Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011240 | sp|Q70DU8|AL3H1_ARATH | 70.355 | 479 | 142 | 0 | 8 | 486 | 4 | 482 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011240 | Msa0060250 | 0.842257 | 2.888154e-58 | -8.615850e-47 |
| Msa0011240 | Msa0105060 | 0.811327 | 7.400203e-51 | -8.615850e-47 |
| Msa0011240 | Msa1327770 | 0.814441 | 1.538185e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011240 | MtrunA17_Chr1g0159811 | 95.024 | 422 | 21 | 0 | 1 | 422 | 1 | 422 | 0.0 | 827 |
| Msa0011240 | MtrunA17_Chr3g0124811 | 78.468 | 483 | 104 | 0 | 6 | 488 | 8 | 490 | 0.0 | 811 |
| Msa0011240 | MtrunA17_Chr8g0384741 | 66.872 | 486 | 161 | 0 | 3 | 488 | 56 | 541 | 0.0 | 696 |
| Msa0011240 | MtrunA17_Chr8g0372381 | 50.554 | 451 | 223 | 0 | 20 | 470 | 13 | 463 | 4.64e-168 | 483 |
| Msa0011240 | MtrunA17_Chr2g0328781 | 47.599 | 479 | 248 | 1 | 11 | 486 | 15 | 493 | 1.32e-157 | 457 |
| Msa0011240 | MtrunA17_Chr4g0032441 | 52.423 | 454 | 213 | 1 | 20 | 470 | 9 | 462 | 2.53e-148 | 432 |
| Msa0011240 | MtrunA17_Chr3g0129271 | 48.677 | 189 | 94 | 1 | 183 | 368 | 31 | 219 | 1.50e-57 | 191 |
| Msa0011240 | MtrunA17_Chr2g0294411 | 25.333 | 450 | 304 | 10 | 34 | 466 | 106 | 540 | 1.23e-37 | 145 |
| Msa0011240 | MtrunA17_Chr4g0059521 | 29.640 | 361 | 239 | 8 | 95 | 445 | 130 | 485 | 4.02e-36 | 140 |
| Msa0011240 | MtrunA17_Chr3g0118121 | 29.917 | 361 | 238 | 7 | 95 | 445 | 130 | 485 | 1.27e-35 | 138 |
| Msa0011240 | MtrunA17_Chr2g0310091 | 26.555 | 418 | 288 | 10 | 38 | 446 | 123 | 530 | 7.88e-35 | 137 |
| Msa0011240 | MtrunA17_Chr3g0118081 | 29.178 | 353 | 233 | 8 | 103 | 445 | 170 | 515 | 1.90e-33 | 132 |
| Msa0011240 | MtrunA17_Chr4g0059221 | 29.738 | 343 | 231 | 7 | 111 | 446 | 196 | 535 | 7.17e-32 | 128 |
| Msa0011240 | MtrunA17_Chr3g0117861 | 30.321 | 343 | 229 | 8 | 111 | 446 | 194 | 533 | 1.86e-30 | 124 |
| Msa0011240 | MtrunA17_Chr8g0365221 | 29.598 | 348 | 233 | 9 | 107 | 446 | 189 | 532 | 2.53e-30 | 124 |
| Msa0011240 | MtrunA17_Chr8g0390651 | 29.395 | 347 | 219 | 12 | 115 | 446 | 159 | 494 | 8.89e-29 | 119 |
| Msa0011240 | MtrunA17_Chr8g0390631 | 28.212 | 397 | 251 | 15 | 73 | 446 | 100 | 485 | 1.40e-28 | 118 |
| Msa0011240 | MtrunA17_Chr6g0485301 | 28.857 | 350 | 227 | 11 | 110 | 446 | 153 | 493 | 2.84e-26 | 111 |
| Msa0011240 | MtrunA17_Chr4g0074171 | 25.333 | 450 | 299 | 12 | 1 | 429 | 35 | 468 | 9.94e-25 | 107 |
| Msa0011240 | MtrunA17_Chr4g0009161 | 46.789 | 109 | 54 | 2 | 183 | 287 | 116 | 224 | 1.06e-24 | 102 |
| Msa0011240 | MtrunA17_Chr6g0485311 | 27.551 | 392 | 250 | 15 | 77 | 445 | 110 | 490 | 1.78e-24 | 106 |
| Msa0011240 | MtrunA17_Chr1g0149961 | 24.719 | 445 | 308 | 11 | 1 | 429 | 35 | 468 | 3.79e-21 | 96.3 |
| Msa0011240 | MtrunA17_Chr2g0279751 | 26.817 | 399 | 244 | 15 | 37 | 406 | 68 | 447 | 7.43e-21 | 95.5 |
| Msa0011240 | MtrunA17_Chr4g0049641 | 26.623 | 308 | 205 | 8 | 113 | 406 | 174 | 474 | 1.65e-18 | 88.2 |
| Msa0011240 | MtrunA17_Chr2g0300801 | 23.615 | 343 | 244 | 8 | 113 | 442 | 152 | 489 | 5.73e-17 | 83.6 |
| Msa0011240 | MtrunA17_Chr1g0159821 | 49.275 | 69 | 35 | 0 | 8 | 76 | 8 | 76 | 7.69e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011240 | AT1G44170.1 | 70.355 | 479 | 142 | 0 | 8 | 486 | 4 | 482 | 0.0 | 731 |
| Msa0011240 | AT1G44170.2 | 70.355 | 479 | 142 | 0 | 8 | 486 | 4 | 482 | 0.0 | 731 |
| Msa0011240 | AT1G44170.3 | 73.966 | 411 | 107 | 0 | 76 | 486 | 9 | 419 | 0.0 | 662 |
| Msa0011240 | AT4G34240.4 | 65.839 | 483 | 165 | 0 | 6 | 488 | 50 | 532 | 0.0 | 658 |
| Msa0011240 | AT4G34240.1 | 65.839 | 483 | 165 | 0 | 6 | 488 | 65 | 547 | 0.0 | 657 |
| Msa0011240 | AT4G34240.3 | 70.720 | 403 | 118 | 0 | 86 | 488 | 3 | 405 | 0.0 | 587 |
| Msa0011240 | AT4G36250.1 | 47.021 | 470 | 246 | 1 | 20 | 486 | 12 | 481 | 4.40e-163 | 470 |
| Msa0011240 | AT4G34240.2 | 66.258 | 326 | 110 | 0 | 6 | 331 | 65 | 390 | 1.41e-152 | 440 |
| Msa0011240 | AT3G66658.1 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 1.57e-40 | 153 |
| Msa0011240 | AT3G66658.2 | 26.569 | 478 | 316 | 10 | 34 | 484 | 106 | 575 | 2.99e-40 | 153 |
| Msa0011240 | AT1G74920.2 | 29.781 | 366 | 241 | 9 | 95 | 449 | 125 | 485 | 9.15e-40 | 150 |
| Msa0011240 | AT1G74920.1 | 29.781 | 366 | 241 | 9 | 95 | 449 | 130 | 490 | 1.09e-39 | 150 |
| Msa0011240 | AT1G23800.1 | 28.315 | 445 | 301 | 11 | 12 | 446 | 89 | 525 | 3.20e-36 | 141 |
| Msa0011240 | AT1G79440.1 | 27.924 | 419 | 281 | 11 | 38 | 446 | 114 | 521 | 6.20e-35 | 137 |
| Msa0011240 | AT3G48170.1 | 28.488 | 344 | 231 | 7 | 112 | 445 | 147 | 485 | 9.23e-35 | 136 |
| Msa0011240 | AT3G48000.1 | 27.434 | 452 | 296 | 14 | 12 | 446 | 93 | 529 | 4.11e-29 | 120 |
| Msa0011240 | AT3G24503.1 | 27.114 | 343 | 236 | 9 | 113 | 446 | 155 | 492 | 3.76e-27 | 114 |
| Msa0011240 | AT2G24270.2 | 24.888 | 446 | 306 | 13 | 1 | 429 | 75 | 508 | 3.14e-21 | 97.1 |
| Msa0011240 | AT2G24270.4 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 3.76e-21 | 96.7 |
| Msa0011240 | AT2G24270.3 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 4.91e-21 | 96.3 |
| Msa0011240 | AT2G24270.1 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 4.91e-21 | 96.3 |
| Msa0011240 | AT1G54100.2 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 2.94e-20 | 94.0 |
| Msa0011240 | AT1G54100.1 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 2.94e-20 | 94.0 |
| Msa0011240 | AT2G14170.1 | 25.648 | 386 | 252 | 15 | 78 | 445 | 218 | 586 | 2.67e-18 | 88.2 |
| Msa0011240 | AT2G14170.2 | 25.648 | 386 | 252 | 15 | 78 | 445 | 109 | 477 | 2.89e-18 | 87.8 |
| Msa0011240 | AT2G14170.3 | 25.797 | 345 | 224 | 13 | 78 | 406 | 218 | 546 | 1.08e-16 | 83.2 |
| Msa0011240 | AT1G23800.2 | 29.020 | 255 | 168 | 7 | 12 | 259 | 89 | 337 | 1.46e-16 | 82.0 |
Find 127 sgRNAs with CRISPR-Local
Find 515 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATGATGACAAAGTTTC+TGG | 0.156174 | 1_1:-16971930 | Msa0011240:CDS |
| GCTATAATTCGTGCCTTATT+TGG | 0.169978 | 1_1:-16970471 | Msa0011240:CDS |
| CAATGTTTGGATCTTGCTTT+TGG | 0.204382 | 1_1:-16968559 | Msa0011240:three_prime_UTR |
| CGATCGCTTGATAAAGCTTT+TGG | 0.222465 | 1_1:-16971949 | Msa0011240:CDS |
| TTATCACTTGATCCAGTAAT+TGG | 0.232948 | 1_1:-16973058 | Msa0011240:CDS |
| GCAATTCATACTTTGCCTTT+TGG | 0.268675 | 1_1:-16970669 | Msa0011240:CDS |
| TGATTCAAATATCAACTTAC+AGG | 0.279419 | 1_1:-16972480 | Msa0011240:intron |
| TATGAACCAGGCGTTTAAAT+AGG | 0.290063 | 1_1:+16968514 | None:intergenic |
| GGGTGTGATGAGGGTGGTAC+TGG | 0.302195 | 1_1:+16976658 | None:intergenic |
| ATTCCAAGACAAAGAATTCT+AGG | 0.305149 | 1_1:+16970443 | None:intergenic |
| GCTGCAATAGCCCCAATTAC+TGG | 0.305450 | 1_1:+16973046 | None:intergenic |
| ATTTATCATGACGAATGAAT+TGG | 0.307322 | 1_1:-16976522 | Msa0011240:exon |
| ATTCTAGGACCTTCCAAATA+AGG | 0.309348 | 1_1:+16970458 | None:intergenic |
| TTTGTTGTTATGATATAATC+TGG | 0.316109 | 1_1:+16972167 | None:intergenic |
| TTAAAATAGACTAAGTCATT+AGG | 0.327474 | 1_1:-16968617 | Msa0011240:three_prime_UTR |
| GATTAGCCCTACTGTTCTAT+TGG | 0.328993 | 1_1:-16971760 | Msa0011240:CDS |
| CATTTGGCAAGTATTTATTC+AGG | 0.329683 | 1_1:-16970406 | Msa0011240:three_prime_UTR |
| AGCTTTGATGTGATAAATTC+AGG | 0.353189 | 1_1:-16971375 | Msa0011240:CDS |
| GACTGTTTCTGCTGGTGGTT+TGG | 0.353589 | 1_1:-16971289 | Msa0011240:CDS |
| CATCAATCTCATCTTTGTAT+TGG | 0.356661 | 1_1:+16970521 | None:intergenic |
| ATTGGTTGAGTTCGTAGAAA+TGG | 0.358356 | 1_1:+16976576 | None:intergenic |
| TCCAGCCACATCATCGTTGC+TGG | 0.362338 | 1_1:-16972987 | Msa0011240:CDS |
| GTTTCTGGTAAGATTGTTCA+TGG | 0.366193 | 1_1:-16971915 | Msa0011240:CDS |
| CCTCCAAGCTCCAGCACAAC+TGG | 0.367836 | 1_1:+16972521 | None:intergenic |
| GAGGATAAAGTAGATTATAT+TGG | 0.372992 | 1_1:+16976558 | None:intergenic |
| AGCCATTGTGTTAGTGCTCT+TGG | 0.380826 | 1_1:-16968647 | Msa0011240:three_prime_UTR |
| AAATGGAGGATAAATGAATT+TGG | 0.384706 | 1_1:+16976593 | None:intergenic |
| CTGAGACAAACATTTGGTTC+TGG | 0.403023 | 1_1:-16976449 | Msa0011240:CDS |
| CTCATCTTTGTATTGGTGTA+TGG | 0.403429 | 1_1:+16970528 | None:intergenic |
| TATCACTTGATCCAGTAATT+GGG | 0.409496 | 1_1:-16973057 | Msa0011240:CDS |
| ACACCAGTTGTGCTGGAGCT+TGG | 0.416382 | 1_1:-16972524 | Msa0011240:CDS |
