AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685460 MtrunA17_Chr4g0033761 100.000 69 0 0 1 69 1 69 2.71e-45 139
Msa0685460 MtrunA17_Chr2g0285451 94.203 69 4 0 1 69 1 69 3.14e-42 131
Msa0685460 MtrunA17_Chr8g0376751 94.203 69 4 0 1 69 1 69 3.74e-42 131
Msa0685460 MtrunA17_Chr7g0216191 91.304 69 6 0 1 69 1 69 1.58e-38 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685460 AT2G43460.1 92.754 69 5 0 1 69 1 69 2.34e-42 132
Msa0685460 AT3G59540.1 92.754 69 5 0 1 69 1 69 2.34e-42 132

Find 36 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTATATTGAAGTCTTTC+CGG 0.185075 4_4:+49603334 Msa0685460:three_prime_UTR
AGCGTGCCGATTGTAATATT+TGG 0.201571 4_4:+49601171 Msa0685460:five_prime_UTR
TCTAATTGATTATATAAATA+AGG 0.213408 4_4:-49603305 None:intergenic
CTAAGTCAATAGAGGTTAAT+TGG 0.262257 4_4:+49603381 Msa0685460:three_prime_UTR
GCGTGCCGATTGTAATATTT+GGG 0.285896 4_4:+49601172 Msa0685460:five_prime_UTR
TAAGCAAATCAATGAGATTA+AGG 0.290766 4_4:+49602468 Msa0685460:CDS
TTTGCTTCTCTTGATCTTCA+CGG 0.377542 4_4:-49602527 None:intergenic
CAAAGATGTTGTCAAGTTCA+AGG 0.412153 4_4:+49602546 Msa0685460:CDS
AAACTAAACTCTTGGTAAAC+CGG 0.412567 4_4:+49601044 Msa0685460:five_prime_UTR
CTAATTGATTATATAAATAA+GGG 0.434933 4_4:-49603304 None:intergenic
TGTAATATTTGGGGAGGAAG+AGG 0.445922 4_4:+49601182 Msa0685460:five_prime_UTR
AGACTTCAATATAAGATAAG+AGG 0.449457 4_4:-49603328 None:intergenic
TCACTCAGTACACATTTAAC+CGG 0.452174 4_4:-49603151 None:intergenic
GTGAAGATCAAGTGTTGCTT+TGG 0.469681 4_4:+49603170 Msa0685460:three_prime_UTR
GCAAGACTTGTAATTCTATC+CGG 0.485897 4_4:+49603132 Msa0685460:exon
TCCTCCCCAAATATTACAAT+CGG 0.489389 4_4:-49601177 None:intergenic
ACAAAGTGTGTACAAGTACT+TGG 0.506752 4_4:-49602578 None:intergenic
CTTGGTAAACCGGCTCAATA+CGG 0.530257 4_4:+49601054 Msa0685460:five_prime_UTR
TTAATCTCATTGATTTGCTT+AGG 0.531275 4_4:-49602466 None:intergenic
AGTTACACAAACTAAACTCT+TGG 0.532487 4_4:+49601036 None:intergenic
CTTACGACTCTCATTATGAA+TGG 0.536568 4_4:+49603246 Msa0685460:three_prime_UTR
ATTACAATCGGCACGCTCGA+AGG 0.536948 4_4:-49601165 None:intergenic
GTCAATAGAGGTTAATTGGA+TGG 0.539702 4_4:+49603385 Msa0685460:three_prime_UTR
TACTGACAAGAAAATAGAGT+TGG 0.557694 4_4:-49603270 None:intergenic
AGGACTTCCTCCTCACTGCT+AGG 0.557805 4_4:+49602488 Msa0685460:CDS
TCATAATGAGAGTCGTAAGC+TGG 0.559002 4_4:-49603242 None:intergenic
CCTCCTCACTGCTAGGAGGA+AGG 0.566472 4_4:+49602495 Msa0685460:CDS
AACCCTATATTATGAAAAGA+CGG 0.590448 4_4:-49601110 None:intergenic
GCCGATTGTAATATTTGGGG+AGG 0.594026 4_4:+49601176 Msa0685460:five_prime_UTR
CGTGCCGATTGTAATATTTG+GGG 0.609894 4_4:+49601173 Msa0685460:five_prime_UTR
GTAAACCGGCTCAATACGGA+AGG 0.620485 4_4:+49601058 Msa0685460:five_prime_UTR
CCTTCCTCCTAGCAGTGAGG+AGG 0.657731 4_4:-49602495 None:intergenic
TACTATCCTTATCCCAACGC+GGG 0.658000 4_4:-49601087 None:intergenic
ACTTCCTCCTCACTGCTAGG+AGG 0.666318 4_4:+49602491 Msa0685460:CDS
CATCCTTCCTCCTAGCAGTG+AGG 0.669946 4_4:-49602498 None:intergenic
GTACTATCCTTATCCCAACG+CGG 0.784388 4_4:-49601088 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATATTTTTTTTTATT+TGG + chr4_4:49602367-49602386 Msa0685460:intron 0.0%
!!! TTATTATATTTTTTTTTATT+TGG + chr4_4:49602367-49602386 Msa0685460:intron 0.0%
!!! AATTTTTTTTACTCAATTTT+AGG + chr4_4:49601393-49601412 Msa0685460:intron 10.0%
!!! ATTTTTTTTACTCAATTTTA+GGG + chr4_4:49601394-49601413 Msa0685460:intron 10.0%
!!! TATTTTTTTTTATTTGGATT+TGG + chr4_4:49602373-49602392 Msa0685460:intron 10.0%
!! CTAATTGATTATATAAATAA+GGG - chr4_4:49603307-49603326 None:intergenic 10.0%
!! TCTAATTGATTATATAAATA+AGG - chr4_4:49603308-49603327 None:intergenic 10.0%
!!! AATTTTTTTTACTCAATTTT+AGG + chr4_4:49601393-49601412 Msa0685460:intron 10.0%
!!! ATTTTTTTTACTCAATTTTA+GGG + chr4_4:49601394-49601413 Msa0685460:intron 10.0%
!!! TATTTTTTTTTATTTGGATT+TGG + chr4_4:49602373-49602392 Msa0685460:intron 10.0%
!! CTAATTGATTATATAAATAA+GGG - chr4_4:49603307-49603326 None:intergenic 10.0%
!! TCTAATTGATTATATAAATA+AGG - chr4_4:49603308-49603327 None:intergenic 10.0%
!! ATTGAGTAAAAAAAATTCAT+AGG - chr4_4:49601390-49601409 None:intergenic 15.0%
