Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105060 | XP_013466477.1 | 95.287 | 488 | 23 | 0 | 1 | 488 | 1 | 488 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105060 | sp|Q70DU8|AL3H1_ARATH | 70.146 | 479 | 143 | 0 | 8 | 486 | 4 | 482 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105060 | A0A072VFE4 | 95.287 | 488 | 23 | 0 | 1 | 488 | 1 | 488 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0105060 | 0.807654 | 4.547165e-50 | -8.615850e-47 |
| Msa0011240 | Msa0105060 | 0.811327 | 7.400203e-51 | -8.615850e-47 |
| Msa0012170 | Msa0105060 | 0.819922 | 9.006436e-53 | -8.615850e-47 |
| Msa0060250 | Msa0105060 | 0.803808 | 2.921090e-49 | -8.615850e-47 |
| Msa0105060 | Msa0105070 | 0.836729 | 7.888828e-57 | -8.615850e-47 |
| Msa0105060 | Msa0661650 | 0.803138 | 4.021673e-49 | -8.615850e-47 |
| Msa0105060 | Msa1147740 | 0.804631 | 1.969407e-49 | -8.615850e-47 |
| Msa0105060 | Msa1453320 | 0.802554 | 5.310396e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105060 | MtrunA17_Chr1g0159811 | 95.498 | 422 | 19 | 0 | 1 | 422 | 1 | 422 | 0.0 | 830 |
| Msa0105060 | MtrunA17_Chr3g0124811 | 78.261 | 483 | 105 | 0 | 6 | 488 | 8 | 490 | 0.0 | 810 |
| Msa0105060 | MtrunA17_Chr8g0384741 | 66.461 | 486 | 163 | 0 | 3 | 488 | 56 | 541 | 0.0 | 693 |
| Msa0105060 | MtrunA17_Chr8g0372381 | 50.333 | 451 | 224 | 0 | 20 | 470 | 13 | 463 | 7.33e-168 | 482 |
| Msa0105060 | MtrunA17_Chr2g0328781 | 47.599 | 479 | 248 | 1 | 11 | 486 | 15 | 493 | 9.98e-158 | 457 |
| Msa0105060 | MtrunA17_Chr4g0032441 | 52.203 | 454 | 214 | 1 | 20 | 470 | 9 | 462 | 8.91e-148 | 431 |
| Msa0105060 | MtrunA17_Chr3g0129271 | 48.677 | 189 | 94 | 1 | 183 | 368 | 31 | 219 | 1.52e-57 | 191 |
| Msa0105060 | MtrunA17_Chr2g0294411 | 25.111 | 450 | 305 | 10 | 34 | 466 | 106 | 540 | 3.86e-37 | 144 |
| Msa0105060 | MtrunA17_Chr4g0059521 | 29.640 | 361 | 239 | 8 | 95 | 445 | 130 | 485 | 4.39e-36 | 140 |
| Msa0105060 | MtrunA17_Chr3g0118121 | 29.917 | 361 | 238 | 7 | 95 | 445 | 130 | 485 | 1.33e-35 | 138 |
| Msa0105060 | MtrunA17_Chr2g0310091 | 26.812 | 414 | 284 | 10 | 42 | 446 | 127 | 530 | 3.42e-35 | 137 |
| Msa0105060 | MtrunA17_Chr3g0118081 | 29.178 | 353 | 233 | 8 | 103 | 445 | 170 | 515 | 2.15e-33 | 132 |
| Msa0105060 | MtrunA17_Chr4g0059221 | 29.738 | 343 | 231 | 7 | 111 | 446 | 196 | 535 | 6.09e-32 | 128 |
| Msa0105060 | MtrunA17_Chr8g0365221 | 28.256 | 407 | 276 | 10 | 48 | 446 | 134 | 532 | 1.23e-30 | 124 |
| Msa0105060 | MtrunA17_Chr3g0117861 | 30.321 | 343 | 229 | 8 | 111 | 446 | 194 | 533 | 1.94e-30 | 124 |
| Msa0105060 | MtrunA17_Chr8g0390651 | 29.395 | 347 | 219 | 12 | 115 | 446 | 159 | 494 | 9.41e-29 | 119 |
| Msa0105060 | MtrunA17_Chr8g0390631 | 28.212 | 397 | 251 | 15 | 73 | 446 | 100 | 485 | 1.38e-28 | 118 |
| Msa0105060 | MtrunA17_Chr6g0485301 | 28.857 | 350 | 227 | 11 | 110 | 446 | 153 | 493 | 2.71e-26 | 111 |
| Msa0105060 | MtrunA17_Chr4g0009161 | 46.789 | 109 | 54 | 2 | 183 | 287 | 116 | 224 | 1.05e-24 | 102 |
| Msa0105060 | MtrunA17_Chr6g0485311 | 27.551 | 392 | 250 | 15 | 77 | 445 | 110 | 490 | 1.92e-24 | 106 |
| Msa0105060 | MtrunA17_Chr4g0074171 | 25.111 | 450 | 300 | 12 | 1 | 429 | 35 | 468 | 3.08e-24 | 105 |
| Msa0105060 | MtrunA17_Chr1g0149961 | 25.310 | 403 | 282 | 10 | 37 | 429 | 75 | 468 | 1.03e-20 | 95.1 |
| Msa0105060 | MtrunA17_Chr2g0279751 | 27.132 | 387 | 235 | 14 | 48 | 406 | 80 | 447 | 2.01e-20 | 94.0 |
| Msa0105060 | MtrunA17_Chr4g0049641 | 26.623 | 308 | 205 | 8 | 113 | 406 | 174 | 474 | 1.66e-18 | 88.2 |
| Msa0105060 | MtrunA17_Chr2g0300801 | 23.615 | 343 | 244 | 8 | 113 | 442 | 152 | 489 | 5.43e-17 | 83.6 |
| Msa0105060 | MtrunA17_Chr1g0159821 | 49.275 | 69 | 35 | 0 | 8 | 76 | 8 | 76 | 1.59e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105060 | AT1G44170.1 | 70.146 | 479 | 143 | 0 | 8 | 486 | 4 | 482 | 0.0 | 729 |
| Msa0105060 | AT1G44170.2 | 70.146 | 479 | 143 | 0 | 8 | 486 | 4 | 482 | 0.0 | 729 |
| Msa0105060 | AT1G44170.3 | 73.966 | 411 | 107 | 0 | 76 | 486 | 9 | 419 | 0.0 | 662 |
| Msa0105060 | AT4G34240.4 | 65.424 | 483 | 167 | 0 | 6 | 488 | 50 | 532 | 0.0 | 654 |
| Msa0105060 | AT4G34240.1 | 65.424 | 483 | 167 | 0 | 6 | 488 | 65 | 547 | 0.0 | 654 |
| Msa0105060 | AT4G34240.3 | 70.720 | 403 | 118 | 0 | 86 | 488 | 3 | 405 | 0.0 | 587 |
| Msa0105060 | AT4G36250.1 | 46.809 | 470 | 247 | 1 | 20 | 486 | 12 | 481 | 6.30e-163 | 470 |
| Msa0105060 | AT4G34240.2 | 65.644 | 326 | 112 | 0 | 6 | 331 | 65 | 390 | 2.91e-151 | 437 |
| Msa0105060 | AT3G66658.1 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 1.32e-40 | 154 |
| Msa0105060 | AT3G66658.2 | 26.569 | 478 | 316 | 10 | 34 | 484 | 106 | 575 | 2.61e-40 | 153 |
| Msa0105060 | AT1G74920.2 | 29.781 | 366 | 241 | 9 | 95 | 449 | 125 | 485 | 8.62e-40 | 150 |
| Msa0105060 | AT1G74920.1 | 29.781 | 366 | 241 | 9 | 95 | 449 | 130 | 490 | 1.03e-39 | 150 |
| Msa0105060 | AT1G23800.1 | 28.090 | 445 | 302 | 11 | 12 | 446 | 89 | 525 | 4.77e-36 | 140 |
| Msa0105060 | AT1G79440.1 | 28.193 | 415 | 277 | 11 | 42 | 446 | 118 | 521 | 2.25e-35 | 138 |
| Msa0105060 | AT3G48170.1 | 28.488 | 344 | 231 | 7 | 112 | 445 | 147 | 485 | 9.50e-35 | 136 |
| Msa0105060 | AT3G48000.1 | 27.434 | 452 | 296 | 14 | 12 | 446 | 93 | 529 | 3.81e-29 | 120 |
| Msa0105060 | AT3G24503.1 | 27.114 | 343 | 236 | 9 | 113 | 446 | 155 | 492 | 3.87e-27 | 114 |
| Msa0105060 | AT2G24270.2 | 24.888 | 446 | 306 | 13 | 1 | 429 | 75 | 508 | 1.96e-21 | 97.8 |
| Msa0105060 | AT2G24270.4 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 2.50e-21 | 97.4 |
| Msa0105060 | AT2G24270.3 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 3.14e-21 | 97.1 |
| Msa0105060 | AT2G24270.1 | 24.888 | 446 | 306 | 13 | 1 | 429 | 35 | 468 | 3.14e-21 | 97.1 |
| Msa0105060 | AT1G54100.2 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 2.86e-20 | 94.0 |
| Msa0105060 | AT1G54100.1 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 2.86e-20 | 94.0 |
| Msa0105060 | AT2G14170.1 | 25.648 | 386 | 252 | 15 | 78 | 445 | 218 | 586 | 2.75e-18 | 88.2 |
| Msa0105060 | AT2G14170.2 | 25.648 | 386 | 252 | 15 | 78 | 445 | 109 | 477 | 3.25e-18 | 87.8 |
| Msa0105060 | AT2G14170.3 | 25.797 | 345 | 224 | 13 | 78 | 406 | 218 | 546 | 1.09e-16 | 83.2 |
| Msa0105060 | AT1G23800.2 | 28.627 | 255 | 169 | 7 | 12 | 259 | 89 | 337 | 2.11e-16 | 81.6 |
Find 127 sgRNAs with CRISPR-Local
Find 546 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATGATGACAAAGTTTC+TGG | 0.156174 | 1_3:-13335169 | Msa0105060:CDS |
| GCTATAATTCGTGCCTTATT+TGG | 0.169978 | 1_3:-13333711 | Msa0105060:CDS |
| CAATGTTTGGATCTTGCTTT+TGG | 0.204382 | 1_3:-13331795 | Msa0105060:three_prime_UTR |
| CGATCGCTTGATAAAGCTTT+TGG | 0.222465 | 1_3:-13335188 | Msa0105060:CDS |
| TTATCACTTGATCCAGTAAT+TGG | 0.245135 | 1_3:-13336296 | Msa0105060:CDS |
| TGATTCAAATATTAACTTAC+AGG | 0.261532 | 1_3:-13335718 | Msa0105060:intron |
| GCAATTCATACTTTGCCTTT+TGG | 0.268675 | 1_3:-13333909 | Msa0105060:CDS |
| TATGAACCAGGCGTTTAAAT+AGG | 0.290063 | 1_3:+13331750 | None:intergenic |
| ATTCCAAGACAAAGAATTCT+AGG | 0.305149 | 1_3:+13333683 | None:intergenic |
| ATTTATCATGACGAATGAAT+TGG | 0.307322 | 1_3:-13340093 | Msa0105060:exon |
| ATTCTAGGACCTTCCAAATA+AGG | 0.309348 | 1_3:+13333698 | None:intergenic |
| GCTGCAATAGCTCCAATTAC+TGG | 0.309379 | 1_3:+13336284 | None:intergenic |
| TCGTAGAAATGGAGGATAAA+TGG | 0.312765 | 1_3:+13340158 | None:intergenic |
| TTTGTTGTTATGATATAATC+TGG | 0.316109 | 1_3:+13335406 | None:intergenic |
| TTAAAATAGACTAAGTCATT+AGG | 0.327474 | 1_3:-13331853 | Msa0105060:three_prime_UTR |
| GATTAGCCCTACTGTTCTAT+TGG | 0.328993 | 1_3:-13334999 | Msa0105060:CDS |
| CATTTGGCAAGTATTTATTC+AGG | 0.329683 | 1_3:-13333646 | Msa0105060:three_prime_UTR |
| TCGTTGCTGGCAAAACTGTT+AGG | 0.339610 | 1_3:-13336212 | Msa0105060:CDS |
| AGCTTTGATGTGATAAATTC+AGG | 0.353189 | 1_3:-13334613 | Msa0105060:CDS |
| GTGGGTGATGAGGGTGGTAC+TGG | 0.353448 | 1_3:+13340267 | None:intergenic |
| GACTGTTTCTGCTGGTGGTT+TGG | 0.353589 | 1_3:-13334527 | Msa0105060:CDS |
| CATCAATCTCATCTTTGTAT+TGG | 0.356661 | 1_3:+13333761 | None:intergenic |
| ATTGGTTGAGTTCGTAGAAA+TGG | 0.358356 | 1_3:+13340147 | None:intergenic |
| GTGGGTAGGGTGGGTGATGA+GGG | 0.359789 | 1_3:+13340258 | None:intergenic |
| TCCAGCCACATCATCGTTGC+TGG | 0.362338 | 1_3:-13336225 | Msa0105060:CDS |
| GTTTCTGGTAAGATTGTTCA+TGG | 0.366193 | 1_3:-13335154 | Msa0105060:CDS |
| CCTCCAAGCTCCAGCACAAC+TGG | 0.367836 | 1_3:+13335759 | None:intergenic |
| GAGGATAAAGTAGATTATAT+TGG | 0.372992 | 1_3:+13340129 | None:intergenic |
| AGCCATTGTGTTAGTGCTCT+TGG | 0.380826 | 1_3:-13331883 | Msa0105060:three_prime_UTR |
| GGTAGGGTGGGTGATGAGGG+TGG | 0.384972 | 1_3:+13340261 | None:intergenic |