| GGTCCTAGAATTCTTTGTCT+TGG | 0.419629 | 1_1:-16970446 | Msa0011240:exon |
| ATATTTGAATCAACAACAAC+TGG | 0.421798 | 1_1:+16972491 | None:intergenic |
| TGTGTTAGTGCTCTTGGCTA+AGG | 0.422890 | 1_1:-16968641 | Msa0011240:three_prime_UTR |
| CTTAATTCGTACCGTGATGA+TGG | 0.427177 | 1_1:+16971683 | None:intergenic |
| CGTGACAGAGACTTGATTTG+TGG | 0.428537 | 1_1:+16968703 | None:intergenic |
| GAGGGTGGTACTGGTGGTGC+AGG | 0.429415 | 1_1:+16976667 | None:intergenic |
| AGATAATAACCGAACCTCAT+AGG | 0.441099 | 1_1:+16976298 | None:intergenic |
| ATAATGAGCGAAGAGATATT+TGG | 0.444128 | 1_1:-16971717 | Msa0011240:CDS |
| TCGTTGCTGGCAAAACTGTT+AGG | 0.451153 | 1_1:-16972974 | Msa0011240:CDS |
| TTTGTTAAGACTGTTTCTGC+TGG | 0.453254 | 1_1:-16971297 | Msa0011240:CDS |
| GATTGTTCATGGAGGTGAAA+AGG | 0.454910 | 1_1:-16971904 | Msa0011240:CDS |
| GTGTAGGGTGGGTGTGATGA+GGG | 0.457194 | 1_1:+16976649 | None:intergenic |
| GATACTATTTCAGCTGAAGA+AGG | 0.460660 | 1_1:+16973446 | None:intergenic |
| GCATTGGATGGCTCCGGAAA+AGG | 0.463175 | 1_1:-16973592 | Msa0011240:intron |
| ATTGCAAGGTGGCAACTAGA+AGG | 0.464455 | 1_1:-16972238 | Msa0011240:intron |
| GGAGTAGGTGAGAGTGGAGT+GGG | 0.469025 | 1_1:-16970645 | Msa0011240:CDS |
| CTGTATTACTGCAACAAAAG+TGG | 0.474056 | 1_1:-16972895 | Msa0011240:CDS |
| ATATATGCAGCAAGAGGCTT+CGG | 0.476234 | 1_1:+16971351 | None:intergenic |
| AATGAACTGAGACAAACATT+TGG | 0.478069 | 1_1:-16976455 | Msa0011240:CDS |
| GCACCTTACACCAGTTGTGC+TGG | 0.485174 | 1_1:-16972531 | Msa0011240:CDS |
| CAGGCGTTTAAATAGGCTAT+GGG | 0.486103 | 1_1:+16968521 | None:intergenic |
| CCATAGCCTATTTAAACGCC+TGG | 0.488360 | 1_1:-16968520 | Msa0011240:three_prime_UTR |
| GTTAAGACTGTTTCTGCTGG+TGG | 0.490673 | 1_1:-16971294 | Msa0011240:CDS |
| CTCATCTATAAGAGTTGTTG+AGG | 0.493781 | 1_1:-16972936 | Msa0011240:CDS |
| CCAGTTGTGCTGGAGCTTGG+AGG | 0.497518 | 1_1:-16972521 | Msa0011240:CDS |
| CACTCAAGGAATTGAAGCAT+TGG | 0.498600 | 1_1:-16973608 | Msa0011240:CDS |
| GAAAGAAGAGGACAAAGTGT+AGG | 0.498630 | 1_1:+16976633 | None:intergenic |
| CCAGGCGTTTAAATAGGCTA+TGG | 0.504067 | 1_1:+16968520 | None:intergenic |
| GAAGGATAATCGCTGGAAAG+TGG | 0.505649 | 1_1:-16972220 | Msa0011240:CDS |
| TAGGGTGGGTGTGATGAGGG+TGG | 0.507553 | 1_1:+16976652 | None:intergenic |
| CTCATGTAAAACTGCACTCA+AGG | 0.507865 | 1_1:-16973622 | Msa0011240:CDS |
| GAGATTGATGAAGGCTCTCA+TGG | 0.510072 | 1_1:-16970508 | Msa0011240:CDS |
| GCTCCAGCACAACTGGTGTA+AGG | 0.510660 | 1_1:+16972528 | None:intergenic |
| GGAAAGTGGGGTTGCAACAA+TGG | 0.510938 | 1_1:-16972206 | Msa0011240:CDS |
| TACAAAGATGAGATTGATGA+AGG | 0.513208 | 1_1:-16970517 | Msa0011240:CDS |
| TGTGATGAGGGTGGTACTGG+TGG | 0.519146 | 1_1:+16976661 | None:intergenic |
| TAATTCGTGCCTTATTTGGA+AGG | 0.524002 | 1_1:-16970467 | Msa0011240:CDS |
| AAGAGTGGCACGCATTGTTA+TGG | 0.524412 | 1_1:-16972567 | Msa0011240:CDS |
| AAGGATAATCGCTGGAAAGT+GGG | 0.525366 | 1_1:-16972219 | Msa0011240:CDS |
| ATTGAAGCATTGGATGGCTC+CGG | 0.525858 | 1_1:-16973598 | Msa0011240:CDS |
| AAAAGACTATGCTCCTAAGT+TGG | 0.527792 | 1_1:-16972147 | Msa0011240:intron |
| AAGAGGACAAAGTGTAGGGT+GGG | 0.529942 | 1_1:+16976638 | None:intergenic |
| CAATGAAGCGGGATCCATGC+TGG | 0.534188 | 1_1:-16976480 | Msa0011240:CDS |
| ATGAAGGCTCTCATGGGTGG+TGG | 0.534832 | 1_1:-16970501 | Msa0011240:CDS |
| GCCAGCAACGATGATGTGGC+TGG | 0.536814 | 1_1:+16972986 | None:intergenic |
| TTTGGAGGAGTAGGTGAGAG+TGG | 0.537231 | 1_1:-16970651 | Msa0011240:CDS |
| GGGACATCCAATAGAACAGT+AGG | 0.538615 | 1_1:+16971753 | None:intergenic |
| TCTCAGTTCATTCACCAGCA+TGG | 0.539045 | 1_1:+16976466 | None:intergenic |
| CTCTCACCTACTCCTCCAAA+AGG | 0.540508 | 1_1:+16970654 | None:intergenic |
| GAAGAGGACAAAGTGTAGGG+TGG | 0.540632 | 1_1:+16976637 | None:intergenic |
| AAAGAAGAGGACAAAGTGTA+GGG | 0.542113 | 1_1:+16976634 | None:intergenic |
| TGTGTTTGAAGAGAAAGAAG+AGG | 0.543838 | 1_1:+16976621 | None:intergenic |
| TCTTGAAACTGTCGCCTATG+AGG | 0.543885 | 1_1:-16976312 | Msa0011240:intron |
| GTAATTGGGGCTATTGCAGC+TGG | 0.545653 | 1_1:-16973043 | Msa0011240:CDS |
| ATCACTTGATCCAGTAATTG+GGG | 0.548933 | 1_1:-16973056 | Msa0011240:CDS |
| AATATGTTCGACAATGAAGC+GGG | 0.550123 | 1_1:-16976491 | Msa0011240:CDS |
| ATCTTTGTATTGGTGTATGG+TGG | 0.551950 | 1_1:+16970531 | None:intergenic |
| TTATTCTCAAGCACAAGTCA+TGG | 0.557388 | 1_1:+16970337 | None:intergenic |
| TCATCTATAAGAGTTGTTGA+GGG | 0.559074 | 1_1:-16972935 | Msa0011240:CDS |
| AGGAGTAGGTGAGAGTGGAG+TGG | 0.559793 | 1_1:-16970646 | Msa0011240:CDS |
| TGTATTACTGCAACAAAAGT+GGG | 0.565567 | 1_1:-16972894 | Msa0011240:CDS |
| GCAACTAGAAGGATAATCGC+TGG | 0.565895 | 1_1:-16972227 | Msa0011240:CDS |
| GTAAATATATATGCAGCAAG+AGG | 0.571237 | 1_1:+16971345 | None:intergenic |
| GGTTGAGTTCGTAGAAATGG+AGG | 0.571556 | 1_1:+16976579 | None:intergenic |
| TTAATTCGTACCGTGATGAT+GGG | 0.573561 | 1_1:+16971684 | None:intergenic |
| AGTGTAGGGTGGGTGTGATG+AGG | 0.574651 | 1_1:+16976648 | None:intergenic |
| AATCAAGTCTCTGTCACGAT+TGG | 0.576333 | 1_1:-16968698 | Msa0011240:three_prime_UTR |
| ACCGTGATGATGGGAAGTAA+TGG | 0.581585 | 1_1:+16971693 | None:intergenic |
| CAAGGAATTGAAGCATTGGA+TGG | 0.593249 | 1_1:-16973604 | Msa0011240:CDS |
| CATAGGCGACAGTTTCAAGA+GGG | 0.597623 | 1_1:+16976315 | None:intergenic |
| TAGGCGACAGTTTCAAGAGG+GGG | 0.599399 | 1_1:+16976317 | None:intergenic |
| AAATTGGACAATAAAATACA+AGG | 0.604748 | 1_1:+16970380 | None:intergenic |
| TAAATATGTTACTATGAACC+AGG | 0.605342 | 1_1:+16968502 | None:intergenic |
| AGCCAAGAGCACTAACACAA+TGG | 0.605381 | 1_1:+16968645 | None:intergenic |
| AGGATAATCGCTGGAAAGTG+GGG | 0.609873 | 1_1:-16972218 | Msa0011240:CDS |
| GTGGCTGGAGAAATTTCTGA+TGG | 0.612827 | 1_1:+16973001 | None:intergenic |
| GAATATGTTCGACAATGAAG+CGG | 0.619480 | 1_1:-16976492 | Msa0011240:CDS |
| TATTGCAGCTGGTAATGCTG+TGG | 0.620073 | 1_1:-16973032 | Msa0011240:CDS |
| AAAACTGTTAGGAGAATACA+TGG | 0.624224 | 1_1:-16972963 | Msa0011240:CDS |
| TCCATTACTTCCCATCATCA+CGG | 0.627032 | 1_1:-16971694 | Msa0011240:intron |
| TACAAACGACAAGAAGCTCA+AGG | 0.637163 | 1_1:-16971325 | Msa0011240:CDS |
| GAAATAGTATCTGAACCACT+TGG | 0.643478 | 1_1:-16973434 | Msa0011240:CDS |
| AGTGGAGTGGGTGCATACCA+TGG | 0.646385 | 1_1:-16970633 | Msa0011240:CDS |
| GGACATCCAATAGAACAGTA+GGG | 0.647357 | 1_1:+16971754 | None:intergenic |
| ATGATCAACACAACTCCAAG+TGG | 0.650557 | 1_1:+16973419 | None:intergenic |
| GCTTTATCAAGCGATCGAAG+TGG | 0.653845 | 1_1:+16971955 | None:intergenic |
| TTGTGTTGATCATCTCTGCA+TGG | 0.653993 | 1_1:-16973409 | Msa0011240:CDS |
| AGATTGATGAAGGCTCTCAT+GGG | 0.665748 | 1_1:-16970507 | Msa0011240:CDS |
| TCATAGGCGACAGTTTCAAG+AGG | 0.669261 | 1_1:+16976314 | None:intergenic |
| CTCATTATCAGAGAATCACG+CGG | 0.673973 | 1_1:+16971732 | None:intergenic |
| TTGATGAAGGCTCTCATGGG+TGG | 0.678752 | 1_1:-16970504 | Msa0011240:CDS |
| ATAAATCAAGAAACAGCGAG+AGG | 0.701264 | 1_1:+16976539 | None:intergenic |
| TCTGGTAAGATTGTTCATGG+AGG | 0.703693 | 1_1:-16971912 | Msa0011240:CDS |
| ATAGGCGACAGTTTCAAGAG+GGG | 0.706757 | 1_1:+16976316 | None:intergenic |
| AGGCGTTTAAATAGGCTATG+GGG | 0.707596 | 1_1:+16968522 | None:intergenic |
| TCATTATCAGAGAATCACGC+GGG | 0.717383 | 1_1:+16971733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAATTTGCATTTTTT+TGG | - | chr1_1:16969732-16969751 | Msa0011240:intron | 10.0% |
| !!! | TTAAGTATATCTTTTTAAAA+TGG | - | chr1_1:16969879-16969898 | Msa0011240:intron | 10.0% |
| !!! | TAATAATTTTTTTCATATCA+TGG | + | chr1_1:16971208-16971227 | None:intergenic | 10.0% |
| !!! | AAATATTTTAACATACAAAA+TGG | + | chr1_1:16971763-16971782 | None:intergenic | 10.0% |
| !! | AAAAAAAATAATTAAGATGT+AGG | + | chr1_1:16975313-16975332 | None:intergenic | 10.0% |
| !! | ACTATTCATAATATTAAAAA+TGG | - | chr1_1:16975919-16975938 | Msa0011240:intron | 10.0% |
| !! | CTATTCATAATATTAAAAAT+GGG | - | chr1_1:16975920-16975939 | Msa0011240:intron | 10.0% |
| !! | AAAATTACATTGTAATTAAA+AGG | + | chr1_1:16976114-16976133 | None:intergenic | 10.0% |
| !!! | TTATTAGTATTATTCTTTTG+TGG | - | chr1_1:16968890-16968909 | Msa0011240:intron | 15.0% |
| !!! | TCATTTATTGTTGTTATTTA+TGG | - | chr1_1:16969041-16969060 | Msa0011240:intron | 15.0% |