!!! GTGTAATAATTCTTTAAAAA+TGG + chr4_4:49602798-49602817 Msa0685460:intron 15.0%
!! TCTATAAAGTAAATAATAAG+AGG + chr4_4:49602823-49602842 Msa0685460:intron 15.0%
!! ATTGAGTAAAAAAAATTCAT+AGG - chr4_4:49601390-49601409 None:intergenic 15.0%
!!! GTGTAATAATTCTTTAAAAA+TGG + chr4_4:49602798-49602817 Msa0685460:intron 15.0%
!! TCTATAAAGTAAATAATAAG+AGG + chr4_4:49602823-49602842 Msa0685460:intron 15.0%
!!! TCAATTCACAATTTTTTTGT+AGG + chr4_4:49601280-49601299 Msa0685460:intron 20.0%
!!! ACAATTTTTTTGTAGGAAAT+TGG + chr4_4:49601287-49601306 Msa0685460:intron 20.0%
!! AAAACATTGAAAATCAAGAT+AGG - chr4_4:49601330-49601349 None:intergenic 20.0%
!! ATTATACATTGATCTGAATT+AGG + chr4_4:49601455-49601474 Msa0685460:intron 20.0%
!! TTATACATTGATCTGAATTA+GGG + chr4_4:49601456-49601475 Msa0685460:intron 20.0%
!! AACAAAAAGGAACAAAAATT+TGG + chr4_4:49601721-49601740 Msa0685460:intron 20.0%
!!! TTTAGCCTTTTGATTATTTA+CGG - chr4_4:49601767-49601786 None:intergenic 20.0%
!! AAAAGGCTAAATTAATTCAA+TGG + chr4_4:49601776-49601795 Msa0685460:intron 20.0%
!!! TTGATGATTTTAAGACTTAT+GGG - chr4_4:49601834-49601853 None:intergenic 20.0%
!!! ATTGATGATTTTAAGACTTA+TGG - chr4_4:49601835-49601854 None:intergenic 20.0%
!! AAGTCTTAAAATCATCAATT+TGG + chr4_4:49601836-49601855 Msa0685460:intron 20.0%
!!! ATCAAATATAATTTAGCTTC+AGG - chr4_4:49601945-49601964 None:intergenic 20.0%
!! TGAAGCTAAATTATATTTGA+TGG + chr4_4:49601944-49601963 Msa0685460:intron 20.0%
!!! TTTTTATTTGGATTTGGATT+TGG + chr4_4:49602379-49602398 Msa0685460:intron 20.0%
!! ACATTTCAATAAACACAAAA+AGG - chr4_4:49602444-49602463 None:intergenic 20.0%
!! AAAGAATTATTACACCTTTA+AGG - chr4_4:49602793-49602812 None:intergenic 20.0%
!! TGAGATTTATGAATAAGAAA+TGG - chr4_4:49602896-49602915 None:intergenic 20.0%
!! TCAGATTTATGAATATGAAA+TGG - chr4_4:49602991-49603010 None:intergenic 20.0%
!!! TGTTATTTTTCTCTTATTCT+AGG + chr4_4:49603019-49603038 Msa0685460:intron 20.0%
!! ACTACAAGACAAAAATATAT+TGG - chr4_4:49603208-49603227 None:intergenic 20.0%
!! AAACATATTCAAAAAACAAC+CGG - chr4_4:49603356-49603375 None:intergenic 20.0%
!!! TCAATTCACAATTTTTTTGT+AGG + chr4_4:49601280-49601299 Msa0685460:intron 20.0%
!!! ACAATTTTTTTGTAGGAAAT+TGG + chr4_4:49601287-49601306 Msa0685460:intron 20.0%
!! AAAACATTGAAAATCAAGAT+AGG - chr4_4:49601330-49601349 None:intergenic 20.0%
!! ATTATACATTGATCTGAATT+AGG + chr4_4:49601455-49601474 Msa0685460:intron 20.0%
!! TTATACATTGATCTGAATTA+GGG + chr4_4:49601456-49601475 Msa0685460:intron 20.0%
!! AACAAAAAGGAACAAAAATT+TGG + chr4_4:49601721-49601740 Msa0685460:intron 20.0%
!!! TTTAGCCTTTTGATTATTTA+CGG - chr4_4:49601767-49601786 None:intergenic 20.0%
!! AAAAGGCTAAATTAATTCAA+TGG + chr4_4:49601776-49601795 Msa0685460:intron 20.0%
!!! TTGATGATTTTAAGACTTAT+GGG - chr4_4:49601834-49601853 None:intergenic 20.0%
!!! ATTGATGATTTTAAGACTTA+TGG - chr4_4:49601835-49601854 None:intergenic 20.0%
!! AAGTCTTAAAATCATCAATT+TGG + chr4_4:49601836-49601855 Msa0685460:intron 20.0%
!!! ATCAAATATAATTTAGCTTC+AGG - chr4_4:49601945-49601964 None:intergenic 20.0%
!! TGAAGCTAAATTATATTTGA+TGG + chr4_4:49601944-49601963 Msa0685460:intron 20.0%
!!! TTTTTATTTGGATTTGGATT+TGG + chr4_4:49602379-49602398 Msa0685460:intron 20.0%
!! ACATTTCAATAAACACAAAA+AGG - chr4_4:49602444-49602463 None:intergenic 20.0%
!! AAAGAATTATTACACCTTTA+AGG - chr4_4:49602793-49602812 None:intergenic 20.0%
!! TGAGATTTATGAATAAGAAA+TGG - chr4_4:49602896-49602915 None:intergenic 20.0%
!! TCAGATTTATGAATATGAAA+TGG - chr4_4:49602991-49603010 None:intergenic 20.0%
!!! TGTTATTTTTCTCTTATTCT+AGG + chr4_4:49603019-49603038 Msa0685460:intron 20.0%
!! ACTACAAGACAAAAATATAT+TGG - chr4_4:49603208-49603227 None:intergenic 20.0%
!! AAACATATTCAAAAAACAAC+CGG - chr4_4:49603356-49603375 None:intergenic 20.0%
!! TACCGTCTTTTCATAATATA+GGG + chr4_4:49601108-49601127 Msa0685460:five_prime_UTR 25.0%
! AACCCTATATTATGAAAAGA+CGG - chr4_4:49601113-49601132 None:intergenic 25.0%
! AACAAGTGAAATTGAATCAA+TGG + chr4_4:49601424-49601443 Msa0685460:intron 25.0%
!!! TGGTTTTTGATTTTCAAACT+TGG + chr4_4:49601485-49601504 Msa0685460:intron 25.0%