| ATGTTGTGATGTGGGTAGGG+TGG | 0.398165 | 1_3:+13340248 | None:intergenic |
| CTGAGACAAACATTTGGTTC+TGG | 0.403023 | 1_3:-13340020 | Msa0105060:CDS |
| CTCATCTTTGTATTGGTGTA+TGG | 0.403429 | 1_3:+13333768 | None:intergenic |
| ATATTTGAATCAACAACAAC+TGG | 0.414978 | 1_3:+13335729 | None:intergenic |
| ACACCAGTTGTGCTGGAGCT+TGG | 0.416382 | 1_3:-13335762 | Msa0105060:CDS |
| GGTCCTAGAATTCTTTGTCT+TGG | 0.419629 | 1_3:-13333686 | Msa0105060:exon |
| AAATGGAGGATAAATGGATT+TGG | 0.420295 | 1_3:+13340164 | None:intergenic |
| TGTGGGTAGGGTGGGTGATG+AGG | 0.421750 | 1_3:+13340257 | None:intergenic |
| TGTGTTAGTGCTCTTGGCTA+AGG | 0.422890 | 1_3:-13331877 | Msa0105060:three_prime_UTR |
| CGTTGCTGGCAAAACTGTTA+GGG | 0.425700 | 1_3:-13336211 | Msa0105060:CDS |
| CTTAATTCGTACCGTGATGA+TGG | 0.427177 | 1_3:+13334922 | None:intergenic |
| CGTGACAGAGACTTGATTTG+TGG | 0.428537 | 1_3:+13331940 | None:intergenic |
| TGTTGTGATGTGGGTAGGGT+GGG | 0.439445 | 1_3:+13340249 | None:intergenic |
| AGATAATAACCGAACCTCAT+AGG | 0.441099 | 1_3:+13339869 | None:intergenic |
| ATAATGAGCGAAGAGATATT+TGG | 0.444128 | 1_3:-13334956 | Msa0105060:CDS |
| GTTATGTTGTGATGTGGGTA+GGG | 0.447683 | 1_3:+13340245 | None:intergenic |
| TTTGTTAAGACTGTTTCTGC+TGG | 0.453254 | 1_3:-13334535 | Msa0105060:CDS |
| GATTGTTCATGGAGGTGAAA+AGG | 0.454910 | 1_3:-13335143 | Msa0105060:CDS |
| GATACTATTTCAGCTGAAGA+AGG | 0.460660 | 1_3:+13336684 | None:intergenic |
| GCATTGGATGGCTCCGGAAA+AGG | 0.463175 | 1_3:-13336830 | Msa0105060:intron |
| ATTGCAAGGTGGCAACTAGA+AGG | 0.464455 | 1_3:-13335477 | Msa0105060:intron |
| GGAGTAGGTGAGAGTGGAGT+GGG | 0.469025 | 1_3:-13333885 | Msa0105060:CDS |
| GGTTATGTTGTGATGTGGGT+AGG | 0.472641 | 1_3:+13340244 | None:intergenic |
| CTGTATTACTGCAACAAAAG+TGG | 0.474056 | 1_3:-13336133 | Msa0105060:CDS |
| ATATATGCAGCAAGAGGCTT+CGG | 0.476234 | 1_3:+13334589 | None:intergenic |
| AATGAACTGAGACAAACATT+TGG | 0.478069 | 1_3:-13340026 | Msa0105060:CDS |
| GCACCTTACACCAGTTGTGC+TGG | 0.485174 | 1_3:-13335769 | Msa0105060:CDS |
| CAGGCGTTTAAATAGGCTAT+GGG | 0.486103 | 1_3:+13331757 | None:intergenic |
| CCATAGCCTATTTAAACGCC+TGG | 0.488360 | 1_3:-13331756 | Msa0105060:three_prime_UTR |
| GTTAAGACTGTTTCTGCTGG+TGG | 0.490673 | 1_3:-13334532 | Msa0105060:CDS |
| CTCATCTATAAGAGTTGTTG+AGG | 0.493781 | 1_3:-13336174 | Msa0105060:CDS |
| CCAGTTGTGCTGGAGCTTGG+AGG | 0.497518 | 1_3:-13335759 | Msa0105060:CDS |
| CACTCAAGGAATTGAAGCAT+TGG | 0.498600 | 1_3:-13336846 | Msa0105060:CDS |
| GGTGATGAGGGTGGTACTGG+TGG | 0.502871 | 1_3:+13340270 | None:intergenic |
| CCAGGCGTTTAAATAGGCTA+TGG | 0.504067 | 1_3:+13331756 | None:intergenic |
| GAAGGATAATCGCTGGAAAG+TGG | 0.505649 | 1_3:-13335459 | Msa0105060:CDS |
| CTCATGTAAAACTGCACTCA+AGG | 0.507865 | 1_3:-13336860 | Msa0105060:CDS |
| GAGATTGATGAAGGCTCTCA+TGG | 0.510072 | 1_3:-13333748 | Msa0105060:CDS |
| GCTCCAGCACAACTGGTGTA+AGG | 0.510660 | 1_3:+13335766 | None:intergenic |
| GGAAAGTGGGGTTGCAACAA+TGG | 0.510938 | 1_3:-13335445 | Msa0105060:CDS |
| TACAAAGATGAGATTGATGA+AGG | 0.513208 | 1_3:-13333757 | Msa0105060:CDS |
| GTAATTGGAGCTATTGCAGC+TGG | 0.513650 | 1_3:-13336281 | Msa0105060:CDS |
| TAATTCGTGCCTTATTTGGA+AGG | 0.524002 | 1_3:-13333707 | Msa0105060:CDS |
| AAGAGTGGCACGCATTGTTA+TGG | 0.524412 | 1_3:-13335805 | Msa0105060:CDS |
| AAGGATAATCGCTGGAAAGT+GGG | 0.525366 | 1_3:-13335458 | Msa0105060:CDS |
| ATTGAAGCATTGGATGGCTC+CGG | 0.525858 | 1_3:-13336836 | Msa0105060:CDS |
| AAAAGACTATGCTCCTAAGT+TGG | 0.527792 | 1_3:-13335386 | Msa0105060:intron |
| CAATGAAGCGGGATCCATGC+TGG | 0.534188 | 1_3:-13340051 | Msa0105060:CDS |
| ATGAAGGCTCTCATGGGTGG+TGG | 0.534832 | 1_3:-13333741 | Msa0105060:CDS |
| GCCAGCAACGATGATGTGGC+TGG | 0.536814 | 1_3:+13336224 | None:intergenic |
| TTTGGAGGAGTAGGTGAGAG+TGG | 0.537231 | 1_3:-13333891 | Msa0105060:CDS |
| GGGACATCCAATAGAACAGT+AGG | 0.538615 | 1_3:+13334992 | None:intergenic |
| TCTCAGTTCATTCACCAGCA+TGG | 0.539045 | 1_3:+13340037 | None:intergenic |
| CTCTCACCTACTCCTCCAAA+AGG | 0.540508 | 1_3:+13333894 | None:intergenic |
| TGTGTTTGAAGAGAAAGAAG+AGG | 0.543838 | 1_3:+13340192 | None:intergenic |
| TCTTGAAACTGTCGCCTATG+AGG | 0.543885 | 1_3:-13339883 | Msa0105060:intron |
| AATATGTTCGACAATGAAGC+GGG | 0.550123 | 1_3:-13340062 | Msa0105060:CDS |
| ATCTTTGTATTGGTGTATGG+TGG | 0.551950 | 1_3:+13333771 | None:intergenic |
| TTATTCTCAAGCACAAGTCA+TGG | 0.557388 | 1_3:+13333577 | None:intergenic |
| TCATCTATAAGAGTTGTTGA+GGG | 0.559074 | 1_3:-13336173 | Msa0105060:CDS |
| AGGAGTAGGTGAGAGTGGAG+TGG | 0.559793 | 1_3:-13333886 | Msa0105060:CDS |
| TGTATTACTGCAACAAAAGT+GGG | 0.565567 | 1_3:-13336132 | Msa0105060:CDS |
| GCAACTAGAAGGATAATCGC+TGG | 0.565895 | 1_3:-13335466 | Msa0105060:CDS |
| GTAAATATATATGCAGCAAG+AGG | 0.571237 | 1_3:+13334583 | None:intergenic |
| GGTTGAGTTCGTAGAAATGG+AGG | 0.571556 | 1_3:+13340150 | None:intergenic |
| TTAATTCGTACCGTGATGAT+GGG | 0.573561 | 1_3:+13334923 | None:intergenic |
| AATCAAGTCTCTGTCACGAT+TGG | 0.576333 | 1_3:-13331935 | Msa0105060:three_prime_UTR |
| ACCGTGATGATGGGAAGTAA+TGG | 0.581585 | 1_3:+13334932 | None:intergenic |
| CAAGGAATTGAAGCATTGGA+TGG | 0.593249 | 1_3:-13336842 | Msa0105060:CDS |
| CATAGGCGACAGTTTCAAGA+GGG | 0.597623 | 1_3:+13339886 | None:intergenic |
| TAGGCGACAGTTTCAAGAGG+GGG | 0.599399 | 1_3:+13339888 | None:intergenic |
| AAAACTGTTAGGGGAATACA+TGG | 0.600533 | 1_3:-13336201 | Msa0105060:CDS |
| AAATTGGACAATAAAATACA+AGG | 0.604748 | 1_3:+13333620 | None:intergenic |
| TAAATATGTTACTATGAACC+AGG | 0.605342 | 1_3:+13331738 | None:intergenic |
| AGCCAAGAGCACTAACACAA+TGG | 0.605381 | 1_3:+13331881 | None:intergenic |
| AGGATAATCGCTGGAAAGTG+GGG | 0.609873 | 1_3:-13335457 | Msa0105060:CDS |
| GTGGCTGGAGAAATTTCTGA+TGG | 0.612827 | 1_3:+13336239 | None:intergenic |
| GAATATGTTCGACAATGAAG+CGG | 0.619480 | 1_3:-13340063 | Msa0105060:CDS |
| TATTGCAGCTGGTAATGCTG+TGG | 0.623724 | 1_3:-13336270 | Msa0105060:CDS |
| GTTGCTGGCAAAACTGTTAG+GGG | 0.625264 | 1_3:-13336210 | Msa0105060:CDS |
| TCCATTACTTCCCATCATCA+CGG | 0.627032 | 1_3:-13334933 | Msa0105060:intron |
| TACAAACGACAAGAAGCTCA+AGG | 0.637163 | 1_3:-13334563 | Msa0105060:CDS |
| GAAATAGTATCTGAACCACT+TGG | 0.643478 | 1_3:-13336672 | Msa0105060:CDS |
| AGTGGAGTGGGTGCATACCA+TGG | 0.646385 | 1_3:-13333873 | Msa0105060:CDS |
| GGACATCCAATAGAACAGTA+GGG | 0.647357 | 1_3:+13334993 | None:intergenic |
| ATGATCAACACAACTCCAAG+TGG | 0.650557 | 1_3:+13336657 | None:intergenic |
| GCTTTATCAAGCGATCGAAG+TGG | 0.653845 | 1_3:+13335194 | None:intergenic |
| TTGTGTTGATCATCTCTGCA+TGG | 0.653993 | 1_3:-13336647 | Msa0105060:CDS |
| AGATTGATGAAGGCTCTCAT+GGG | 0.665748 | 1_3:-13333747 | Msa0105060:CDS |
| TCATAGGCGACAGTTTCAAG+AGG | 0.669261 | 1_3:+13339885 | None:intergenic |
| CTCATTATCAGAGAATCACG+CGG | 0.673973 | 1_3:+13334971 | None:intergenic |
| TTGATGAAGGCTCTCATGGG+TGG | 0.678752 | 1_3:-13333744 | Msa0105060:CDS |
| ATAAATCAAGAAACAGCGAG+AGG | 0.701264 | 1_3:+13340110 | None:intergenic |
| TCTGGTAAGATTGTTCATGG+AGG | 0.703693 | 1_3:-13335151 | Msa0105060:CDS |
| ATAGGCGACAGTTTCAAGAG+GGG | 0.706757 | 1_3:+13339887 | None:intergenic |
| AGGCGTTTAAATAGGCTATG+GGG | 0.707596 | 1_3:+13331758 | None:intergenic |
| TCATTATCAGAGAATCACGC+GGG | 0.717383 | 1_3:+13334972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACATTTAATTTTTTTTTTT+TGG | - | chr1_3:13332156-13332175 | Msa0105060:intron | 10.0% |
| !!! | AATTAAAATTTGCATTTTTT+TGG | - | chr1_3:13333148-13333167 | Msa0105060:intron | 10.0% |
| !!! | TAATAATTTTTTTCATATCA+TGG | + | chr1_3:13334702-13334721 | None:intergenic | 10.0% |
| !!! | AAATATTTTAACATACAAAA+TGG | + | chr1_3:13335257-13335276 | None:intergenic | 10.0% |
| !! | AAAAAAAATAATTAAGATGT+AGG | + | chr1_3:13338805-13338824 | None:intergenic | 10.0% |
| !! | ACTATTCATAATATTAAAAA+TGG | - | chr1_3:13339414-13339433 | Msa0105060:intron | 10.0% |
| !! | CTATTCATAATATTAAAAAT+GGG | - | chr1_3:13339415-13339434 | Msa0105060:intron | 10.0% |
| !! | AAAATTACATTGTAATTAAA+AGG | + | chr1_3:13339609-13339628 | None:intergenic | 10.0% |
| !! | AAAAAGATATAAATAAATAG+GGG | + | chr1_3:13340274-13340293 | None:intergenic | 10.0% |
| !!! | TTATTAGTATTATTCTTTTG+TGG | - | chr1_3:13332054-13332073 | Msa0105060:intron | 15.0% |
| !!! | TCATTTATTGTTGTTATTTA+TGG | - | chr1_3:13332197-13332216 | Msa0105060:intron | 15.0% |
| !!! | CATTTATTGTTGTTATTTAT+GGG | - | chr1_3:13332198-13332217 | Msa0105060:intron | 15.0% |
| !!! | AATTAATAAGGGTATAATAA+TGG | - | chr1_3:13332729-13332748 | Msa0105060:intron | 15.0% |
| !! | AACATAAAAGCTTATTATTT+GGG | + | chr1_3:13332859-13332878 | None:intergenic | 15.0% |