| !!! | CATTTATTGTTGTTATTTAT+GGG | - | chr1_1:16969042-16969061 | Msa0011240:intron | 15.0% |
| !! | AACATAAAAGCTTATTATTT+GGG | + | chr1_1:16969443-16969462 | None:intergenic | 15.0% |
| !! | TAACATAAAAGCTTATTATT+TGG | + | chr1_1:16969444-16969463 | None:intergenic | 15.0% |
| !! | TTTATGTAATATTCATAAGT+TGG | + | chr1_1:16969532-16969551 | None:intergenic | 15.0% |
| !!! | TAAAAATCCAAACTTAATTT+TGG | + | chr1_1:16969698-16969717 | None:intergenic | 15.0% |
| !!! | CAAACATTATCTTTAATTTT+GGG | + | chr1_1:16970518-16970537 | None:intergenic | 15.0% |
| !! | TGAAATAAATATCATTACTA+TGG | + | chr1_1:16970688-16970707 | None:intergenic | 15.0% |
| !!! | ATTTGTGTTATTTTAGTTTT+TGG | - | chr1_1:16970855-16970874 | Msa0011240:intron | 15.0% |
| !! | TCATTTCATTAGAAAATATA+TGG | + | chr1_1:16974172-16974191 | None:intergenic | 15.0% |
| !! | GAAATTTATTCAAATAAAAG+TGG | - | chr1_1:16974239-16974258 | Msa0011240:intron | 15.0% |
| !!! | ATTTTATTGTCCAATTTTTT+TGG | - | chr1_1:16974766-16974785 | Msa0011240:intron | 15.0% |
| !! | TTACAAATATATTGTATCTA+TGG | + | chr1_1:16975850-16975869 | None:intergenic | 15.0% |
| !! | ATCTGAATTCAAATAAATGA+TGG | - | chr1_1:16969827-16969846 | Msa0011240:intron | 20.0% |
| !! | ACTATTTAACAATACAAAGT+TGG | + | chr1_1:16970068-16970087 | None:intergenic | 20.0% |
| !!! | CCAAACATTATCTTTAATTT+TGG | + | chr1_1:16970519-16970538 | None:intergenic | 20.0% |
| !! | CCAAAATTAAAGATAATGTT+TGG | - | chr1_1:16970516-16970535 | Msa0011240:CDS | 20.0% |
| !! | TTAAAGATAATGTTTGGATT+TGG | - | chr1_1:16970522-16970541 | Msa0011240:CDS | 20.0% |
| !!! | TTTGATAGCAAACTAATATT+AGG | - | chr1_1:16971159-16971178 | Msa0011240:intron | 20.0% |
| !!! | ACATTTTGAATACTTTTAAC+AGG | - | chr1_1:16971262-16971281 | Msa0011240:intron | 20.0% |
| !!! | CATTTTGAATACTTTTAACA+GGG | - | chr1_1:16971263-16971282 | Msa0011240:intron | 20.0% |
| !! | TATTTATATCTTCTCATACT+TGG | - | chr1_1:16971462-16971481 | Msa0011240:intron | 20.0% |
| !! | TATGGTTTATAATTCTGAAT+TGG | - | chr1_1:16972319-16972338 | Msa0011240:intron | 20.0% |
| !! | TTACTCAAATAAGTAATTGT+TGG | - | chr1_1:16972535-16972554 | Msa0011240:CDS | 20.0% |
| !!! | TAAGTAATTGTTGGTTTTTT+AGG | - | chr1_1:16972544-16972563 | Msa0011240:CDS | 20.0% |
| !!! | TTTGTTGTTATGATATAATC+TGG | + | chr1_1:16972976-16972995 | None:intergenic | 20.0% |
| !! | TTTATTTAGTGTTTAGTGTT+TGG | - | chr1_1:16973060-16973079 | Msa0011240:CDS | 20.0% |
| !!! | ATTTTATGGAAAGAATCAAT+TGG | - | chr1_1:16973128-16973147 | Msa0011240:intron | 20.0% |
| !! | TGTCAAAAATTGTATTGTTA+TGG | - | chr1_1:16974082-16974101 | Msa0011240:intron | 20.0% |
| !!! | ATCATGCATTTATTTTCATT+TGG | - | chr1_1:16974718-16974737 | Msa0011240:intron | 20.0% |
| !! | AAATTGGACAATAAAATACA+AGG | + | chr1_1:16974763-16974782 | None:intergenic | 20.0% |
| !! | TAAGTTCAAACCAAAAAAAT+TGG | + | chr1_1:16974779-16974798 | None:intergenic | 20.0% |
| !!! | TCTTCTTTATTTCATATCAA+AGG | + | chr1_1:16975093-16975112 | None:intergenic | 20.0% |
| !! | TTGTAATTATAAGCACAAAA+TGG | - | chr1_1:16975331-16975350 | Msa0011240:intron | 20.0% |
| !!! | ATAATGTCTATTTTAGAGAT+CGG | - | chr1_1:16976070-16976089 | Msa0011240:intron | 20.0% |
| !!! | TAATTAAAAGGTGTATTTCT+AGG | + | chr1_1:16976102-16976121 | None:intergenic | 20.0% |
| !! | AAATTGCACAAATTATTAAG+GGG | + | chr1_1:16976213-16976232 | None:intergenic | 20.0% |
| !! | GAAATTGCACAAATTATTAA+GGG | + | chr1_1:16976214-16976233 | None:intergenic | 20.0% |
| !! | AGAAATTGCACAAATTATTA+AGG | + | chr1_1:16976215-16976234 | None:intergenic | 20.0% |
| !!! | TGTTATAGTTTTGTTTTTCA+AGG | - | chr1_1:16976248-16976267 | Msa0011240:intron | 20.0% |
| !! | TGTTGAAATAATACATTATG+GGG | + | chr1_1:16976408-16976427 | None:intergenic | 20.0% |
| !! | GTGTTGAAATAATACATTAT+GGG | + | chr1_1:16976409-16976428 | None:intergenic | 20.0% |
| !! | TGTGTTGAAATAATACATTA+TGG | + | chr1_1:16976410-16976429 | None:intergenic | 20.0% |
| !! | TTAAAATAGACTAAGTCATT+AGG | - | chr1_1:16976523-16976542 | Msa0011240:exon | 20.0% |
| !!! | TTTTTTACAAGATCAAACTA+GGG | + | chr1_1:16976559-16976578 | None:intergenic | 20.0% |
| !!! | ATTTTTTACAAGATCAAACT+AGG | + | chr1_1:16976560-16976579 | None:intergenic | 20.0% |
| !! | CTTGTAAAAAATTCAATGTT+TGG | - | chr1_1:16976568-16976587 | Msa0011240:five_prime_UTR | 20.0% |
| ! | AAATGGAGGATAAATGAATT+TGG | + | chr1_1:16968550-16968569 | None:intergenic | 25.0% |
| ! | GAGGATAAAGTAGATTATAT+TGG | + | chr1_1:16968585-16968604 | None:intergenic | 25.0% |
| ! | ATTTATCATGACGAATGAAT+TGG | - | chr1_1:16968618-16968637 | Msa0011240:three_prime_UTR | 25.0% |
| ! | AGTTTAAAAGCTTAAAAAGC+TGG | + | chr1_1:16968756-16968775 | None:intergenic | 25.0% |
| ! | TTAACGATGAAGATATTGTT+AGG | + | chr1_1:16968959-16968978 | None:intergenic | 25.0% |
| !!! | ATCTACTATCACTTTTTGAA+GGG | - | chr1_1:16969292-16969311 | Msa0011240:intron | 25.0% |
| !!! | AGTTTGTTTTTGAGAGTTAT+AGG | - | chr1_1:16969354-16969373 | Msa0011240:intron | 25.0% |
| ! | AATAAGTCAATTCATTCAGA+CGG | - | chr1_1:16969592-16969611 | Msa0011240:intron | 25.0% |
| !!! | ATTTTTTGCATTTATGCATG+TGG | - | chr1_1:16969642-16969661 | Msa0011240:intron | 25.0% |
| ! | TGTTAAATAGTTCCATGATA+TGG | - | chr1_1:16970077-16970096 | Msa0011240:intron | 25.0% |
| ! | TTGTACTAAATACCATATCA+TGG | + | chr1_1:16970092-16970111 | None:intergenic | 25.0% |
| !!! | TGAACAAATTGTTATTTTCG+TGG | - | chr1_1:16970169-16970188 | Msa0011240:intron | 25.0% |
| ! | TACTATGGTTTGAATACTTT+AGG | + | chr1_1:16970673-16970692 | None:intergenic | 25.0% |
| ! | TCTTTCATGATTTGACAAAT+AGG | - | chr1_1:16970942-16970961 | Msa0011240:intron | 25.0% |
| ! | AGTATAATAATTGAATGCAC+AGG | + | chr1_1:16971047-16971066 | None:intergenic | 25.0% |
| ! | AAGTTTGATAGAAAAACAGT+TGG | - | chr1_1:16971291-16971310 | Msa0011240:CDS | 25.0% |
| !! | TTTTCTGATAGAATAACCTA+AGG | - | chr1_1:16972342-16972361 | Msa0011240:intron | 25.0% |
| ! | TTTCTGATAGAATAACCTAA+GGG | - | chr1_1:16972343-16972362 | Msa0011240:intron | 25.0% |
| ! | AAGTTTATTAAAATGATCCG+TGG | - | chr1_1:16972502-16972521 | Msa0011240:CDS | 25.0% |
| ! | ATATTTGAATCAACAACAAC+TGG | + | chr1_1:16972652-16972671 | None:intergenic | 25.0% |
| ! | TGATTCAAATATCAACTTAC+AGG | - | chr1_1:16972660-16972679 | Msa0011240:intron | 25.0% |
| ! | GTATTTAACGAGTATTATTC+TGG | - | chr1_1:16972722-16972741 | Msa0011240:intron | 25.0% |
| ! | AGTAAATTTAAGTCTTAGTG+AGG | + | chr1_1:16972872-16972891 | None:intergenic | 25.0% |
| ! | TACTTGAACTTAAAATTGCA+AGG | - | chr1_1:16972888-16972907 | Msa0011240:CDS | 25.0% |
| ! | GAAAAACTTATTACCAACTT+AGG | + | chr1_1:16973009-16973028 | None:intergenic | 25.0% |
| !! | ACTGAATTAGAGCAATTTTA+TGG | - | chr1_1:16973114-16973133 | Msa0011240:intron | 25.0% |
| !!! | ACTTTGTTTTCTTAAATTCC+AGG | - | chr1_1:16973355-16973374 | Msa0011240:intron | 25.0% |
| !!! | AAATTCCACCTTTTGTTATA+AGG | - | chr1_1:16973590-16973609 | Msa0011240:intron | 25.0% |
| ! | TGTAGTTTCCTTATAACAAA+AGG | + | chr1_1:16973601-16973620 | None:intergenic | 25.0% |
| !!! | CAAGATATTTTAATCCAACT+AGG | - | chr1_1:16973619-16973638 | Msa0011240:CDS | 25.0% |
| !! | CATTTTATCTATTTCCTAGT+TGG | + | chr1_1:16973636-16973655 | None:intergenic | 25.0% |
| ! | CATATAAAAATGACATTCAC+AGG | + | chr1_1:16973952-16973971 | None:intergenic | 25.0% |
| ! | CAAAAATTGTATTGTTATGG+AGG | - | chr1_1:16974085-16974104 | Msa0011240:intron | 25.0% |
| ! | TTTATATATACTCTCACAGA+AGG | - | chr1_1:16974894-16974913 | Msa0011240:intron | 25.0% |
| !! | TATCTTAGCATTCTTTAAAG+TGG | - | chr1_1:16975464-16975483 | Msa0011240:intron | 25.0% |
| !!! | ATCTTAGCATTCTTTAAAGT+GGG | - | chr1_1:16975465-16975484 | Msa0011240:intron | 25.0% |
| ! | CTACATATTCTAATAGAGAA+TGG | - | chr1_1:16975662-16975681 | Msa0011240:intron | 25.0% |
| !!! | GTCAATTTTTAGTATAGAGA+AGG | + | chr1_1:16975901-16975920 | None:intergenic | 25.0% |
| ! | AAATAATACATTATGGGGAA+GGG | + | chr1_1:16976403-16976422 | None:intergenic | 25.0% |
| ! | TAAATATGTTACTATGAACC+AGG | + | chr1_1:16976641-16976660 | None:intergenic | 25.0% |
| AATGAACTGAGACAAACATT+TGG | - | chr1_1:16968685-16968704 | Msa0011240:three_prime_UTR | 30.0% | |
| ! | TTTATGGGTCCAGATTTTAT+TGG | - | chr1_1:16969057-16969076 | Msa0011240:intron | 30.0% |