! NNNNNNNNNNTTACCACTCG+CGG + chr4_4:49601694-49601713 Msa0685460:intron 25.0%
!!! AAAAATTTGGTGTCGTATAT+AGG + chr4_4:49601734-49601753 Msa0685460:intron 25.0%
! TTATATCCTTGCATCATAAT+TGG - chr4_4:49602020-49602039 None:intergenic 25.0%
! TATGATGCAAGGATATAAAA+AGG + chr4_4:49602022-49602041 Msa0685460:intron 25.0%
!!! TTAATCTCATTGATTTGCTT+AGG - chr4_4:49602469-49602488 None:intergenic 25.0%
! TAAGCAAATCAATGAGATTA+AGG + chr4_4:49602468-49602487 Msa0685460:CDS 25.0%
! TAATTCTCAAAAACTAACCT+GGG - chr4_4:49602648-49602667 None:intergenic 25.0%
! ATAATTCTCAAAAACTAACC+TGG - chr4_4:49602649-49602668 None:intergenic 25.0%
!!! TAGTTTTTGAGAATTATCGT+TGG + chr4_4:49602652-49602671 Msa0685460:intron 25.0%
! CAACAGAAATAAACAATCTA+TGG - chr4_4:49602753-49602772 None:intergenic 25.0%
!!! CATAGATTGTTTATTTCTGT+TGG + chr4_4:49602751-49602770 Msa0685460:intron 25.0%
!!! TTATTTCTGTTGGTTGTTAT+AGG + chr4_4:49602761-49602780 Msa0685460:intron 25.0%
! ATAATAAGAGGATTGTGTAA+TGG + chr4_4:49602835-49602854 Msa0685460:intron 25.0%
! TCTTATTCATAAATCTCAAC+TGG + chr4_4:49602898-49602917 Msa0685460:intron 25.0%
! CTTATTCATAAATCTCAACT+GGG + chr4_4:49602899-49602918 Msa0685460:intron 25.0%
! TTATGAATATGAAATGGAAG+AGG - chr4_4:49602985-49603004 None:intergenic 25.0%
!! AGATGTAGAAATTTGAGTTT+AGG + chr4_4:49603065-49603084 Msa0685460:intron 25.0%
! AGACTTCAATATAAGATAAG+AGG - chr4_4:49603331-49603350 None:intergenic 25.0%
! ATCTTATATTGAAGTCTTTC+CGG + chr4_4:49603334-49603353 Msa0685460:three_prime_UTR 25.0%
!! TCAATCAGTAGAAAGTTTTT+AGG + chr4_4:49603424-49603443 Msa0685460:three_prime_UTR 25.0%
!! TACCGTCTTTTCATAATATA+GGG + chr4_4:49601108-49601127 Msa0685460:five_prime_UTR 25.0%
! AACCCTATATTATGAAAAGA+CGG - chr4_4:49601113-49601132 None:intergenic 25.0%
! AACAAGTGAAATTGAATCAA+TGG + chr4_4:49601424-49601443 Msa0685460:intron 25.0%
!!! TGGTTTTTGATTTTCAAACT+TGG + chr4_4:49601485-49601504 Msa0685460:intron 25.0%
! NNNNNNNNNNTTACCACTCG+CGG + chr4_4:49601694-49601713 Msa0685460:intron 25.0%
!!! AAAAATTTGGTGTCGTATAT+AGG + chr4_4:49601734-49601753 Msa0685460:intron 25.0%
! TTATATCCTTGCATCATAAT+TGG - chr4_4:49602020-49602039 None:intergenic 25.0%
! TATGATGCAAGGATATAAAA+AGG + chr4_4:49602022-49602041 Msa0685460:intron 25.0%
!!! TTAATCTCATTGATTTGCTT+AGG - chr4_4:49602469-49602488 None:intergenic 25.0%
! TAAGCAAATCAATGAGATTA+AGG + chr4_4:49602468-49602487 Msa0685460:CDS 25.0%
! TAATTCTCAAAAACTAACCT+GGG - chr4_4:49602648-49602667 None:intergenic 25.0%
! ATAATTCTCAAAAACTAACC+TGG - chr4_4:49602649-49602668 None:intergenic 25.0%
!!! TAGTTTTTGAGAATTATCGT+TGG + chr4_4:49602652-49602671 Msa0685460:intron 25.0%
! CAACAGAAATAAACAATCTA+TGG - chr4_4:49602753-49602772 None:intergenic 25.0%
!!! CATAGATTGTTTATTTCTGT+TGG + chr4_4:49602751-49602770 Msa0685460:intron 25.0%
!!! TTATTTCTGTTGGTTGTTAT+AGG + chr4_4:49602761-49602780 Msa0685460:intron 25.0%
! ATAATAAGAGGATTGTGTAA+TGG + chr4_4:49602835-49602854 Msa0685460:intron 25.0%
! TCTTATTCATAAATCTCAAC+TGG + chr4_4:49602898-49602917 Msa0685460:intron 25.0%
! CTTATTCATAAATCTCAACT+GGG + chr4_4:49602899-49602918 Msa0685460:intron 25.0%
! TTATGAATATGAAATGGAAG+AGG - chr4_4:49602985-49603004 None:intergenic 25.0%
!! AGATGTAGAAATTTGAGTTT+AGG + chr4_4:49603065-49603084 Msa0685460:intron 25.0%
! AGACTTCAATATAAGATAAG+AGG - chr4_4:49603331-49603350 None:intergenic 25.0%
! ATCTTATATTGAAGTCTTTC+CGG + chr4_4:49603334-49603353 Msa0685460:three_prime_UTR 25.0%
!! TCAATCAGTAGAAAGTTTTT+AGG + chr4_4:49603424-49603443 Msa0685460:three_prime_UTR 25.0%
AAACTAAACTCTTGGTAAAC+CGG + chr4_4:49601044-49601063 Msa0685460:five_prime_UTR 30.0%
! GTACCGTCTTTTCATAATAT+AGG + chr4_4:49601107-49601126 Msa0685460:five_prime_UTR 30.0%
! TCGAAGGTTTGAGAATTTTA+GGG - chr4_4:49601152-49601171 None:intergenic 30.0%
GATCTGAATTAGGGAATTTA+TGG + chr4_4:49601465-49601484 Msa0685460:intron 30.0%
!! ATTTTCAAACTTGGTAGTCA+GGG + chr4_4:49601494-49601513 Msa0685460:intron 30.0%
ATCCAGAATTTAGATACATG+TGG + chr4_4:49601521-49601540 Msa0685460:intron 30.0%
GAACACCGTAAATAATCAAA+AGG + chr4_4:49601759-49601778 Msa0685460:intron 30.0%
GAAAACTGGAAATTAGTTGA+GGG - chr4_4:49601803-49601822 None:intergenic 30.0%