| !! | TAACATAAAAGCTTATTATT+TGG | + | chr1_3:13332860-13332879 | None:intergenic | 15.0% |
| !! | TTTATGTAATATTCATAAGT+TGG | + | chr1_3:13332948-13332967 | None:intergenic | 15.0% |
| !!! | TAAAAATCCAAACTTAATTT+TGG | + | chr1_3:13333114-13333133 | None:intergenic | 15.0% |
| !!! | ACAAGTATATCTTTTTAAAA+TGG | - | chr1_3:13333280-13333299 | Msa0105060:intron | 15.0% |
| !!! | CAAACATTATCTTTAATTTT+GGG | + | chr1_3:13333918-13333937 | None:intergenic | 15.0% |
| !!! | CAAACATTATCTTTAATTTT+GGG | + | chr1_3:13333918-13333937 | None:intergenic | 15.0% |
| !! | TGAAATAAATATCATTACTA+TGG | + | chr1_3:13334188-13334207 | None:intergenic | 15.0% |
| !!! | ATTTGTGTTATTTTAGTTTT+TGG | - | chr1_3:13334355-13334374 | Msa0105060:intron | 15.0% |
| !! | TCATTTCATTAGAAAATATA+TGG | + | chr1_3:13337665-13337684 | None:intergenic | 15.0% |
| !! | GAAATTTATTCAAATAAAAG+TGG | - | chr1_3:13337732-13337751 | Msa0105060:intron | 15.0% |
| !!! | ATTTTATTGTCCAATTTTTT+TGG | - | chr1_3:13338258-13338277 | Msa0105060:intron | 15.0% |
| !! | TTACAAATATATTGTATCTA+TGG | + | chr1_3:13339343-13339362 | None:intergenic | 15.0% |
| !! | AAAGAATTAATTAATGTACT+TGG | + | chr1_3:13340242-13340261 | None:intergenic | 15.0% |
| !! | AATAATGACAAAATTAACGA+TGG | + | chr1_3:13332130-13332149 | None:intergenic | 20.0% |
| !! | AAATGACTATTATTTAGAGA+CGG | + | chr1_3:13332585-13332604 | None:intergenic | 20.0% |
| !! | CTCTAAATAATAGTCATTTA+AGG | - | chr1_3:13332586-13332605 | Msa0105060:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTCAA+TGG | - | chr1_3:13332634-13332653 | Msa0105060:intron | 20.0% |
| !! | TGGATGAAATTCAATTAATA+AGG | - | chr1_3:13332717-13332736 | Msa0105060:intron | 20.0% |
| !! | GGATGAAATTCAATTAATAA+GGG | - | chr1_3:13332718-13332737 | Msa0105060:intron | 20.0% |
| !! | AAAAATAATAAATGTTGCGT+TGG | - | chr1_3:13332754-13332773 | Msa0105060:intron | 20.0% |
| !! | ATCTGAATTCAAATAAATGA+TGG | - | chr1_3:13333243-13333262 | Msa0105060:intron | 20.0% |
| !! | ACTATTTAACAATACAAAGT+TGG | + | chr1_3:13333468-13333487 | None:intergenic | 20.0% |
| !!! | CCAAACATTATCTTTAATTT+TGG | + | chr1_3:13333919-13333938 | None:intergenic | 20.0% |
| !! | CCAAAATTAAAGATAATGTT+TGG | - | chr1_3:13333916-13333935 | Msa0105060:intron | 20.0% |
| !! | TTAAAGATAATGTTTGGATT+TGG | - | chr1_3:13333922-13333941 | Msa0105060:intron | 20.0% |
| !!! | CCAAACATTATCTTTAATTT+TGG | + | chr1_3:13333919-13333938 | None:intergenic | 20.0% |
| !! | CCAAAATTAAAGATAATGTT+TGG | - | chr1_3:13333916-13333935 | Msa0105060:intron | 20.0% |
| !! | TTAAAGATAATGTTTGGATT+TGG | - | chr1_3:13333922-13333941 | Msa0105060:intron | 20.0% |
| !!! | TTTGATAGCAAACTAATATT+AGG | - | chr1_3:13334653-13334672 | Msa0105060:intron | 20.0% |
| !!! | ACATTTTGAATACTTTTAAC+AGG | - | chr1_3:13334756-13334775 | Msa0105060:intron | 20.0% |
| !!! | CATTTTGAATACTTTTAACA+GGG | - | chr1_3:13334757-13334776 | Msa0105060:intron | 20.0% |
| !! | TATTTATATCTTCTCATACT+TGG | - | chr1_3:13334956-13334975 | Msa0105060:CDS | 20.0% |
| !! | TATGGTTTATAATTCTGAAT+TGG | - | chr1_3:13335813-13335832 | Msa0105060:CDS | 20.0% |
| !! | TTACTCAAATAAGTAATTGT+TGG | - | chr1_3:13336029-13336048 | Msa0105060:intron | 20.0% |
| !!! | TAAGTAATTGTTGGTTTTTT+AGG | - | chr1_3:13336038-13336057 | Msa0105060:intron | 20.0% |
| !! | TGATTCAAATATTAACTTAC+AGG | - | chr1_3:13336154-13336173 | Msa0105060:CDS | 20.0% |
| !!! | TTTGTTGTTATGATATAATC+TGG | + | chr1_3:13336469-13336488 | None:intergenic | 20.0% |
| !! | TTTATTTAGTGTTTAGTGTT+TGG | - | chr1_3:13336553-13336572 | Msa0105060:intron | 20.0% |
| !!! | ATTTTATGGAAAGAATCAAT+TGG | - | chr1_3:13336621-13336640 | Msa0105060:intron | 20.0% |
| !! | TGTCAAAAATTGTATTGTTA+TGG | - | chr1_3:13337576-13337595 | Msa0105060:intron | 20.0% |
| !!! | ATCATGCATTTATTTTCATT+TGG | - | chr1_3:13338210-13338229 | Msa0105060:intron | 20.0% |
| !! | AAATTGGACAATAAAATACA+AGG | + | chr1_3:13338255-13338274 | None:intergenic | 20.0% |
| !! | TAAGTTCAAACCAAAAAAAT+TGG | + | chr1_3:13338271-13338290 | None:intergenic | 20.0% |
| !!! | TCTTCTTTATTTCATATCAA+AGG | + | chr1_3:13338585-13338604 | None:intergenic | 20.0% |
| !! | TTGTAATTATAAGCACAAAA+TGG | - | chr1_3:13338824-13338843 | Msa0105060:intron | 20.0% |
| !!! | ATAATGTCTATTTTAGAGAT+CGG | - | chr1_3:13339565-13339584 | Msa0105060:intron | 20.0% |
| !!! | TAATTAAAAGGTGTATTTCT+AGG | + | chr1_3:13339597-13339616 | None:intergenic | 20.0% |
| !! | AAATTGCACAAATTATTAAG+GGG | + | chr1_3:13339708-13339727 | None:intergenic | 20.0% |
| !! | GAAATTGCACAAATTATTAA+GGG | + | chr1_3:13339709-13339728 | None:intergenic | 20.0% |
| !! | AGAAATTGCACAAATTATTA+AGG | + | chr1_3:13339710-13339729 | None:intergenic | 20.0% |
| !!! | TGTTATAGTTTTGTTTTTCA+AGG | - | chr1_3:13339743-13339762 | Msa0105060:intron | 20.0% |
| !! | TGTTGAAATAATACATTATG+GGG | + | chr1_3:13339903-13339922 | None:intergenic | 20.0% |
| !! | GTGTTGAAATAATACATTAT+GGG | + | chr1_3:13339904-13339923 | None:intergenic | 20.0% |
| !! | TGTGTTGAAATAATACATTA+TGG | + | chr1_3:13339905-13339924 | None:intergenic | 20.0% |
| !! | TTAAAATAGACTAAGTCATT+AGG | - | chr1_3:13340019-13340038 | Msa0105060:CDS | 20.0% |
| !!! | TTTTTTACAAGATCAAACTA+GGG | + | chr1_3:13340055-13340074 | None:intergenic | 20.0% |
| !!! | ATTTTTTACAAGATCAAACT+AGG | + | chr1_3:13340056-13340075 | None:intergenic | 20.0% |
| !! | CTTGTAAAAAATTCAATGTT+TGG | - | chr1_3:13340064-13340083 | Msa0105060:CDS | 20.0% |
| !! | GACAAAAAAATTTCTCAAAA+GGG | + | chr1_3:13340192-13340211 | None:intergenic | 20.0% |
| !! | AGACAAAAAAATTTCTCAAA+AGG | + | chr1_3:13340193-13340212 | None:intergenic | 20.0% |
| ! | GAGGATAAAGTAGATTATAT+TGG | + | chr1_3:13331746-13331765 | None:intergenic | 25.0% |
| ! | ATTTATCATGACGAATGAAT+TGG | - | chr1_3:13331779-13331798 | Msa0105060:three_prime_UTR | 25.0% |
| ! | AGTTTAAAAGCTTAAAAAGC+TGG | + | chr1_3:13331917-13331936 | None:intergenic | 25.0% |
| !!! | AACTACTATCACTTTTTGAA+AGG | - | chr1_3:13332433-13332452 | Msa0105060:intron | 25.0% |
| !!! | ACTACTATCACTTTTTGAAA+GGG | - | chr1_3:13332434-13332453 | Msa0105060:intron | 25.0% |
| !!! | AGTTTGTTTTTGAGAGTTAT+AGG | - | chr1_3:13332495-13332514 | Msa0105060:intron | 25.0% |
| ! | AATAAGTCAATTCATTCAGA+CGG | - | chr1_3:13333008-13333027 | Msa0105060:intron | 25.0% |
| !!! | ATTTTTTGCATTAATGCATG+TGG | - | chr1_3:13333058-13333077 | Msa0105060:intron | 25.0% |
| ! | TGTTAAATAGTTCCATGATA+TGG | - | chr1_3:13333477-13333496 | Msa0105060:intron | 25.0% |
| ! | TTGTACTAAATACCATATCA+TGG | + | chr1_3:13333492-13333511 | None:intergenic | 25.0% |
| !!! | TGAACAAATTGTTATTTTCG+TGG | - | chr1_3:13333569-13333588 | Msa0105060:intron | 25.0% |
| ! | TACTATGGTTTGAATACTTT+AGG | + | chr1_3:13334173-13334192 | None:intergenic | 25.0% |
| ! | TCTTTCATGATTTGACAAAT+AGG | - | chr1_3:13334442-13334461 | Msa0105060:intron | 25.0% |
| ! | AGTATAATAATTGAATGCAC+AGG | + | chr1_3:13334541-13334560 | None:intergenic | 25.0% |
| ! | AAGTTTGATAGAAAAACAGT+TGG | - | chr1_3:13334785-13334804 | Msa0105060:intron | 25.0% |
| !! | TTTTCTGATAGAATAACCTA+AGG | - | chr1_3:13335836-13335855 | Msa0105060:intron | 25.0% |
| ! | TTTCTGATAGAATAACCTAA+GGG | - | chr1_3:13335837-13335856 | Msa0105060:intron | 25.0% |
| ! | AAGTTTATTAAAATGATCCG+TGG | - | chr1_3:13335996-13336015 | Msa0105060:intron | 25.0% |
| ! | ATATTTGAATCAACAACAAC+TGG | + | chr1_3:13336146-13336165 | None:intergenic | 25.0% |
| ! | GTATTTAACGAGTATTATTC+TGG | - | chr1_3:13336215-13336234 | Msa0105060:CDS | 25.0% |
| ! | AGTAAATTTAAGTCTTAGTG+AGG | + | chr1_3:13336365-13336384 | None:intergenic | 25.0% |
| ! | TACTTGAACTTAAAATTGCA+AGG | - | chr1_3:13336381-13336400 | Msa0105060:intron | 25.0% |
| ! | GAAAAACTTATTACCAACTT+AGG | + | chr1_3:13336502-13336521 | None:intergenic | 25.0% |
| !! | ACTGAATTAGAGCAATTTTA+TGG | - | chr1_3:13336607-13336626 | Msa0105060:intron | 25.0% |
| !!! | ACTTTGTTTTCTTAAATTCC+AGG | - | chr1_3:13336848-13336867 | Msa0105060:CDS | 25.0% |
| !!! | CAAGATATTTTAATCCAACT+AGG | - | chr1_3:13337112-13337131 | Msa0105060:intron | 25.0% |
| !! | CATTTTATCTATTTCCTAGT+TGG | + | chr1_3:13337129-13337148 | None:intergenic | 25.0% |
| ! | CATATAAAAATGACATTCAC+AGG | + | chr1_3:13337446-13337465 | None:intergenic | 25.0% |
| ! | CAAAAATTGTATTGTTATGG+AGG | - | chr1_3:13337579-13337598 | Msa0105060:intron | 25.0% |
| !!! | TTCATATGTCTTTTTTCACT+TGG | - | chr1_3:13337932-13337951 | Msa0105060:intron | 25.0% |
| ! | TTTATATATACTCTCACAGA+AGG | - | chr1_3:13338386-13338405 | Msa0105060:intron | 25.0% |
| !! | TATCTTAGCATTCTTTAAAG+TGG | - | chr1_3:13338957-13338976 | Msa0105060:intron | 25.0% |
| !!! | ATCTTAGCATTCTTTAAAGT+GGG | - | chr1_3:13338958-13338977 | Msa0105060:intron | 25.0% |