| ! | TTATGGGTCCAGATTTTATT+GGG | - | chr1_1:16969058-16969077 | Msa0011240:intron | 30.0% |
| ! | TTTTTACCCCCAATAAAATC+TGG | + | chr1_1:16969069-16969088 | None:intergenic | 30.0% |
| !!! | GATCTACTATCACTTTTTGA+AGG | - | chr1_1:16969291-16969310 | Msa0011240:intron | 30.0% |
| !!! | TCTACTATCACTTTTTGAAG+GGG | - | chr1_1:16969293-16969312 | Msa0011240:intron | 30.0% |
| !! | GTAATATTCATAAGTTGGTC+TGG | + | chr1_1:16969527-16969546 | None:intergenic | 30.0% |
| TAAATGCAAAAAATCCCAAC+AGG | + | chr1_1:16969636-16969655 | None:intergenic | 30.0% | |
| AGACGATCCAAAATTAAGTT+TGG | - | chr1_1:16969688-16969707 | Msa0011240:intron | 30.0% | |
| ATATTCCAAATGTGTGAAAG+TGG | - | chr1_1:16969784-16969803 | Msa0011240:intron | 30.0% | |
| TATTCCAAATGTGTGAAAGT+GGG | - | chr1_1:16969785-16969804 | Msa0011240:intron | 30.0% | |
| CAGTCTATTTATCTGTTATG+AGG | - | chr1_1:16969907-16969926 | Msa0011240:intron | 30.0% | |
| GCTATTTAACAACACAATGT+TGG | + | chr1_1:16969989-16970008 | None:intergenic | 30.0% | |
| ATAGCAACACTTTAGATGTT+CGG | - | chr1_1:16970013-16970032 | Msa0011240:intron | 30.0% | |
| !!! | CAAATTGTTATTTTCGTGGT+CGG | - | chr1_1:16970173-16970192 | Msa0011240:intron | 30.0% |
| GTCTTGAATTATCTACACTA+TGG | - | chr1_1:16970581-16970600 | Msa0011240:CDS | 30.0% | |
| ATAAGAAGAGAGTTATTGCA+CGG | + | chr1_1:16970634-16970653 | None:intergenic | 30.0% | |
| ATGATTAGATGCTTATGAGT+GGG | + | chr1_1:16970721-16970740 | None:intergenic | 30.0% | |
| TATGATTAGATGCTTATGAG+TGG | + | chr1_1:16970722-16970741 | None:intergenic | 30.0% | |
| ATCTTCATCATACTACTGTT+GGG | + | chr1_1:16970746-16970765 | None:intergenic | 30.0% | |
| AATCTTCATCATACTACTGT+TGG | + | chr1_1:16970747-16970766 | None:intergenic | 30.0% | |
| AAGTGTAACAACACATATTG+TGG | + | chr1_1:16970785-16970804 | None:intergenic | 30.0% | |
| ACACAAATTCAAAAAACCAG+AGG | + | chr1_1:16970843-16970862 | None:intergenic | 30.0% | |
| !!! | TCAAGAGTTATTTTTACCCT+TGG | - | chr1_1:16971111-16971130 | Msa0011240:intron | 30.0% |
| CAAAAGAAACTTGAGTGTTA+AGG | + | chr1_1:16971143-16971162 | None:intergenic | 30.0% | |
| !!! | ATGTTTTGACCTGCATTAAA+GGG | + | chr1_1:16971660-16971679 | None:intergenic | 30.0% |
| TACTGAATGTTGCAAAATAG+CGG | + | chr1_1:16971910-16971929 | None:intergenic | 30.0% | |
| TATAGATTGAGGAAAGAACT+TGG | + | chr1_1:16972023-16972042 | None:intergenic | 30.0% | |
| AATATCGTCAGTATAGATTG+AGG | + | chr1_1:16972034-16972053 | None:intergenic | 30.0% | |
| TTATCACTTGATCCAGTAAT+TGG | - | chr1_1:16972082-16972101 | Msa0011240:intron | 30.0% | |
| TATCACTTGATCCAGTAATT+GGG | - | chr1_1:16972083-16972102 | Msa0011240:intron | 30.0% | |
| AAAACTGTTAGGAGAATACA+TGG | - | chr1_1:16972177-16972196 | Msa0011240:CDS | 30.0% | |
| TCATCTATAAGAGTTGTTGA+GGG | - | chr1_1:16972205-16972224 | Msa0011240:CDS | 30.0% | |
| TGTATTACTGCAACAAAAGT+GGG | - | chr1_1:16972246-16972265 | Msa0011240:intron | 30.0% | |
| AACCATAAAAGAAAACCAGA+GGG | + | chr1_1:16972306-16972325 | None:intergenic | 30.0% | |
| AAACCATAAAAGAAAACCAG+AGG | + | chr1_1:16972307-16972326 | None:intergenic | 30.0% | |
| ATGAATGAATGATTACCCTT+AGG | + | chr1_1:16972361-16972380 | None:intergenic | 30.0% | |
| TGAGTAAATGATATGATCCA+CGG | + | chr1_1:16972522-16972541 | None:intergenic | 30.0% | |
| !!! | ATTGTTGGTTTTTTAGGCAA+TGG | - | chr1_1:16972550-16972569 | Msa0011240:CDS | 30.0% |
| AAAGACTGAAAGAGAGATTA+AGG | + | chr1_1:16972701-16972720 | None:intergenic | 30.0% | |
| TTGAACTTAAAATTGCAAGG+TGG | - | chr1_1:16972891-16972910 | Msa0011240:CDS | 30.0% | |
| !!! | CTTTTTTGGAGGTTTTTCAT+TGG | - | chr1_1:16973288-16973307 | Msa0011240:intron | 30.0% |
| ! | TTGTTTTCTTAAATTCCAGG+AGG | - | chr1_1:16973358-16973377 | Msa0011240:intron | 30.0% |
| ATAATGAGCGAAGAGATATT+TGG | - | chr1_1:16973423-16973442 | Msa0011240:CDS | 30.0% | |
| AGTTTCCTTATAACAAAAGG+TGG | + | chr1_1:16973598-16973617 | None:intergenic | 30.0% | |
| ! | AGCTTTGATGTGATAAATTC+AGG | - | chr1_1:16973765-16973784 | Msa0011240:intron | 30.0% |
| GTAAATATATATGCAGCAAG+AGG | + | chr1_1:16973798-16973817 | None:intergenic | 30.0% | |
| TAAACTAAGAGATTCAAGGA+TGG | + | chr1_1:16973923-16973942 | None:intergenic | 30.0% | |
| CACATAAACTAAGAGATTCA+AGG | + | chr1_1:16973927-16973946 | None:intergenic | 30.0% | |
| TGTAAATAGAAGTTCAGTGA+AGG | - | chr1_1:16973970-16973989 | Msa0011240:intron | 30.0% | |
| AACCAACTTAAAAGCTGATT+TGG | + | chr1_1:16974002-16974021 | None:intergenic | 30.0% | |
| AAGTATAACTTACTACAGTG+AGG | - | chr1_1:16974144-16974163 | Msa0011240:intron | 30.0% | |
| ! | GTGTCTTCAATCTGAAATAT+CGG | + | chr1_1:16974316-16974335 | None:intergenic | 30.0% |
| !!! | TCATATGTGCTTTTTTCACT+TGG | - | chr1_1:16974440-16974459 | Msa0011240:intron | 30.0% |
| ! | CATCAAATGAGAATTTTCCA+TGG | + | chr1_1:16974527-16974546 | None:intergenic | 30.0% |
| !!! | GATAAAGAACTGCTTTTTTG+TGG | + | chr1_1:16974557-16974576 | None:intergenic | 30.0% |
| !!! | GTTCTTTATCGCAGTTTTTT+TGG | - | chr1_1:16974567-16974586 | Msa0011240:intron | 30.0% |
| !!! | TTTTTGGTGATGCTTCTATT+AGG | - | chr1_1:16974583-16974602 | Msa0011240:intron | 30.0% |
| CATCAATCTCATCTTTGTAT+TGG | + | chr1_1:16974622-16974641 | None:intergenic | 30.0% | |
| TACAAAGATGAGATTGATGA+AGG | - | chr1_1:16974623-16974642 | Msa0011240:intron | 30.0% | |
| ATTCCAAGACAAAGAATTCT+AGG | + | chr1_1:16974700-16974719 | None:intergenic | 30.0% | |
| CATTTGGCAAGTATTTATTC+AGG | - | chr1_1:16974734-16974753 | Msa0011240:intron | 30.0% | |
| CTAACATCAATTGGACAAAA+AGG | + | chr1_1:16974847-16974866 | None:intergenic | 30.0% | |
| ! | TTTTGTCCAATTGATGTTAG+TGG | - | chr1_1:16974847-16974866 | Msa0011240:intron | 30.0% |
| ATGTTGTACACAATGTAAAG+AGG | + | chr1_1:16974994-16975013 | None:intergenic | 30.0% | |
| AAATATCGACGAGGTTAAAT+AGG | + | chr1_1:16975164-16975183 | None:intergenic | 30.0% | |
| ATAGTAGTTAAATATCGACG+AGG | + | chr1_1:16975173-16975192 | None:intergenic | 30.0% | |
| !!! | GGTTTAGTTTTTAACATGAG+TGG | + | chr1_1:16975274-16975293 | None:intergenic | 30.0% |
| !! | ATGTAGGAAGTGTTTAAGTT+GGG | + | chr1_1:16975297-16975316 | None:intergenic | 30.0% |
| ATTTACCAAAATAACCCCAT+CGG | + | chr1_1:16975436-16975455 | None:intergenic | 30.0% | |
| AGTATCTCTTCATGTTGTAA+GGG | - | chr1_1:16975508-16975527 | Msa0011240:intron | 30.0% | |
| !!! | TGTTTTTTCTTTGGAATGGA+TGG | + | chr1_1:16975619-16975638 | None:intergenic | 30.0% |
| ATCCATTCCAAAGAAAAAAC+AGG | - | chr1_1:16975618-16975637 | Msa0011240:intron | 30.0% | |
| !!! | ATCCTGTTTTTTCTTTGGAA+TGG | + | chr1_1:16975623-16975642 | None:intergenic | 30.0% |
| !!! | TCATCATCCTGTTTTTTCTT+TGG | + | chr1_1:16975628-16975647 | None:intergenic | 30.0% |
| CATATTCTAATAGAGAATGG+AGG | - | chr1_1:16975665-16975684 | Msa0011240:intron | 30.0% | |
| ! | ATACATCCCTAAAAAGGTAT+GGG | + | chr1_1:16975746-16975765 | None:intergenic | 30.0% |
| AATACATCCCTAAAAAGGTA+TGG | + | chr1_1:16975747-16975766 | None:intergenic | 30.0% | |
| CCTATAATACATCCCTAAAA+AGG | + | chr1_1:16975752-16975771 | None:intergenic | 30.0% | |
| !! | CCTTTTTAGGGATGTATTAT+AGG | - | chr1_1:16975749-16975768 | Msa0011240:intron | 30.0% |
| !! | TTTTAGGGATGTATTATAGG+TGG | - | chr1_1:16975752-16975771 | Msa0011240:intron | 30.0% |
| CTGATAACATCACATAGAAA+AGG | - | chr1_1:16975805-16975824 | Msa0011240:intron | 30.0% | |
| GTACATCTAAATTGACACTT+AGG | + | chr1_1:16976025-16976044 | None:intergenic | 30.0% | |
| CTATCTCTATCCTTGTATAA+TGG | - | chr1_1:16976170-16976189 | Msa0011240:intron | 30.0% | |
| !! | TAAAAGGTGTGCTATTTCTA+TGG | - | chr1_1:16976302-16976321 | Msa0011240:intron | 30.0% |
| ACAGAGTTAGGAATTATTTC+TGG | - | chr1_1:16976333-16976352 | Msa0011240:CDS | 30.0% | |
| !! | TTAGGAATTATTTCTGGACA+AGG | - | chr1_1:16976339-16976358 | Msa0011240:CDS | 30.0% |
| GAAATAATACATTATGGGGA+AGG | + | chr1_1:16976404-16976423 | None:intergenic | 30.0% | |
| TGTATTATTTCAACACACGT+AGG | - | chr1_1:16976413-16976432 | Msa0011240:CDS | 30.0% | |
| AAAGAAGAGGACAAAGTGTA+GGG | + | chr1_1:16968509-16968528 | None:intergenic | 35.0% | |
| TGTGTTTGAAGAGAAAGAAG+AGG | + | chr1_1:16968522-16968541 | None:intergenic | 35.0% | |
| ATTGGTTGAGTTCGTAGAAA+TGG | + | chr1_1:16968567-16968586 | None:intergenic | 35.0% | |