TGAAAACTGGAAATTAGTTG+AGG - chr4_4:49601804-49601823 None:intergenic 30.0%
TATGGGACTAAAATGAAAAC+TGG - chr4_4:49601817-49601836 None:intergenic 30.0%
! TTTTGCTCCGTTATTCAATT+TGG + chr4_4:49601868-49601887 Msa0685460:intron 30.0%
TAAAACAAAAGCTTAACAGC+TGG + chr4_4:49602058-49602077 Msa0685460:intron 30.0%
!!! TGCATGGTTTTAGTTTCTAA+AGG - chr4_4:49602085-49602104 None:intergenic 30.0%
AATTCTCAAAAACTAACCTG+GGG - chr4_4:49602647-49602666 None:intergenic 30.0%
! TTATCGTTGGTTGTATGTTA+TGG + chr4_4:49602665-49602684 Msa0685460:intron 30.0%
TGTAATGGCCAAATAGATAT+GGG + chr4_4:49602850-49602869 Msa0685460:intron 30.0%
ATATTCTCCCCATATCTATT+TGG - chr4_4:49602861-49602880 None:intergenic 30.0%
TTATGAATAAGAAATGGCAG+AGG - chr4_4:49602890-49602909 None:intergenic 30.0%
TTGGGAACAACTTATGATAT+GGG + chr4_4:49602945-49602964 Msa0685460:intron 30.0%
TCATATTCATAAATCTGAGC+TGG + chr4_4:49602993-49603012 Msa0685460:intron 30.0%
AGTGAAACGTAAATGTAAGT+AGG - chr4_4:49603095-49603114 None:intergenic 30.0%
TACTGACAAGAAAATAGAGT+TGG - chr4_4:49603273-49603292 None:intergenic 30.0%
!! TTTTTGAGCTAAGTCAATAG+AGG + chr4_4:49603373-49603392 Msa0685460:three_prime_UTR 30.0%
CTAAGTCAATAGAGGTTAAT+TGG + chr4_4:49603381-49603400 Msa0685460:three_prime_UTR 30.0%
AAACTAAACTCTTGGTAAAC+CGG + chr4_4:49601044-49601063 Msa0685460:five_prime_UTR 30.0%
! GTACCGTCTTTTCATAATAT+AGG + chr4_4:49601107-49601126 Msa0685460:five_prime_UTR 30.0%
! TCGAAGGTTTGAGAATTTTA+GGG - chr4_4:49601152-49601171 None:intergenic 30.0%
GATCTGAATTAGGGAATTTA+TGG + chr4_4:49601465-49601484 Msa0685460:intron 30.0%
!! ATTTTCAAACTTGGTAGTCA+GGG + chr4_4:49601494-49601513 Msa0685460:intron 30.0%
ATCCAGAATTTAGATACATG+TGG + chr4_4:49601521-49601540 Msa0685460:intron 30.0%
GAACACCGTAAATAATCAAA+AGG + chr4_4:49601759-49601778 Msa0685460:intron 30.0%
GAAAACTGGAAATTAGTTGA+GGG - chr4_4:49601803-49601822 None:intergenic 30.0%
TGAAAACTGGAAATTAGTTG+AGG - chr4_4:49601804-49601823 None:intergenic 30.0%
TATGGGACTAAAATGAAAAC+TGG - chr4_4:49601817-49601836 None:intergenic 30.0%
! TTTTGCTCCGTTATTCAATT+TGG + chr4_4:49601868-49601887 Msa0685460:intron 30.0%
TAAAACAAAAGCTTAACAGC+TGG + chr4_4:49602058-49602077 Msa0685460:intron 30.0%
!!! TGCATGGTTTTAGTTTCTAA+AGG - chr4_4:49602085-49602104 None:intergenic 30.0%
AATTCTCAAAAACTAACCTG+GGG - chr4_4:49602647-49602666 None:intergenic 30.0%
! TTATCGTTGGTTGTATGTTA+TGG + chr4_4:49602665-49602684 Msa0685460:intron 30.0%
TGTAATGGCCAAATAGATAT+GGG + chr4_4:49602850-49602869 Msa0685460:intron 30.0%
ATATTCTCCCCATATCTATT+TGG - chr4_4:49602861-49602880 None:intergenic 30.0%
TTATGAATAAGAAATGGCAG+AGG - chr4_4:49602890-49602909 None:intergenic 30.0%
TTGGGAACAACTTATGATAT+GGG + chr4_4:49602945-49602964 Msa0685460:intron 30.0%
TCATATTCATAAATCTGAGC+TGG + chr4_4:49602993-49603012 Msa0685460:intron 30.0%
AGTGAAACGTAAATGTAAGT+AGG - chr4_4:49603095-49603114 None:intergenic 30.0%
TACTGACAAGAAAATAGAGT+TGG - chr4_4:49603273-49603292 None:intergenic 30.0%
!! TTTTTGAGCTAAGTCAATAG+AGG + chr4_4:49603373-49603392 Msa0685460:three_prime_UTR 30.0%
CTAAGTCAATAGAGGTTAAT+TGG + chr4_4:49603381-49603400 Msa0685460:three_prime_UTR 30.0%
! CTCGAAGGTTTGAGAATTTT+AGG - chr4_4:49601153-49601172 None:intergenic 35.0%
TCCTCCCCAAATATTACAAT+CGG - chr4_4:49601180-49601199 None:intergenic 35.0%
GAAACACTGCAAAGAATCAA+TGG - chr4_4:49601248-49601267 None:intergenic 35.0%
!! GATTTTCAAACTTGGTAGTC+AGG + chr4_4:49601493-49601512 Msa0685460:intron 35.0%
!! TTTTCAAACTTGGTAGTCAG+GGG + chr4_4:49601495-49601514 Msa0685460:intron 35.0%
CTCCACATGTATCTAAATTC+TGG - chr4_4:49601526-49601545 None:intergenic 35.0%
!! AATTTGGTGTCGTATATAGG+CGG + chr4_4:49601737-49601756 Msa0685460:intron 35.0%
! AATAACGGAGCAAAAGTTGA+GGG - chr4_4:49601863-49601882 None:intergenic 35.0%
! ATTTAGCTTCAGGTCTAGTT+GGG - chr4_4:49601935-49601954 None:intergenic 35.0%
! AATTTAGCTTCAGGTCTAGT+TGG - chr4_4:49601936-49601955 None:intergenic 35.0%
TCCTTGCATCATAATTGGTT+GGG - chr4_4:49602015-49602034 None:intergenic 35.0%
ATCCTTGCATCATAATTGGT+TGG - chr4_4:49602016-49602035 None:intergenic 35.0%