| ! | CTACATATTCTAATAGAGAA+TGG | - | chr1_3:13339155-13339174 | Msa0105060:intron | 25.0% |
| !!! | GTCAATTTTTAGTATAGAGA+AGG | + | chr1_3:13339396-13339415 | None:intergenic | 25.0% |
| ! | AAATAATACATTATGGGGAA+GGG | + | chr1_3:13339898-13339917 | None:intergenic | 25.0% |
| ! | TAAATATGTTACTATGAACC+AGG | + | chr1_3:13340137-13340156 | None:intergenic | 25.0% |
| !! | ATAAATAAATAGGGGTATGT+TGG | + | chr1_3:13340266-13340285 | None:intergenic | 25.0% |
| ! | AAATGGAGGATAAATGGATT+TGG | + | chr1_3:13331711-13331730 | None:intergenic | 30.0% |
| AATGAACTGAGACAAACATT+TGG | - | chr1_3:13331846-13331865 | Msa0105060:three_prime_UTR | 30.0% | |
| TTAACGATGGAGATATTGTT+AGG | + | chr1_3:13332117-13332136 | None:intergenic | 30.0% | |
| ! | TTTATGGGTCCAGATTTTAT+TGG | - | chr1_3:13332213-13332232 | Msa0105060:intron | 30.0% |
| ! | TTATGGGTCCAGATTTTATT+GGG | - | chr1_3:13332214-13332233 | Msa0105060:intron | 30.0% |
| ! | CTTTTTACCCCAATAAAATC+TGG | + | chr1_3:13332225-13332244 | None:intergenic | 30.0% |
| CCGCTAACTACAATTAATAA+GGG | + | chr1_3:13332686-13332705 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+CGG | - | chr1_3:13332683-13332702 | Msa0105060:intron | 30.0% | |
| TCCGCTAACTACAATTAATA+AGG | + | chr1_3:13332687-13332706 | None:intergenic | 30.0% | |
| AGTTAGCGGAATAGTTAAAT+TGG | - | chr1_3:13332697-13332716 | Msa0105060:intron | 30.0% | |
| AAGAGACAGTTATTATGAGA+CGG | - | chr1_3:13332820-13332839 | Msa0105060:intron | 30.0% | |
| !! | GTAATATTCATAAGTTGGTC+TGG | + | chr1_3:13332943-13332962 | None:intergenic | 30.0% |
| TTAATGCAAAAAATCCCAAC+AGG | + | chr1_3:13333052-13333071 | None:intergenic | 30.0% | |
| AGACGATCCAAAATTAAGTT+TGG | - | chr1_3:13333104-13333123 | Msa0105060:intron | 30.0% | |
| ATATTCCAAATGTGTGAAAG+TGG | - | chr1_3:13333200-13333219 | Msa0105060:intron | 30.0% | |
| TATTCCAAATGTGTGAAAGT+GGG | - | chr1_3:13333201-13333220 | Msa0105060:intron | 30.0% | |
| CAGTCTATTTATCTGTTATG+AGG | - | chr1_3:13333308-13333327 | Msa0105060:intron | 30.0% | |
| GCTATTTAACAACACAATGT+TGG | + | chr1_3:13333389-13333408 | None:intergenic | 30.0% | |
| ATAGCAACACTTTAGATGTT+CGG | - | chr1_3:13333413-13333432 | Msa0105060:intron | 30.0% | |
| !!! | CAAATTGTTATTTTCGTGGT+CGG | - | chr1_3:13333573-13333592 | Msa0105060:intron | 30.0% |
| GTCTTGAATTATCTACACTA+TGG | - | chr1_3:13334081-13334100 | Msa0105060:intron | 30.0% | |
| ATAAGAAGAGAGTTATTGCA+CGG | + | chr1_3:13334134-13334153 | None:intergenic | 30.0% | |
| ATGATTAGATGCTTATGAGT+GGG | + | chr1_3:13334221-13334240 | None:intergenic | 30.0% | |
| TATGATTAGATGCTTATGAG+TGG | + | chr1_3:13334222-13334241 | None:intergenic | 30.0% | |
| ATCTTCATCATACTACTGTT+GGG | + | chr1_3:13334246-13334265 | None:intergenic | 30.0% | |
| AATCTTCATCATACTACTGT+TGG | + | chr1_3:13334247-13334266 | None:intergenic | 30.0% | |
| AAGTGTAACAACACATATTG+TGG | + | chr1_3:13334285-13334304 | None:intergenic | 30.0% | |
| ACACAAATTCAAAAAACCAG+AGG | + | chr1_3:13334343-13334362 | None:intergenic | 30.0% | |
| !!! | TCAAGAGTTATTTTTACCCT+TGG | - | chr1_3:13334605-13334624 | Msa0105060:CDS | 30.0% |
| CAAAAGAAACTTGAGTGTTA+AGG | + | chr1_3:13334637-13334656 | None:intergenic | 30.0% | |
| !!! | ATGTTTTGACCTGCATTAAA+GGG | + | chr1_3:13335154-13335173 | None:intergenic | 30.0% |
| TACTGAATGTTGCAAAATAG+CGG | + | chr1_3:13335404-13335423 | None:intergenic | 30.0% | |
| TATAGATTGAGGAAAGAACT+TGG | + | chr1_3:13335517-13335536 | None:intergenic | 30.0% | |
| AATATCGTCAGTATAGATTG+AGG | + | chr1_3:13335528-13335547 | None:intergenic | 30.0% | |
| TTATCACTTGATCCAGTAAT+TGG | - | chr1_3:13335576-13335595 | Msa0105060:intron | 30.0% | |
| TCATCTATAAGAGTTGTTGA+GGG | - | chr1_3:13335699-13335718 | Msa0105060:intron | 30.0% | |
| TGTATTACTGCAACAAAAGT+GGG | - | chr1_3:13335740-13335759 | Msa0105060:CDS | 30.0% | |
| AACCATAAAAGAAAACCAGA+GGG | + | chr1_3:13335800-13335819 | None:intergenic | 30.0% | |
| AAACCATAAAAGAAAACCAG+AGG | + | chr1_3:13335801-13335820 | None:intergenic | 30.0% | |
| ATGAATGAATGATTACCCTT+AGG | + | chr1_3:13335855-13335874 | None:intergenic | 30.0% | |
| TGAGTAAATGATATGATCCA+CGG | + | chr1_3:13336016-13336035 | None:intergenic | 30.0% | |
| !!! | ATTGTTGGTTTTTTAGGCAA+TGG | - | chr1_3:13336044-13336063 | Msa0105060:intron | 30.0% |
| AAAAGACTGAAAGAGAGATT+AGG | + | chr1_3:13336195-13336214 | None:intergenic | 30.0% | |
| ATGATAGCAAGTACTCTATA+TGG | + | chr1_3:13336327-13336346 | None:intergenic | 30.0% | |
| TTGAACTTAAAATTGCAAGG+TGG | - | chr1_3:13336384-13336403 | Msa0105060:intron | 30.0% | |
| !!! | CTTTTTTGGAGGTTTTTCAT+TGG | - | chr1_3:13336781-13336800 | Msa0105060:intron | 30.0% |
| ! | TTGTTTTCTTAAATTCCAGG+AGG | - | chr1_3:13336851-13336870 | Msa0105060:CDS | 30.0% |
| ATAATGAGCGAAGAGATATT+TGG | - | chr1_3:13336916-13336935 | Msa0105060:intron | 30.0% | |
| ! | AGCTTTGATGTGATAAATTC+AGG | - | chr1_3:13337259-13337278 | Msa0105060:intron | 30.0% |
| GTAAATATATATGCAGCAAG+AGG | + | chr1_3:13337292-13337311 | None:intergenic | 30.0% | |
| TAAACTAAGAGATTCAAGGA+TGG | + | chr1_3:13337417-13337436 | None:intergenic | 30.0% | |
| CACATAAACTAAGAGATTCA+AGG | + | chr1_3:13337421-13337440 | None:intergenic | 30.0% | |
| TGTAAATAGAAGTTCAGTGA+AGG | - | chr1_3:13337464-13337483 | Msa0105060:intron | 30.0% | |
| AACCAACTTAAAAGCTGATT+TGG | + | chr1_3:13337496-13337515 | None:intergenic | 30.0% | |
| AAGTATAACTTACTACAGTG+AGG | - | chr1_3:13337637-13337656 | Msa0105060:intron | 30.0% | |
| !!! | AGTGGTCTTTTTTTCTTCAA+CGG | - | chr1_3:13337750-13337769 | Msa0105060:intron | 30.0% |
| ! | GTGTCTTCAATCTGAAATAT+CGG | + | chr1_3:13337809-13337828 | None:intergenic | 30.0% |
| ! | CATCAAATGAGAATTTTCCA+TGG | + | chr1_3:13338019-13338038 | None:intergenic | 30.0% |
| !!! | GATAAAGAACTGCTTTTTTG+TGG | + | chr1_3:13338049-13338068 | None:intergenic | 30.0% |
| !!! | GTTCTTTATCGCAGTTTTTT+TGG | - | chr1_3:13338059-13338078 | Msa0105060:intron | 30.0% |
| !!! | TTTTTGGTGATGCTTCTATT+AGG | - | chr1_3:13338075-13338094 | Msa0105060:intron | 30.0% |
| CATCAATCTCATCTTTGTAT+TGG | + | chr1_3:13338114-13338133 | None:intergenic | 30.0% | |
| TACAAAGATGAGATTGATGA+AGG | - | chr1_3:13338115-13338134 | Msa0105060:intron | 30.0% | |
| ATTCCAAGACAAAGAATTCT+AGG | + | chr1_3:13338192-13338211 | None:intergenic | 30.0% | |
| CATTTGGCAAGTATTTATTC+AGG | - | chr1_3:13338226-13338245 | Msa0105060:intron | 30.0% | |
| CTAACATCAATTGGACAAAA+AGG | + | chr1_3:13338339-13338358 | None:intergenic | 30.0% | |
| ! | TTTTGTCCAATTGATGTTAG+TGG | - | chr1_3:13338339-13338358 | Msa0105060:intron | 30.0% |
| ATGTTGTACACAATGTAAAG+AGG | + | chr1_3:13338486-13338505 | None:intergenic | 30.0% | |
| AAATATCGACGAGGTTAAAT+AGG | + | chr1_3:13338656-13338675 | None:intergenic | 30.0% | |
| ATAGTAGTTAAATATCGACG+AGG | + | chr1_3:13338665-13338684 | None:intergenic | 30.0% | |
| !!! | GGTTTAGTTTTTAACATGAG+TGG | + | chr1_3:13338766-13338785 | None:intergenic | 30.0% |
| !! | ATGTAGGAAGTGTTTAAGTT+GGG | + | chr1_3:13338789-13338808 | None:intergenic | 30.0% |
| ATTTACCAAAATAACCCCAT+CGG | + | chr1_3:13338929-13338948 | None:intergenic | 30.0% | |
| AGTATCTCTTCATGTTGTAA+GGG | - | chr1_3:13339001-13339020 | Msa0105060:intron | 30.0% | |
| !!! | TGTTTTTTCTTTGGAATGGA+TGG | + | chr1_3:13339112-13339131 | None:intergenic | 30.0% |
| ATCCATTCCAAAGAAAAAAC+AGG | - | chr1_3:13339111-13339130 | Msa0105060:intron | 30.0% | |
| !!! | ATCCTGTTTTTTCTTTGGAA+TGG | + | chr1_3:13339116-13339135 | None:intergenic | 30.0% |
| !!! | TCATCATCCTGTTTTTTCTT+TGG | + | chr1_3:13339121-13339140 | None:intergenic | 30.0% |
| CATATTCTAATAGAGAATGG+AGG | - | chr1_3:13339158-13339177 | Msa0105060:intron | 30.0% | |
| ! | ATACATCCCTAAAAAGGTAT+GGG | + | chr1_3:13339239-13339258 | None:intergenic | 30.0% |
| AATACATCCCTAAAAAGGTA+TGG | + | chr1_3:13339240-13339259 | None:intergenic | 30.0% | |
| CCTATAATACATCCCTAAAA+AGG | + | chr1_3:13339245-13339264 | None:intergenic | 30.0% | |
| !! | CCTTTTTAGGGATGTATTAT+AGG | - | chr1_3:13339242-13339261 | Msa0105060:intron | 30.0% |
| !! | TTTTAGGGATGTATTATAGG+TGG | - | chr1_3:13339245-13339264 | Msa0105060:intron | 30.0% |
| CTGATAACATCACATAGAAA+AGG | - | chr1_3:13339298-13339317 | Msa0105060:intron | 30.0% | |
| GTACATCTAAATTGACACTT+AGG | + | chr1_3:13339520-13339539 | None:intergenic | 30.0% | |
| CTATCTCTATCCTTGTATAA+TGG | - | chr1_3:13339665-13339684 | Msa0105060:intron | 30.0% | |
| !! | TAAAAGGTGTGCTATTTCTA+TGG | - | chr1_3:13339797-13339816 | Msa0105060:intron | 30.0% |
| ACAGAGTTAGGAATTATTTC+TGG | - | chr1_3:13339828-13339847 | Msa0105060:intron | 30.0% | |
| !! | TTAGGAATTATTTCTGGACA+AGG | - | chr1_3:13339834-13339853 | Msa0105060:intron | 30.0% |