| ATAAATCAAGAAACAGCGAG+AGG | + | chr1_1:16968604-16968623 | None:intergenic | 35.0% | |
| GAATATGTTCGACAATGAAG+CGG | - | chr1_1:16968648-16968667 | Msa0011240:three_prime_UTR | 35.0% | |
| AATATGTTCGACAATGAAGC+GGG | - | chr1_1:16968649-16968668 | Msa0011240:three_prime_UTR | 35.0% | |
| GAAAAACACGAAGTTATGAC+TGG | - | chr1_1:16968713-16968732 | Msa0011240:intron | 35.0% | |
| AGATAATAACCGAACCTCAT+AGG | + | chr1_1:16968845-16968864 | None:intergenic | 35.0% | |
| CGATGAAGATATTGTTAGGT+CGG | + | chr1_1:16968955-16968974 | None:intergenic | 35.0% | |
| ! | TATGGGTCCAGATTTTATTG+GGG | - | chr1_1:16969059-16969078 | Msa0011240:intron | 35.0% |
| !! | AATTGATGAGAGTGCTTGAT+TGG | - | chr1_1:16969097-16969116 | Msa0011240:intron | 35.0% |
| !! | ATTGATGAGAGTGCTTGATT+GGG | - | chr1_1:16969098-16969117 | Msa0011240:intron | 35.0% |
| ! | ACATTCACTCAGATTTTCCT+AGG | + | chr1_1:16969166-16969185 | None:intergenic | 35.0% |
| !!! | AGTGTGGGTTTTTTATGGTT+TGG | - | chr1_1:16969255-16969274 | Msa0011240:intron | 35.0% |
| ACCAATCTTCTACTTATAGG+TGG | - | chr1_1:16969316-16969335 | Msa0011240:intron | 35.0% | |
| ACCACCTATAAGTAGAAGAT+TGG | + | chr1_1:16969320-16969339 | None:intergenic | 35.0% | |
| AATCTTCTACTTATAGGTGG+TGG | - | chr1_1:16969319-16969338 | Msa0011240:intron | 35.0% | |
| GATTCATATTCCTTCCTGTT+GGG | - | chr1_1:16969619-16969638 | Msa0011240:intron | 35.0% | |
| ! | TCACACATTTGGAATATCAG+TGG | + | chr1_1:16969781-16969800 | None:intergenic | 35.0% |
| ATTCCAAATGTGTGAAAGTG+GGG | - | chr1_1:16969786-16969805 | Msa0011240:intron | 35.0% | |
| ATTCAGATACCTAGTAGTTG+TGG | + | chr1_1:16969815-16969834 | None:intergenic | 35.0% | |
| ! | TTTTATAGTAGTGCACGTGA+GGG | - | chr1_1:16970246-16970265 | Msa0011240:intron | 35.0% |
| AAAGACGTGCACTACTAAAA+GGG | + | chr1_1:16970441-16970460 | None:intergenic | 35.0% | |
| GGTATATGCTATTAAGTGTG+TGG | - | chr1_1:16970876-16970895 | Msa0011240:intron | 35.0% | |
| ATATGCTATTAAGTGTGTGG+TGG | - | chr1_1:16970879-16970898 | Msa0011240:intron | 35.0% | |
| TCATCTGGAAAGGAAAATGT+AGG | + | chr1_1:16970906-16970925 | None:intergenic | 35.0% | |
| !!! | AGTTATTTTTACCCTTGGAC+AGG | - | chr1_1:16971116-16971135 | Msa0011240:intron | 35.0% |
| ! | TGTTGTTATTGTTGTGTGAC+TGG | - | chr1_1:16971314-16971333 | Msa0011240:CDS | 35.0% |
| TGATTTCCTGACTATTGCTT+AGG | - | chr1_1:16971394-16971413 | Msa0011240:CDS | 35.0% | |
| ! | ACTATTGCTTAGGTTGTTGA+AGG | - | chr1_1:16971404-16971423 | Msa0011240:intron | 35.0% |
| ! | CTATTGCTTAGGTTGTTGAA+GGG | - | chr1_1:16971405-16971424 | Msa0011240:intron | 35.0% |
| !!! | TGTTTTGACCTGCATTAAAG+GGG | + | chr1_1:16971659-16971678 | None:intergenic | 35.0% |
| !!! | GATGTTTTGACCTGCATTAA+AGG | + | chr1_1:16971661-16971680 | None:intergenic | 35.0% |
| GATACTATTTCAGCTGAAGA+AGG | + | chr1_1:16971697-16971716 | None:intergenic | 35.0% | |
| GAAATAGTATCTGAACCACT+TGG | - | chr1_1:16971706-16971725 | Msa0011240:CDS | 35.0% | |
| ATCACTTGATCCAGTAATTG+GGG | - | chr1_1:16972084-16972103 | Msa0011240:intron | 35.0% | |
| CTCATCTATAAGAGTTGTTG+AGG | - | chr1_1:16972204-16972223 | Msa0011240:CDS | 35.0% | |
| CTGTATTACTGCAACAAAAG+TGG | - | chr1_1:16972245-16972264 | Msa0011240:intron | 35.0% | |
| ! | TGGGACAAAATTTTCTACAC+AGG | - | chr1_1:16972265-16972284 | Msa0011240:intron | 35.0% |
| ACCATAAAAGAAAACCAGAG+GGG | + | chr1_1:16972305-16972324 | None:intergenic | 35.0% | |
| AGGAGAACTAGTGCAATAAA+TGG | + | chr1_1:16972410-16972429 | None:intergenic | 35.0% | |
| !!! | TTTTTTAGGCAATGGAAGAG+TGG | - | chr1_1:16972558-16972577 | Msa0011240:CDS | 35.0% |
| GTGTACATGTATGATGTATC+TGG | + | chr1_1:16972792-16972811 | None:intergenic | 35.0% | |
| ATGATAGCAAGTACTCTATG+TGG | + | chr1_1:16972834-16972853 | None:intergenic | 35.0% | |
| TGCTATCATTCTAGATACCT+TGG | - | chr1_1:16972845-16972864 | Msa0011240:intron | 35.0% | |
| AAAAGACTATGCTCCTAAGT+TGG | - | chr1_1:16972993-16973012 | Msa0011240:CDS | 35.0% | |
| TTGGATGATGACAAAGTTTC+TGG | - | chr1_1:16973210-16973229 | Msa0011240:intron | 35.0% | |
| !! | GTTTCTGGTAAGATTGTTCA+TGG | - | chr1_1:16973225-16973244 | Msa0011240:intron | 35.0% |
| AACCTCCAAAAAAGAAGACA+GGG | + | chr1_1:16973282-16973301 | None:intergenic | 35.0% | |
| AAACCTCCAAAAAAGAAGAC+AGG | + | chr1_1:16973283-16973302 | None:intergenic | 35.0% | |
| TTTGTTTCCTTTCTCGAAAC+AGG | - | chr1_1:16973725-16973744 | Msa0011240:intron | 35.0% | |
| !! | TTTGTTAAGACTGTTTCTGC+TGG | - | chr1_1:16973843-16973862 | Msa0011240:intron | 35.0% |
| !! | CACCAAATCAGCTTTTAAGT+TGG | - | chr1_1:16973997-16974016 | Msa0011240:intron | 35.0% |
| !! | CTAGAAGTAGCTTTAAAACC+AGG | + | chr1_1:16974035-16974054 | None:intergenic | 35.0% |
| ATCAGTAGAAGCAAATGCAA+GGG | + | chr1_1:16974207-16974226 | None:intergenic | 35.0% | |
| AATCAGTAGAAGCAAATGCA+AGG | + | chr1_1:16974208-16974227 | None:intergenic | 35.0% | |
| !!! | AGTGGCCTTTTTTTCTTCAA+CGG | - | chr1_1:16974257-16974276 | Msa0011240:intron | 35.0% |
| AGCATCCGTTGAAGAAAAAA+AGG | + | chr1_1:16974265-16974284 | None:intergenic | 35.0% | |
| ! | GCAATTCATACTTTGCCTTT+TGG | - | chr1_1:16974471-16974490 | Msa0011240:intron | 35.0% |
| ! | ATTCATACTTTGCCTTTTGG+AGG | - | chr1_1:16974474-16974493 | Msa0011240:intron | 35.0% |
| ! | ATCTTTGTATTGGTGTATGG+TGG | + | chr1_1:16974612-16974631 | None:intergenic | 35.0% |
| ! | CTCATCTTTGTATTGGTGTA+TGG | + | chr1_1:16974615-16974634 | None:intergenic | 35.0% |
| ! | GCTATAATTCGTGCCTTATT+TGG | - | chr1_1:16974669-16974688 | Msa0011240:intron | 35.0% |
| !! | TAATTCGTGCCTTATTTGGA+AGG | - | chr1_1:16974673-16974692 | Msa0011240:intron | 35.0% |
| !! | ATTCTAGGACCTTCCAAATA+AGG | + | chr1_1:16974685-16974704 | None:intergenic | 35.0% |
| TTATTCTCAAGCACAAGTCA+TGG | + | chr1_1:16974806-16974825 | None:intergenic | 35.0% | |
| CTTGTGCTTGAGAATAAAGT+AGG | - | chr1_1:16974809-16974828 | Msa0011240:intron | 35.0% | |
| !!! | GAGTTGAGTTTTGAAAGTGA+GGG | - | chr1_1:16975050-16975069 | Msa0011240:intron | 35.0% |
| !!! | AGTTGAGTTTTGAAAGTGAG+GGG | - | chr1_1:16975051-16975070 | Msa0011240:intron | 35.0% |
| ! | CTACTATCGTTTAGCTTCAT+TGG | - | chr1_1:16975186-16975205 | Msa0011240:intron | 35.0% |
| ! | CATTGGTAGTTAACTATCGT+CGG | - | chr1_1:16975203-16975222 | Msa0011240:intron | 35.0% |
| ! | TAACATGAGTGGTGATGAAA+GGG | + | chr1_1:16975263-16975282 | None:intergenic | 35.0% |
| ! | TTAACATGAGTGGTGATGAA+AGG | + | chr1_1:16975264-16975283 | None:intergenic | 35.0% |
| !! | TGTAGGAAGTGTTTAAGTTG+GGG | + | chr1_1:16975296-16975315 | None:intergenic | 35.0% |
| !! | GATGTAGGAAGTGTTTAAGT+TGG | + | chr1_1:16975298-16975317 | None:intergenic | 35.0% |
| !!! | GGGTTATTTTGGTAAATTCG+TGG | - | chr1_1:16975439-16975458 | Msa0011240:intron | 35.0% |
| CAGTATCTCTTCATGTTGTA+AGG | - | chr1_1:16975507-16975526 | Msa0011240:intron | 35.0% | |
| TGTAAGGGACAAACTATAGA+AGG | - | chr1_1:16975523-16975542 | Msa0011240:intron | 35.0% | |
| ! | TCTTCATCCCATACCTTTTT+AGG | - | chr1_1:16975736-16975755 | Msa0011240:intron | 35.0% |
| ! | CTTCATCCCATACCTTTTTA+GGG | - | chr1_1:16975737-16975756 | Msa0011240:intron | 35.0% |
| TTATAGGTGGTGAGTGAATA+AGG | - | chr1_1:16975765-16975784 | Msa0011240:intron | 35.0% | |
| TATAGGTGGTGAGTGAATAA+GGG | - | chr1_1:16975766-16975785 | Msa0011240:intron | 35.0% | |
| GGCTATTCATAAACCCATTT+GGG | - | chr1_1:16975941-16975960 | Msa0011240:intron | 35.0% | |
| ATCATCAGACAAACCCAAAT+GGG | + | chr1_1:16975957-16975976 | None:intergenic | 35.0% | |
| TATCATCAGACAAACCCAAA+TGG | + | chr1_1:16975958-16975977 | None:intergenic | 35.0% | |
| TGCACAAATTATTAAGGGGT+GGG | + | chr1_1:16976209-16976228 | None:intergenic | 35.0% | |
| TTGCACAAATTATTAAGGGG+TGG | + | chr1_1:16976210-16976229 | None:intergenic | 35.0% | |
| ACTTCTTCATCTACACTTGA+TGG | - | chr1_1:16976271-16976290 | Msa0011240:intron | 35.0% | |
| CTTCTTCATCTACACTTGAT+GGG | - | chr1_1:16976272-16976291 | Msa0011240:intron | 35.0% | |
| TTCTTCATCTACACTTGATG+GGG | - | chr1_1:16976273-16976292 | Msa0011240:intron | 35.0% | |
| CTTGATGGGGTAAAGATAAA+AGG | - | chr1_1:16976286-16976305 | Msa0011240:intron | 35.0% | |
| CTCAAAAAAACAAGAGAGCT+AGG | + | chr1_1:16976475-16976494 | None:intergenic | 35.0% | |