! ATGCATGGTTAAGCTTTTGT+GGG - chr4_4:49602110-49602129 None:intergenic 35.0%
CTGTTGCTACACTAATATGT+GGG - chr4_4:49602224-49602243 None:intergenic 35.0%
! TTTTCCCCATAATGATGGTT+CGG - chr4_4:49602260-49602279 None:intergenic 35.0%
CTGTGTTGTGATTTGAAAGA+TGG + chr4_4:49602406-49602425 Msa0685460:intron 35.0%
TTTGCTTCTCTTGATCTTCA+CGG - chr4_4:49602530-49602549 None:intergenic 35.0%
CAAAGATGTTGTCAAGTTCA+AGG + chr4_4:49602546-49602565 Msa0685460:CDS 35.0%
ACAAAGTGTGTACAAGTACT+TGG - chr4_4:49602581-49602600 None:intergenic 35.0%
ATTCTCAAAAACTAACCTGG+GGG - chr4_4:49602646-49602665 None:intergenic 35.0%
! TTCTGTTGGTTGTTATAGGT+CGG + chr4_4:49602765-49602784 Msa0685460:intron 35.0%
GTGTAATGGCCAAATAGATA+TGG + chr4_4:49602849-49602868 Msa0685460:intron 35.0%
GTAATGGCCAAATAGATATG+GGG + chr4_4:49602851-49602870 Msa0685460:intron 35.0%
!!! TGCTATTTTTCTCTCTCAGT+TGG + chr4_4:49602926-49602945 Msa0685460:intron 35.0%
!!! GCTATTTTTCTCTCTCAGTT+GGG + chr4_4:49602927-49602946 Msa0685460:intron 35.0%
GTTGGGAACAACTTATGATA+TGG + chr4_4:49602944-49602963 Msa0685460:intron 35.0%
TGGGAACAACTTATGATATG+GGG + chr4_4:49602946-49602965 Msa0685460:intron 35.0%
!! CATTTACGTTTCACTTTTGC+AGG + chr4_4:49603100-49603119 Msa0685460:intron 35.0%
GCAAGACTTGTAATTCTATC+CGG + chr4_4:49603132-49603151 Msa0685460:exon 35.0%
TCACTCAGTACACATTTAAC+CGG - chr4_4:49603154-49603173 None:intergenic 35.0%
CTTACGACTCTCATTATGAA+TGG + chr4_4:49603246-49603265 Msa0685460:three_prime_UTR 35.0%
GTCAATAGAGGTTAATTGGA+TGG + chr4_4:49603385-49603404 Msa0685460:three_prime_UTR 35.0%
! CTCGAAGGTTTGAGAATTTT+AGG - chr4_4:49601153-49601172 None:intergenic 35.0%
TCCTCCCCAAATATTACAAT+CGG - chr4_4:49601180-49601199 None:intergenic 35.0%
GAAACACTGCAAAGAATCAA+TGG - chr4_4:49601248-49601267 None:intergenic 35.0%
!! GATTTTCAAACTTGGTAGTC+AGG + chr4_4:49601493-49601512 Msa0685460:intron 35.0%
!! TTTTCAAACTTGGTAGTCAG+GGG + chr4_4:49601495-49601514 Msa0685460:intron 35.0%
CTCCACATGTATCTAAATTC+TGG - chr4_4:49601526-49601545 None:intergenic 35.0%
!! AATTTGGTGTCGTATATAGG+CGG + chr4_4:49601737-49601756 Msa0685460:intron 35.0%
! AATAACGGAGCAAAAGTTGA+GGG - chr4_4:49601863-49601882 None:intergenic 35.0%
! ATTTAGCTTCAGGTCTAGTT+GGG - chr4_4:49601935-49601954 None:intergenic 35.0%
! AATTTAGCTTCAGGTCTAGT+TGG - chr4_4:49601936-49601955 None:intergenic 35.0%
TCCTTGCATCATAATTGGTT+GGG - chr4_4:49602015-49602034 None:intergenic 35.0%
ATCCTTGCATCATAATTGGT+TGG - chr4_4:49602016-49602035 None:intergenic 35.0%
! ATGCATGGTTAAGCTTTTGT+GGG - chr4_4:49602110-49602129 None:intergenic 35.0%
CTGTTGCTACACTAATATGT+GGG - chr4_4:49602224-49602243 None:intergenic 35.0%
! TTTTCCCCATAATGATGGTT+CGG - chr4_4:49602260-49602279 None:intergenic 35.0%
CTGTGTTGTGATTTGAAAGA+TGG + chr4_4:49602406-49602425 Msa0685460:intron 35.0%
TTTGCTTCTCTTGATCTTCA+CGG - chr4_4:49602530-49602549 None:intergenic 35.0%
CAAAGATGTTGTCAAGTTCA+AGG + chr4_4:49602546-49602565 Msa0685460:CDS 35.0%
ACAAAGTGTGTACAAGTACT+TGG - chr4_4:49602581-49602600 None:intergenic 35.0%
ATTCTCAAAAACTAACCTGG+GGG - chr4_4:49602646-49602665 None:intergenic 35.0%
! TTCTGTTGGTTGTTATAGGT+CGG + chr4_4:49602765-49602784 Msa0685460:intron 35.0%
GTGTAATGGCCAAATAGATA+TGG + chr4_4:49602849-49602868 Msa0685460:intron 35.0%
GTAATGGCCAAATAGATATG+GGG + chr4_4:49602851-49602870 Msa0685460:intron 35.0%
!!! TGCTATTTTTCTCTCTCAGT+TGG + chr4_4:49602926-49602945 Msa0685460:intron 35.0%
!!! GCTATTTTTCTCTCTCAGTT+GGG + chr4_4:49602927-49602946 Msa0685460:intron 35.0%
GTTGGGAACAACTTATGATA+TGG + chr4_4:49602944-49602963 Msa0685460:intron 35.0%
TGGGAACAACTTATGATATG+GGG + chr4_4:49602946-49602965 Msa0685460:intron 35.0%
!! CATTTACGTTTCACTTTTGC+AGG + chr4_4:49603100-49603119 Msa0685460:intron 35.0%
GCAAGACTTGTAATTCTATC+CGG + chr4_4:49603132-49603151 Msa0685460:exon 35.0%
TCACTCAGTACACATTTAAC+CGG - chr4_4:49603154-49603173 None:intergenic 35.0%
CTTACGACTCTCATTATGAA+TGG + chr4_4:49603246-49603265 Msa0685460:three_prime_UTR 35.0%
GTCAATAGAGGTTAATTGGA+TGG + chr4_4:49603385-49603404 Msa0685460:three_prime_UTR 35.0%
! TTTTTCCTTCCGTATTGAGC+CGG - chr4_4:49601066-49601085 None:intergenic 40.0%