| GAAATAATACATTATGGGGA+AGG | + | chr1_3:13339899-13339918 | None:intergenic | 30.0% | |
| TGTATTATTTCAACACACGT+AGG | - | chr1_3:13339908-13339927 | Msa0105060:CDS | 30.0% | |
| TCAAAAAAAACAAGAGAGCT+AGG | + | chr1_3:13339970-13339989 | None:intergenic | 30.0% | |
| TCAAAAGGGTCCTATAATTA+GGG | + | chr1_3:13340178-13340197 | None:intergenic | 30.0% | |
| ! | CTCTTTTTATAAGACCCTTT+TGG | - | chr1_3:13340211-13340230 | Msa0105060:intron | 30.0% |
| TGTACTTGGAAATACCAAAA+GGG | + | chr1_3:13340228-13340247 | None:intergenic | 30.0% | |
| ATGTACTTGGAAATACCAAA+AGG | + | chr1_3:13340229-13340248 | None:intergenic | 30.0% | |
| TTAGTAGTAGTGTATGACGT+TGG | + | chr1_3:13331652-13331671 | None:intergenic | 35.0% | |
| TGTGTTTGAAGAGAAAGAAG+AGG | + | chr1_3:13331683-13331702 | None:intergenic | 35.0% | |
| TCGTAGAAATGGAGGATAAA+TGG | + | chr1_3:13331717-13331736 | None:intergenic | 35.0% | |
| ATTGGTTGAGTTCGTAGAAA+TGG | + | chr1_3:13331728-13331747 | None:intergenic | 35.0% | |
| ATAAATCAAGAAACAGCGAG+AGG | + | chr1_3:13331765-13331784 | None:intergenic | 35.0% | |
| GAATATGTTCGACAATGAAG+CGG | - | chr1_3:13331809-13331828 | Msa0105060:three_prime_UTR | 35.0% | |
| AATATGTTCGACAATGAAGC+GGG | - | chr1_3:13331810-13331829 | Msa0105060:three_prime_UTR | 35.0% | |
| GAAAAACACGAAGTTATGAC+TGG | - | chr1_3:13331874-13331893 | Msa0105060:three_prime_UTR | 35.0% | |
| AGATAATAACCGAACCTCAT+AGG | + | chr1_3:13332006-13332025 | None:intergenic | 35.0% | |
| TATTACATGTACTCAGACGA+AGG | - | chr1_3:13332084-13332103 | Msa0105060:intron | 35.0% | |
| ! | TATGGGTCCAGATTTTATTG+GGG | - | chr1_3:13332215-13332234 | Msa0105060:intron | 35.0% |
| !! | AATTGATGAGAGTGCTTGAT+TGG | - | chr1_3:13332252-13332271 | Msa0105060:intron | 35.0% |
| !! | ATTGATGAGAGTGCTTGATT+GGG | - | chr1_3:13332253-13332272 | Msa0105060:intron | 35.0% |
| ! | ACATTCACTCAGATTTTCCT+AGG | + | chr1_3:13332321-13332340 | None:intergenic | 35.0% |
| !!! | AGTGTGGGTTTTTTATGGTT+TGG | - | chr1_3:13332396-13332415 | Msa0105060:intron | 35.0% |
| ACCAATCTTCTACTTATAGG+TGG | - | chr1_3:13332457-13332476 | Msa0105060:intron | 35.0% | |
| ACCACCTATAAGTAGAAGAT+TGG | + | chr1_3:13332461-13332480 | None:intergenic | 35.0% | |
| AATCTTCTACTTATAGGTGG+TGG | - | chr1_3:13332460-13332479 | Msa0105060:intron | 35.0% | |
| GACTATTATTTAGAGACGGA+GGG | + | chr1_3:13332581-13332600 | None:intergenic | 35.0% | |
| TGACTATTATTTAGAGACGG+AGG | + | chr1_3:13332582-13332601 | None:intergenic | 35.0% | |
| ! | AGTCATTTAAGGTTTGTGCA+CGG | - | chr1_3:13332597-13332616 | Msa0105060:intron | 35.0% |
| GATTCATATTCCTTCCTGTT+GGG | - | chr1_3:13333035-13333054 | Msa0105060:intron | 35.0% | |
| ! | TCACACATTTGGAATATCAG+TGG | + | chr1_3:13333197-13333216 | None:intergenic | 35.0% |
| ATTCCAAATGTGTGAAAGTG+GGG | - | chr1_3:13333202-13333221 | Msa0105060:intron | 35.0% | |
| ATTCAGATACCTAGTAGTTG+TGG | + | chr1_3:13333231-13333250 | None:intergenic | 35.0% | |
| TAGCATCTTAAGTGTCTCAA+TGG | + | chr1_3:13333334-13333353 | None:intergenic | 35.0% | |
| ATTGAGACACTTAAGATGCT+AGG | - | chr1_3:13333333-13333352 | Msa0105060:intron | 35.0% | |
| ! | TTTTATAGTAGTGCACGTGA+GGG | - | chr1_3:13333646-13333665 | Msa0105060:three_prime_UTR | 35.0% |
| AAAGACGTGCACTACTAAAA+GGG | + | chr1_3:13333841-13333860 | None:intergenic | 35.0% | |
| GGTATATGCTATTAAGTGTG+TGG | - | chr1_3:13334376-13334395 | Msa0105060:intron | 35.0% | |
| ATATGCTATTAAGTGTGTGG+TGG | - | chr1_3:13334379-13334398 | Msa0105060:intron | 35.0% | |
| TCATCTGGAAAGGAAAATGT+AGG | + | chr1_3:13334406-13334425 | None:intergenic | 35.0% | |
| !!! | AGTTATTTTTACCCTTGGAC+AGG | - | chr1_3:13334610-13334629 | Msa0105060:CDS | 35.0% |
| ! | TGTTGTTATTGTTGTGTGAC+TGG | - | chr1_3:13334808-13334827 | Msa0105060:intron | 35.0% |
| TGATTTCCTGACTATTGCTT+AGG | - | chr1_3:13334888-13334907 | Msa0105060:intron | 35.0% | |
| ! | ACTATTGCTTAGGTTGTTGA+AGG | - | chr1_3:13334898-13334917 | Msa0105060:intron | 35.0% |
| ! | CTATTGCTTAGGTTGTTGAA+GGG | - | chr1_3:13334899-13334918 | Msa0105060:intron | 35.0% |
| !!! | TGTTTTGACCTGCATTAAAG+GGG | + | chr1_3:13335153-13335172 | None:intergenic | 35.0% |
| !!! | GATGTTTTGACCTGCATTAA+AGG | + | chr1_3:13335155-13335174 | None:intergenic | 35.0% |
| GATACTATTTCAGCTGAAGA+AGG | + | chr1_3:13335191-13335210 | None:intergenic | 35.0% | |
| GAAATAGTATCTGAACCACT+TGG | - | chr1_3:13335200-13335219 | Msa0105060:CDS | 35.0% | |
| AAAACTGTTAGGGGAATACA+TGG | - | chr1_3:13335671-13335690 | Msa0105060:intron | 35.0% | |
| CTCATCTATAAGAGTTGTTG+AGG | - | chr1_3:13335698-13335717 | Msa0105060:intron | 35.0% | |
| CTGTATTACTGCAACAAAAG+TGG | - | chr1_3:13335739-13335758 | Msa0105060:CDS | 35.0% | |
| ! | TGGGACAAAATTTTCTACAC+AGG | - | chr1_3:13335759-13335778 | Msa0105060:CDS | 35.0% |
| ACCATAAAAGAAAACCAGAG+GGG | + | chr1_3:13335799-13335818 | None:intergenic | 35.0% | |
| ACGAGAACTAGTGCAATAAA+TGG | + | chr1_3:13335904-13335923 | None:intergenic | 35.0% | |
| ! | AAAACGACTTCAAGTTTGCT+TGG | - | chr1_3:13335973-13335992 | Msa0105060:intron | 35.0% |
| !!! | TTTTTTAGGCAATGGAAGAG+TGG | - | chr1_3:13336052-13336071 | Msa0105060:intron | 35.0% |
| ! | TGCTATCATTCTAGTTACCT+TGG | - | chr1_3:13336338-13336357 | Msa0105060:intron | 35.0% |
| AAAAGACTATGCTCCTAAGT+TGG | - | chr1_3:13336486-13336505 | Msa0105060:intron | 35.0% | |
| TTGGATGATGACAAAGTTTC+TGG | - | chr1_3:13336703-13336722 | Msa0105060:CDS | 35.0% | |
| !! | GTTTCTGGTAAGATTGTTCA+TGG | - | chr1_3:13336718-13336737 | Msa0105060:intron | 35.0% |
| TTAATTCGTACCGTGATGAT+GGG | + | chr1_3:13336952-13336971 | None:intergenic | 35.0% | |
| TTTGTTTCCTTTCTCGAAAC+AGG | - | chr1_3:13337219-13337238 | Msa0105060:intron | 35.0% | |
| !! | TTTGTTAAGACTGTTTCTGC+TGG | - | chr1_3:13337337-13337356 | Msa0105060:intron | 35.0% |
| !! | CACCAAATCAGCTTTTAAGT+TGG | - | chr1_3:13337491-13337510 | Msa0105060:intron | 35.0% |
| !! | CTAGAAGTAGCTTTAAAACC+AGG | + | chr1_3:13337529-13337548 | None:intergenic | 35.0% |
| ATCAGTAGAAGCAAATGCAA+GGG | + | chr1_3:13337700-13337719 | None:intergenic | 35.0% | |
| AATCAGTAGAAGCAAATGCA+AGG | + | chr1_3:13337701-13337720 | None:intergenic | 35.0% | |
| ! | GCAATTCATACTTTGCCTTT+TGG | - | chr1_3:13337963-13337982 | Msa0105060:intron | 35.0% |
| ! | ATTCATACTTTGCCTTTTGG+AGG | - | chr1_3:13337966-13337985 | Msa0105060:intron | 35.0% |
| ! | ATCTTTGTATTGGTGTATGG+TGG | + | chr1_3:13338104-13338123 | None:intergenic | 35.0% |
| ! | CTCATCTTTGTATTGGTGTA+TGG | + | chr1_3:13338107-13338126 | None:intergenic | 35.0% |
| ! | GCTATAATTCGTGCCTTATT+TGG | - | chr1_3:13338161-13338180 | Msa0105060:intron | 35.0% |
| !! | TAATTCGTGCCTTATTTGGA+AGG | - | chr1_3:13338165-13338184 | Msa0105060:intron | 35.0% |
| !! | ATTCTAGGACCTTCCAAATA+AGG | + | chr1_3:13338177-13338196 | None:intergenic | 35.0% |
| TTATTCTCAAGCACAAGTCA+TGG | + | chr1_3:13338298-13338317 | None:intergenic | 35.0% | |
| CTTGTGCTTGAGAATAAAGT+AGG | - | chr1_3:13338301-13338320 | Msa0105060:intron | 35.0% | |
| !!! | GAGTTGAGTTTTGAAAGTGA+GGG | - | chr1_3:13338542-13338561 | Msa0105060:intron | 35.0% |
| !!! | AGTTGAGTTTTGAAAGTGAG+GGG | - | chr1_3:13338543-13338562 | Msa0105060:intron | 35.0% |
| ! | CTACTATCGTTTAGCTTCAT+TGG | - | chr1_3:13338678-13338697 | Msa0105060:intron | 35.0% |
| ! | CATTGGTAGTTAACTATCGT+CGG | - | chr1_3:13338695-13338714 | Msa0105060:intron | 35.0% |
| ! | TAACATGAGTGGTGATGAAA+GGG | + | chr1_3:13338755-13338774 | None:intergenic | 35.0% |
| ! | TTAACATGAGTGGTGATGAA+AGG | + | chr1_3:13338756-13338775 | None:intergenic | 35.0% |
| !! | TGTAGGAAGTGTTTAAGTTG+GGG | + | chr1_3:13338788-13338807 | None:intergenic | 35.0% |
| !! | GATGTAGGAAGTGTTTAAGT+TGG | + | chr1_3:13338790-13338809 | None:intergenic | 35.0% |
| !!! | GGGTTATTTTGGTAAATTCG+TGG | - | chr1_3:13338932-13338951 | Msa0105060:intron | 35.0% |
| CAGTATCTCTTCATGTTGTA+AGG | - | chr1_3:13339000-13339019 | Msa0105060:intron | 35.0% | |
| TGTAAGGGACAAACTATAGA+AGG | - | chr1_3:13339016-13339035 | Msa0105060:intron | 35.0% | |
| ! | TCTTCATCCCATACCTTTTT+AGG | - | chr1_3:13339229-13339248 | Msa0105060:intron | 35.0% |
| ! | CTTCATCCCATACCTTTTTA+GGG | - | chr1_3:13339230-13339249 | Msa0105060:intron | 35.0% |
| TTATAGGTGGTGAGTGAATA+AGG | - | chr1_3:13339258-13339277 | Msa0105060:intron | 35.0% | |
| TATAGGTGGTGAGTGAATAA+GGG | - | chr1_3:13339259-13339278 | Msa0105060:intron | 35.0% | |
| GGCTATTCATAAACCCATTT+GGG | - | chr1_3:13339436-13339455 | Msa0105060:intron | 35.0% | |
| ATCATCAGACAAACCCAAAT+GGG | + | chr1_3:13339452-13339471 | None:intergenic | 35.0% | |
| TATCATCAGACAAACCCAAA+TGG | + | chr1_3:13339453-13339472 | None:intergenic | 35.0% | |
| TGCACAAATTATTAAGGGGT+GGG | + | chr1_3:13339704-13339723 | None:intergenic | 35.0% | |