| ! | CAATGTTTGGATCTTGCTTT+TGG | - | chr1_1:16976581-16976600 | Msa0011240:five_prime_UTR | 35.0% |
| TATGAACCAGGCGTTTAAAT+AGG | + | chr1_1:16976629-16976648 | None:intergenic | 35.0% | |
| GAAAGAAGAGGACAAAGTGT+AGG | + | chr1_1:16968510-16968529 | None:intergenic | 40.0% | |
| ! | CTGAGACAAACATTTGGTTC+TGG | - | chr1_1:16968691-16968710 | Msa0011240:three_prime_UTR | 40.0% |
| TATCACATGAACTCAGACGA+AGG | - | chr1_1:16968920-16968939 | Msa0011240:intron | 40.0% | |
| ! | ATGGGTCCAGATTTTATTGG+GGG | - | chr1_1:16969060-16969079 | Msa0011240:intron | 40.0% |
| GTTCTGTTCTGTTGAATCCT+AGG | - | chr1_1:16969146-16969165 | Msa0011240:intron | 40.0% | |
| ! | TTTCTGGTGTGTGTACTGTT+CGG | - | chr1_1:16969217-16969236 | Msa0011240:intron | 40.0% |
| !!! | GTTGCAGTGTGGGTTTTTTA+TGG | - | chr1_1:16969250-16969269 | Msa0011240:intron | 40.0% |
| GGGACCAATCTTCTACTTAT+AGG | - | chr1_1:16969313-16969332 | Msa0011240:intron | 40.0% | |
| AGTCAATTCATTCAGACGGT+TGG | - | chr1_1:16969596-16969615 | Msa0011240:intron | 40.0% | |
| GTCAATTCATTCAGACGGTT+GGG | - | chr1_1:16969597-16969616 | Msa0011240:intron | 40.0% | |
| GGATTCATATTCCTTCCTGT+TGG | - | chr1_1:16969618-16969637 | Msa0011240:intron | 40.0% | |
| TGCAAAAAATCCCAACAGGA+AGG | + | chr1_1:16969632-16969651 | None:intergenic | 40.0% | |
| GCATTTATGCATGTGGAATG+TGG | - | chr1_1:16969649-16969668 | Msa0011240:intron | 40.0% | |
| ATTCCCCACTTTCACACATT+TGG | + | chr1_1:16969792-16969811 | None:intergenic | 40.0% | |
| AGCATCTTAAGTGTCTCAAG+TGG | + | chr1_1:16969933-16969952 | None:intergenic | 40.0% | |
| CTTGAGACACTTAAGATGCT+AGG | - | chr1_1:16969933-16969952 | Msa0011240:intron | 40.0% | |
| CACTTAAGATGCTAGGTCTT+AGG | - | chr1_1:16969940-16969959 | Msa0011240:intron | 40.0% | |
| ACACAATGTTGGATCGTCAA+TGG | + | chr1_1:16969978-16969997 | None:intergenic | 40.0% | |
| CACTTTAGATGTTCGGTCAT+AGG | - | chr1_1:16970020-16970039 | Msa0011240:intron | 40.0% | |
| ! | GTTTTATAGTAGTGCACGTG+AGG | - | chr1_1:16970245-16970264 | Msa0011240:intron | 40.0% |
| TTTATAGTAGTGCACGTGAG+GGG | - | chr1_1:16970247-16970266 | Msa0011240:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr1_1:16970292-16970311 | Msa0011240:intron | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr1_1:16970335-16970354 | Msa0011240:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr1_1:16970336-16970355 | Msa0011240:three_prime_UTR | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr1_1:16970343-16970362 | None:intergenic | 40.0% |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr1_1:16970341-16970360 | Msa0011240:three_prime_UTR | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_1:16970367-16970386 | Msa0011240:three_prime_UTR | 40.0% | |
| GAAAGACGTGCACTACTAAA+AGG | + | chr1_1:16970442-16970461 | None:intergenic | 40.0% | |
| TGCACGGAATAGACTCTATT+TGG | + | chr1_1:16970618-16970637 | None:intergenic | 40.0% | |
| ATTAGATGCTTATGAGTGGG+TGG | + | chr1_1:16970718-16970737 | None:intergenic | 40.0% | |
| GTGCTTCTAATCATCTGGAA+AGG | + | chr1_1:16970916-16970935 | None:intergenic | 40.0% | |
| TGCTTGTGCTTCTAATCATC+TGG | + | chr1_1:16970921-16970940 | None:intergenic | 40.0% | |
| ATCAAAGATCTCCTAACCAG+TGG | + | chr1_1:16971007-16971026 | None:intergenic | 40.0% | |
| ATACTCCAGCAAGTGTGAAT+TGG | - | chr1_1:16971062-16971081 | Msa0011240:intron | 40.0% | |
| AACAACCAATTCACACTTGC+TGG | + | chr1_1:16971070-16971089 | None:intergenic | 40.0% | |
| TGTTATTGTTGTGTGACTGG+AGG | - | chr1_1:16971317-16971336 | Msa0011240:CDS | 40.0% | |
| AGTCTGAGTTGTGTAGTTAG+TGG | - | chr1_1:16971345-16971364 | Msa0011240:CDS | 40.0% | |
| CAACAACCTAAGCAATAGTC+AGG | + | chr1_1:16971403-16971422 | None:intergenic | 40.0% | |
| GGTGTAATTGCATTGCAGAT+TGG | - | chr1_1:16971483-16971502 | Msa0011240:intron | 40.0% | |
| CTCATGTAAAACTGCACTCA+AGG | - | chr1_1:16971518-16971537 | Msa0011240:intron | 40.0% | |
| CACTCAAGGAATTGAAGCAT+TGG | - | chr1_1:16971532-16971551 | Msa0011240:intron | 40.0% | |
| !! | CAAGGAATTGAAGCATTGGA+TGG | - | chr1_1:16971536-16971555 | Msa0011240:intron | 40.0% |
| ! | CACTGAAAACGTACCTTTTC+CGG | + | chr1_1:16971564-16971583 | None:intergenic | 40.0% |
| GACATAGTATCTGAACCACT+TGG | - | chr1_1:16971611-16971630 | Msa0011240:intron | 40.0% | |
| CATGAATTCCCCTTTAATGC+AGG | - | chr1_1:16971648-16971667 | Msa0011240:intron | 40.0% | |
| ATGATCAACACAACTCCAAG+TGG | + | chr1_1:16971724-16971743 | None:intergenic | 40.0% | |
| ! | TTGTGTTGATCATCTCTGCA+TGG | - | chr1_1:16971731-16971750 | Msa0011240:CDS | 40.0% |
| AGCTTGGAGGGAAGAAAAAA+GGG | + | chr1_1:16971805-16971824 | None:intergenic | 40.0% | |
| TAGCTTGGAGGGAAGAAAAA+AGG | + | chr1_1:16971806-16971825 | None:intergenic | 40.0% | |
| ! | ATTGACATCACTAGCTTGGA+GGG | + | chr1_1:16971817-16971836 | None:intergenic | 40.0% |
| ACTGGATCAAGTGATAACAC+TGG | + | chr1_1:16972079-16972098 | None:intergenic | 40.0% | |
| !!! | TCCCCTCTGGTTTTCTTTTA+TGG | - | chr1_1:16972301-16972320 | Msa0011240:intron | 40.0% |
| ! | CAAAGCTCTAATACCAGTTG+AGG | + | chr1_1:16972430-16972449 | None:intergenic | 40.0% |
| ! | CTTTGATCACAGAGTGTTCA+GGG | - | chr1_1:16972445-16972464 | Msa0011240:intron | 40.0% |
| ! | AAGACGACTTCAAGTTTGCT+TGG | - | chr1_1:16972479-16972498 | Msa0011240:intron | 40.0% |
| ! | GTACGTGTATCTTGTCACTT+TGG | - | chr1_1:16972765-16972784 | Msa0011240:intron | 40.0% |
| TTAAGTCTTAGTGAGGTCCA+AGG | + | chr1_1:16972865-16972884 | None:intergenic | 40.0% | |
| AAGGATAATCGCTGGAAAGT+GGG | - | chr1_1:16972921-16972940 | Msa0011240:CDS | 40.0% | |
| TAGAGAATCCACCTAGGAAT+AGG | + | chr1_1:16973091-16973110 | None:intergenic | 40.0% | |
| ! | AGTCTTTAGAGAATCCACCT+AGG | + | chr1_1:16973097-16973116 | None:intergenic | 40.0% |
| ! | CGATCGCTTGATAAAGCTTT+TGG | - | chr1_1:16973191-16973210 | Msa0011240:intron | 40.0% |
| TCTGGTAAGATTGTTCATGG+AGG | - | chr1_1:16973228-16973247 | Msa0011240:intron | 40.0% | |
| GATTGTTCATGGAGGTGAAA+AGG | - | chr1_1:16973236-16973255 | Msa0011240:intron | 40.0% | |
| !!! | AAGCTCCCTGTCTTCTTTTT+TGG | - | chr1_1:16973274-16973293 | Msa0011240:intron | 40.0% |
| ! | GATTAGCCCTACTGTTCTAT+TGG | - | chr1_1:16973380-16973399 | Msa0011240:intron | 40.0% |
| GGACATCCAATAGAACAGTA+GGG | + | chr1_1:16973389-16973408 | None:intergenic | 40.0% | |
| TCATTATCAGAGAATCACGC+GGG | + | chr1_1:16973410-16973429 | None:intergenic | 40.0% | |
| CTCATTATCAGAGAATCACG+CGG | + | chr1_1:16973411-16973430 | None:intergenic | 40.0% | |
| TCCATTACTTCCCATCATCA+CGG | - | chr1_1:16973446-16973465 | Msa0011240:CDS | 40.0% | |
| TTATCGACCTGTTTCGAGAA+AGG | + | chr1_1:16973735-16973754 | None:intergenic | 40.0% | |
| ATATATGCAGCAAGAGGCTT+CGG | + | chr1_1:16973792-16973811 | None:intergenic | 40.0% | |
| TACAAACGACAAGAAGCTCA+AGG | - | chr1_1:16973815-16973834 | Msa0011240:intron | 40.0% | |
| !!! | TAGTGCGTCATAGTTTTGAC+TGG | - | chr1_1:16974399-16974418 | Msa0011240:intron | 40.0% |
| AGATTGATGAAGGCTCTCAT+GGG | - | chr1_1:16974633-16974652 | Msa0011240:intron | 40.0% | |
| GGTCCTAGAATTCTTTGTCT+TGG | - | chr1_1:16974694-16974713 | Msa0011240:intron | 40.0% | |
| GCATGACCACTAACATCAAT+TGG | + | chr1_1:16974856-16974875 | None:intergenic | 40.0% | |
| GTACAATTTGAGCATGCTAG+CGG | - | chr1_1:16974964-16974983 | Msa0011240:intron | 40.0% | |
| CAAAACTCAACTCGCAAACA+AGG | + | chr1_1:16975043-16975062 | None:intergenic | 40.0% | |
| !!! | CGAGTTGAGTTTTGAAAGTG+AGG | - | chr1_1:16975049-16975068 | Msa0011240:intron | 40.0% |
| !!! | AGTTTTGAAAGTGAGGGGTT+TGG | - | chr1_1:16975056-16975075 | Msa0011240:intron | 40.0% |
| !!! | GTTTTGAAAGTGAGGGGTTT+GGG | - | chr1_1:16975057-16975076 | Msa0011240:intron | 40.0% |
| !! | TTAACTATCGTCGGTTCCAT+CGG | - | chr1_1:16975212-16975231 | Msa0011240:intron | 40.0% |
| !! | GTAGGAAGTGTTTAAGTTGG+GGG | + | chr1_1:16975295-16975314 | None:intergenic | 40.0% |
| ACTGCCGTTAAATTAGAAGC+CGG | - | chr1_1:16975366-16975385 | Msa0011240:intron | 40.0% | |
| !! | ACTGCCGGCTTCTAATTTAA+CGG | + | chr1_1:16975373-16975392 | None:intergenic | 40.0% |
| ! | AACTACCGATGGGGTTATTT+TGG | - | chr1_1:16975428-16975447 | Msa0011240:intron | 40.0% |
| ACCATCAGGCTCATGAATTT+GGG | + | chr1_1:16975578-16975597 | None:intergenic | 40.0% | |
| AACCATCAGGCTCATGAATT+TGG | + | chr1_1:16975579-16975598 | None:intergenic | 40.0% | |
| GGGCTATTCATAAACCCATT+TGG | - | chr1_1:16975940-16975959 | Msa0011240:intron | 40.0% | |
| TTGAGGAAGAACACACTTCA+AGG | + | chr1_1:16975992-16976011 | None:intergenic | 40.0% | |
| ACTTAGGAGAATCGAACTTG+AGG | + | chr1_1:16976009-16976028 | None:intergenic | 40.0% | |
| GAAGAGCAGACCATTATACA+AGG | + | chr1_1:16976183-16976202 | None:intergenic | 40.0% | |
| ATGGTACAGACTACAGAGTT+AGG | - | chr1_1:16976321-16976340 | Msa0011240:CDS | 40.0% | |
| AATCAAGTCTCTGTCACGAT+TGG | - | chr1_1:16976442-16976461 | Msa0011240:CDS | 40.0% | |
| AGGCGTTTAAATAGGCTATG+GGG | + | chr1_1:16976621-16976640 | None:intergenic | 40.0% | |
| CAGGCGTTTAAATAGGCTAT+GGG | + | chr1_1:16976622-16976641 | None:intergenic | 40.0% | |
| AAGAGGACAAAGTGTAGGGT+GGG | + | chr1_1:16968505-16968524 | None:intergenic | 45.0% | |
| GGTTGAGTTCGTAGAAATGG+AGG | + | chr1_1:16968564-16968583 | None:intergenic | 45.0% | |
| TCTCAGTTCATTCACCAGCA+TGG | + | chr1_1:16968677-16968696 | None:intergenic | 45.0% | |
| ATAGGCGACAGTTTCAAGAG+GGG | + | chr1_1:16968827-16968846 | None:intergenic | 45.0% | |
| CATAGGCGACAGTTTCAAGA+GGG | + | chr1_1:16968828-16968847 | None:intergenic | 45.0% | |
| TCATAGGCGACAGTTTCAAG+AGG | + | chr1_1:16968829-16968848 | None:intergenic | 45.0% | |
| TCTTGAAACTGTCGCCTATG+AGG | - | chr1_1:16968828-16968847 | Msa0011240:intron | 45.0% | |
| AAACTGTCGCCTATGAGGTT+CGG | - | chr1_1:16968833-16968852 | Msa0011240:intron | 45.0% | |
| ATGAACTCAGACGAAGGTGA+AGG | - | chr1_1:16968926-16968945 | Msa0011240:intron | 45.0% | |
| ACCGTTCAATCTTGACCAAG+TGG | - | chr1_1:16969755-16969774 | Msa0011240:intron | 45.0% | |
| GCCACTTGGTCAAGATTGAA+CGG | + | chr1_1:16969759-16969778 | None:intergenic | 45.0% | |
| TTGGAATATCAGTGGCCACT+TGG | + | chr1_1:16969773-16969792 | None:intergenic | 45.0% | |
| TGCTAGGTCTTAGGTGTTAG+AGG | - | chr1_1:16969949-16969968 | Msa0011240:intron | 45.0% | |
| CAACTTTACCAATTGCGCCA+AGG | + | chr1_1:16970276-16970295 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr1_1:16970298-16970317 | Msa0011240:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr1_1:16970299-16970318 | Msa0011240:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_1:16970332-16970351 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_1:16970363-16970382 | Msa0011240:three_prime_UTR | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_1:16970366-16970385 | Msa0011240:three_prime_UTR | 45.0% | |
| GAATGAGAATGAGATGCCAC+TGG | - | chr1_1:16970988-16971007 | Msa0011240:intron | 45.0% | |
| ! | AGAATGAGATGCCACTGGTT+AGG | - | chr1_1:16970993-16971012 | Msa0011240:intron | 45.0% |
| !! | CTTTGATGATGTGCAACCAG+TGG | - | chr1_1:16971020-16971039 | Msa0011240:intron | 45.0% |
| AATTGAATGCACAGGACCAC+TGG | + | chr1_1:16971039-16971058 | None:intergenic | 45.0% | |
| AGTGTTAAGGTCCTGTCCAA+GGG | + | chr1_1:16971130-16971149 | None:intergenic | 45.0% | |
| ! | GCTTAGGTTGTTGAAGGGTT+TGG | - | chr1_1:16971410-16971429 | Msa0011240:intron | 45.0% |
| !! | ATTGAAGCATTGGATGGCTC+CGG | - | chr1_1:16971542-16971561 | Msa0011240:intron | 45.0% |
| GTGATCAACACAACTCCAAG+TGG | + | chr1_1:16971629-16971648 | None:intergenic | 45.0% | |
| ! | GATTGACATCACTAGCTTGG+AGG | + | chr1_1:16971818-16971837 | None:intergenic | 45.0% |
| TGCGATTGACATCACTAGCT+TGG | + | chr1_1:16971821-16971840 | None:intergenic | 45.0% | |
| CAGTTATAGCAGCTCTATCG+CGG | + | chr1_1:16971982-16972001 | None:intergenic | 45.0% | |
| ! | TATTGCAGCTGGTAATGCTG+TGG | - | chr1_1:16972108-16972127 | Msa0011240:intron | 45.0% |
| GTGGCTGGAGAAATTTCTGA+TGG | + | chr1_1:16972142-16972161 | None:intergenic | 45.0% | |
| ! | TTTTGCCAGCAACGATGATG+TGG | + | chr1_1:16972161-16972180 | None:intergenic | 45.0% |
| TCGTTGCTGGCAAAACTGTT+AGG | - | chr1_1:16972166-16972185 | Msa0011240:CDS | 45.0% | |
| ! | TTCTCTTTGTTTCTCCCCTC+TGG | - | chr1_1:16972288-16972307 | Msa0011240:intron | 45.0% |
| ! | TTGCACTAGTTCTCCTCAAC+TGG | - | chr1_1:16972414-16972433 | Msa0011240:intron | 45.0% |
| ! | GCTTTGATCACAGAGTGTTC+AGG | - | chr1_1:16972444-16972463 | Msa0011240:intron | 45.0% |
| AAGAGTGGCACGCATTGTTA+TGG | - | chr1_1:16972573-16972592 | Msa0011240:CDS | 45.0% | |
| ATTGCAAGGTGGCAACTAGA+AGG | - | chr1_1:16972902-16972921 | Msa0011240:CDS | 45.0% | |
| GCAACTAGAAGGATAATCGC+TGG | - | chr1_1:16972913-16972932 | Msa0011240:CDS | 45.0% | |
| GAAGGATAATCGCTGGAAAG+TGG | - | chr1_1:16972920-16972939 | Msa0011240:CDS | 45.0% | |
| AGGATAATCGCTGGAAAGTG+GGG | - | chr1_1:16972922-16972941 | Msa0011240:CDS | 45.0% | |
| ! | GTTTGGTTCCTCCTATTCCT+AGG | - | chr1_1:16973077-16973096 | Msa0011240:intron | 45.0% |
| AGAATCCACCTAGGAATAGG+AGG | + | chr1_1:16973088-16973107 | None:intergenic | 45.0% | |
| GCTTTATCAAGCGATCGAAG+TGG | + | chr1_1:16973188-16973207 | None:intergenic | 45.0% | |
| !!! | CTCCCTGTCTTCTTTTTTGG+AGG | - | chr1_1:16973277-16973296 | Msa0011240:intron | 45.0% |
| GGGACATCCAATAGAACAGT+AGG | + | chr1_1:16973390-16973409 | None:intergenic | 45.0% | |
| !! | ACCGTGATGATGGGAAGTAA+TGG | + | chr1_1:16973450-16973469 | None:intergenic | 45.0% |
| !! | GTTAAGACTGTTTCTGCTGG+TGG | - | chr1_1:16973846-16973865 | Msa0011240:intron | 45.0% |
| ! | AGTTGGTTCTCAGCAATTCC+TGG | - | chr1_1:16974014-16974033 | Msa0011240:intron | 45.0% |
| GATTGATGCAACTGTCGTGT+TGG | + | chr1_1:16974338-16974357 | None:intergenic | 45.0% | |
| !! | ACTTTGCCTTTTGGAGGAGT+AGG | - | chr1_1:16974480-16974499 | Msa0011240:intron | 45.0% |
| GAGATTGATGAAGGCTCTCA+TGG | - | chr1_1:16974632-16974651 | Msa0011240:intron | 45.0% | |
| AATTTGAGCATGCTAGCGGA+GGG | - | chr1_1:16974968-16974987 | Msa0011240:intron | 45.0% | |
| GTTCCATCGGTAGTCAACAA+TGG | - | chr1_1:16975225-16975244 | Msa0011240:intron | 45.0% | |
| ! | GAACCATTGTTGACTACCGA+TGG | + | chr1_1:16975231-16975250 | None:intergenic | 45.0% |
| ! | ATGAGTGGTGATGAAAGGGA+TGG | + | chr1_1:16975259-16975278 | None:intergenic | 45.0% |
| GTTAAATTAGAAGCCGGCAG+TGG | - | chr1_1:16975372-16975391 | Msa0011240:intron | 45.0% | |
| ACCCAAATTCATGAGCCTGA+TGG | - | chr1_1:16975574-16975593 | Msa0011240:intron | 45.0% | |
| AACCTCACAGTCTAACCATC+AGG | + | chr1_1:16975592-16975611 | None:intergenic | 45.0% | |
| GGAGGACATGTGTGACTATT+AGG | - | chr1_1:16975683-16975702 | Msa0011240:intron | 45.0% | |
| ! | CGTGACAGAGACTTGATTTG+TGG | + | chr1_1:16976440-16976459 | None:intergenic | 45.0% |
| AGCCATTGTGTTAGTGCTCT+TGG | - | chr1_1:16976493-16976512 | Msa0011240:CDS | 45.0% | |
| !! | AGCCAAGAGCACTAACACAA+TGG | + | chr1_1:16976498-16976517 | None:intergenic | 45.0% |
| TGTGTTAGTGCTCTTGGCTA+AGG | - | chr1_1:16976499-16976518 | Msa0011240:CDS | 45.0% | |
| CCAGGCGTTTAAATAGGCTA+TGG | + | chr1_1:16976623-16976642 | None:intergenic | 45.0% | |
| CCATAGCCTATTTAAACGCC+TGG | - | chr1_1:16976620-16976639 | Msa0011240:five_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTAATTTTTC+TGG | - | chr1_1:16969201-16969220 | Msa0011240:intron | 5.0% |
| GAAGAGGACAAAGTGTAGGG+TGG | + | chr1_1:16968506-16968525 | None:intergenic | 50.0% | |
| TAGGCGACAGTTTCAAGAGG+GGG | + | chr1_1:16968826-16968845 | None:intergenic | 50.0% | |
| TGGTGTGTGTACTGTTCGGT+GGG | - | chr1_1:16969221-16969240 | Msa0011240:intron | 50.0% | |
| GTGGGGAATCCACAACTACT+AGG | - | chr1_1:16969803-16969822 | Msa0011240:intron | 50.0% | |
| TGTTCGGTCATAGGTCTGAG+AGG | - | chr1_1:16970029-16970048 | Msa0011240:intron | 50.0% | |
| GCACTACTAAAAGGGCAACC+CGG | + | chr1_1:16970433-16970452 | None:intergenic | 50.0% | |
| GCAGTGACCCTCGTACTTAA+TGG | - | chr1_1:16970817-16970836 | Msa0011240:intron | 50.0% | |
| CCAGAGGCCATTAAGTACGA+GGG | + | chr1_1:16970827-16970846 | None:intergenic | 50.0% | |
| ACCAGAGGCCATTAAGTACG+AGG | + | chr1_1:16970828-16970847 | None:intergenic | 50.0% | |
| GAGTGTTAAGGTCCTGTCCA+AGG | + | chr1_1:16971131-16971150 | None:intergenic | 50.0% | |
| GCTGCAATAGCCCCAATTAC+TGG | + | chr1_1:16972097-16972116 | None:intergenic | 50.0% | |
| GTAATTGGGGCTATTGCAGC+TGG | - | chr1_1:16972097-16972116 | Msa0011240:intron | 50.0% | |
| GGAAAGTGGGGTTGCAACAA+TGG | - | chr1_1:16972934-16972953 | Msa0011240:CDS | 50.0% | |
