7870220-7870239 | Msa0101290:CDS | 30.0% | |
| ! | ACAGGTTTGGTTATTTCAAA+AGG | - | chr1_3:7870255-7870274 | Msa0101280:intron | 30.0% |
| ! | CAGGTTTGGTTATTTCAAAA+GGG | - | chr1_3:7870256-7870275 | Msa0101280:intron | 30.0% |
| AAAAGGGTTTGATTAGGTTA+TGG | - | chr1_3:7870272-7870291 | Msa0101280:intron | 30.0% | |
| TTAGGTTATGGAGAAATTGA+AGG | - | chr1_3:7870284-7870303 | Msa0101280:intron | 30.0% | |
| ! | GTTTTTGAATCATACTGTGT+TGG | + | chr1_3:7870368-7870387 | Msa0101290:CDS | 30.0% |
| ! | TTTCATCTTTTATTCAGTGG+CGG | + | chr1_3:7870751-7870770 | Msa0101290:CDS | 30.0% |
| TTGGAAGATCAATACTACAT+TGG | + | chr1_3:7870991-7871010 | Msa0101290:CDS | 30.0% | |
| TCTTCCAAAAAAACATAAGG+AGG | - | chr1_3:7871003-7871022 | Msa0101280:intron | 30.0% | |
| !!! | ACAACCTCCTTATGTTTTTT+TGG | + | chr1_3:7871010-7871029 | Msa0101290:CDS | 30.0% |
| GCATTGAGACTTTAGATTAT+AGG | - | chr1_3:7871154-7871173 | Msa0101280:intron | 30.0% | |
| TTGGATGATCAATACTACAT+TGG | + | chr1_3:7871409-7871428 | Msa0101290:CDS | 30.0% | |
| !!! | AGAAGCTCCTTATGTTTTTT+TGG | + | chr1_3:7871428-7871447 | Msa0101290:CDS | 30.0% |
| CTTTAGATTATAAGTGTGTC+CGG | - | chr1_3:7871585-7871604 | Msa0101280:intron | 30.0% | |
| TTGGATGAATAACACTACAT+TGG | + | chr1_3:7871788-7871807 | Msa0101290:intron | 30.0% | |
| AATTGAATTCATCCAATGAC+TGG | + | chr1_3:7871852-7871871 | Msa0101290:intron | 30.0% | |
| ! | TTTCTTTGATTTCTTTCCAC+TGG | - | chr1_3:7872059-7872078 | Msa0101280:intron | 30.0% |
| TTAATGTATTGAAGCCATAG+CGG | + | chr1_3:7872189-7872208 | Msa0101290:intron | 30.0% | |
| TCGTATCCCAAAGTTAATAA+GGG | + | chr1_3:7872216-7872235 | Msa0101290:intron | 30.0% | |
| TTCGTATCCCAAAGTTAATA+AGG | + | chr1_3:7872217-7872236 | Msa0101290:intron | 30.0% | |
| CTCAATATTCTAAACGTTGA+GGG | - | chr1_3:7872436-7872455 | Msa0101280:intron | 30.0% | |
| ! | AGTTTGGTTACTTTCAGTTT+CGG | - | chr1_3:7872510-7872529 | Msa0101280:intron | 30.0% |
| !! | TCCTTATTATTTTGCCAGTA+TGG | - | chr1_3:7872589-7872608 | Msa0101280:intron | 30.0% |
| TCCATACTGGCAAAATAATA+AGG | + | chr1_3:7872593-7872612 | Msa0101290:intron | 30.0% | |
| !! | TTATTTTGCCAGTATGGAAT+TGG | - | chr1_3:7872595-7872614 | Msa0101280:intron | 30.0% |
| ! | TATTTTGCCAGTATGGAATT+GGG | - | chr1_3:7872596-7872615 | Msa0101280:intron | 30.0% |
| ! | TAAAAAGGTGTATTTGGGTT+GGG | + | chr1_3:7872638-7872657 | Msa0101290:intron | 30.0% |
| ! | ACACCTTTTTACTATGTTGA+AGG | - | chr1_3:7872647-7872666 | Msa0101280:CDS | 30.0% |
| TACTATGTTGAAGGTTTCTT+TGG | - | chr1_3:7872656-7872675 | Msa0101280:CDS | 30.0% | |
| ! | ATCTGTAAAATTTCTGGAGA+TGG | - | chr1_3:7872786-7872805 | Msa0101280:CDS | 30.0% |
| ACAGTGAGAGAATGGAATTT+GGG | + | chr1_3:7865625-7865644 | None:intergenic | 35.0% | |
| TACAGTGAGAGAATGGAATT+TGG | + | chr1_3:7865626-7865645 | None:intergenic | 35.0% | |
| TACGTTAAATCTAGACTTCC+TGG | - | chr1_3:7865700-7865719 | Msa0101280:three_prime_UTR | 35.0% | |
| CATTAATTACCGTGATGCTA+AGG | - | chr1_3:7865813-7865832 | Msa0101280:three_prime_UTR | 35.0% | |
| ! | TTACACCATCCCAAACTTTT+TGG | + | chr1_3:7866127-7866146 | None:intergenic | 35.0% |
| CAATGGTTAACAAGAAGGAT+AGG | + | chr1_3:7866344-7866363 | None:intergenic | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | + | chr1_3:7866361-7866380 | None:intergenic | 35.0% | |
| GTCACTTGATCCAACAATTA+AGG | + | chr1_3:7866414-7866433 | None:intergenic | 35.0% | |
| !! | GACTTGGCTTTGCTTATATT+TGG | - | chr1_3:7866476-7866495 | Msa0101280:intron | 35.0% |
| !! | ACAAGGTTGATTTTAATGGG+GGG | + | chr1_3:7866516-7866535 | None:intergenic | 35.0% |
| !! | GACAAGGTTGATTTTAATGG+GGG | + | chr1_3:7866517-7866536 | None:intergenic | 35.0% |
| !! | GGACAAGGTTGATTTTAATG+GGG | + | chr1_3:7866518-7866537 | None:intergenic | 35.0% |
| !! | GAGGACAAGGTTGATTTTAA+TGG | + | chr1_3:7866520-7866539 | None:intergenic | 35.0% |
| TAAAATCAACCTTGTCCTCA+AGG | - | chr1_3:7866521-7866540 | Msa0101280:intron | 35.0% | |
| ATAAAGTAGCAACTTCCACA+TGG | - | chr1_3:7866568-7866587 | Msa0101280:intron | 35.0% | |
| !! | TGGATGTTTTATTGTCCATG+TGG | + | chr1_3:7866586-7866605 | None:intergenic | 35.0% |
| !! | ACTCTAAGGACCTTTTGATA+TGG | - | chr1_3:7866625-7866644 | Msa0101280:intron | 35.0% |
| !!! | GTGTTTTTGATTTCAACCGT+TGG | + | chr1_3:7866660-7866679 | None:intergenic | 35.0% |
| GCAATGTTTCACTTCTAACA+TGG | + | chr1_3:7866682-7866701 | None:intergenic | 35.0% | |
| TGACTCATCTATTGATGTCA+GGG | + | chr1_3:7866755-7866774 | None:intergenic | 35.0% | |
| ATGACTCATCTATTGATGTC+AGG | + | chr1_3:7866756-7866775 | None:intergenic | 35.0% | |
| CCTAAAGTTACAAACATTGG+TGG | + | chr1_3:7866796-7866815 | None:intergenic | 35.0% | |