| TTGCACAAATTATTAAGGGG+TGG | + | chr1_3:13339705-13339724 | None:intergenic | 35.0% | |
| ACTTCTTCATCTACACTTGA+TGG | - | chr1_3:13339766-13339785 | Msa0105060:intron | 35.0% | |
| CTTCTTCATCTACACTTGAT+GGG | - | chr1_3:13339767-13339786 | Msa0105060:intron | 35.0% | |
| TTCTTCATCTACACTTGATG+GGG | - | chr1_3:13339768-13339787 | Msa0105060:intron | 35.0% | |
| CTTGATGGGGTAAAGATAAA+AGG | - | chr1_3:13339781-13339800 | Msa0105060:intron | 35.0% | |
| ! | CAATGTTTGGATCTTGCTTT+TGG | - | chr1_3:13340077-13340096 | Msa0105060:CDS | 35.0% |
| TATGAACCAGGCGTTTAAAT+AGG | + | chr1_3:13340125-13340144 | None:intergenic | 35.0% | |
| CTCAAAAGGGTCCTATAATT+AGG | + | chr1_3:13340179-13340198 | None:intergenic | 35.0% | |
| GTTATGTTGTGATGTGGGTA+GGG | + | chr1_3:13331630-13331649 | None:intergenic | 40.0% | |
| ! | CGTTGGTTATGTTGTGATGT+GGG | + | chr1_3:13331635-13331654 | None:intergenic | 40.0% |
| ! | ACGTTGGTTATGTTGTGATG+TGG | + | chr1_3:13331636-13331655 | None:intergenic | 40.0% |
| ! | CTGAGACAAACATTTGGTTC+TGG | - | chr1_3:13331852-13331871 | Msa0105060:three_prime_UTR | 40.0% |
| CGATGGAGATATTGTTAGGT+CGG | + | chr1_3:13332113-13332132 | None:intergenic | 40.0% | |
| GTTCTGTTCTGTTGAATCCT+AGG | - | chr1_3:13332301-13332320 | Msa0105060:intron | 40.0% | |
| !!! | GTTGCAGTGTGGGTTTTTTA+TGG | - | chr1_3:13332391-13332410 | Msa0105060:intron | 40.0% |
| GGGACCAATCTTCTACTTAT+AGG | - | chr1_3:13332454-13332473 | Msa0105060:intron | 40.0% | |
| AGGTTTGTGCACGGTTATTA+AGG | - | chr1_3:13332606-13332625 | Msa0105060:intron | 40.0% | |
| AGACAGTTATTATGAGACGG+AGG | - | chr1_3:13332823-13332842 | Msa0105060:intron | 40.0% | |
| GACAGTTATTATGAGACGGA+GGG | - | chr1_3:13332824-13332843 | Msa0105060:intron | 40.0% | |
| AGTCAATTCATTCAGACGGT+TGG | - | chr1_3:13333012-13333031 | Msa0105060:intron | 40.0% | |
| GTCAATTCATTCAGACGGTT+GGG | - | chr1_3:13333013-13333032 | Msa0105060:intron | 40.0% | |
| GGATTCATATTCCTTCCTGT+TGG | - | chr1_3:13333034-13333053 | Msa0105060:intron | 40.0% | |
| TGCAAAAAATCCCAACAGGA+AGG | + | chr1_3:13333048-13333067 | None:intergenic | 40.0% | |
| GCATTAATGCATGTGGAATG+TGG | - | chr1_3:13333065-13333084 | Msa0105060:intron | 40.0% | |
| ATTCCCCACTTTCACACATT+TGG | + | chr1_3:13333208-13333227 | None:intergenic | 40.0% | |
| CACTTAAGATGCTAGGTCTT+AGG | - | chr1_3:13333340-13333359 | Msa0105060:intron | 40.0% | |
| ACACAATGTTGGATCGTCAA+TGG | + | chr1_3:13333378-13333397 | None:intergenic | 40.0% | |
| CACTTTAGATGTTCGGTCAT+AGG | - | chr1_3:13333420-13333439 | Msa0105060:intron | 40.0% | |
| ! | GTTTTATAGTAGTGCACGTG+AGG | - | chr1_3:13333645-13333664 | Msa0105060:three_prime_UTR | 40.0% |
| TTTATAGTAGTGCACGTGAG+GGG | - | chr1_3:13333647-13333666 | Msa0105060:three_prime_UTR | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr1_3:13333692-13333711 | Msa0105060:exon | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr1_3:13333735-13333754 | Msa0105060:CDS | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr1_3:13333736-13333755 | Msa0105060:CDS | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr1_3:13333743-13333762 | None:intergenic | 40.0% |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr1_3:13333741-13333760 | Msa0105060:CDS | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_3:13333767-13333786 | Msa0105060:CDS | 40.0% | |
| GAAAGACGTGCACTACTAAA+AGG | + | chr1_3:13333842-13333861 | None:intergenic | 40.0% | |
| TGCACGGAATAGACTCTATT+TGG | + | chr1_3:13334118-13334137 | None:intergenic | 40.0% | |
| ATTAGATGCTTATGAGTGGG+TGG | + | chr1_3:13334218-13334237 | None:intergenic | 40.0% | |
| GTGCTTCTAATCATCTGGAA+AGG | + | chr1_3:13334416-13334435 | None:intergenic | 40.0% | |
| TGCTTGTGCTTCTAATCATC+TGG | + | chr1_3:13334421-13334440 | None:intergenic | 40.0% | |
| ATCAAAGATCTCCTAACCAG+TGG | + | chr1_3:13334501-13334520 | None:intergenic | 40.0% | |
| ATACTCCAGCAAGTGTGAAT+TGG | - | chr1_3:13334556-13334575 | Msa0105060:CDS | 40.0% | |
| AACAACCAATTCACACTTGC+TGG | + | chr1_3:13334564-13334583 | None:intergenic | 40.0% | |
| TGTTATTGTTGTGTGACTGG+AGG | - | chr1_3:13334811-13334830 | Msa0105060:intron | 40.0% | |
| AGTCTGAGTTGTGTAGTTAG+TGG | - | chr1_3:13334839-13334858 | Msa0105060:intron | 40.0% | |
| CAACAACCTAAGCAATAGTC+AGG | + | chr1_3:13334897-13334916 | None:intergenic | 40.0% | |
| GGTGTAATTGCATTGCAGAT+TGG | - | chr1_3:13334977-13334996 | Msa0105060:CDS | 40.0% | |
| CTCATGTAAAACTGCACTCA+AGG | - | chr1_3:13335012-13335031 | Msa0105060:intron | 40.0% | |
| CACTCAAGGAATTGAAGCAT+TGG | - | chr1_3:13335026-13335045 | Msa0105060:intron | 40.0% | |
| !! | CAAGGAATTGAAGCATTGGA+TGG | - | chr1_3:13335030-13335049 | Msa0105060:intron | 40.0% |
| ! | CACTGAAAACGTACCTTTTC+CGG | + | chr1_3:13335058-13335077 | None:intergenic | 40.0% |
| GACATAGTATCTGAACCACT+TGG | - | chr1_3:13335105-13335124 | Msa0105060:intron | 40.0% | |
| CATGAATTCCCCTTTAATGC+AGG | - | chr1_3:13335142-13335161 | Msa0105060:CDS | 40.0% | |
| ATGATCAACACAACTCCAAG+TGG | + | chr1_3:13335218-13335237 | None:intergenic | 40.0% | |
| ! | TTGTGTTGATCATCTCTGCA+TGG | - | chr1_3:13335225-13335244 | Msa0105060:CDS | 40.0% |
| AGCTTGGAGGGAAGAAAAAA+GGG | + | chr1_3:13335299-13335318 | None:intergenic | 40.0% | |
| TAGCTTGGAGGGAAGAAAAA+AGG | + | chr1_3:13335300-13335319 | None:intergenic | 40.0% | |
| ! | ATTGACATCACTAGCTTGGA+GGG | + | chr1_3:13335311-13335330 | None:intergenic | 40.0% |
| ACTGGATCAAGTGATAACAC+TGG | + | chr1_3:13335573-13335592 | None:intergenic | 40.0% | |
| !!! | TCCCCTCTGGTTTTCTTTTA+TGG | - | chr1_3:13335795-13335814 | Msa0105060:CDS | 40.0% |
| ! | CTTTGATCACAGAGTGTTCA+GGG | - | chr1_3:13335939-13335958 | Msa0105060:intron | 40.0% |
| ! | GTACGTGTATCTTGTCACTT+TGG | - | chr1_3:13336258-13336277 | Msa0105060:CDS | 40.0% |
| GTGTACATGCATGATGTATC+TGG | + | chr1_3:13336285-13336304 | None:intergenic | 40.0% | |
| TTAAGTCTTAGTGAGGTCCA+AGG | + | chr1_3:13336358-13336377 | None:intergenic | 40.0% | |
| AAGGATAATCGCTGGAAAGT+GGG | - | chr1_3:13336414-13336433 | Msa0105060:intron | 40.0% | |
| TAGAGAATCCACCTAGGAAT+AGG | + | chr1_3:13336584-13336603 | None:intergenic | 40.0% | |
| ! | AGTCTTTAGAGAATCCACCT+AGG | + | chr1_3:13336590-13336609 | None:intergenic | 40.0% |
| ! | CGATCGCTTGATAAAGCTTT+TGG | - | chr1_3:13336684-13336703 | Msa0105060:CDS | 40.0% |
| TCTGGTAAGATTGTTCATGG+AGG | - | chr1_3:13336721-13336740 | Msa0105060:intron | 40.0% | |
| GATTGTTCATGGAGGTGAAA+AGG | - | chr1_3:13336729-13336748 | Msa0105060:intron | 40.0% | |
| !!! | AAGCTCGCTGTCTTCTTTTT+TGG | - | chr1_3:13336767-13336786 | Msa0105060:intron | 40.0% |
| ! | GATTAGCCCTACTGTTCTAT+TGG | - | chr1_3:13336873-13336892 | Msa0105060:CDS | 40.0% |
| GGACATCCAATAGAACAGTA+GGG | + | chr1_3:13336882-13336901 | None:intergenic | 40.0% | |
| TCATTATCAGAGAATCACGC+GGG | + | chr1_3:13336903-13336922 | None:intergenic | 40.0% | |
| CTCATTATCAGAGAATCACG+CGG | + | chr1_3:13336904-13336923 | None:intergenic | 40.0% | |
| TCCATTACTTCCCATCATCA+CGG | - | chr1_3:13336939-13336958 | Msa0105060:intron | 40.0% | |
| CTTAATTCGTACCGTGATGA+TGG | + | chr1_3:13336953-13336972 | None:intergenic | 40.0% | |
| CATCATCACGGTACGAATTA+AGG | - | chr1_3:13336951-13336970 | Msa0105060:intron | 40.0% | |
| TTATCGACCTGTTTCGAGAA+AGG | + | chr1_3:13337229-13337248 | None:intergenic | 40.0% | |
| ATATATGCAGCAAGAGGCTT+CGG | + | chr1_3:13337286-13337305 | None:intergenic | 40.0% | |
| TACAAACGACAAGAAGCTCA+AGG | - | chr1_3:13337309-13337328 | Msa0105060:intron | 40.0% | |
| !!! | TAGTGCGTCATAGTTTTGAC+TGG | - | chr1_3:13337892-13337911 | Msa0105060:intron | 40.0% |
| AGATTGATGAAGGCTCTCAT+GGG | - | chr1_3:13338125-13338144 | Msa0105060:intron | 40.0% | |
| GGTCCTAGAATTCTTTGTCT+TGG | - | chr1_3:13338186-13338205 | Msa0105060:intron | 40.0% | |
| GCATGACCACTAACATCAAT+TGG | + | chr1_3:13338348-13338367 | None:intergenic | 40.0% | |
| GTACAATTAGAGCATGCTAG+CGG | - | chr1_3:13338456-13338475 | Msa0105060:intron | 40.0% | |
| CAAAACTCAACTCGCAAACA+AGG | + | chr1_3:13338535-13338554 | None:intergenic | 40.0% | |
| !!! | CGAGTTGAGTTTTGAAAGTG+AGG | - | chr1_3:13338541-13338560 | Msa0105060:intron | 40.0% |
| !!! | AGTTTTGAAAGTGAGGGGTT+TGG | - | chr1_3:13338548-13338567 | Msa0105060:intron | 40.0% |
| !!! | GTTTTGAAAGTGAGGGGTTT+GGG | - | chr1_3:13338549-13338568 | Msa0105060:intron | 40.0% |
| !! | TTAACTATCGTCGGTTCCAT+CGG | - | chr1_3:13338704-13338723 | Msa0105060:intron | 40.0% |
| !! | GTAGGAAGTGTTTAAGTTGG+GGG | + | chr1_3:13338787-13338806 | None:intergenic | 40.0% |
| ACTGCCGTTAAATTAGAAGC+CGG | - | chr1_3:13338859-13338878 | Msa0105060:intron | 40.0% | |
| !! | ACTGCCGGCTTCTAATTTAA+CGG | + | chr1_3:13338866-13338885 | None:intergenic | 40.0% |