| TGGTTCCTCCTATTCCTAGG+TGG | - | chr1_1:16973080-16973099 | Msa0011240:intron | 50.0% | |
| AACAGTAGGGCTAATCCTCC+TGG | + | chr1_1:16973376-16973395 | None:intergenic | 50.0% | |
| !! | GACTGTTTCTGCTGGTGGTT+TGG | - | chr1_1:16973851-16973870 | Msa0011240:intron | 50.0% |
| CTCTCACCTACTCCTCCAAA+AGG | + | chr1_1:16974489-16974508 | None:intergenic | 50.0% | |
| TTTGGAGGAGTAGGTGAGAG+TGG | - | chr1_1:16974489-16974508 | Msa0011240:intron | 50.0% | |
| TTGATGAAGGCTCTCATGGG+TGG | - | chr1_1:16974636-16974655 | Msa0011240:intron | 50.0% | |
| CAATTTGAGCATGCTAGCGG+AGG | - | chr1_1:16974967-16974986 | Msa0011240:intron | 50.0% | |
| TTAACGGCAGTTAGCTGTCG+TGG | + | chr1_1:16975357-16975376 | None:intergenic | 50.0% | |
| AACTGCCGCTGAAAGTCATC+CGG | - | chr1_1:16975397-16975416 | Msa0011240:intron | 50.0% | |
| CATCGGTAGTTAACTACCGC+CGG | + | chr1_1:16975419-16975438 | None:intergenic | 50.0% | |
| GGCGGTAGTTAACTACCGAT+GGG | - | chr1_1:16975418-16975437 | Msa0011240:intron | 50.0% | |
| GCGGTAGTTAACTACCGATG+GGG | - | chr1_1:16975419-16975438 | Msa0011240:intron | 50.0% | |
| AGCCTGATGGTTAGACTGTG+AGG | - | chr1_1:16975587-16975606 | Msa0011240:intron | 50.0% | |
| ! | TGTGATGAGGGTGGTACTGG+TGG | + | chr1_1:16968482-16968501 | None:intergenic | 55.0% |
| GTGTAGGGTGGGTGTGATGA+GGG | + | chr1_1:16968494-16968513 | None:intergenic | 55.0% | |
| AGTGTAGGGTGGGTGTGATG+AGG | + | chr1_1:16968495-16968514 | None:intergenic | 55.0% | |
| CAATGAAGCGGGATCCATGC+TGG | - | chr1_1:16968660-16968679 | Msa0011240:three_prime_UTR | 55.0% | |
| CTGGTGTGTGTACTGTTCGG+TGG | - | chr1_1:16969220-16969239 | Msa0011240:intron | 55.0% | |
| ! | GGTGTGTGTACTGTTCGGTG+GGG | - | chr1_1:16969222-16969241 | Msa0011240:intron | 55.0% |
| ! | GTGTGTGTACTGTTCGGTGG+GGG | - | chr1_1:16969223-16969242 | Msa0011240:intron | 55.0% |
| TGGGGGAAACGTTGCAGTGT+GGG | - | chr1_1:16969240-16969259 | Msa0011240:intron | 55.0% | |
| AGGGGTAACCTTGGCGCAAT+TGG | - | chr1_1:16970265-16970284 | Msa0011240:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_1:16970311-16970330 | Msa0011240:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr1_1:16970406-16970425 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr1_1:16970407-16970426 | None:intergenic | 55.0% | |
| CCCTCGTACTTAATGGCCTC+TGG | - | chr1_1:16970824-16970843 | Msa0011240:intron | 55.0% | |
| GCATTGGATGGCTCCGGAAA+AGG | - | chr1_1:16971548-16971567 | Msa0011240:intron | 55.0% | |
| TCCAGCCACATCATCGTTGC+TGG | - | chr1_1:16972153-16972172 | Msa0011240:CDS | 55.0% | |
| GCACCTTACACCAGTTGTGC+TGG | - | chr1_1:16972609-16972628 | Msa0011240:intron | 55.0% | |
| GCTCCAGCACAACTGGTGTA+AGG | + | chr1_1:16972615-16972634 | None:intergenic | 55.0% | |
| ACACCAGTTGTGCTGGAGCT+TGG | - | chr1_1:16972616-16972635 | Msa0011240:intron | 55.0% | |
| AGGAGTAGGTGAGAGTGGAG+TGG | - | chr1_1:16974494-16974513 | Msa0011240:intron | 55.0% | |
| GGAGTAGGTGAGAGTGGAGT+GGG | - | chr1_1:16974495-16974514 | Msa0011240:intron | 55.0% | |
| AGTGGAGTGGGTGCATACCA+TGG | - | chr1_1:16974507-16974526 | Msa0011240:intron | 55.0% | |
| ATGAAGGCTCTCATGGGTGG+TGG | - | chr1_1:16974639-16974658 | Msa0011240:intron | 55.0% | |
| TACCGCCGGATGACTTTCAG+CGG | + | chr1_1:16975405-16975424 | None:intergenic | 55.0% | |
| CGGCGGTAGTTAACTACCGA+TGG | - | chr1_1:16975417-16975436 | Msa0011240:intron | 55.0% | |
| GGGTGTGATGAGGGTGGTAC+TGG | + | chr1_1:16968485-16968504 | None:intergenic | 60.0% | |
| TAGGGTGGGTGTGATGAGGG+TGG | + | chr1_1:16968491-16968510 | None:intergenic | 60.0% | |
| GTGGGGGAAACGTTGCAGTG+TGG | - | chr1_1:16969239-16969258 | Msa0011240:intron | 60.0% | |
| GTGCACGTGAGGGGTAACCT+TGG | - | chr1_1:16970256-16970275 | Msa0011240:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_1:16970379-16970398 | Msa0011240:three_prime_UTR | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr1_1:16970394-16970413 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr1_1:16970395-16970414 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr1_1:16970394-16970413 | Msa0011240:three_prime_UTR | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr1_1:16970395-16970414 | Msa0011240:three_prime_UTR | 60.0% | |
| AGCGGCTATAGCAGCGCTCT+AGG | + | chr1_1:16971892-16971911 | None:intergenic | 60.0% | |
| GCCAGCAACGATGATGTGGC+TGG | + | chr1_1:16972157-16972176 | None:intergenic | 60.0% | |
| CCTCCAAGCTCCAGCACAAC+TGG | + | chr1_1:16972622-16972641 | None:intergenic | 60.0% | |
| CCAGTTGTGCTGGAGCTTGG+AGG | - | chr1_1:16972619-16972638 | Msa0011240:intron | 60.0% | |
| CAGCGGCAGTTAACCACTGC+CGG | + | chr1_1:16975388-16975407 | None:intergenic | 60.0% | |
| TGCCGCTGAAAGTCATCCGG+CGG | - | chr1_1:16975400-16975419 | Msa0011240:intron | 60.0% | |
| !! | GAGGGTGGTACTGGTGGTGC+AGG | + | chr1_1:16968476-16968495 | None:intergenic | 65.0% |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_1:16970381-16970400 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr1_1:16970396-16970415 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr1_1:16970400-16970419 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr1_1:16970401-16970420 | None:intergenic | 65.0% | |
| ! | ATGCGGGAGCTCTAGTGCGC+CGG | - | chr1_1:16970411-16970430 | Msa0011240:three_prime_UTR | 65.0% |
| ! | TGCGGGAGCTCTAGTGCGCC+GGG | - | chr1_1:16970412-16970431 | Msa0011240:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 16968473 | 16976689 | 16968473 | ID=Msa0011240;Name=Msa0011240 |
| chr1_1 | mRNA | 16968473 | 16976689 | 16968473 | ID=Msa0011240-mRNA-1;Parent=Msa0011240;Name=Msa0011240-mRNA-1;_AED=0.18;_eAED=0.18;_QI=152|1|1|1|0.9|0.81|11|384|488 |
| chr1_1 | exon | 16968473 | 16968731 | 16968473 | ID=Msa0011240-mRNA-1:exon:6205;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16970336 | 16970694 | 16970336 | ID=Msa0011240-mRNA-1:exon:6204;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16971266 | 16971415 | 16971266 | ID=Msa0011240-mRNA-1:exon:6203;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16971695 | 16971785 | 16971695 | ID=Msa0011240-mRNA-1:exon:6202;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16971891 | 16972063 | 16971891 | ID=Msa0011240-mRNA-1:exon:6201;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16972148 | 16972252 | 16972148 | ID=Msa0011240-mRNA-1:exon:6200;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16972481 | 16972596 | 16972481 | ID=Msa0011240-mRNA-1:exon:6199;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16972876 | 16973082 | 16972876 | ID=Msa0011240-mRNA-1:exon:6198;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16973396 | 16973492 | 16973396 | ID=Msa0011240-mRNA-1:exon:6197;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16973593 | 16973661 | 16973593 | ID=Msa0011240-mRNA-1:exon:6196;Parent=Msa0011240-mRNA-1 |
| chr1_1 | exon | 16976313 | 16976689 | 16976313 | ID=Msa0011240-mRNA-1:exon:6195;Parent=Msa0011240-mRNA-1 |
| chr1_1 | five_prime_UTR | 16976538 | 16976689 | 16976538 | ID=Msa0011240-mRNA-1:five_prime_utr;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16976313 | 16976537 | 16976313 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16973593 | 16973661 | 16973593 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16973396 | 16973492 | 16973396 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16972876 | 16973082 | 16972876 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16972481 | 16972596 | 16972481 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16972148 | 16972252 | 16972148 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16971891 | 16972063 | 16971891 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16971695 | 16971785 | 16971695 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16971266 | 16971415 | 16971266 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | CDS | 16970461 | 16970694 | 16970461 | ID=Msa0011240-mRNA-1:cds;Parent=Msa0011240-mRNA-1 |
| chr1_1 | three_prime_UTR | 16970336 | 16970460 | 16970336 | ID=Msa0011240-mRNA-1:three_prime_utr;Parent=Msa0011240-mRNA-1 |
| chr1_1 | three_prime_UTR | 16968473 | 16968731 | 16968473 | ID=Msa0011240-mRNA-1:three_prime_utr;Parent=Msa0011240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