!! AGCGTGCCGATTGTAATATT+TGG + chr4_4:49601171-49601190 Msa0685460:five_prime_UTR 40.0%
!! GCGTGCCGATTGTAATATTT+GGG + chr4_4:49601172-49601191 Msa0685460:five_prime_UTR 40.0%
!! CGTGCCGATTGTAATATTTG+GGG + chr4_4:49601173-49601192 Msa0685460:five_prime_UTR 40.0%
TGTAATATTTGGGGAGGAAG+AGG + chr4_4:49601182-49601201 Msa0685460:five_prime_UTR 40.0%
ATCGCAGCGAAGACAAAAAA+TGG + chr4_4:49601207-49601226 Msa0685460:exon 40.0%
!!! CTTTTTGTTTTATCCGCGAG+TGG - chr4_4:49601710-49601729 None:intergenic 40.0%
CACTCGCGGATAAAACAAAA+AGG + chr4_4:49601708-49601727 Msa0685460:intron 40.0%
! GAATAACGGAGCAAAAGTTG+AGG - chr4_4:49601864-49601883 None:intergenic 40.0%
TCCGTTATTCAATTTGGTCC+CGG + chr4_4:49601874-49601893 Msa0685460:intron 40.0%
TCCGGGACCAAATTGAATAA+CGG - chr4_4:49601878-49601897 None:intergenic 40.0%
!!! GTTTGGAATTTTGCTGTTCC+GGG - chr4_4:49601895-49601914 None:intergenic 40.0%
!!! GGTTTGGAATTTTGCTGTTC+CGG - chr4_4:49601896-49601915 None:intergenic 40.0%
AGCAGCAACCAAAAAAGCTT+TGG + chr4_4:49601976-49601995 Msa0685460:intron 40.0%
!!! GTGTACTGCCAAAGCTTTTT+TGG - chr4_4:49601987-49602006 None:intergenic 40.0%
ACCCAACCAATTATGATGCA+AGG + chr4_4:49602011-49602030 Msa0685460:intron 40.0%
! TAAGCTTTTGTGGGTATGCA+TGG - chr4_4:49602101-49602120 None:intergenic 40.0%
! CATGCATGGTTAAGCTTTTG+TGG - chr4_4:49602111-49602130 None:intergenic 40.0%
!!! GGTGTTTTTAGGAATTGCGT+TGG - chr4_4:49602149-49602168 None:intergenic 40.0%
ATCAGCTCTGCTAAAAAACC+AGG + chr4_4:49602194-49602213 Msa0685460:intron 40.0%
GCTGTTGCTACACTAATATG+TGG - chr4_4:49602225-49602244 None:intergenic 40.0%
! ACAGTACCGAACCATCATTA+TGG + chr4_4:49602251-49602270 Msa0685460:intron 40.0%
! CAGTACCGAACCATCATTAT+GGG + chr4_4:49602252-49602271 Msa0685460:intron 40.0%
! AGTACCGAACCATCATTATG+GGG + chr4_4:49602253-49602272 Msa0685460:intron 40.0%
! CATGCTTTTCCCCATAATGA+TGG - chr4_4:49602265-49602284 None:intergenic 40.0%
! TCATTATGGGGAAAAGCATG+TGG + chr4_4:49602265-49602284 Msa0685460:intron 40.0%
CCTTTATCAACTACCAACAG+GGG - chr4_4:49602325-49602344 None:intergenic 40.0%
CCCTTTATCAACTACCAACA+GGG - chr4_4:49602326-49602345 None:intergenic 40.0%
!! CCCTGTTGGTAGTTGATAAA+GGG + chr4_4:49602323-49602342 Msa0685460:intron 40.0%
TCCCTTTATCAACTACCAAC+AGG - chr4_4:49602327-49602346 None:intergenic 40.0%
GTGCAAGTACTTTCAACTCT+AGG + chr4_4:49602710-49602729 Msa0685460:intron 40.0%
AGTACTTTCAACTCTAGGTG+AGG + chr4_4:49602715-49602734 Msa0685460:intron 40.0%
GTTATAGGTCGGAACCTTAA+AGG + chr4_4:49602776-49602795 Msa0685460:intron 40.0%
!! GTGAAGATCAAGTGTTGCTT+TGG + chr4_4:49603170-49603189 Msa0685460:three_prime_UTR 40.0%
TCATAATGAGAGTCGTAAGC+TGG - chr4_4:49603245-49603264 None:intergenic 40.0%
! TTTTTCCTTCCGTATTGAGC+CGG - chr4_4:49601066-49601085 None:intergenic 40.0%
!! AGCGTGCCGATTGTAATATT+TGG + chr4_4:49601171-49601190 Msa0685460:five_prime_UTR 40.0%
!! GCGTGCCGATTGTAATATTT+GGG + chr4_4:49601172-49601191 Msa0685460:five_prime_UTR 40.0%
!! CGTGCCGATTGTAATATTTG+GGG + chr4_4:49601173-49601192 Msa0685460:five_prime_UTR 40.0%
TGTAATATTTGGGGAGGAAG+AGG + chr4_4:49601182-49601201 Msa0685460:five_prime_UTR 40.0%
ATCGCAGCGAAGACAAAAAA+TGG + chr4_4:49601207-49601226 Msa0685460:exon 40.0%
!!! CTTTTTGTTTTATCCGCGAG+TGG - chr4_4:49601710-49601729 None:intergenic 40.0%
CACTCGCGGATAAAACAAAA+AGG + chr4_4:49601708-49601727 Msa0685460:intron 40.0%
! GAATAACGGAGCAAAAGTTG+AGG - chr4_4:49601864-49601883 None:intergenic 40.0%
TCCGTTATTCAATTTGGTCC+CGG + chr4_4:49601874-49601893 Msa0685460:intron 40.0%
TCCGGGACCAAATTGAATAA+CGG - chr4_4:49601878-49601897 None:intergenic 40.0%
!!! GTTTGGAATTTTGCTGTTCC+GGG - chr4_4:49601895-49601914 None:intergenic 40.0%
!!! GGTTTGGAATTTTGCTGTTC+CGG - chr4_4:49601896-49601915 None:intergenic 40.0%
AGCAGCAACCAAAAAAGCTT+TGG + chr4_4:49601976-49601995 Msa0685460:intron 40.0%
!!! GTGTACTGCCAAAGCTTTTT+TGG - chr4_4:49601987-49602006 None:intergenic 40.0%
ACCCAACCAATTATGATGCA+AGG + chr4_4:49602011-49602030 Msa0685460:intron 40.0%
! TAAGCTTTTGTGGGTATGCA+TGG - chr4_4:49602101-49602120 None:intergenic 40.0%