| ! | AACTACCGATGGGGTTATTT+TGG | - | chr1_3:13338921-13338940 | Msa0105060:intron | 40.0% |
| ACCATCAGGCTCATGAATTT+GGG | + | chr1_3:13339071-13339090 | None:intergenic | 40.0% | |
| AACCATCAGGCTCATGAATT+TGG | + | chr1_3:13339072-13339091 | None:intergenic | 40.0% | |
| GGGCTATTCATAAACCCATT+TGG | - | chr1_3:13339435-13339454 | Msa0105060:intron | 40.0% | |
| TTGAGGAAGAACACACTTCA+AGG | + | chr1_3:13339487-13339506 | None:intergenic | 40.0% | |
| ACTTAGGAGAATCGAACTTG+AGG | + | chr1_3:13339504-13339523 | None:intergenic | 40.0% | |
| GAAGAGCAGACCATTATACA+AGG | + | chr1_3:13339678-13339697 | None:intergenic | 40.0% | |
| ATGGTACAGACTACAGAGTT+AGG | - | chr1_3:13339816-13339835 | Msa0105060:intron | 40.0% | |
| AATCAAGTCTCTGTCACGAT+TGG | - | chr1_3:13339937-13339956 | Msa0105060:CDS | 40.0% | |
| AGGCGTTTAAATAGGCTATG+GGG | + | chr1_3:13340117-13340136 | None:intergenic | 40.0% | |
| CAGGCGTTTAAATAGGCTAT+GGG | + | chr1_3:13340118-13340137 | None:intergenic | 40.0% | |
| AAGGGTCCTATAATTAGGGA+CGG | + | chr1_3:13340174-13340193 | None:intergenic | 40.0% | |
| GGTTATGTTGTGATGTGGGT+AGG | + | chr1_3:13331631-13331650 | None:intergenic | 45.0% | |
| GGTTGAGTTCGTAGAAATGG+AGG | + | chr1_3:13331725-13331744 | None:intergenic | 45.0% | |
| TCTCAGTTCATTCACCAGCA+TGG | + | chr1_3:13331838-13331857 | None:intergenic | 45.0% | |
| ATAGGCGACAGTTTCAAGAG+GGG | + | chr1_3:13331988-13332007 | None:intergenic | 45.0% | |
| CATAGGCGACAGTTTCAAGA+GGG | + | chr1_3:13331989-13332008 | None:intergenic | 45.0% | |
| TCATAGGCGACAGTTTCAAG+AGG | + | chr1_3:13331990-13332009 | None:intergenic | 45.0% | |
| TCTTGAAACTGTCGCCTATG+AGG | - | chr1_3:13331989-13332008 | Msa0105060:intron | 45.0% | |
| AAACTGTCGCCTATGAGGTT+CGG | - | chr1_3:13331994-13332013 | Msa0105060:intron | 45.0% | |
| ! | TTTCTGGTGCGTGTACTGTT+CGG | - | chr1_3:13332358-13332377 | Msa0105060:intron | 45.0% |
| ACCGTTCAATCTTGACCAAG+TGG | - | chr1_3:13333171-13333190 | Msa0105060:intron | 45.0% | |
| GCCACTTGGTCAAGATTGAA+CGG | + | chr1_3:13333175-13333194 | None:intergenic | 45.0% | |
| TTGGAATATCAGTGGCCACT+TGG | + | chr1_3:13333189-13333208 | None:intergenic | 45.0% | |
| TGCTAGGTCTTAGGTGTTAG+AGG | - | chr1_3:13333349-13333368 | Msa0105060:intron | 45.0% | |
| CAACTTTACCAATTGCGCCA+AGG | + | chr1_3:13333676-13333695 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr1_3:13333698-13333717 | Msa0105060:exon | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr1_3:13333699-13333718 | Msa0105060:exon | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_3:13333732-13333751 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_3:13333763-13333782 | Msa0105060:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_3:13333766-13333785 | Msa0105060:CDS | 45.0% | |
| AGATGAGAATGAGATGCCAC+TGG | - | chr1_3:13334482-13334501 | Msa0105060:intron | 45.0% | |
| ! | AGAATGAGATGCCACTGGTT+AGG | - | chr1_3:13334487-13334506 | Msa0105060:intron | 45.0% |
| !! | CTTTGATGATGTGCAACCAG+TGG | - | chr1_3:13334514-13334533 | Msa0105060:CDS | 45.0% |
| AATTGAATGCACAGGACCAC+TGG | + | chr1_3:13334533-13334552 | None:intergenic | 45.0% | |
| AGTGTTAAGGTCCTGTCCAA+GGG | + | chr1_3:13334624-13334643 | None:intergenic | 45.0% | |
| ! | GCTTAGGTTGTTGAAGGGTT+TGG | - | chr1_3:13334904-13334923 | Msa0105060:intron | 45.0% |
| !! | ATTGAAGCATTGGATGGCTC+CGG | - | chr1_3:13335036-13335055 | Msa0105060:intron | 45.0% |
| GTGATCAACACAACTCCAAG+TGG | + | chr1_3:13335123-13335142 | None:intergenic | 45.0% | |
| ! | GATTGACATCACTAGCTTGG+AGG | + | chr1_3:13335312-13335331 | None:intergenic | 45.0% |
| TGCGATTGACATCACTAGCT+TGG | + | chr1_3:13335315-13335334 | None:intergenic | 45.0% | |
| !! | CAGTTTTAGCAGCTCTATCG+CGG | + | chr1_3:13335476-13335495 | None:intergenic | 45.0% |
| GCTGCAATAGCTCCAATTAC+TGG | + | chr1_3:13335591-13335610 | None:intergenic | 45.0% | |
| GTAATTGGAGCTATTGCAGC+TGG | - | chr1_3:13335591-13335610 | Msa0105060:intron | 45.0% | |
| ! | TATTGCAGCTGGTAATGCTG+TGG | - | chr1_3:13335602-13335621 | Msa0105060:intron | 45.0% |
| GTGGCTGGAGAAATTTCTGA+TGG | + | chr1_3:13335636-13335655 | None:intergenic | 45.0% | |
| ! | TTTTGCCAGCAACGATGATG+TGG | + | chr1_3:13335655-13335674 | None:intergenic | 45.0% |
| TCGTTGCTGGCAAAACTGTT+AGG | - | chr1_3:13335660-13335679 | Msa0105060:intron | 45.0% | |
| CGTTGCTGGCAAAACTGTTA+GGG | - | chr1_3:13335661-13335680 | Msa0105060:intron | 45.0% | |
| GTTGCTGGCAAAACTGTTAG+GGG | - | chr1_3:13335662-13335681 | Msa0105060:intron | 45.0% | |
| ! | TTCTCTTTGTTTCTCCCCTC+TGG | - | chr1_3:13335782-13335801 | Msa0105060:CDS | 45.0% |
| ! | TTGCACTAGTTCTCGTCAAC+TGG | - | chr1_3:13335908-13335927 | Msa0105060:intron | 45.0% |
| ! | GCTTTGATCACAGAGTGTTC+AGG | - | chr1_3:13335938-13335957 | Msa0105060:intron | 45.0% |
| AAGAGTGGCACGCATTGTTA+TGG | - | chr1_3:13336067-13336086 | Msa0105060:intron | 45.0% | |
| ATTGCAAGGTGGCAACTAGA+AGG | - | chr1_3:13336395-13336414 | Msa0105060:intron | 45.0% | |
| GCAACTAGAAGGATAATCGC+TGG | - | chr1_3:13336406-13336425 | Msa0105060:intron | 45.0% | |
| GAAGGATAATCGCTGGAAAG+TGG | - | chr1_3:13336413-13336432 | Msa0105060:intron | 45.0% | |
| AGGATAATCGCTGGAAAGTG+GGG | - | chr1_3:13336415-13336434 | Msa0105060:intron | 45.0% | |
| ! | GTTTGGTTCCTCCTATTCCT+AGG | - | chr1_3:13336570-13336589 | Msa0105060:intron | 45.0% |
| AGAATCCACCTAGGAATAGG+AGG | + | chr1_3:13336581-13336600 | None:intergenic | 45.0% | |
| GCTTTATCAAGCGATCGAAG+TGG | + | chr1_3:13336681-13336700 | None:intergenic | 45.0% | |
| !!! | CTCGCTGTCTTCTTTTTTGG+AGG | - | chr1_3:13336770-13336789 | Msa0105060:intron | 45.0% |
| GGGACATCCAATAGAACAGT+AGG | + | chr1_3:13336883-13336902 | None:intergenic | 45.0% | |
| !! | ACCGTGATGATGGGAAGTAA+TGG | + | chr1_3:13336943-13336962 | None:intergenic | 45.0% |
| !! | GTTAAGACTGTTTCTGCTGG+TGG | - | chr1_3:13337340-13337359 | Msa0105060:intron | 45.0% |
| ! | AGTTGGTTCTCAGCAATTCC+TGG | - | chr1_3:13337508-13337527 | Msa0105060:intron | 45.0% |
| GATTGATGCAACTGTCGTGT+TGG | + | chr1_3:13337831-13337850 | None:intergenic | 45.0% | |
| !! | ACTTTGCCTTTTGGAGGAGT+AGG | - | chr1_3:13337972-13337991 | Msa0105060:intron | 45.0% |
| GAGATTGATGAAGGCTCTCA+TGG | - | chr1_3:13338124-13338143 | Msa0105060:intron | 45.0% | |
| AATTAGAGCATGCTAGCGGA+GGG | - | chr1_3:13338460-13338479 | Msa0105060:intron | 45.0% | |
| GTTCCATCGGTAGTCAACAA+TGG | - | chr1_3:13338717-13338736 | Msa0105060:intron | 45.0% | |
| ! | GAACCATTGTTGACTACCGA+TGG | + | chr1_3:13338723-13338742 | None:intergenic | 45.0% |
| ! | ATGAGTGGTGATGAAAGGGA+TGG | + | chr1_3:13338751-13338770 | None:intergenic | 45.0% |
| GTTAAATTAGAAGCCGGCAG+TGG | - | chr1_3:13338865-13338884 | Msa0105060:intron | 45.0% | |
| ACCCAAATTCATGAGCCTGA+TGG | - | chr1_3:13339067-13339086 | Msa0105060:intron | 45.0% | |
| AACCTCACAGTCTAACCATC+AGG | + | chr1_3:13339085-13339104 | None:intergenic | 45.0% | |
| GGAGGACATGTGTGACTATT+AGG | - | chr1_3:13339176-13339195 | Msa0105060:intron | 45.0% | |
| ! | CGTGACAGAGACTTGATTTG+TGG | + | chr1_3:13339935-13339954 | None:intergenic | 45.0% |
| AGCCATTGTGTTAGTGCTCT+TGG | - | chr1_3:13339989-13340008 | Msa0105060:CDS | 45.0% | |
| !! | AGCCAAGAGCACTAACACAA+TGG | + | chr1_3:13339994-13340013 | None:intergenic | 45.0% |
| TGTGTTAGTGCTCTTGGCTA+AGG | - | chr1_3:13339995-13340014 | Msa0105060:CDS | 45.0% | |
| CCAGGCGTTTAAATAGGCTA+TGG | + | chr1_3:13340119-13340138 | None:intergenic | 45.0% | |
| CCATAGCCTATTTAAACGCC+TGG | - | chr1_3:13340116-13340135 | Msa0105060:five_prime_UTR | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | - | chr1_3:13340165-13340184 | Msa0105060:five_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTAATTTTTC+TGG | - | chr1_3:13332342-13332361 | Msa0105060:intron | 5.0% |
| TGTTGTGATGTGGGTAGGGT+GGG | + | chr1_3:13331626-13331645 | None:intergenic | 50.0% | |
| ATGTTGTGATGTGGGTAGGG+TGG | + | chr1_3:13331627-13331646 | None:intergenic | 50.0% | |
| TAGGCGACAGTTTCAAGAGG+GGG | + | chr1_3:13331987-13332006 | None:intergenic | 50.0% | |
| TGGTGGAAACGTTGCAGTGT+GGG | - | chr1_3:13332381-13332400 | Msa0105060:intron | 50.0% | |
| GTGGGGAATCCACAACTACT+AGG | - | chr1_3:13333219-13333238 | Msa0105060:intron | 50.0% | |
| TGTTCGGTCATAGGTCTGAG+AGG | - | chr1_3:13333429-13333448 | Msa0105060:intron | 50.0% | |
| GCACTACTAAAAGGGCAACC+CGG | + | chr1_3:13333833-13333852 | None:intergenic | 50.0% | |
| GCAGTGACCCTCGTACTTAA+TGG | - | chr1_3:13334317-13334336 | Msa0105060:intron | 50.0% | |
| CCAGAGGCCATTAAGTACGA+GGG | + | chr1_3:13334327-13334346 | None:intergenic | 50.0% | |
| ACCAGAGGCCATTAAGTACG+AGG | + | chr1_3:13334328-13334347 | None:intergenic | 50.0% | |