| CCACCAATGTTTGTAACTTT+AGG | - | chr1_3:7866793-7866812 | Msa0101280:intron | 35.0% | |
| TGGCCTAAAGTTACAAACAT+TGG | + | chr1_3:7866799-7866818 | None:intergenic | 35.0% | |
| !! | TATGGCTCTAAGAACTTGTT+AGG | + | chr1_3:7866873-7866892 | None:intergenic | 35.0% |
| GAATATGGAACTCCATCTAT+TGG | - | chr1_3:7866966-7866985 | Msa0101280:intron | 35.0% | |
| ATCTATTGGTGCATTACTCA+GGG | - | chr1_3:7866980-7866999 | Msa0101280:intron | 35.0% | |
| !! | ATTGTTGGTGGCTATGTTAA+TGG | + | chr1_3:7867032-7867051 | None:intergenic | 35.0% |
| TCAGGTTTGACAAAATGGTT+TGG | + | chr1_3:7867107-7867126 | None:intergenic | 35.0% | |
| ! | GGGAATTATGAACTTGTTCA+TGG | + | chr1_3:7867255-7867274 | None:intergenic | 35.0% |
| GTGCATACAATGGTAGAATA+TGG | + | chr1_3:7867332-7867351 | None:intergenic | 35.0% | |
| GTTTAATTGGGTGCATACAA+TGG | + | chr1_3:7867342-7867361 | None:intergenic | 35.0% | |
| ! | GGATTAATGAGGCGTTTAAT+TGG | + | chr1_3:7867355-7867374 | None:intergenic | 35.0% |
| CTATGATATTTGCACTTGTG+GGG | + | chr1_3:7867421-7867440 | None:intergenic | 35.0% | |
| TTCTTCCACTAACTGAATCT+TGG | - | chr1_3:7867454-7867473 | Msa0101280:intron | 35.0% | |
| TCTTCCACTAACTGAATCTT+GGG | - | chr1_3:7867455-7867474 | Msa0101280:intron | 35.0% | |
| GCAAGTCAATCTTTCAATTC+TGG | + | chr1_3:7867581-7867600 | None:intergenic | 35.0% | |
| CTTGGAATTCATGGTAACTT+TGG | + | chr1_3:7867710-7867729 | None:intergenic | 35.0% | |
| !! | GTCTCTAGAACTATTCTCAA+AGG | + | chr1_3:7867896-7867915 | None:intergenic | 35.0% |
| AAGGAAATACACGGTGTAAT+GGG | + | chr1_3:7868010-7868029 | None:intergenic | 35.0% | |
| TAAGGAAATACACGGTGTAA+TGG | + | chr1_3:7868011-7868030 | None:intergenic | 35.0% | |
| ! | GGGGTGTTAAGAATTATTGT+TGG | + | chr1_3:7868037-7868056 | None:intergenic | 35.0% |
| ! | CTACGAATTTAGCTTATGCT+TGG | + | chr1_3:7868105-7868124 | None:intergenic | 35.0% |
| ! | CATTTTTGTGCCACAAATTC+TGG | + | chr1_3:7868188-7868207 | None:intergenic | 35.0% |
| TGCTATAAAGGGGATTTAGT+TGG | + | chr1_3:7868217-7868236 | None:intergenic | 35.0% | |
| GGAAGAAGAAAATGCTAAAG+TGG | + | chr1_3:7868263-7868282 | None:intergenic | 35.0% | |
| ! | ATTACAGTGTATGGGTTTTG+AGG | + | chr1_3:7868284-7868303 | None:intergenic | 35.0% |
| !! | ATTTCATTTGGCATTGGTCA+AGG | + | chr1_3:7868338-7868357 | None:intergenic | 35.0% |
| GACCAATGCCAAATGAAATT+TGG | - | chr1_3:7868339-7868358 | Msa0101280:intron | 35.0% | |
| ! | GTAAGGATTTTATGTGTGTG+AGG | - | chr1_3:7868394-7868413 | Msa0101280:intron | 35.0% |
| GTTTCAAATCAATGACTCCT+TGG | + | chr1_3:7868443-7868462 | None:intergenic | 35.0% | |
| ! | ACACTGACATTTTTCCAAAC+AGG | - | chr1_3:7868472-7868491 | Msa0101280:intron | 35.0% |
| ! | ACATTTTTCCAAACAGGTAG+TGG | - | chr1_3:7868478-7868497 | Msa0101280:intron | 35.0% |
| AACTACAAATCTACTTGACG+CGG | + | chr1_3:7868791-7868810 | None:intergenic | 35.0% | |
| ! | CCTTCAATTGATTTCAATGC+TGG | + | chr1_3:7868814-7868833 | None:intergenic | 35.0% |
| ! | CCAGCATTGAAATCAATTGA+AGG | - | chr1_3:7868811-7868830 | Msa0101280:intron | 35.0% |
| GCATTGAAATCAATTGAAGG+AGG | - | chr1_3:7868814-7868833 | Msa0101280:intron | 35.0% | |
| TGACGATTAAATTCTTCACC+TGG | - | chr1_3:7868845-7868864 | Msa0101280:intron | 35.0% | |
| GACGATTAAATTCTTCACCT+GGG | - | chr1_3:7868846-7868865 | Msa0101280:intron | 35.0% | |
| GTAACAGAATGTTCCTCTAT+TGG | - | chr1_3:7868880-7868899 | Msa0101280:intron | 35.0% | |
| ! | TTGCAACAGCTCAAGAATTT+TGG | - | chr1_3:7868972-7868991 | Msa0101280:intron | 35.0% |
| GGAAATTTAAACCTGAATGG+AGG | + | chr1_3:7869182-7869201 | None:intergenic | 35.0% | |
| GTGAAATTGATGCTTATTGG+TGG | + | chr1_3:7869368-7869387 | Msa0101290:CDS | 35.0% | |
| !! | GGAATCACCATCTTTGAAAT+TGG | - | chr1_3:7869399-7869418 | Msa0101280:intron | 35.0% |
| CGCTAAACCAATTTCAAAGA+TGG | + | chr1_3:7869409-7869428 | Msa0101290:CDS | 35.0% | |
| CAATGGTTAACAAGAAGGAT+AGG | + | chr1_3:7866344-7866363 | None:intergenic | 35.0% | |
| TCTTCTATAAAAGGGAGCAA+TGG | + | chr1_3:7866361-7866380 | None:intergenic | 35.0% | |
| GTCACTTGATCCAACAATTA+AGG | + | chr1_3:7866414-7866433 | None:intergenic | 35.0% | |
| !! | GACTTGGCTTTGCTTATATT+TGG | - | chr1_3:7866476-7866495 | Msa0101280:intron | 35.0% |
| ! | AGTCTCATTCATCATTTTGG+CGG | + | chr1_3:7869831-7869850 | Msa0101290:CDS | 35.0% |
| TATTGTTCAGCACTATGAAG+AGG | + | chr1_3:7870022-7870041 | Msa0101290:CDS | 35.0% | |
| CAGGTCTATACATGAAAGTA+TGG | + | chr1_3:7870201-7870220 | Msa0101290:CDS | 35.0% | |
| TCATATTCCTTCAATCACAG+AGG | - | chr1_3:7870229-7870248 | Msa0101280:intron | 35.0% | |
| TCTTAGCTGTTATCGTTGTT+TGG | + | chr1_3:7870344-7870363 | Msa0101290:CDS | 35.0% | |