! CATGCATGGTTAAGCTTTTG+TGG - chr4_4:49602111-49602130 None:intergenic 40.0%
!!! GGTGTTTTTAGGAATTGCGT+TGG - chr4_4:49602149-49602168 None:intergenic 40.0%
ATCAGCTCTGCTAAAAAACC+AGG + chr4_4:49602194-49602213 Msa0685460:intron 40.0%
GCTGTTGCTACACTAATATG+TGG - chr4_4:49602225-49602244 None:intergenic 40.0%
! ACAGTACCGAACCATCATTA+TGG + chr4_4:49602251-49602270 Msa0685460:intron 40.0%
! CAGTACCGAACCATCATTAT+GGG + chr4_4:49602252-49602271 Msa0685460:intron 40.0%
! AGTACCGAACCATCATTATG+GGG + chr4_4:49602253-49602272 Msa0685460:intron 40.0%
! CATGCTTTTCCCCATAATGA+TGG - chr4_4:49602265-49602284 None:intergenic 40.0%
! TCATTATGGGGAAAAGCATG+TGG + chr4_4:49602265-49602284 Msa0685460:intron 40.0%
CCTTTATCAACTACCAACAG+GGG - chr4_4:49602325-49602344 None:intergenic 40.0%
CCCTTTATCAACTACCAACA+GGG - chr4_4:49602326-49602345 None:intergenic 40.0%
!! CCCTGTTGGTAGTTGATAAA+GGG + chr4_4:49602323-49602342 Msa0685460:intron 40.0%
TCCCTTTATCAACTACCAAC+AGG - chr4_4:49602327-49602346 None:intergenic 40.0%
GTGCAAGTACTTTCAACTCT+AGG + chr4_4:49602710-49602729 Msa0685460:intron 40.0%
AGTACTTTCAACTCTAGGTG+AGG + chr4_4:49602715-49602734 Msa0685460:intron 40.0%
GTTATAGGTCGGAACCTTAA+AGG + chr4_4:49602776-49602795 Msa0685460:intron 40.0%
!! GTGAAGATCAAGTGTTGCTT+TGG + chr4_4:49603170-49603189 Msa0685460:three_prime_UTR 40.0%
TCATAATGAGAGTCGTAAGC+TGG - chr4_4:49603245-49603264 None:intergenic 40.0%
! CTTGGTAAACCGGCTCAATA+CGG + chr4_4:49601054-49601073 Msa0685460:five_prime_UTR 45.0%
TACTATCCTTATCCCAACGC+GGG - chr4_4:49601090-49601109 None:intergenic 45.0%
GTACTATCCTTATCCCAACG+CGG - chr4_4:49601091-49601110 None:intergenic 45.0%
GCCGATTGTAATATTTGGGG+AGG + chr4_4:49601176-49601195 Msa0685460:five_prime_UTR 45.0%
!!! AGAGGTGGGTTGTTTTGGTT+TGG - chr4_4:49601912-49601931 None:intergenic 45.0%
! GCATTTTTGTGAGGCATGCA+TGG - chr4_4:49602125-49602144 None:intergenic 45.0%
!! TGCGTTGGTGCATTTTTGTG+AGG - chr4_4:49602134-49602153 None:intergenic 45.0%
!! GCAGCTCTGTTGGTGTTTTT+AGG - chr4_4:49602160-49602179 None:intergenic 45.0%
GAGCTGATATGTTGTGTGTG+TGG - chr4_4:49602182-49602201 None:intergenic 45.0%
CACTAATATGTGGGAGTTCC+TGG - chr4_4:49602215-49602234 None:intergenic 45.0%
!! GATGGTTCGGTACTGTTACA+AGG - chr4_4:49602247-49602266 None:intergenic 45.0%
GATGTATGTGGGAGCTATGT+GGG - chr4_4:49602300-49602319 None:intergenic 45.0%
TTATCAACTACCAACAGGGG+CGG - chr4_4:49602322-49602341 None:intergenic 45.0%
!! CCCCTGTTGGTAGTTGATAA+AGG + chr4_4:49602322-49602341 Msa0685460:intron 45.0%
! CTTGGTAAACCGGCTCAATA+CGG + chr4_4:49601054-49601073 Msa0685460:five_prime_UTR 45.0%
TACTATCCTTATCCCAACGC+GGG - chr4_4:49601090-49601109 None:intergenic 45.0%
GTACTATCCTTATCCCAACG+CGG - chr4_4:49601091-49601110 None:intergenic 45.0%
GCCGATTGTAATATTTGGGG+AGG + chr4_4:49601176-49601195 Msa0685460:five_prime_UTR 45.0%
!!! AGAGGTGGGTTGTTTTGGTT+TGG - chr4_4:49601912-49601931 None:intergenic 45.0%
! GCATTTTTGTGAGGCATGCA+TGG - chr4_4:49602125-49602144 None:intergenic 45.0%
!! TGCGTTGGTGCATTTTTGTG+AGG - chr4_4:49602134-49602153 None:intergenic 45.0%
!! GCAGCTCTGTTGGTGTTTTT+AGG - chr4_4:49602160-49602179 None:intergenic 45.0%
GAGCTGATATGTTGTGTGTG+TGG - chr4_4:49602182-49602201 None:intergenic 45.0%
CACTAATATGTGGGAGTTCC+TGG - chr4_4:49602215-49602234 None:intergenic 45.0%
!! GATGGTTCGGTACTGTTACA+AGG - chr4_4:49602247-49602266 None:intergenic 45.0%
GATGTATGTGGGAGCTATGT+GGG - chr4_4:49602300-49602319 None:intergenic 45.0%
TTATCAACTACCAACAGGGG+CGG - chr4_4:49602322-49602341 None:intergenic 45.0%
!! CCCCTGTTGGTAGTTGATAA+AGG + chr4_4:49602322-49602341 Msa0685460:intron 45.0%
! GTAAACCGGCTCAATACGGA+AGG + chr4_4:49601058-49601077 Msa0685460:five_prime_UTR 50.0%
AAAAAGCCCGCGTTGGGATA+AGG + chr4_4:49601081-49601100 Msa0685460:five_prime_UTR 50.0%
ATTACAATCGGCACGCTCGA+AGG - chr4_4:49601168-49601187 None:intergenic 50.0%
! TCAAACTTGGTAGTCAGGGG+CGG + chr4_4:49601498-49601517 Msa0685460:intron 50.0%
!!! TTGGGAGAGGTGGGTTGTTT+TGG - chr4_4:49601917-49601936 None:intergenic 50.0%
GGATGTATGTGGGAGCTATG+TGG - chr4_4:49602301-49602320 None:intergenic 50.0%
TTGAAGCAATCACTTCCCCC+AGG + chr4_4:49602628-49602647 Msa0685460:CDS 50.0%