| GAGTGTTAAGGTCCTGTCCA+AGG | + | chr1_3:13334625-13334644 | None:intergenic | 50.0% | |
| GGAAAGTGGGGTTGCAACAA+TGG | - | chr1_3:13336427-13336446 | Msa0105060:intron | 50.0% | |
| TGGTTCCTCCTATTCCTAGG+TGG | - | chr1_3:13336573-13336592 | Msa0105060:intron | 50.0% | |
| AACAGTAGGGCTAATCCTCC+TGG | + | chr1_3:13336869-13336888 | None:intergenic | 50.0% | |
| !! | GACTGTTTCTGCTGGTGGTT+TGG | - | chr1_3:13337345-13337364 | Msa0105060:intron | 50.0% |
| CTCTCACCTACTCCTCCAAA+AGG | + | chr1_3:13337981-13338000 | None:intergenic | 50.0% | |
| TTTGGAGGAGTAGGTGAGAG+TGG | - | chr1_3:13337981-13338000 | Msa0105060:intron | 50.0% | |
| TTGATGAAGGCTCTCATGGG+TGG | - | chr1_3:13338128-13338147 | Msa0105060:intron | 50.0% | |
| CAATTAGAGCATGCTAGCGG+AGG | - | chr1_3:13338459-13338478 | Msa0105060:intron | 50.0% | |
| TTAACGGCAGTTAGCTGTCG+TGG | + | chr1_3:13338850-13338869 | None:intergenic | 50.0% | |
| AACTGCCGCTGAAAGTCATC+CGG | - | chr1_3:13338890-13338909 | Msa0105060:intron | 50.0% | |
| CATCGGTAGTTAACTACCGC+CGG | + | chr1_3:13338912-13338931 | None:intergenic | 50.0% | |
| GGCGGTAGTTAACTACCGAT+GGG | - | chr1_3:13338911-13338930 | Msa0105060:intron | 50.0% | |
| GCGGTAGTTAACTACCGATG+GGG | - | chr1_3:13338912-13338931 | Msa0105060:intron | 50.0% | |
| AGCCTGATGGTTAGACTGTG+AGG | - | chr1_3:13339080-13339099 | Msa0105060:intron | 50.0% | |
| GGTCCTATAATTAGGGACGG+AGG | + | chr1_3:13340171-13340190 | None:intergenic | 50.0% | |
| CAATGAAGCGGGATCCATGC+TGG | - | chr1_3:13331821-13331840 | Msa0105060:three_prime_UTR | 55.0% | |
| ! | GTGGTGGAAACGTTGCAGTG+TGG | - | chr1_3:13332380-13332399 | Msa0105060:intron | 55.0% |
| AGGGGTAACCTTGGCGCAAT+TGG | - | chr1_3:13333665-13333684 | Msa0105060:three_prime_UTR | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_3:13333711-13333730 | Msa0105060:CDS | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr1_3:13333806-13333825 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr1_3:13333807-13333826 | None:intergenic | 55.0% | |
| CCCTCGTACTTAATGGCCTC+TGG | - | chr1_3:13334324-13334343 | Msa0105060:intron | 55.0% | |
| GCATTGGATGGCTCCGGAAA+AGG | - | chr1_3:13335042-13335061 | Msa0105060:intron | 55.0% | |
| TCCAGCCACATCATCGTTGC+TGG | - | chr1_3:13335647-13335666 | Msa0105060:intron | 55.0% | |
| GCACCTTACACCAGTTGTGC+TGG | - | chr1_3:13336103-13336122 | Msa0105060:intron | 55.0% | |
| GCTCCAGCACAACTGGTGTA+AGG | + | chr1_3:13336109-13336128 | None:intergenic | 55.0% | |
| ACACCAGTTGTGCTGGAGCT+TGG | - | chr1_3:13336110-13336129 | Msa0105060:intron | 55.0% | |
| AGGAGTAGGTGAGAGTGGAG+TGG | - | chr1_3:13337986-13338005 | Msa0105060:intron | 55.0% | |
| GGAGTAGGTGAGAGTGGAGT+GGG | - | chr1_3:13337987-13338006 | Msa0105060:intron | 55.0% | |
| AGTGGAGTGGGTGCATACCA+TGG | - | chr1_3:13337999-13338018 | Msa0105060:intron | 55.0% | |
| ATGAAGGCTCTCATGGGTGG+TGG | - | chr1_3:13338131-13338150 | Msa0105060:intron | 55.0% | |
| TACCGCCGGATGACTTTCAG+CGG | + | chr1_3:13338898-13338917 | None:intergenic | 55.0% | |
| CGGCGGTAGTTAACTACCGA+TGG | - | chr1_3:13338910-13338929 | Msa0105060:intron | 55.0% | |
| ! | GGTGATGAGGGTGGTACTGG+TGG | + | chr1_3:13331605-13331624 | None:intergenic | 60.0% |
| GTGGGTGATGAGGGTGGTAC+TGG | + | chr1_3:13331608-13331627 | None:intergenic | 60.0% | |
| GTGGGTAGGGTGGGTGATGA+GGG | + | chr1_3:13331617-13331636 | None:intergenic | 60.0% | |
| TGTGGGTAGGGTGGGTGATG+AGG | + | chr1_3:13331618-13331637 | None:intergenic | 60.0% | |
| CTGGTGCGTGTACTGTTCGG+TGG | - | chr1_3:13332361-13332380 | Msa0105060:intron | 60.0% | |
| ! | GTGCGTGTACTGTTCGGTGG+TGG | - | chr1_3:13332364-13332383 | Msa0105060:intron | 60.0% |
| GTGCACGTGAGGGGTAACCT+TGG | - | chr1_3:13333656-13333675 | Msa0105060:three_prime_UTR | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_3:13333779-13333798 | Msa0105060:CDS | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr1_3:13333794-13333813 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr1_3:13333795-13333814 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr1_3:13333794-13333813 | Msa0105060:CDS | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr1_3:13333795-13333814 | Msa0105060:CDS | 60.0% | |
| AGCGGCTATAGCAGCGCTCT+AGG | + | chr1_3:13335386-13335405 | None:intergenic | 60.0% | |
| GCCAGCAACGATGATGTGGC+TGG | + | chr1_3:13335651-13335670 | None:intergenic | 60.0% | |
| CCTCCAAGCTCCAGCACAAC+TGG | + | chr1_3:13336116-13336135 | None:intergenic | 60.0% | |
| CCAGTTGTGCTGGAGCTTGG+AGG | - | chr1_3:13336113-13336132 | Msa0105060:intron | 60.0% | |
| CAGCGGCAGTTAACCACTGC+CGG | + | chr1_3:13338881-13338900 | None:intergenic | 60.0% | |
| TGCCGCTGAAAGTCATCCGG+CGG | - | chr1_3:13338893-13338912 | Msa0105060:intron | 60.0% | |
| GGTAGGGTGGGTGATGAGGG+TGG | + | chr1_3:13331614-13331633 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_3:13333781-13333800 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr1_3:13333796-13333815 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr1_3:13333800-13333819 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr1_3:13333801-13333820 | None:intergenic | 65.0% | |
| ! | ATGCGGGAGCTCTAGTGCGC+CGG | - | chr1_3:13333811-13333830 | Msa0105060:CDS | 65.0% |
| ! | TGCGGGAGCTCTAGTGCGCC+GGG | - | chr1_3:13333812-13333831 | Msa0105060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 13331601 | 13340293 | 13331601 | ID=Msa0105060;Name=Msa0105060 |
| chr1_3 | mRNA | 13331601 | 13340293 | 13331601 | ID=Msa0105060-mRNA-1;Parent=Msa0105060;Name=Msa0105060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=147|1|1|1|0.75|0.61|13|396|488 |
| chr1_3 | exon | 13331601 | 13331624 | 13331601 | ID=Msa0105060-mRNA-1:exon:5273;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13331722 | 13331968 | 13331722 | ID=Msa0105060-mRNA-1:exon:5272;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13333576 | 13333934 | 13333576 | ID=Msa0105060-mRNA-1:exon:5271;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13334504 | 13334653 | 13334504 | ID=Msa0105060-mRNA-1:exon:5270;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13334934 | 13335024 | 13334934 | ID=Msa0105060-mRNA-1:exon:5269;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13335130 | 13335302 | 13335130 | ID=Msa0105060-mRNA-1:exon:5268;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13335387 | 13335491 | 13335387 | ID=Msa0105060-mRNA-1:exon:5267;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13335719 | 13335834 | 13335719 | ID=Msa0105060-mRNA-1:exon:5266;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13336114 | 13336320 | 13336114 | ID=Msa0105060-mRNA-1:exon:5265;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13336634 | 13336730 | 13336634 | ID=Msa0105060-mRNA-1:exon:5264;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13336831 | 13336899 | 13336831 | ID=Msa0105060-mRNA-1:exon:5263;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13339884 | 13340219 | 13339884 | ID=Msa0105060-mRNA-1:exon:5262;Parent=Msa0105060-mRNA-1 |
| chr1_3 | exon | 13340258 | 13340293 | 13340258 | ID=Msa0105060-mRNA-1:exon:5261;Parent=Msa0105060-mRNA-1 |
| chr1_3 | five_prime_UTR | 13340258 | 13340293 | 13340258 | ID=Msa0105060-mRNA-1:five_prime_utr;Parent=Msa0105060-mRNA-1 |
| chr1_3 | five_prime_UTR | 13340109 | 13340219 | 13340109 | ID=Msa0105060-mRNA-1:five_prime_utr;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13339884 | 13340108 | 13339884 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13336831 | 13336899 | 13336831 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13336634 | 13336730 | 13336634 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13336114 | 13336320 | 13336114 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13335719 | 13335834 | 13335719 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13335387 | 13335491 | 13335387 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13335130 | 13335302 | 13335130 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13334934 | 13335024 | 13334934 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13334504 | 13334653 | 13334504 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | CDS | 13333701 | 13333934 | 13333701 | ID=Msa0105060-mRNA-1:cds;Parent=Msa0105060-mRNA-1 |
| chr1_3 | three_prime_UTR | 13333576 | 13333700 | 13333576 | ID=Msa0105060-mRNA-1:three_prime_utr;Parent=Msa0105060-mRNA-1 |
| chr1_3 | three_prime_UTR | 13331722 | 13331968 | 13331722 | ID=Msa0105060-mRNA-1:three_prime_utr;Parent=Msa0105060-mRNA-1 |
| chr1_3 | three_prime_UTR | 13331601 | 13331624 | 13331601 | ID=Msa0105060-mRNA-1:three_prime_utr;Parent=Msa0105060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