| GGAAAAAGGAAAATCTAACG+AGG | - | chr1_3:7870393-7870412 | Msa0101280:intron | 35.0% | |
| AGGTTGTTAGCAAACATAAG+TGG | - | chr1_3:7871023-7871042 | Msa0101280:intron | 35.0% | |
| GGTTGTTAGCAAACATAAGT+GGG | - | chr1_3:7871024-7871043 | Msa0101280:intron | 35.0% | |
| !!! | GGTTTTAGAAAGGAAGTGAA+AGG | - | chr1_3:7871053-7871072 | Msa0101280:intron | 35.0% |
| CTTTAGATTATAGGTGTGTC+CGG | - | chr1_3:7871163-7871182 | Msa0101280:intron | 35.0% | |
| TGTGGTTACGTTCAATTTAC+TGG | - | chr1_3:7871226-7871245 | Msa0101280:intron | 35.0% | |
| AGCTTCTTACCAAACATAAG+TGG | - | chr1_3:7871441-7871460 | Msa0101280:intron | 35.0% | |
| GCTTCTTACCAAACATAAGT+GGG | - | chr1_3:7871442-7871461 | Msa0101280:intron | 35.0% | |
| CACTAACATTTGTCGTATAC+CGG | + | chr1_3:7871607-7871626 | Msa0101290:CDS | 35.0% | |
| TCTCAGTTGTTAGAATCCAA+CGG | - | chr1_3:7871894-7871913 | Msa0101280:intron | 35.0% | |
| !! | GTTTGGATGAAGAGTTTTGA+AGG | + | chr1_3:7872037-7872056 | Msa0101290:intron | 35.0% |
| AGGACTAATAAGAAAACCAG+TGG | + | chr1_3:7872078-7872097 | Msa0101290:intron | 35.0% | |
| TGATGACAGATAGCAACATA+AGG | + | chr1_3:7872098-7872117 | Msa0101290:intron | 35.0% | |
| GTTGTACAGGAATATCTTCA+AGG | - | chr1_3:7872159-7872178 | Msa0101280:intron | 35.0% | |
| GCTATGGCTTCAATACATTA+AGG | - | chr1_3:7872188-7872207 | Msa0101280:intron | 35.0% | |
| ! | TAAGGTGCCCTTATTAACTT+TGG | - | chr1_3:7872206-7872225 | Msa0101280:intron | 35.0% |
| ! | AAGGTGCCCTTATTAACTTT+GGG | - | chr1_3:7872207-7872226 | Msa0101280:intron | 35.0% |
| ! | CCTCAACGTTTAGAATATTG+AGG | + | chr1_3:7872438-7872457 | Msa0101290:intron | 35.0% |
| CCTCAATATTCTAAACGTTG+AGG | - | chr1_3:7872435-7872454 | Msa0101280:intron | 35.0% | |
| AATATTCTAAACGTTGAGGG+TGG | - | chr1_3:7872439-7872458 | Msa0101280:intron | 35.0% | |
| AGATACAGGGAAGAATGAAA+AGG | + | chr1_3:7872486-7872505 | Msa0101290:intron | 35.0% | |
| AACCAAACTACAGAGATACA+GGG | + | chr1_3:7872499-7872518 | Msa0101290:intron | 35.0% | |
| TAACCAAACTACAGAGATAC+AGG | + | chr1_3:7872500-7872519 | Msa0101290:intron | 35.0% | |
| ! | GTTTCGGAACTATTGATTGT+AGG | - | chr1_3:7872526-7872545 | Msa0101280:intron | 35.0% |
| ATTGATTGTAGGTTTCACTG+AGG | - | chr1_3:7872537-7872556 | Msa0101280:intron | 35.0% | |
| ATAATAAGGAAACAAAGGGC+AGG | + | chr1_3:7872579-7872598 | Msa0101290:intron | 35.0% | |
| TACATTTCCCAATTCCATAC+TGG | + | chr1_3:7872606-7872625 | Msa0101290:intron | 35.0% | |
| AGTATGGAATTGGGAAATGT+AGG | - | chr1_3:7872605-7872624 | Msa0101280:intron | 35.0% | |
| ! | GTAAAAAGGTGTATTTGGGT+TGG | + | chr1_3:7872639-7872658 | Msa0101290:intron | 35.0% |
| CATCTCAATACACTTGAACA+AGG | + | chr1_3:7872736-7872755 | Msa0101290:CDS | 35.0% | |
| TATAGTGTACACATGGTACA+AGG | + | chr1_3:7872821-7872840 | Msa0101290:CDS | 35.0% | |
| TGCATGTTATAGTGTACACA+TGG | + | chr1_3:7872828-7872847 | Msa0101290:CDS | 35.0% | |
| GGAAGATGTGAGAGATGATA+AGG | + | chr1_3:7865518-7865537 | None:intergenic | 40.0% | |
| !! | TGGTTTGGAAGAGATTTTGG+AGG | + | chr1_3:7865560-7865579 | None:intergenic | 40.0% |
| !!! | GGTTGGTTTGGAAGAGATTT+TGG | + | chr1_3:7865563-7865582 | None:intergenic | 40.0% |
| TTGCAGTTACAGTGAGAGAA+TGG | + | chr1_3:7865633-7865652 | None:intergenic | 40.0% | |
| !!! | TGTTTTGAGGTCAGCGATTT+CGG | + | chr1_3:7865680-7865699 | None:intergenic | 40.0% |
| GTTAAATCTAGACTTCCTGG+TGG | - | chr1_3:7865703-7865722 | Msa0101280:three_prime_UTR | 40.0% | |
| TTCGCTGCTCAAACTATCAT+CGG | - | chr1_3:7865727-7865746 | Msa0101280:three_prime_UTR | 40.0% | |
| ! | TATTGCTCGTGTTGTTCTTC+AGG | - | chr1_3:7865771-7865790 | Msa0101280:three_prime_UTR | 40.0% |
| TGTTGTTCTTCAGGAAGGAA+CGG | - | chr1_3:7865780-7865799 | Msa0101280:three_prime_UTR | 40.0% | |
| !!! | ACGGATGGAGTGTTTTAGAA+AGG | - | chr1_3:7866077-7866096 | Msa0101280:CDS | 40.0% |
| GAAAGGAATAAAAGCAGTGG+CGG | - | chr1_3:7866094-7866113 | Msa0101280:CDS | 40.0% | |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1_3:7866285-7866304 | Msa0101280:intron | 40.0% |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1_3:7866286-7866305 | Msa0101280:intron | 40.0% |
| GCAAAGCCAAGTCATTAAAG+TGG | + | chr1_3:7866469-7866488 | None:intergenic | 40.0% | |
| TTATCTTGACTCCAACCTTG+AGG | + | chr1_3:7866539-7866558 | None:intergenic | 40.0% | |
| CAAGGTTGGAGTCAAGATAA+TGG | - | chr1_3:7866539-7866558 | Msa0101280:intron | 40.0% | |
| TGGACAATAAAACATCCACC+AGG | - | chr1_3:7866588-7866607 | Msa0101280:intron | 40.0% | |
| ATCCCACAACTTGAACTCTA+AGG | - | chr1_3:7866611-7866630 | Msa0101280:intron | 40.0% | |
| !! | GTCCTTAGAGTTCAAGTTGT+GGG | + | chr1_3:7866616-7866635 | None:intergenic | 40.0% |
| TTGCATGCAAACAGAACCTT+TGG | - | chr1_3:7866710-7866729 | Msa0101280:intron | 40.0% | |
| GGAACATATCAAGACACCAA+AGG | + | chr1_3:7866729-7866748 | None:intergenic | 40.0% | |
| CATCTATTGATGTCAGGGTT+AGG | + | chr1_3:7866750-7866769 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGGTTCATGAGAG+TGG | + | chr1_3:7866819-7866838 | None:intergenic | 40.0% |
| ACTCTCATGAACCAAACTAG+TGG | - | chr1_3:7866818-7866837 | Msa0101280:intron | 40.0% | |
| !! | CTTGAGAAGTACCACTAGTT+TGG | + | chr1_3:7866832-7866851 | None:intergenic | 40.0% |
| !! | CTAAGAACTTGTTAGGTGTG+AGG | + | chr1_3:7866866-7866885 | None:intergenic | 40.0% |
| CTGAGTAATGCACCAATAGA+TGG | + | chr1_3:7866981-7867000 | None:intergenic | 40.0% | |
| CATCTATTGGTGCATTACTC+AGG | - | chr1_3:7866979-7866998 | Msa0101280:intron | 40.0% | |
| TGGCATCAGGTTTGACAAAA+TGG | + | chr1_3:7867112-7867131 | None:intergenic | 40.0% | |
| !!! | CTGTGGTAGTGGTGTTATTT+TGG | + | chr1_3:7867151-7867170 | None:intergenic | 40.0% |
| ATCATTCCCTGTTGCATCTA+TGG | - | chr1_3:7867199-7867218 | Msa0101280:intron | 40.0% | |
| ACAAGTCCATAGATGCAACA+GGG | + | chr1_3:7867208-7867227 | None:intergenic | 40.0% | |
| AAACGCCTCATTAATCCCAT+AGG | - | chr1_3:7867358-7867377 | Msa0101280:intron | 40.0% | |
| TGTACCCAAGATTCAGTTAG+TGG | + | chr1_3:7867462-7867481 | None:intergenic | 40.0% | |
| CTTGGGTACAGAAATAGAAG+AGG | - | chr1_3:7867472-7867491 | Msa0101280:intron | 40.0% | |
| CAATTAAAATGGCCACCTCA+TGG | - | chr1_3:7867513-7867532 | Msa0101280:intron | 40.0% | |
| CTTTCAATTCTGGTGACTCA+AGG | + | chr1_3:7867571-7867590 | None:intergenic | 40.0% | |
| GGAATTCATGGTAACTTTGG+TGG | + | chr1_3:7867707-7867726 | None:intergenic | 40.0% | |
| !! | GTTGGTGGTAAGGAAATACA+CGG | + | chr1_3:7868019-7868038 | None:intergenic | 40.0% |
| ! | TTTTATGTGTGTGAGGACGA+AGG | - | chr1_3:7868401-7868420 | Msa0101280:intron | 40.0% |
| AGGACGAAGGAAATCAAACA+AGG | - | chr1_3:7868414-7868433 | Msa0101280:intron | 40.0% | |
| GAAATCAAACAAGGATGCCA+AGG | - | chr1_3:7868423-7868442 | Msa0101280:intron | 40.0% | |
| CGACGAAATTTCATTCGAAG+TGG | + | chr1_3:7868603-7868622 | None:intergenic | 40.0% | |
| ! | AGATCGAAGCGTTCAAAAGA+CGG | + | chr1_3:7868629-7868648 | None:intergenic | 40.0% |
| !! | TGTGGTTTTCAGAAGAGCAT+TGG | + | chr1_3:7868706-7868725 | None:intergenic | 40.0% |
| !! | ATGTTCCTCTATTGGTTCCA+CGG | - | chr1_3:7868888-7868907 | Msa0101280:intron | 40.0% |
| AATTCTTGAGCTGTTGCAAG+AGG | + | chr1_3:7868971-7868990 | None:intergenic | 40.0% | |
| ! | TCATACTTGAGTTGTGCTGT+CGG | - | chr1_3:7869028-7869047 | Msa0101280:intron | 40.0% |
| TCCAGATCATCTTCATCATC+AGG | - | chr1_3:7869141-7869160 | Msa0101280:intron | 40.0% | |
| ! | ACCTGATGATGAAGATGATC+TGG | + | chr1_3:7869145-7869164 | None:intergenic | 40.0% |
| AGATCATCTTCATCATCAGG+TGG | - | chr1_3:7869144-7869163 | Msa0101280:intron | 40.0% | |
| GATCATCTTCATCATCAGGT+GGG | - | chr1_3:7869145-7869164 | Msa0101280:intron | 40.0% | |
| ATCATCTTCATCATCAGGTG+GGG | - | chr1_3:7869146-7869165 | Msa0101280:intron | 40.0% | |
| GGTAAAATAACCCTCCATTC+AGG | - | chr1_3:7869168-7869187 | Msa0101280:intron | 40.0% | |
| ! | CCTTCACTTCAGTTTTCCTT+TGG | + | chr1_3:7869203-7869222 | None:intergenic | 40.0% |
| CCAAAGGAAAACTGAAGTGA+AGG | - | chr1_3:7869200-7869219 | Msa0101280:intron | 40.0% | |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1_3:7866285-7866304 | Msa0101280:intron | 40.0% |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1_3:7866286-7866305 | Msa0101280:intron | 40.0% |
| GCAAAGCCAAGTCATTAAAG+TGG | + | chr1_3:7866469-7866488 | None:intergenic | 40.0% | |
| ! | CTGTTTTCCTCTGTGATTGA+AGG | + | chr1_3:7870239-7870258 | Msa0101290:CDS | 40.0% |
| CTTCAATCACAGAGGAAAAC+AGG | - | chr1_3:7870237-7870256 | Msa0101280:intron | 40.0% | |
| ATCACAGAGGAAAACAGGTT+TGG | - | chr1_3:7870242-7870261 | Msa0101280:intron | 40.0% | |
| ! | GGTTTATGGCTCTGTAGTAA+CGG | - | chr1_3:7870442-7870461 | Msa0101280:intron | 40.0% |
| CAAAATGAGAGAGGGATAGT+TGG | - | chr1_3:7870615-7870634 | Msa0101280:intron | 40.0% | |
| TAGAATAAATGGGTAGGCCA+TGG | - | chr1_3:7870702-7870721 | Msa0101280:intron | 40.0% | |
| TGTTAGCAAACATAAGTGGG+AGG | - | chr1_3:7871027-7871046 | Msa0101280:intron | 40.0% | |
| GTTAGCAAACATAAGTGGGA+GGG | - | chr1_3:7871028-7871047 | Msa0101280:intron | 40.0% | |
| GACTAACATTTGTCGTACAC+CGG | + | chr1_3:7871185-7871204 | Msa0101290:CDS | 40.0% | |
| TCTTACCAAACATAAGTGGG+AGG | - | chr1_3:7871445-7871464 | Msa0101280:intron | 40.0% | |
| CTTACCAAACATAAGTGGGA+GGG | - | chr1_3:7871446-7871465 | Msa0101280:intron | 40.0% | |
| ! | TGTGGTGACGTTCAATTTAC+AGG | - | chr1_3:7871648-7871667 | Msa0101280:intron | 40.0% |
| !! | TCCAATGACTGGCTTTGATT+GGG | + | chr1_3:7871841-7871860 | Msa0101290:intron | 40.0% |
| !! | ATCCAATGACTGGCTTTGAT+TGG | + | chr1_3:7871842-7871861 | Msa0101290:intron | 40.0% |
| !!! | AGTTTTGAAGGCAAAGTCGA+AGG | + | chr1_3:7872025-7872044 | Msa0101290:intron | 40.0% |
| ATCTTCAAGGAAATCCGCTA+TGG | - | chr1_3:7872172-7872191 | Msa0101280:intron | 40.0% | |
| TGATGTGTTTGTGAAAGCTG+AGG | - | chr1_3:7872245-7872264 | Msa0101280:intron | 40.0% | |
| GATGTGTTTGTGAAAGCTGA+GGG | - | chr1_3:7872246-7872265 | Msa0101280:intron | 40.0% | |
| !! | AGAGTACCTTTGAGACAACA+AGG | - | chr1_3:7872345-7872364 | Msa0101280:intron | 40.0% |
| !! | GAGTACCTTTGAGACAACAA+GGG | - | chr1_3:7872346-7872365 | Msa0101280:intron | 40.0% |
| TTCCCTGTATCTCTGTAGTT+TGG | - | chr1_3:7872494-7872513 | Msa0101280:intron | 40.0% | |
| TTCACTGAGGCCTTTGTATT+CGG | - | chr1_3:7872550-7872569 | Msa0101280:CDS | 40.0% | |
| !!! | ACATGCAGTTTTTAGAGCCA+AGG | - | chr1_3:7872841-7872860 | Msa0101280:CDS | 40.0% |
| !! | GGAAGAGATTTTGGAGGAGA+AGG | + | chr1_3:7865554-7865573 | None:intergenic | 45.0% |
| !!! | GTTTTGAGGTCAGCGATTTC+GGG | + | chr1_3:7865679-7865698 | None:intergenic | 45.0% |
| GCTCAAACTATCATCGGTAC+CGG | - | chr1_3:7865733-7865752 | Msa0101280:three_prime_UTR | 45.0% | |
| ! | AATAGCAGTTTTCCGACGAC+CGG | + | chr1_3:7865755-7865774 | None:intergenic | 45.0% |
| GTTGTTCTTCAGGAAGGAAC+GGG | - | chr1_3:7865781-7865800 | Msa0101280:three_prime_UTR | 45.0% | |
| GGAGCCAGACCAAAAAGTTT+GGG | - | chr1_3:7866115-7866134 | Msa0101280:CDS | 45.0% | |
| !! | CCATCCCAAACTTTTTGGTC+TGG | + | chr1_3:7866122-7866141 | None:intergenic | 45.0% |
| CCAGACCAAAAAGTTTGGGA+TGG | - | chr1_3:7866119-7866138 | Msa0101280:CDS | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | + | chr1_3:7866349-7866368 | None:intergenic | 45.0% | |
| ATCAACCTTGTCCTCAAGGT+TGG | - | chr1_3:7866525-7866544 | Msa0101280:intron | 45.0% | |
| !! | GGTCCTTAGAGTTCAAGTTG+TGG | + | chr1_3:7866617-7866636 | None:intergenic | 45.0% |
| !! | ATGAAATAGGTGGACTGTGC+AGG | - | chr1_3:7866919-7866938 | Msa0101280:intron | 45.0% |
| TTGGATGAGACTACGGCAAA+TGG | + | chr1_3:7867132-7867151 | None:intergenic | 45.0% | |
| TCTCACTAAAGCTGTGGTAG+TGG | + | chr1_3:7867162-7867181 | None:intergenic | 45.0% | |
| ! | ACCACAGCTTTAGTGAGACT+TGG | - | chr1_3:7867164-7867183 | Msa0101280:intron | 45.0% |
| ! | CCACAGCTTTAGTGAGACTT+GGG | - | chr1_3:7867165-7867184 | Msa0101280:intron | 45.0% |
| CACAAGTCCATAGATGCAAC+AGG | + | chr1_3:7867209-7867228 | None:intergenic | 45.0% | |
| CTGTTGCATCTATGGACTTG+TGG | - | chr1_3:7867207-7867226 | Msa0101280:intron | 45.0% | |
| CCTAGCCTATGGGATTAATG+AGG | + | chr1_3:7867366-7867385 | None:intergenic | 45.0% | |
| CCTCATTAATCCCATAGGCT+AGG | - | chr1_3:7867363-7867382 | Msa0101280:intron | 45.0% | |
| TGGGAAAATGCCTAGCCTAT+GGG | + | chr1_3:7867376-7867395 | None:intergenic | 45.0% | |
| ! | TTTGGTGGTCTCTCTTGTCA+TGG | + | chr1_3:7867692-7867711 | None:intergenic | 45.0% |
| ATCAAACAGTGACGCAGTTC+AGG | + | chr1_3:7867948-7867967 | None:intergenic | 45.0% | |
| !! | AATACACGGTGTAATGGGTG+AGG | + | chr1_3:7868005-7868024 | None:intergenic | 45.0% |
| CACCTTGCTGAGTAATTGTG+GGG | + | chr1_3:7868056-7868075 | None:intergenic | 45.0% | |
| CCACCTTGCTGAGTAATTGT+GGG | + | chr1_3:7868057-7868076 | None:intergenic | 45.0% | |
| CCACAATTACTCAGCAAGGT+GGG | - | chr1_3:7868055-7868074 | Msa0101280:intron | 45.0% | |
| !! | GCTTGGGCTGTTTTACTTCA+TGG | + | chr1_3:7868088-7868107 | None:intergenic | 45.0% |
| CAGTTTGTCCACTACCTGTT+TGG | + | chr1_3:7868489-7868508 | None:intergenic | 45.0% | |
| !! | CACTGCTCTGGAATTGTCAT+CGG | - | chr1_3:7868543-7868562 | Msa0101280:intron | 45.0% |
| !! | ACTGCTCTGGAATTGTCATC+GGG | - | chr1_3:7868544-7868563 | Msa0101280:intron | 45.0% |
| ! | GTCTTTTGAACGCTTCGATC+TGG | - | chr1_3:7868628-7868647 | Msa0101280:intron | 45.0% |
| ! | TTTTGAACGCTTCGATCTGG+CGG | - | chr1_3:7868631-7868650 | Msa0101280:intron | 45.0% |
| ! | CTCTTCTGAAAACCACACTC+TGG | - | chr1_3:7868709-7868728 | Msa0101280:intron | 45.0% |
| TCTTCACCTGGGATGATTCA+CGG | - | chr1_3:7868857-7868876 | Msa0101280:intron | 45.0% | |
| ! | GCAACAACTTCGTCTGAAGT+CGG | - | chr1_3:7868913-7868932 | Msa0101280:intron | 45.0% |
| !! | GAATTTTGGCACACGACTCT+CGG | - | chr1_3:7868986-7869005 | Msa0101280:intron | 45.0% |
| TCATCTTCATCATCAGGTGG+GGG | - | chr1_3:7869147-7869166 | Msa0101280:intron | 45.0% | |
| ! | ACGTCATCCATGGGTTACTT+GGG | + | chr1_3:7869229-7869248 | None:intergenic | 45.0% |
| ATGGTATCCACGTCATCCAT+GGG | + | chr1_3:7869238-7869257 | None:intergenic | 45.0% | |
| AATGGTATCCACGTCATCCA+TGG | + | chr1_3:7869239-7869258 | None:intergenic | 45.0% | |
| GTGGCTGCAATTGCAATGAA+AGG | + | chr1_3:7869285-7869304 | None:intergenic | 45.0% | |
| GGGAGCAATGGTTAACAAGA+AGG | + | chr1_3:7866349-7866368 | None:intergenic | 45.0% | |
| !! | TCTGTAGTAACGGACAGAGA+GGG | - | chr1_3:7870452-7870471 | Msa0101280:intron | 45.0% |
| ACGGAGAGATTGAAGATGGA+GGG | - | chr1_3:7870534-7870553 | Msa0101280:intron | 45.0% | |
| !! | AGAGAGGGATAGTTGGTGAA+TGG | - | chr1_3:7870622-7870641 | Msa0101280:intron | 45.0% |
| GTCCAATGATCAACAAGCGT+TGG | - | chr1_3:7870858-7870877 | Msa0101280:intron | 45.0% | |
| ! | CACCAACGCTTGTTGATCAT+TGG | + | chr1_3:7870863-7870882 | Msa0101290:CDS | 45.0% |
| TGAAGAGTAACTGGGCATCA+TGG | - | chr1_3:7870946-7870965 | Msa0101280:intron | 45.0% | |
| GACACTAACATGAACGCATG+TGG | - | chr1_3:7871208-7871227 | Msa0101280:intron | 45.0% | |
| GACACTAACACGAATGCATG+TGG | - | chr1_3:7871630-7871649 | Msa0101280:intron | 45.0% | |
| ! | GTCGAAGTGTCTGTGTTTCA+TGG | - | chr1_3:7871672-7871691 | Msa0101280:intron | 45.0% |
| !! | CCAATGACTGGCTTTGATTG+GGG | + | chr1_3:7871840-7871859 | Msa0101290:intron | 45.0% |
| ! | AGAAGCCCTTGTTGTCTCAA+AGG | + | chr1_3:7872354-7872373 | Msa0101290:intron | 45.0% |
| !! | GAGATTCTAGAGCTGTTGAG+AGG | - | chr1_3:7872379-7872398 | Msa0101280:intron | 45.0% |
| GCTGTTGAGAGGAAGAAAGT+TGG | - | chr1_3:7872390-7872409 | Msa0101280:intron | 45.0% | |
| ! | ATTTCTGGAGATGGTTGCTG+TGG | - | chr1_3:7872795-7872814 | Msa0101280:CDS | 45.0% |
| !! | AGAATAAAAAAATTAAATAA+TGG | - | chr1_3:7871539-7871558 | Msa0101280:intron | 5.0% |
| GGAGAAGGAGAGTGAAGAGA+GGG | + | chr1_3:7865539-7865558 | None:intergenic | 50.0% | |
| AGGAGAAGGAGAGTGAAGAG+AGG | + | chr1_3:7865540-7865559 | None:intergenic | 50.0% | |
| ! | GAGAGAGAGAGTGGTTGGTT+TGG | + | chr1_3:7865575-7865594 | None:intergenic | 50.0% |
| GAATTTGGGAGAGCGAGAGA+GGG | + | chr1_3:7865611-7865630 | None:intergenic | 50.0% | |
| ! | GCTCGTGTTGTTCTTCAGGA+AGG | - | chr1_3:7865775-7865794 | Msa0101280:three_prime_UTR | 50.0% |
| CGGAGCCAGACCAAAAAGTT+TGG | - | chr1_3:7866114-7866133 | Msa0101280:CDS | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | + | chr1_3:7866304-7866323 | None:intergenic | 50.0% | |
| TGACTCCAACCTTGAGGACA+AGG | + | chr1_3:7866533-7866552 | None:intergenic | 50.0% | |
| !! | TTCAAGTTGTGGGATCCTGG+TGG | + | chr1_3:7866606-7866625 | None:intergenic | 50.0% |
| !! | GAGTTCAAGTTGTGGGATCC+TGG | + | chr1_3:7866609-7866628 | None:intergenic | 50.0% |
| AGACTACGGCAAATGGCATC+AGG | + | chr1_3:7867125-7867144 | None:intergenic | 50.0% | |
| CCCAAGTCTCACTAAAGCTG+TGG | + | chr1_3:7867168-7867187 | None:intergenic | 50.0% | |
| CTGGGAAAATGCCTAGCCTA+TGG | + | chr1_3:7867377-7867396 | None:intergenic | 50.0% | |
| ! | CATAGGCTAGGCATTTTCCC+AGG | - | chr1_3:7867375-7867394 | Msa0101280:intron | 50.0% |
| AATGGCCACCTCATGGAGTT+TGG | - | chr1_3:7867520-7867539 | Msa0101280:intron | 50.0% | |
| TCTGGTGACTCAAGGCTGAT+GGG | + | chr1_3:7867563-7867582 | None:intergenic | 50.0% | |
| TTCTGGTGACTCAAGGCTGA+TGG | + | chr1_3:7867564-7867583 | None:intergenic | 50.0% | |
| !! | TGTAATGGGTGAGGAAGGTC+TGG | + | chr1_3:7867996-7868015 | None:intergenic | 50.0% |
| CACCCCACAATTACTCAGCA+AGG | - | chr1_3:7868051-7868070 | Msa0101280:intron | 50.0% | |
| CCCACAATTACTCAGCAAGG+TGG | - | chr1_3:7868054-7868073 | Msa0101280:intron | 50.0% | |
| CCCACCTTGCTGAGTAATTG+TGG | + | chr1_3:7868058-7868077 | None:intergenic | 50.0% | |
| AAGTATGGAGTCCACTGCTC+TGG | - | chr1_3:7868531-7868550 | Msa0101280:intron | 50.0% | |
| CGATGACAATTCCAGAGCAG+TGG | + | chr1_3:7868545-7868564 | None:intergenic | 50.0% | |
| !! | CTCTGGAATTGTCATCGGGT+GGG | - | chr1_3:7868548-7868567 | Msa0101280:intron | 50.0% |
| !! | GAGCATTGGAATGATCGCAG+CGG | + | chr1_3:7868692-7868711 | None:intergenic | 50.0% |
| AACATCGCAACACCAGAGTG+TGG | + | chr1_3:7868724-7868743 | None:intergenic | 50.0% | |
| ACTTGACGCGGATACGAAGA+AGG | + | chr1_3:7868779-7868798 | None:intergenic | 50.0% | |
| CTTCACCTGGGATGATTCAC+GGG | - | chr1_3:7868858-7868877 | Msa0101280:intron | 50.0% | |
| TGTTACCCGTGAATCATCCC+AGG | + | chr1_3:7868866-7868885 | None:intergenic | 50.0% | |
| GAATCGAGATCCCTAACAGC+AGG | - | chr1_3:7869066-7869085 | Msa0101280:intron | 50.0% | |
| AGATCCCTAACAGCAGGAGA+CGG | - | chr1_3:7869072-7869091 | Msa0101280:intron | 50.0% | |
| ACATCCGTCTCCTGCTGTTA+GGG | + | chr1_3:7869079-7869098 | None:intergenic | 50.0% | |
| AACATCCGTCTCCTGCTGTT+AGG | + | chr1_3:7869080-7869099 | None:intergenic | 50.0% | |
| TCACCTTGCTGCAACTGTTG+TGG | - | chr1_3:7869111-7869130 | Msa0101280:intron | 50.0% | |
| GAACCACAACAGTTGCAGCA+AGG | + | chr1_3:7869117-7869136 | None:intergenic | 50.0% | |
| ! | AAGGCATCCCAAGTAACCCA+TGG | - | chr1_3:7869219-7869238 | Msa0101280:intron | 50.0% |
| ! | CACGTCATCCATGGGTTACT+TGG | + | chr1_3:7869230-7869249 | None:intergenic | 50.0% |
| CAAGTAACCCATGGATGACG+TGG | - | chr1_3:7869228-7869247 | Msa0101280:intron | 50.0% | |
| CTCTCACATGGTGGCTTCAA+TGG | + | chr1_3:7869257-7869276 | None:intergenic | 50.0% | |
| AGAGGCAGAGAAGATGACAG+TGG | + | chr1_3:7869304-7869323 | None:intergenic | 50.0% | |
| ACTGTCATCTTCTCTGCCTC+TGG | - | chr1_3:7869303-7869322 | Msa0101280:intron | 50.0% | |
| CAAGCAATGGCTCATACCAG+AGG | + | chr1_3:7869322-7869341 | None:intergenic | 50.0% | |
| GTCTCTTCTCTCTCTCCCTT+TGG | + | chr1_3:7866304-7866323 | None:intergenic | 50.0% | |
| !! | CTCTGTAGTAACGGACAGAG+AGG | - | chr1_3:7870451-7870470 | Msa0101280:intron | 50.0% |
| GTCGACGGAGAGATTGAAGA+TGG | - | chr1_3:7870530-7870549 | Msa0101280:intron | 50.0% | |
| GACGGAGAGATTGAAGATGG+AGG | - | chr1_3:7870533-7870552 | Msa0101280:intron | 50.0% | |
| !! | GGGATAGTTGGTGAATGGCA+TGG | - | chr1_3:7870627-7870646 | Msa0101280:intron | 50.0% |
| !! | AGTTGGTGAATGGCATGGCA+TGG | - | chr1_3:7870632-7870651 | Msa0101280:intron | 50.0% |
| AGCAAACATAAGTGGGAGGG+AGG | - | chr1_3:7871031-7871050 | Msa0101280:intron | 50.0% | |
| GCAAACATAAGTGGGAGGGA+GGG | - | chr1_3:7871032-7871051 | Msa0101280:intron | 50.0% | |
| !!! | TGGGAGGGAGGGTTTTAGAA+AGG | - | chr1_3:7871043-7871062 | Msa0101280:intron | 50.0% |
| ACCAAACATAAGTGGGAGGG+AGG | - | chr1_3:7871449-7871468 | Msa0101280:intron | 50.0% | |
| CCAAACATAAGTGGGAGGGA+GGG | - | chr1_3:7871450-7871469 | Msa0101280:intron | 50.0% | |
| !!! | TGGGAGGGAGGGTTTTAGAA+AGG | - | chr1_3:7871043-7871062 | Msa0101280:intron | 50.0% |
| CCCCAATCAAAGCCAGTCAT+TGG | - | chr1_3:7871837-7871856 | Msa0101280:intron | 50.0% | |
| TACCTCTGCAGTTCAGAGGT+TGG | + | chr1_3:7871920-7871939 | Msa0101290:intron | 50.0% | |
| GTGTTTGTGAAAGCTGAGGG+TGG | - | chr1_3:7872249-7872268 | Msa0101280:intron | 50.0% | |
| TTTGTGAAAGCTGAGGGTGG+TGG | - | chr1_3:7872252-7872271 | Msa0101280:intron | 50.0% | |
| CAACGCACGAGCAATACCAA+GGG | + | chr1_3:7872304-7872323 | Msa0101290:intron | 50.0% | |
| TATTGCTCGTGCGTTGCTGA+AGG | - | chr1_3:7872308-7872327 | Msa0101280:intron | 50.0% | |
| GCGTTGCTGAAGGTTAGTGA+AGG | - | chr1_3:7872318-7872337 | Msa0101280:intron | 50.0% | |
| GGGCAGGATTCCGAATACAA+AGG | + | chr1_3:7872563-7872582 | Msa0101290:intron | 50.0% | |
| GAGAGAGGGAGAAGGTTCTG+GGG | + | chr1_3:7865597-7865616 | None:intergenic | 55.0% | |
| CGAGAGAGGGAGAAGGTTCT+GGG | + | chr1_3:7865598-7865617 | None:intergenic | 55.0% | |
| GGAATTTGGGAGAGCGAGAG+AGG | + | chr1_3:7865612-7865631 | None:intergenic | 55.0% | |
| !! | GAGGTCAGCGATTTCGGGTT+CGG | + | chr1_3:7865674-7865693 | None:intergenic | 55.0% |
| GTTTGAGCAGCGAATCCACC+AGG | + | chr1_3:7865721-7865740 | None:intergenic | 55.0% | |
| !! | CTATCATCGGTACCGGTCGT+CGG | - | chr1_3:7865740-7865759 | Msa0101280:three_prime_UTR | 55.0% |
| GAGTGCCAAACTCCATGAGG+TGG | + | chr1_3:7867528-7867547 | None:intergenic | 55.0% | |
| GCTGAGTGCCAAACTCCATG+AGG | + | chr1_3:7867531-7867550 | None:intergenic | 55.0% | |
| CAAGGCTGATGGGAGTGGAA+TGG | + | chr1_3:7867553-7867572 | None:intergenic | 55.0% | |
| TGACTCAAGGCTGATGGGAG+TGG | + | chr1_3:7867558-7867577 | None:intergenic | 55.0% | |
| !! | CACGGTGTAATGGGTGAGGA+AGG | + | chr1_3:7868001-7868020 | None:intergenic | 55.0% |
| !! | GCTCTGGAATTGTCATCGGG+TGG | - | chr1_3:7868547-7868566 | Msa0101280:intron | 55.0% |
| GAATTGTCATCGGGTGGGTG+TGG | - | chr1_3:7868553-7868572 | Msa0101280:intron | 55.0% | |
| ! | ACGCTTCGATCTGGCGGTTT+TGG | - | chr1_3:7868637-7868656 | Msa0101280:intron | 55.0% |
| !! | CTTCGATCTGGCGGTTTTGG+TGG | - | chr1_3:7868640-7868659 | Msa0101280:intron | 55.0% |
| TGCGTCCGTGGAACCAATAG+AGG | + | chr1_3:7868896-7868915 | None:intergenic | 55.0% | |
| AGACGAAGTTGTTGCGTCCG+TGG | + | chr1_3:7868908-7868927 | None:intergenic | 55.0% | |
| AGAGGAGATAGACGCTACCG+AGG | + | chr1_3:7868953-7868972 | None:intergenic | 55.0% | |
| !! | CTGTCGGTTTGAGTCAGTCG+TGG | - | chr1_3:7869044-7869063 | Msa0101280:intron | 55.0% |
| TGAAGCCACCATGTGAGAGC+TGG | - | chr1_3:7869258-7869277 | Msa0101280:intron | 55.0% | |
| GAAGCCACCATGTGAGAGCT+GGG | - | chr1_3:7869259-7869278 | Msa0101280:intron | 55.0% | |
| TGAAAGGCCCAGCTCTCACA+TGG | + | chr1_3:7869269-7869288 | None:intergenic | 55.0% | |
| AACGGACAGAGAGGGAGAGA+TGG | - | chr1_3:7870460-7870479 | Msa0101280:intron | 55.0% | |
| CGCGAGAGTTGCAAGTGAGA+GGG | - | chr1_3:7870508-7870527 | Msa0101280:intron | 55.0% | |
| GTTGCAAGTGAGAGGGTCGA+CGG | - | chr1_3:7870515-7870534 | Msa0101280:intron | 55.0% | |
| GTGAATGGCATGGCATGGCA+TGG | - | chr1_3:7870637-7870656 | Msa0101280:intron | 55.0% | |
| CCCTCCCTCCCACTTATGTT+TGG | + | chr1_3:7871035-7871054 | Msa0101290:CDS | 55.0% | |
| ! | GGCTTTGATTGGGGCAGAAG+AGG | + | chr1_3:7871831-7871850 | Msa0101290:intron | 55.0% |
| CAGCTACCTCTGCAGTTCAG+AGG | + | chr1_3:7871924-7871943 | Msa0101290:intron | 55.0% | |
| CTGAACTGCAGAGGTAGCTG+AGG | - | chr1_3:7871924-7871943 | Msa0101280:intron | 55.0% | |
| GCAACGCACGAGCAATACCA+AGG | + | chr1_3:7872305-7872324 | Msa0101290:intron | 55.0% | |
| CTGGGGAGAGAGAGAGTGGT+TGG | + | chr1_3:7865580-7865599 | None:intergenic | 60.0% | |
| !! | GGTTCTGGGGAGAGAGAGAG+TGG | + | chr1_3:7865584-7865603 | None:intergenic | 60.0% |
| GCGAGAGAGGGAGAAGGTTC+TGG | + | chr1_3:7865599-7865618 | None:intergenic | 60.0% | |
| !! | AGCGATTTCGGGTTCGGCAG+GGG | + | chr1_3:7865668-7865687 | None:intergenic | 60.0% |
| !! | CAGCGATTTCGGGTTCGGCA+GGG | + | chr1_3:7865669-7865688 | None:intergenic | 60.0% |
| !! | TCAGCGATTTCGGGTTCGGC+AGG | + | chr1_3:7865670-7865689 | None:intergenic | 60.0% |
| TTGTCATCGGGTGGGTGTGG+TGG | - | chr1_3:7868556-7868575 | Msa0101280:intron | 60.0% | |
| !! | GTGTGGTGGTGGTCGAAGCA+TGG | - | chr1_3:7868570-7868589 | Msa0101280:intron | 60.0% |
| GTGGTGGTCGAAGCATGGTG+AGG | - | chr1_3:7868575-7868594 | Msa0101280:intron | 60.0% | |
| !! | CGATCTGGCGGTTTTGGTGG+CGG | - | chr1_3:7868643-7868662 | Msa0101280:intron | 60.0% |
| ! | GGTGGAGGCATGCTGCATTC+CGG | - | chr1_3:7868664-7868683 | Msa0101280:intron | 60.0% |
| AAGGCCCAGCTCTCACATGG+TGG | + | chr1_3:7869266-7869285 | None:intergenic | 60.0% | |
| GCGCGAGAGTTGCAAGTGAG+AGG | - | chr1_3:7870507-7870526 | Msa0101280:intron | 60.0% | |
| GAGGGAGTTGCGAGCAGTGA+TGG | - | chr1_3:7870552-7870571 | Msa0101280:intron | 60.0% | |
| GGAGTTGCGAGCAGTGATGG+TGG | - | chr1_3:7870555-7870574 | Msa0101280:intron | 60.0% | |
| ! | GCAGTTCAGAGGTTGGCCGT+TGG | + | chr1_3:7871913-7871932 | Msa0101290:intron | 60.0% |
| GGCCAACCTCTGAACTGCAG+AGG | - | chr1_3:7871915-7871934 | Msa0101280:intron | 60.0% | |
| TGGCCTCTCTGGTCAAGCTC+AGG | - | chr1_3:7872272-7872291 | Msa0101280:intron | 60.0% | |
| TCGCCTGAGCTTGACCAGAG+AGG | + | chr1_3:7872278-7872297 | Msa0101290:intron | 60.0% | |
| CAAGCTCAGGCGATCACCCT+TGG | - | chr1_3:7872285-7872304 | Msa0101280:intron | 60.0% | |
| GGGAGAGCGAGAGAGGGAGA+AGG | + | chr1_3:7865605-7865624 | None:intergenic | 65.0% | |
| TCATCGGGTGGGTGTGGTGG+TGG | - | chr1_3:7868559-7868578 | Msa0101280:intron | 65.0% | |
| !!! | TCTGGCGGTTTTGGTGGCGG+TGG | - | chr1_3:7868646-7868665 | Msa0101280:intron | 65.0% |
| TGGAATGATCGCAGCGGCGC+CGG | + | chr1_3:7868686-7868705 | None:intergenic | 65.0% | |
| !! | CGGAAGTGCTTCGCTCGCCT+CGG | - | chr1_3:7868933-7868952 | Msa0101280:intron | 65.0% |
| !! | GTGTGGACTGGGACTGGCCA+TGG | + | chr1_3:7870722-7870741 | Msa0101290:CDS | 65.0% |
| !! | AGCCACGTGTGGACTGGGAC+TGG | + | chr1_3:7870728-7870747 | Msa0101290:CDS | 65.0% |
| ! | TTCAGTGGCGGAGCCACGTG+TGG | + | chr1_3:7870739-7870758 | Msa0101290:CDS | 65.0% |
| !!! | GGCGGTTTTGGTGGCGGTGG+AGG | - | chr1_3:7868649-7868668 | Msa0101280:intron | 70.0% |
| GGCCAGTCCCAGTCCACACG+TGG | - | chr1_3:7870723-7870742 | Msa0101280:intron | 70.0% | |
| GGCGGAGCCACGTGTGGACT+GGG | + | chr1_3:7870733-7870752 | Msa0101290:CDS | 70.0% | |
| TGGCGGAGCCACGTGTGGAC+TGG | + | chr1_3:7870734-7870753 | Msa0101290:CDS | 70.0% | |
| ! | GCTGAGGGTGGTGGCCTCTC+TGG | - | chr1_3:7872261-7872280 | Msa0101280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7865505 | 7872879 | 7865505 | ID=Msa0101280;Name=Msa0101280 |
| chr1_3 | mRNA | 7865505 | 7872879 | 7865505 | ID=Msa0101280-mRNA-1;Parent=Msa0101280;Name=Msa0101280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|0|0.33|3|424|189 |
| chr1_3 | exon | 7865505 | 7866216 | 7865505 | ID=Msa0101280-mRNA-1:exon:3088;Parent=Msa0101280-mRNA-1 |
| chr1_3 | exon | 7872550 | 7872587 | 7872550 | ID=Msa0101280-mRNA-1:exon:3087;Parent=Msa0101280-mRNA-1 |
| chr1_3 | exon | 7872636 | 7872879 | 7872636 | ID=Msa0101280-mRNA-1:exon:3086;Parent=Msa0101280-mRNA-1 |
| chr1_3 | CDS | 7872636 | 7872879 | 7872636 | ID=Msa0101280-mRNA-1:cds;Parent=Msa0101280-mRNA-1 |
| chr1_3 | CDS | 7872550 | 7872587 | 7872550 | ID=Msa0101280-mRNA-1:cds;Parent=Msa0101280-mRNA-1 |
| chr1_3 | CDS | 7865929 | 7866216 | 7865929 | ID=Msa0101280-mRNA-1:cds;Parent=Msa0101280-mRNA-1 |
| chr1_3 | three_prime_UTR | 7865505 | 7865928 | 7865505 | ID=Msa0101280-mRNA-1:three_prime_utr;Parent=Msa0101280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