! GTAAACCGGCTCAATACGGA+AGG + chr4_4:49601058-49601077 Msa0685460:five_prime_UTR 50.0%
AAAAAGCCCGCGTTGGGATA+AGG + chr4_4:49601081-49601100 Msa0685460:five_prime_UTR 50.0%
ATTACAATCGGCACGCTCGA+AGG - chr4_4:49601168-49601187 None:intergenic 50.0%
! TCAAACTTGGTAGTCAGGGG+CGG + chr4_4:49601498-49601517 Msa0685460:intron 50.0%
!!! TTGGGAGAGGTGGGTTGTTT+TGG - chr4_4:49601917-49601936 None:intergenic 50.0%
GGATGTATGTGGGAGCTATG+TGG - chr4_4:49602301-49602320 None:intergenic 50.0%
TTGAAGCAATCACTTCCCCC+AGG + chr4_4:49602628-49602647 Msa0685460:CDS 50.0%
GGAAGGAAAAAGCCCGCGTT+GGG + chr4_4:49601075-49601094 Msa0685460:five_prime_UTR 55.0%
CAGGTCTAGTTGGGAGAGGT+GGG - chr4_4:49601926-49601945 None:intergenic 55.0%
TCAGGTCTAGTTGGGAGAGG+TGG - chr4_4:49601927-49601946 None:intergenic 55.0%
GCTTCAGGTCTAGTTGGGAG+AGG - chr4_4:49601930-49601949 None:intergenic 55.0%
TGTGTGTGTGGCAGCTCTGT+TGG - chr4_4:49602170-49602189 None:intergenic 55.0%
CAACAGGGGCGGATGTATGT+GGG - chr4_4:49602311-49602330 None:intergenic 55.0%
AGGACTTCCTCCTCACTGCT+AGG + chr4_4:49602488-49602507 Msa0685460:CDS 55.0%
ACTTCCTCCTCACTGCTAGG+AGG + chr4_4:49602491-49602510 Msa0685460:CDS 55.0%
CATCCTTCCTCCTAGCAGTG+AGG - chr4_4:49602501-49602520 None:intergenic 55.0%
GGAAGGAAAAAGCCCGCGTT+GGG + chr4_4:49601075-49601094 Msa0685460:five_prime_UTR 55.0%
CAGGTCTAGTTGGGAGAGGT+GGG - chr4_4:49601926-49601945 None:intergenic 55.0%
TCAGGTCTAGTTGGGAGAGG+TGG - chr4_4:49601927-49601946 None:intergenic 55.0%
GCTTCAGGTCTAGTTGGGAG+AGG - chr4_4:49601930-49601949 None:intergenic 55.0%
TGTGTGTGTGGCAGCTCTGT+TGG - chr4_4:49602170-49602189 None:intergenic 55.0%
CAACAGGGGCGGATGTATGT+GGG - chr4_4:49602311-49602330 None:intergenic 55.0%
AGGACTTCCTCCTCACTGCT+AGG + chr4_4:49602488-49602507 Msa0685460:CDS 55.0%
ACTTCCTCCTCACTGCTAGG+AGG + chr4_4:49602491-49602510 Msa0685460:CDS 55.0%
CATCCTTCCTCCTAGCAGTG+AGG - chr4_4:49602501-49602520 None:intergenic 55.0%
CGGAAGGAAAAAGCCCGCGT+TGG + chr4_4:49601074-49601093 Msa0685460:five_prime_UTR 60.0%
CCAACAGGGGCGGATGTATG+TGG - chr4_4:49602312-49602331 None:intergenic 60.0%
CCACATACATCCGCCCCTGT+TGG + chr4_4:49602309-49602328 Msa0685460:intron 60.0%
CCTTCCTCCTAGCAGTGAGG+AGG - chr4_4:49602498-49602517 None:intergenic 60.0%
CCTCCTCACTGCTAGGAGGA+AGG + chr4_4:49602495-49602514 Msa0685460:CDS 60.0%
CGGAAGGAAAAAGCCCGCGT+TGG + chr4_4:49601074-49601093 Msa0685460:five_prime_UTR 60.0%
CCAACAGGGGCGGATGTATG+TGG - chr4_4:49602312-49602331 None:intergenic 60.0%
CCACATACATCCGCCCCTGT+TGG + chr4_4:49602309-49602328 Msa0685460:intron 60.0%
CCTTCCTCCTAGCAGTGAGG+AGG - chr4_4:49602498-49602517 None:intergenic 60.0%
CCTCCTCACTGCTAGGAGGA+AGG + chr4_4:49602495-49602514 Msa0685460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49601041 49603456 49601041 ID=Msa0685460;Name=Msa0685460
chr4_4 mRNA 49601041 49603456 49601041 ID=Msa0685460-mRNA-1;Parent=Msa0685460;Name=Msa0685460-mRNA-1;_AED=0.38;_eAED=0.38;_QI=185|1|1|1|0.5|0.66|3|312|69
chr4_4 exon 49601041 49601228 49601041 ID=Msa0685460-mRNA-1:exon:12538;Parent=Msa0685460-mRNA-1
chr4_4 exon 49602466 49602649 49602466 ID=Msa0685460-mRNA-1:exon:12539;Parent=Msa0685460-mRNA-1
chr4_4 exon 49603122 49603456 49603122 ID=Msa0685460-mRNA-1:exon:12540;Parent=Msa0685460-mRNA-1
chr4_4 five_prime_UTR 49601041 49601225 49601041 ID=Msa0685460-mRNA-1:five_prime_utr;Parent=Msa0685460-mRNA-1
chr4_4 CDS 49601226 49601228 49601226 ID=Msa0685460-mRNA-1:cds;Parent=Msa0685460-mRNA-1
chr4_4 CDS 49602466 49602649 49602466 ID=Msa0685460-mRNA-1:cds;Parent=Msa0685460-mRNA-1
chr4_4 CDS 49603122 49603144 49603122 ID=Msa0685460-mRNA-1:cds;Parent=Msa0685460-mRNA-1
chr4_4 three_prime_UTR 49603145 49603456 49603145 ID=Msa0685460-mRNA-1:three_prime_utr;Parent=Msa0685460-mRNA-1
Gene Sequence

>Msa0685460

ATGCCTAAGCAAATCAATGAGATTAAGGACTTCCTCCTCACTGCTAGGAGGAAGGATGCACGCTCCGTGAAGATCAAGAGAAGCAAAGATGTTGTCAAGTTCAAGGTTCGATGCTCCAAGTACTTGTACACACTTTGTGTGTTTGATACTGAGAAAGCTGATAAGTTGAAGCAATCACTTCCCCCAGGTTTGAATGTGCAAGACTTGTAA
Protein sequence

>Msa0685460

MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLNVQDL*