Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011590 | XP_003589591.1 | 93.739 | 1182 | 70 | 1 | 1 | 1182 | 1 | 1178 | 0.0 | 2302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011590 | sp|Q96QE3|ATAD5_HUMAN | 29.058 | 382 | 203 | 8 | 278 | 602 | 1049 | 1419 | 1.96e-31 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011590 | Msa0060510 | 0.860826 | 1.575151e-63 | -8.615850e-47 |
| Msa0011590 | Msa0464900 | 0.812920 | 3.325006e-51 | -8.615850e-47 |
| Msa0011590 | Msa1037700 | -0.800272 | 1.558190e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011590 | MtrunA17_Chr1g0160121 | 93.739 | 1182 | 70 | 1 | 1 | 1182 | 1 | 1178 | 0.0 | 2302 |
| Msa0011590 | MtrunA17_Chr3g0114611 | 54.452 | 1168 | 469 | 16 | 25 | 1172 | 70 | 1194 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011590 | AT1G77620.1 | 33.306 | 1198 | 651 | 39 | 19 | 1168 | 52 | 1149 | 5.73e-137 | 446 |
Find 246 sgRNAs with CRISPR-Local
Find 579 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAGTTATCAAAATTTA+AGG | 0.124385 | 1_1:+17479369 | None:intergenic |
| TCTACAGAATGTCTATTATT+TGG | 0.163033 | 1_1:+17474111 | None:intergenic |
| CTTAGATTTCATTTGATAAT+AGG | 0.199465 | 1_1:-17472473 | Msa0011590:three_prime_UTR |
| TTAGCATCTTCCGGCTTTAA+AGG | 0.204313 | 1_1:+17479208 | None:intergenic |
| AGAAGAAGTGGGATCGAAAT+TGG | 0.212976 | 1_1:-17473174 | Msa0011590:CDS |
| GGCTTCTACTACAAATATTA+TGG | 0.214892 | 1_1:-17473114 | Msa0011590:CDS |
| ACTGCTGTCAAGCAGTATTT+TGG | 0.216334 | 1_1:-17475864 | Msa0011590:CDS |
| TGTTCATGGTGTGAGGAATT+AGG | 0.220415 | 1_1:+17480849 | None:intergenic |
| GGAAAAGAAATTTAAGGATT+TGG | 0.221572 | 1_1:-17480118 | Msa0011590:CDS |
| TTGGGGTGGAATTGAGAAAT+TGG | 0.222653 | 1_1:+17480879 | None:intergenic |
| ACTACAAATATTATGGCTTT+TGG | 0.229067 | 1_1:-17473107 | Msa0011590:CDS |
| GCTGAACATGCAGGGTATTA+TGG | 0.230458 | 1_1:-17473303 | Msa0011590:intron |
| TAAGGTGGAAAAGAAATTTA+AGG | 0.235150 | 1_1:-17480124 | Msa0011590:CDS |
| AATCCTCTGAAATTGAAATT+TGG | 0.243694 | 1_1:+17472787 | None:intergenic |
| TTTGGTGAGCTACTGCATTC+TGG | 0.246063 | 1_1:-17473994 | Msa0011590:CDS |
| ACCAGTCACGCAAGAAATTC+AGG | 0.253423 | 1_1:+17478502 | None:intergenic |
| TTTGATATATATTGGGATTT+GGG | 0.255321 | 1_1:+17480906 | None:intergenic |
| TGTAGTCTACAAAAGTTATT+TGG | 0.257206 | 1_1:+17475161 | None:intergenic |
| TTAGATTTCATTTGATAATA+GGG | 0.268450 | 1_1:-17472472 | Msa0011590:three_prime_UTR |
| GCAGTTTGTCTGCTGCTAAT+AGG | 0.274337 | 1_1:-17480083 | Msa0011590:CDS |
| CCATTCTGCATCTTCAGTTC+TGG | 0.277127 | 1_1:-17474915 | Msa0011590:CDS |
| GAGGAATTAGGGTTCAATTT+GGG | 0.280776 | 1_1:+17480861 | None:intergenic |
| TATTTCTCTTGGAGAAGATT+TGG | 0.284568 | 1_1:+17473675 | None:intergenic |
| TGAGGAATTAGGGTTCAATT+TGG | 0.290436 | 1_1:+17480860 | None:intergenic |
| TCGGAAACAAATCTTGATTC+TGG | 0.296800 | 1_1:+17473874 | None:intergenic |
| TCTGAGTTATATAGTTGTTC+TGG | 0.300439 | 1_1:-17474210 | Msa0011590:CDS |
| AAATCTCAAACCCTTGTTCT+TGG | 0.301307 | 1_1:+17477591 | None:intergenic |
| ACTATAGCTACTCATGGTTT+TGG | 0.301974 | 1_1:+17473061 | None:intergenic |
| GAAAAGAAATTTAAGGATTT+GGG | 0.306887 | 1_1:-17480117 | Msa0011590:CDS |
| TGTTGATTCTAGTCCATCTA+TGG | 0.308758 | 1_1:-17473557 | Msa0011590:CDS |
| GATGAAGGCAGTACTGTATC+AGG | 0.309635 | 1_1:-17479012 | Msa0011590:CDS |
| GTTCATGGTGTGAGGAATTA+GGG | 0.314446 | 1_1:+17480850 | None:intergenic |
| AAGAAAGTGCAGACATTATA+TGG | 0.315116 | 1_1:-17474519 | Msa0011590:CDS |
| TTATTTGAGCAGAGGTAAAA+TGG | 0.324209 | 1_1:-17472607 | Msa0011590:CDS |
| ATCCACGATCTTCAGGAAAA+AGG | 0.325167 | 1_1:+17475348 | None:intergenic |
| CAGTTTGTCTGCTGCTAATA+GGG | 0.333097 | 1_1:-17480082 | Msa0011590:CDS |
| GACTTCGTTCTCAATTAGTT+TGG | 0.333349 | 1_1:+17474419 | None:intergenic |
| AGCTATGCCAGTACGTCTTT+TGG | 0.333721 | 1_1:-17474012 | Msa0011590:CDS |
| TAATTAAAAGAACATTCTTC+AGG | 0.338128 | 1_1:+17478340 | None:intergenic |
| GAGTCTACAGTTGTGTCTTC+TGG | 0.342872 | 1_1:-17473823 | Msa0011590:CDS |
| TCAGTAGTCACCACCAAATC+TGG | 0.343163 | 1_1:+17473703 | None:intergenic |
| TGGGGTGGAATTGAGAAATT+GGG | 0.344212 | 1_1:+17480880 | None:intergenic |
| ATTTCTCTTGGAGAAGATTT+GGG | 0.344875 | 1_1:+17473676 | None:intergenic |
| CATACCACTTTAGCATCTTC+CGG | 0.349737 | 1_1:+17479199 | None:intergenic |
| CCCTGAATTTCTTGCGTGAC+TGG | 0.351843 | 1_1:-17478503 | Msa0011590:CDS |
| TCATGTATTTGAAGATATTA+CGG | 0.359838 | 1_1:-17480031 | Msa0011590:intron |
| TGTTGTTGTTGTTCAGCTAC+TGG | 0.375512 | 1_1:+17480794 | None:intergenic |
| CTGTTGCTGGTCAATATAAT+TGG | 0.375579 | 1_1:+17475284 | None:intergenic |
| GTCAGTTTGATCCTTGTTAG+AGG | 0.378622 | 1_1:+17478437 | None:intergenic |
| CATCTCTTGACTGGAGTGAT+TGG | 0.380843 | 1_1:-17479471 | Msa0011590:CDS |
| TTTGATTCAATAGAAAGTTA+AGG | 0.382479 | 1_1:+17474034 | None:intergenic |
| TAACTTAGATGTTCAGTGTA+TGG | 0.388265 | 1_1:-17474313 | Msa0011590:CDS |
| GCAATACATCCACGATCTTC+AGG | 0.389679 | 1_1:+17475341 | None:intergenic |
| ATATCTTCAAATACATGAAT+AGG | 0.393586 | 1_1:+17480036 | None:intergenic |
| TGAGCTACTGCATTCTGGTT+TGG | 0.393661 | 1_1:-17473989 | Msa0011590:CDS |
| AATCTCAAACCCTTGTTCTT+GGG | 0.395171 | 1_1:+17477592 | None:intergenic |
| TATACCTCTTATCGTTTCTT+CGG | 0.403039 | 1_1:+17473015 | None:intergenic |
| GTTGCTTCATCACTTGTTAA+CGG | 0.403392 | 1_1:-17475108 | Msa0011590:intron |
| TGCGTGACTGGTTACATCAT+TGG | 0.404069 | 1_1:-17478491 | Msa0011590:CDS |
| TCTTTAGCTTCTTTAACATT+AGG | 0.404506 | 1_1:+17475518 | None:intergenic |
| GCCGTTGTTGATGATCTTGC+AGG | 0.405319 | 1_1:+17472852 | None:intergenic |
| TAGCATCTTCCGGCTTTAAA+GGG | 0.405552 | 1_1:+17479209 | None:intergenic |
| TTGATTCAATAGAAAGTTAA+GGG | 0.406538 | 1_1:+17474035 | None:intergenic |
| TCAGCTACTGGTTTCTGATT+CGG | 0.407682 | 1_1:+17480806 | None:intergenic |
| ATAAGGCTGAGAGCAGCTTA+TGG | 0.408031 | 1_1:-17478701 | Msa0011590:CDS |
| TGGTGGACACCTTGCTTGTC+CGG | 0.410037 | 1_1:-17473803 | Msa0011590:CDS |
| AGACAAGGCATTCTGAGAAA+TGG | 0.412315 | 1_1:+17479321 | None:intergenic |
| CTTTCAAACTCACCACGGTC+TGG | 0.412982 | 1_1:+17474249 | None:intergenic |
| GAAAATTCGAGGATGTTTGC+AGG | 0.413543 | 1_1:-17480177 | Msa0011590:CDS |
| GAAGAAGTGGGATCGAAATT+GGG | 0.415365 | 1_1:-17473173 | Msa0011590:CDS |
| AGGGCATGTTTCTTTCTCAT+TGG | 0.415987 | 1_1:+17479228 | None:intergenic |
| TGCTCTATATCTCAGTTTAG+TGG | 0.416926 | 1_1:-17475597 | Msa0011590:intron |
| AAATCTGGTGCTATTTCTCT+TGG | 0.417438 | 1_1:+17473664 | None:intergenic |
| TCTTTAACATTAGGCGAAGC+TGG | 0.426037 | 1_1:+17475527 | None:intergenic |
| TCCCACTTCTTCTATATGCT+TGG | 0.429599 | 1_1:+17473184 | None:intergenic |
| CTGCCAAAGTTGTGAAGATA+AGG | 0.431284 | 1_1:-17478718 | Msa0011590:CDS |
| AAGAATCAGTGTTGCCTTCA+AGG | 0.431318 | 1_1:+17474058 | None:intergenic |
| GAGATCAGTTGGGTTGTTCA+TGG | 0.432265 | 1_1:+17480835 | None:intergenic |
| ATCTGGATCTTGAGGCACTT+TGG | 0.434126 | 1_1:+17473720 | None:intergenic |
| AGAAAGTTATCAAAATTTAA+GGG | 0.434763 | 1_1:+17479370 | None:intergenic |
| ATATGCAAACTCACTGTTGC+TGG | 0.434866 | 1_1:+17475271 | None:intergenic |
| TTTGAAGCATAGTCACAATC+AGG | 0.436058 | 1_1:+17478384 | None:intergenic |
| AAATTAAATAGAGCAGCAAT+AGG | 0.447176 | 1_1:-17472312 | Msa0011590:three_prime_UTR |
| GCTTTGACTTTGTTGATGAT+TGG | 0.447354 | 1_1:-17472401 | Msa0011590:three_prime_UTR |
| GTTAATGGAGTTAAGGGAAC+TGG | 0.451103 | 1_1:-17480471 | Msa0011590:CDS |
| CAGCCTTATCTTCACAACTT+TGG | 0.452105 | 1_1:+17478715 | None:intergenic |
| CGGGTCGGTTAATGGAGTTA+AGG | 0.454889 | 1_1:-17480478 | Msa0011590:CDS |
| TTTCAGCGTTTGTCAGCGCT+TGG | 0.454940 | 1_1:-17473743 | Msa0011590:CDS |
| TACAAGAGACAGTCCCTTGA+AGG | 0.455029 | 1_1:-17474072 | Msa0011590:CDS |
| CTCTTTACTATAGCTACTCA+TGG | 0.455923 | 1_1:+17473055 | None:intergenic |
| CAATGGAAAACCACTCAAGC+TGG | 0.456812 | 1_1:-17474380 | Msa0011590:CDS |
| ATAAATTTCTCAAGTAAAAG+AGG | 0.461699 | 1_1:+17474967 | None:intergenic |
| TTCGGTGAATTGAGATCAGT+TGG | 0.466035 | 1_1:+17480824 | None:intergenic |
| TTTCTCAAGTAAAAGAGGTT+CGG | 0.467269 | 1_1:+17474972 | None:intergenic |
| AAGTGATGAAGCAACTCATC+TGG | 0.468096 | 1_1:+17475116 | None:intergenic |
| AACTTAGATGTTCAGTGTAT+GGG | 0.468798 | 1_1:-17474312 | Msa0011590:CDS |
| GAAAATTGATTTGCGGTTGG+AGG | 0.469124 | 1_1:-17480430 | Msa0011590:CDS |
| TATTATGATCATCATGGCTC+GGG | 0.472103 | 1_1:-17472340 | Msa0011590:three_prime_UTR |
| GGGTCGGTTAATGGAGTTAA+GGG | 0.472590 | 1_1:-17480477 | Msa0011590:CDS |
| TTGGATCACAATGTGTCAAA+AGG | 0.473045 | 1_1:-17475833 | Msa0011590:intron |
| AGTGCCTCAAGATCCAGATT+TGG | 0.473131 | 1_1:-17473716 | Msa0011590:CDS |
| TGACCAGCCTCAAGATCAAA+AGG | 0.474195 | 1_1:+17474489 | None:intergenic |
| AAAATATGTTAAAGAATGAA+TGG | 0.474521 | 1_1:+17472449 | None:intergenic |
| CATTAGGCGAAGCTGGAGCT+TGG | 0.479606 | 1_1:+17475534 | None:intergenic |
| AGGAATTAGGGTTCAATTTG+GGG | 0.480012 | 1_1:+17480862 | None:intergenic |
| TCTTCATCAGACAGGGAAGT+TGG | 0.482991 | 1_1:+17473275 | None:intergenic |
| ATGTCAACTGTTGCTGTACA+TGG | 0.483504 | 1_1:-17473221 | Msa0011590:CDS |
| ATAATTCTACATACCCCAAC+TGG | 0.483632 | 1_1:+17478312 | None:intergenic |
| CTGGTTCGCCTGACGTGGCT+CGG | 0.491132 | 1_1:-17480452 | Msa0011590:CDS |
| ACATCACTACAAATTTACTT+TGG | 0.491579 | 1_1:+17474157 | None:intergenic |
| TGTTTCGGCAATGTGTTGTA+TGG | 0.497684 | 1_1:+17475316 | None:intergenic |
| ATAAATCACTTGATATGTCC+TGG | 0.499529 | 1_1:-17473900 | Msa0011590:CDS |
| GGTAACATCCTCTTGGCAAA+AGG | 0.500082 | 1_1:-17474181 | Msa0011590:CDS |
| CACAACAATGATATATCGTC+AGG | 0.500190 | 1_1:+17472576 | None:intergenic |
| TTCCATTGTAGCTATTGACT+TGG | 0.505558 | 1_1:+17474395 | None:intergenic |
| AGACATAACTTCAGAGATGT+TGG | 0.505661 | 1_1:-17473135 | Msa0011590:CDS |
| TTGATGATTGGCATAGGAGT+AGG | 0.506674 | 1_1:-17472389 | Msa0011590:three_prime_UTR |
| TAACTCTGAGGGGAAACTCC+AGG | 0.512348 | 1_1:+17474443 | None:intergenic |
| AATTAAAAGAACATTCTTCA+GGG | 0.512671 | 1_1:+17478341 | None:intergenic |
| TGACAAACGCTGAAAGAGAA+TGG | 0.515735 | 1_1:+17473751 | None:intergenic |
| TAAACGTCTCTTCATCAGAC+AGG | 0.516468 | 1_1:+17473267 | None:intergenic |
| CACATTGCCGAAACAGCAAA+AGG | 0.518228 | 1_1:-17475308 | Msa0011590:CDS |
| GAAAACCACTCAAGCTGGGA+AGG | 0.518997 | 1_1:-17474375 | Msa0011590:CDS |
| GAATATCTCTGTCACAAGAC+TGG | 0.519467 | 1_1:+17474944 | None:intergenic |
| TTATAATCACCATCACCATC+TGG | 0.519633 | 1_1:+17478411 | None:intergenic |
| ATGATACTTCATCTCTTGAC+TGG | 0.519939 | 1_1:-17479480 | Msa0011590:CDS |
| GTCCACTGATGCTATGGATA+AGG | 0.520330 | 1_1:-17474136 | Msa0011590:CDS |
| GAGTGACTGCACTCATCCAT+CGG | 0.521670 | 1_1:+17473604 | None:intergenic |
| TCAAAAGATGTTAGCGAGGA+GGG | 0.523175 | 1_1:-17478366 | Msa0011590:CDS |
| GACCCTCGGTAACATCCTCT+TGG | 0.525045 | 1_1:-17474188 | Msa0011590:CDS |
| ATGATAACCCTATCCGATGA+TGG | 0.525665 | 1_1:-17475473 | Msa0011590:CDS |
| TCATCAGACAGGGAAGTTGG+AGG | 0.526181 | 1_1:+17473278 | None:intergenic |
| AGATGTAAGTGTATTATCAA+TGG | 0.529296 | 1_1:+17475412 | None:intergenic |
| ACTGTATCGATCTCCATAGA+TGG | 0.531998 | 1_1:+17473544 | None:intergenic |
| CCCCTTCAAAATCCACTCCT+CGG | 0.532038 | 1_1:-17480730 | Msa0011590:CDS |
| CATGAGCTCCATCATCGGAT+AGG | 0.532379 | 1_1:+17475465 | None:intergenic |
| ATGATGATCATAATAATCAC+AGG | 0.532383 | 1_1:+17472348 | None:intergenic |
| AACTTCTGAGACGTTCCACC+AGG | 0.532892 | 1_1:+17475440 | None:intergenic |
| CTGATGAAGAGACGTTTAGT+TGG | 0.532923 | 1_1:-17473262 | Msa0011590:CDS |
| CGCCAAGTCAATAGCTACAA+TGG | 0.533424 | 1_1:-17474397 | Msa0011590:CDS |
| CAGAAAGGATTCCTCTAACA+AGG | 0.536790 | 1_1:-17478448 | Msa0011590:CDS |
| CAGGACTTGGAGGTGGATGA+AGG | 0.537608 | 1_1:-17479027 | Msa0011590:CDS |
| AATTGGATTAGGAAAATTCG+AGG | 0.537859 | 1_1:-17480188 | Msa0011590:intron |
| ATGAGCTCCATCATCGGATA+GGG | 0.538228 | 1_1:+17475466 | None:intergenic |
| GATATATATTGGGATTTGGG+AGG | 0.538617 | 1_1:+17480909 | None:intergenic |
| ATATATATTGGGATTTGGGA+GGG | 0.539549 | 1_1:+17480910 | None:intergenic |
| TGCCAAGCATATAGAAGAAG+TGG | 0.539928 | 1_1:-17473186 | Msa0011590:CDS |
| TTATTACCAGGACTTGGAGG+TGG | 0.541586 | 1_1:-17479034 | Msa0011590:intron |
| TTCTGGTTTGGAAGATTCAG+AGG | 0.541655 | 1_1:-17473977 | Msa0011590:CDS |
| TGGCTCGGAAAATTGATTTG+CGG | 0.545116 | 1_1:-17480437 | Msa0011590:CDS |
| AGCACCTGTCTGTTCTGAGC+TGG | 0.547082 | 1_1:+17473477 | None:intergenic |
| AAATTATTACCAGGACTTGG+AGG | 0.547686 | 1_1:-17479037 | Msa0011590:intron |
| ATGATAATTATTTAGGTATG+CGG | 0.547846 | 1_1:-17478537 | Msa0011590:intron |
| TAGCTCACCAAAAGACGTAC+TGG | 0.549623 | 1_1:+17474005 | None:intergenic |
| ATATAGTTGTTCTGGACCCT+CGG | 0.550650 | 1_1:-17474202 | Msa0011590:CDS |
| GAAGTTGTTAAGCTTGCTAG+TGG | 0.551315 | 1_1:-17473451 | Msa0011590:CDS |
| CTGAGAAATGGATGTGCTTG+AGG | 0.551351 | 1_1:+17479333 | None:intergenic |
| TATGCTTGTGCCCAAGAACA+AGG | 0.551433 | 1_1:-17477602 | Msa0011590:CDS |
| TGTGATTATTATGATCATCA+TGG | 0.552176 | 1_1:-17472346 | Msa0011590:three_prime_UTR |
| GATGATGGAGCTCATGGTCC+TGG | 0.552540 | 1_1:-17475458 | Msa0011590:CDS |
| GCGCCAAATTTCAATTTCAG+AGG | 0.555629 | 1_1:-17472790 | Msa0011590:CDS |
| AAGCTGGGAAGGGTTAGTTA+AGG | 0.555894 | 1_1:-17474364 | Msa0011590:CDS |
| AGAAACATGCCCTTTAAAGC+CGG | 0.559741 | 1_1:-17479218 | Msa0011590:CDS |
| ATTAGTTTGGATAACTCTGA+GGG | 0.559852 | 1_1:+17474432 | None:intergenic |
| TCGGAAAATTGATTTGCGGT+TGG | 0.559901 | 1_1:-17480433 | Msa0011590:CDS |
| GGGAACTGGTTCGCCTGACG+TGG | 0.564149 | 1_1:-17480457 | Msa0011590:CDS |
| CCAGTCACGCAAGAAATTCA+GGG | 0.564944 | 1_1:+17478503 | None:intergenic |
| AGAATCAGTGTTGCCTTCAA+GGG | 0.565025 | 1_1:+17474059 | None:intergenic |
| TTATTATGATCATCATGGCT+CGG | 0.565347 | 1_1:-17472341 | Msa0011590:three_prime_UTR |
| AGTGATGTCCACTGATGCTA+TGG | 0.566893 | 1_1:-17474142 | Msa0011590:CDS |
| ATCCTTATCCATAGCATCAG+TGG | 0.568152 | 1_1:+17474134 | None:intergenic |
| AGTGACTGCACTCATCCATC+GGG | 0.568345 | 1_1:+17473605 | None:intergenic |
| GCCTCAAGATCCAGATTTGG+TGG | 0.568603 | 1_1:-17473713 | Msa0011590:CDS |
| AAAGCCGGAAGATGCTAAAG+TGG | 0.573555 | 1_1:-17479203 | Msa0011590:intron |
| CTATCCGATGATGGAGCTCA+TGG | 0.576560 | 1_1:-17475464 | Msa0011590:CDS |
| AATGGAAAACCACTCAAGCT+GGG | 0.579058 | 1_1:-17474379 | Msa0011590:CDS |
| AATTGAATGTTGTACCTACT+CGG | 0.580618 | 1_1:+17478952 | None:intergenic |
| CCAGAACTGAAGATGCAGAA+TGG | 0.580669 | 1_1:+17474915 | None:intergenic |
| CTAACCCTTCCCAGCTTGAG+TGG | 0.581738 | 1_1:+17474370 | None:intergenic |
| TTTAATTACAGGACCAGTTG+GGG | 0.582149 | 1_1:-17478325 | Msa0011590:intron |
| TTCGGCGTTGACTTCTTCTG+TGG | 0.585218 | 1_1:+17474990 | None:intergenic |
| TGTTAAAGAAGCTAAAGAGA+TGG | 0.585445 | 1_1:-17475513 | Msa0011590:CDS |
| AATTAGGGTTCAATTTGGGG+TGG | 0.591105 | 1_1:+17480865 | None:intergenic |
| GGGGTGGAATTGAGAAATTG+GGG | 0.592495 | 1_1:+17480881 | None:intergenic |
| AACTCTGAGGGGAAACTCCA+GGG | 0.593785 | 1_1:+17474444 | None:intergenic |
| GAGGATTTCCGCATTTCACA+AGG | 0.594146 | 1_1:-17472771 | Msa0011590:CDS |
| ACGACCGAAGAAACGATAAG+AGG | 0.596585 | 1_1:-17473019 | Msa0011590:intron |
| ACTTAGATGTTCAGTGTATG+GGG | 0.597797 | 1_1:-17474311 | Msa0011590:CDS |
| AAATCTTGATTCTGGAAACC+AGG | 0.600916 | 1_1:+17473882 | None:intergenic |
| TGCCAAGAGGATGTTACCGA+GGG | 0.601703 | 1_1:+17474186 | None:intergenic |
| ACTTTGTTGATGATTGGCAT+AGG | 0.602413 | 1_1:-17472395 | Msa0011590:three_prime_UTR |
| AGAGCTTTGCATCAATGAGA+AGG | 0.605568 | 1_1:-17474340 | Msa0011590:CDS |
| AAGACGTTATCAAAACAGAA+AGG | 0.607322 | 1_1:-17478463 | Msa0011590:CDS |
| ACCACCAAATCTGGATCTTG+AGG | 0.607687 | 1_1:+17473712 | None:intergenic |
| GCTGAACATTATTTGAGCAG+AGG | 0.607924 | 1_1:-17472615 | Msa0011590:CDS |
| TCTACAGTTGTGTCTTCTGG+TGG | 0.608964 | 1_1:-17473820 | Msa0011590:CDS |
| TGATGATCTTGCAGGAACAA+TGG | 0.609492 | 1_1:+17472860 | None:intergenic |
| TTACTCAGAGAAACATCTAC+CGG | 0.609977 | 1_1:+17473784 | None:intergenic |
| TCGGTGAATTGAGATCAGTT+GGG | 0.610526 | 1_1:+17480825 | None:intergenic |
| AGGACCATGAGCTCCATCAT+CGG | 0.610961 | 1_1:+17475460 | None:intergenic |
| AATTAGTTTGGATAACTCTG+AGG | 0.615241 | 1_1:+17474431 | None:intergenic |
| CGCAACTGTGTATAACCCGA+TGG | 0.615930 | 1_1:-17473620 | Msa0011590:CDS |
| TCGATACAGTGCAAAATGTG+TGG | 0.616276 | 1_1:-17473531 | Msa0011590:CDS |
| ATCTTGCAGGAACAATGGAT+CGG | 0.620287 | 1_1:+17472865 | None:intergenic |
| AAAACCACTCAAGCTGGGAA+GGG | 0.622887 | 1_1:-17474374 | Msa0011590:CDS |
| TCTGCTGCTAATAGGGAGAG+TGG | 0.623398 | 1_1:-17480075 | Msa0011590:CDS |
| TGAAGCAACTCATCTGGCAA+TGG | 0.623526 | 1_1:+17475122 | None:intergenic |
| TTCTGGACTACAATCTACAA+TGG | 0.627792 | 1_1:+17479429 | None:intergenic |
| TACTACAAAAGATGATACCC+TGG | 0.629872 | 1_1:-17474461 | Msa0011590:CDS |
| CATGCCAGCTCAGAACAGAC+AGG | 0.630314 | 1_1:-17473481 | Msa0011590:CDS |
| TGGTTTGGAAGATTCAGAGG+TGG | 0.632543 | 1_1:-17473974 | Msa0011590:CDS |
| CAAACCAACAAAAGCCTCAG+AGG | 0.633080 | 1_1:-17478667 | Msa0011590:intron |
| TTCACAGTATGCTGCTAACG+TGG | 0.634312 | 1_1:-17472526 | Msa0011590:CDS |
| ACCTTACACAACGAAAAGAA+CGG | 0.635504 | 1_1:+17480141 | None:intergenic |
| TTCAAAAGATGTTAGCGAGG+AGG | 0.638177 | 1_1:-17478367 | Msa0011590:CDS |
| GGAGGCGAAATTGTCAGCTG+AGG | 0.639126 | 1_1:-17480412 | Msa0011590:intron |
| GCCAAGCATATAGAAGAAGT+GGG | 0.639158 | 1_1:-17473185 | Msa0011590:CDS |
| ACAACAAGGATCATGCACTC+CGG | 0.639565 | 1_1:-17480777 | Msa0011590:CDS |
| AAACATCTACCGGACAAGCA+AGG | 0.647550 | 1_1:+17473794 | None:intergenic |
| ATGCTTGTGCCCAAGAACAA+GGG | 0.649836 | 1_1:-17477601 | Msa0011590:CDS |
| CAGATGCTGAGCCACCGAGT+AGG | 0.651091 | 1_1:-17478966 | Msa0011590:intron |
| GATATATCATTGTTGTGTGA+AGG | 0.651596 | 1_1:-17472570 | Msa0011590:CDS |
| TTGCCAAGAGGATGTTACCG+AGG | 0.651979 | 1_1:+17474185 | None:intergenic |
| ATGAAGGCAGTACTGTATCA+GGG | 0.653597 | 1_1:-17479011 | Msa0011590:CDS |
| AAGTTGTTAAGCTTGCTAGT+GGG | 0.656691 | 1_1:-17473450 | Msa0011590:CDS |
| GTTGGGTTGTTCATGGTGTG+AGG | 0.656834 | 1_1:+17480842 | None:intergenic |
| TGTTGATTAAATTACCCTGG+AGG | 0.656927 | 1_1:+17480700 | None:intergenic |
| GATGGAGCTCATGGTCCTGG+TGG | 0.657711 | 1_1:-17475455 | Msa0011590:CDS |
| TGCTTCAAAAGATGTTAGCG+AGG | 0.658230 | 1_1:-17478370 | Msa0011590:CDS |
| TTGTCAACAGCTCAATACAT+CGG | 0.659863 | 1_1:-17475901 | Msa0011590:intron |
| TGGACTACAATCTACAATGG+TGG | 0.661598 | 1_1:+17479432 | None:intergenic |
| GATCAAACTGACATACCAGA+TGG | 0.670055 | 1_1:-17478426 | Msa0011590:CDS |
| ATACAGTGCAAAATGTGTGG+AGG | 0.671272 | 1_1:-17473528 | Msa0011590:CDS |
| CTAGAAATGTCAGACCTCTG+AGG | 0.672592 | 1_1:+17478653 | None:intergenic |
| AAACGTCTCTTCATCAGACA+GGG | 0.675440 | 1_1:+17473268 | None:intergenic |
| ATTGACTTTCAAACTCACCA+CGG | 0.678678 | 1_1:+17474244 | None:intergenic |
| TGATGATCATAATAATCACA+GGG | 0.681684 | 1_1:+17472349 | None:intergenic |
| TCCTGCAAGATCATCAACAA+CGG | 0.691180 | 1_1:-17472853 | Msa0011590:CDS |
| TTTATCATCTGAATAAGACA+AGG | 0.711090 | 1_1:+17479306 | None:intergenic |
| GAGAGTGGAAGAACTAACTG+TGG | 0.712518 | 1_1:-17480060 | Msa0011590:CDS |
| TTAGTTTGGATAACTCTGAG+GGG | 0.713297 | 1_1:+17474433 | None:intergenic |
| ATTAGATCTATTCCAGACCG+TGG | 0.713490 | 1_1:-17474261 | Msa0011590:CDS |
| ATCATGTGTTCTGACTGTGT+AGG | 0.728555 | 1_1:+17479280 | None:intergenic |
| ACTGACATACCAGATGGTGA+TGG | 0.730638 | 1_1:-17478420 | Msa0011590:CDS |
| GTAGCTGAACAACAACAACA+AGG | 0.737627 | 1_1:-17480791 | Msa0011590:CDS |
| TGAATGTTGTACCTACTCGG+TGG | 0.740553 | 1_1:+17478955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTATGATAATTATTT+AGG | - | chr1_1:17474646-17474665 | Msa0011590:intron | 10.0% |
| !! | AAAATTTCAGTAATTTAATT+GGG | - | chr1_1:17475145-17475164 | Msa0011590:CDS | 10.0% |
| !!! | TTTTAGATTTTATACAAAAA+CGG | + | chr1_1:17475380-17475399 | None:intergenic | 10.0% |
| !!! | CTTTATTTATAAATATGTTT+TGG | - | chr1_1:17475631-17475650 | Msa0011590:intron | 10.0% |
| !!! | TTTTAAAAAATTGACTATTT+GGG | + | chr1_1:17475724-17475743 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAAGCATATATA+TGG | - | chr1_1:17475733-17475752 | Msa0011590:intron | 10.0% |
| !!! | ATATTATTATCATTTTAAGA+TGG | - | chr1_1:17476590-17476609 | Msa0011590:intron | 10.0% |
| !!! | TTTTTTTAAATTAGGTAAAA+AGG | - | chr1_1:17477998-17478017 | Msa0011590:intron | 10.0% |
| !!! | GTTAAAAAAATAGACTTTTT+CGG | - | chr1_1:17472827-17472846 | Msa0011590:CDS | 15.0% |
| !!! | TTAAAAAAATAGACTTTTTC+GGG | - | chr1_1:17472828-17472847 | Msa0011590:CDS | 15.0% |
| !! | AGAAAGTTATCAAAATTTAA+GGG | + | chr1_1:17473823-17473842 | None:intergenic | 15.0% |
| !! | AAGAAAGTTATCAAAATTTA+AGG | + | chr1_1:17473824-17473843 | None:intergenic | 15.0% |
| !! | ATTGATCATTTAAAAGAAAA+TGG | - | chr1_1:17474319-17474338 | Msa0011590:CDS | 15.0% |
| !! | GAAAATTTCAGTAATTTAAT+TGG | - | chr1_1:17475144-17475163 | Msa0011590:CDS | 15.0% |
| !!! | TATAAATATGTTTTGGTTAT+TGG | - | chr1_1:17475638-17475657 | Msa0011590:intron | 15.0% |
| !!! | CTTTTAAAAAATTGACTATT+TGG | + | chr1_1:17475725-17475744 | None:intergenic | 15.0% |
| !!! | ATTTAAACAATGAAATCTTT+TGG | + | chr1_1:17476125-17476144 | None:intergenic | 15.0% |
| !! | GATTTCATTGTTTAAATATT+TGG | - | chr1_1:17476128-17476147 | Msa0011590:intron | 15.0% |
| !!! | TGTTAACAATATTTTAAGTT+TGG | + | chr1_1:17476234-17476253 | None:intergenic | 15.0% |
| !! | ACTTAAAATATTGTTAACAT+TGG | - | chr1_1:17476235-17476254 | Msa0011590:intron | 15.0% |
| !! | AAAATAACAATTTGAAGATA+GGG | + | chr1_1:17478431-17478450 | None:intergenic | 15.0% |
| !! | AAAAATAACAATTTGAAGAT+AGG | + | chr1_1:17478432-17478451 | None:intergenic | 15.0% |
| !!! | TTGTTATTTTTTTTTAACGA+CGG | - | chr1_1:17478441-17478460 | Msa0011590:CDS | 15.0% |
| !!! | TTAGATTTCATTTGATAATA+GGG | - | chr1_1:17480718-17480737 | Msa0011590:CDS | 15.0% |
| !! | AAAATATGTTAAAGAATGAA+TGG | + | chr1_1:17480744-17480763 | None:intergenic | 15.0% |
| !! | TTTGATATATATTGGGATTT+GGG | + | chr1_1:17472287-17472306 | None:intergenic | 20.0% |
| !!! | TTTTGATATATATTGGGATT+TGG | + | chr1_1:17472288-17472307 | None:intergenic | 20.0% |
| !!! | TAAAAAAATAGACTTTTTCG+GGG | - | chr1_1:17472829-17472848 | Msa0011590:CDS | 20.0% |
| !!! | TTTTGCGAAAATATTTCTAA+GGG | - | chr1_1:17472859-17472878 | Msa0011590:CDS | 20.0% |
| !! | GAAAAGAAATTTAAGGATTT+GGG | - | chr1_1:17473073-17473092 | Msa0011590:CDS | 20.0% |
| !! | ATATCTTCAAATACATGAAT+AGG | + | chr1_1:17473157-17473176 | None:intergenic | 20.0% |
| !! | TCATGTATTTGAAGATATTA+CGG | - | chr1_1:17473159-17473178 | Msa0011590:CDS | 20.0% |
| !!! | GAATTTAAAACCAATAAAGT+GGG | + | chr1_1:17473642-17473661 | None:intergenic | 20.0% |
| !!! | AGAATTTAAAACCAATAAAG+TGG | + | chr1_1:17473643-17473662 | None:intergenic | 20.0% |
| !!! | AAGTTCAAAATTTTCTGTTA+TGG | - | chr1_1:17473783-17473802 | Msa0011590:CDS | 20.0% |
| !!! | AATTTTGATAACTTTCTTAG+TGG | - | chr1_1:17473826-17473845 | Msa0011590:CDS | 20.0% |
| !!! | TTTTATTAGAAAAACAAGCA+AGG | + | chr1_1:17474354-17474373 | None:intergenic | 20.0% |
| !! | ATCATAAAACAAGAAAAGTA+TGG | + | chr1_1:17474638-17474657 | None:intergenic | 20.0% |
| !! | ATGATAATTATTTAGGTATG+CGG | - | chr1_1:17474653-17474672 | Msa0011590:intron | 20.0% |
| !! | AATTAAAAGAACATTCTTCA+GGG | + | chr1_1:17474852-17474871 | None:intergenic | 20.0% |
| !! | TAATTAAAAGAACATTCTTC+AGG | + | chr1_1:17474853-17474872 | None:intergenic | 20.0% |
| !!! | AAGAATGTTCTTTTAATTAC+AGG | - | chr1_1:17474854-17474873 | Msa0011590:intron | 20.0% |
| !! | AAGTATATTGAAAAATGATG+TGG | - | chr1_1:17477131-17477150 | Msa0011590:intron | 20.0% |
| !! | TGTAATTTCAGTTATCAATT+TGG | - | chr1_1:17477241-17477260 | Msa0011590:intron | 20.0% |
| !! | TAAAATTGAATTAAGGAAGA+AGG | + | chr1_1:17477504-17477523 | None:intergenic | 20.0% |
| !!! | TCAAACTTTAATTTTAGTTG+AGG | - | chr1_1:17477809-17477828 | Msa0011590:intron | 20.0% |
| !!! | CGTGTTCATTTTTTTAAATT+AGG | - | chr1_1:17477990-17478009 | Msa0011590:intron | 20.0% |
| !! | ATAAATTTCTCAAGTAAAAG+AGG | + | chr1_1:17478226-17478245 | None:intergenic | 20.0% |
| !!! | CTTTGCTATATTTTTTATTC+TGG | + | chr1_1:17478303-17478322 | None:intergenic | 20.0% |
| !! | CAGAATAAAAAATATAGCAA+AGG | - | chr1_1:17478301-17478320 | Msa0011590:intron | 20.0% |
| !! | ACAATATCTTCATCTTAAAA+GGG | + | chr1_1:17478339-17478358 | None:intergenic | 20.0% |
| !! | AACAATATCTTCATCTTAAA+AGG | + | chr1_1:17478340-17478359 | None:intergenic | 20.0% |
| !! | TTGATTCAATAGAAAGTTAA+GGG | + | chr1_1:17479158-17479177 | None:intergenic | 20.0% |
| !! | TTTGATTCAATAGAAAGTTA+AGG | + | chr1_1:17479159-17479178 | None:intergenic | 20.0% |
| !! | TTGAAGAAAAAACTTTATCA+AGG | + | chr1_1:17479833-17479852 | None:intergenic | 20.0% |
| !!! | AAGAGGTATATAAATAAACA+TGG | - | chr1_1:17480188-17480207 | Msa0011590:intron | 20.0% |
| !! | GTTAACAAGAAAATTCTTAA+TGG | - | chr1_1:17480523-17480542 | Msa0011590:intron | 20.0% |
| !!! | CTTAGATTTCATTTGATAAT+AGG | - | chr1_1:17480717-17480736 | Msa0011590:CDS | 20.0% |
| !! | TGGGGTTTTTGATATATATT+GGG | + | chr1_1:17472294-17472313 | None:intergenic | 25.0% |
| !! | TTGGGGTTTTTGATATATAT+TGG | + | chr1_1:17472295-17472314 | None:intergenic | 25.0% |
| !!! | TGTTAATTTTAGCTGTAATG+TGG | - | chr1_1:17472551-17472570 | Msa0011590:CDS | 25.0% |
| ! | AAAGAGAATTGTGTAATTGA+GGG | - | chr1_1:17472637-17472656 | Msa0011590:intron | 25.0% |
| !!! | GTTTTGCGAAAATATTTCTA+AGG | - | chr1_1:17472858-17472877 | Msa0011590:CDS | 25.0% |
| !! | GAGTTTCTTTTATCTCTAAT+TGG | - | chr1_1:17472985-17473004 | Msa0011590:intron | 25.0% |
| !! | CTTTTATCTCTAATTGGATT+AGG | - | chr1_1:17472991-17473010 | Msa0011590:intron | 25.0% |
| ! | TAAGGTGGAAAAGAAATTTA+AGG | - | chr1_1:17473066-17473085 | Msa0011590:CDS | 25.0% |
| ! | GGAAAAGAAATTTAAGGATT+TGG | - | chr1_1:17473072-17473091 | Msa0011590:CDS | 25.0% |
| ! | GTTCTTTCTATGATTTAATG+TGG | - | chr1_1:17473197-17473216 | Msa0011590:CDS | 25.0% |
| !! | TATATGCATACCTTTTGTAA+TGG | - | chr1_1:17473256-17473275 | Msa0011590:CDS | 25.0% |
| !! | ATATGCATACCTTTTGTAAT+GGG | - | chr1_1:17473257-17473276 | Msa0011590:CDS | 25.0% |
| !! | AGTAAACAATTTGCTTTAGA+AGG | - | chr1_1:17473303-17473322 | Msa0011590:intron | 25.0% |
| !! | TGATTTTCTCAAATTACTAG+CGG | + | chr1_1:17473434-17473453 | None:intergenic | 25.0% |
| !! | ACAGAAAATTTTGAACTTTC+TGG | + | chr1_1:17473781-17473800 | None:intergenic | 25.0% |
| !! | TTCAAAATTTTCTGTTATGG+AGG | - | chr1_1:17473786-17473805 | Msa0011590:CDS | 25.0% |
| !! | TCAAAATTTTCTGTTATGGA+GGG | - | chr1_1:17473787-17473806 | Msa0011590:CDS | 25.0% |
| ! | TTTATCATCTGAATAAGACA+AGG | + | chr1_1:17473887-17473906 | None:intergenic | 25.0% |
| ! | TGTTTCCAAAAATTATTACC+AGG | - | chr1_1:17474144-17474163 | Msa0011590:CDS | 25.0% |
| !! | AAATTTATTTCCTGATAGTG+AGG | - | chr1_1:17474414-17474433 | Msa0011590:CDS | 25.0% |
| ! | GATGATCATACATAGTTAAA+TGG | + | chr1_1:17475115-17475134 | None:intergenic | 25.0% |
| !!! | GACAATTATCTTTGTTTTCT+TGG | - | chr1_1:17475188-17475207 | Msa0011590:intron | 25.0% |
| !!! | AAAATTTTAGAAAGCACAAG+CGG | + | chr1_1:17475257-17475276 | None:intergenic | 25.0% |
| !!! | TGTGCTTTCTAAAATTTTCT+TGG | - | chr1_1:17475259-17475278 | Msa0011590:intron | 25.0% |
| !! | TTCAAGACTTACAATTTTCA+TGG | + | chr1_1:17475338-17475357 | None:intergenic | 25.0% |
| ! | AAATTGTAAGTCTTGAATCT+TGG | - | chr1_1:17475341-17475360 | Msa0011590:CDS | 25.0% |
| !! | AACTTTAAAAGGGCAAAAAT+GGG | + | chr1_1:17475406-17475425 | None:intergenic | 25.0% |
| !! | AAACTTTAAAAGGGCAAAAA+TGG | + | chr1_1:17475407-17475426 | None:intergenic | 25.0% |
| !! | ATTGACTATTTGGGATTAAT+AGG | + | chr1_1:17475715-17475734 | None:intergenic | 25.0% |
| ! | TAGGAATTAATTAGCCAAAT+TGG | - | chr1_1:17475767-17475786 | Msa0011590:intron | 25.0% |
| ! | AGGAATTAATTAGCCAAATT+GGG | - | chr1_1:17475768-17475787 | Msa0011590:intron | 25.0% |
| ! | TAAACTCCGAAATATAGAAA+AGG | + | chr1_1:17475821-17475840 | None:intergenic | 25.0% |
| ! | GTCTATGTATACTTCATATT+AGG | + | chr1_1:17475856-17475875 | None:intergenic | 25.0% |
| !!! | ATGAGAAGTTATTTCTAGTT+AGG | + | chr1_1:17476082-17476101 | None:intergenic | 25.0% |
| ! | AAATAGGATTCTCTTCTAAA+AGG | + | chr1_1:17476197-17476216 | None:intergenic | 25.0% |
| ! | GGATTGTTAAGATTTCAAAT+AGG | + | chr1_1:17476213-17476232 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAGTCACAAAA+TGG | + | chr1_1:17476338-17476357 | None:intergenic | 25.0% |
| !!! | GTTAATTTTGAAGTTGATGA+AGG | + | chr1_1:17476379-17476398 | None:intergenic | 25.0% |
| !!! | ATTTTAAGATGGTGAAAACT+AGG | - | chr1_1:17476601-17476620 | Msa0011590:intron | 25.0% |
| ! | TAATGAGCTGGATAAAAATA+TGG | - | chr1_1:17476767-17476786 | Msa0011590:intron | 25.0% |
| ! | GTTATTAAGAAAGTAAGTGA+TGG | + | chr1_1:17477024-17477043 | None:intergenic | 25.0% |
| ! | TATACTGATGTTTATAGGAA+AGG | + | chr1_1:17477057-17477076 | None:intergenic | 25.0% |
| !!! | GTTGGAAATCATTACTTTTT+TGG | - | chr1_1:17477082-17477101 | Msa0011590:intron | 25.0% |
| ! | TTTCAATATACTTCCTATTG+AGG | + | chr1_1:17477124-17477143 | None:intergenic | 25.0% |
| !!! | TTTTTAGAAAGAATGCTCAT+AGG | + | chr1_1:17477173-17477192 | None:intergenic | 25.0% |
| ! | AATTTGGCCATAACTATTAA+AGG | - | chr1_1:17477257-17477276 | Msa0011590:intron | 25.0% |
| ! | GAGATAACCTTTAATAGTTA+TGG | + | chr1_1:17477267-17477286 | None:intergenic | 25.0% |
| !! | CTTAAGATTTAAGACATCTA+TGG | + | chr1_1:17477421-17477440 | None:intergenic | 25.0% |
| !! | AAGCAATAAGCTTTTAATGT+TGG | - | chr1_1:17477438-17477457 | Msa0011590:intron | 25.0% |
| !! | TCTTTAGCTTCTTTAACATT+AGG | + | chr1_1:17477675-17477694 | None:intergenic | 25.0% |
| !!! | TTTAATTTTAGTTGAGGATG+TGG | - | chr1_1:17477815-17477834 | Msa0011590:intron | 25.0% |
| ! | TTTAAATTAGGTAAAAAGGC+TGG | - | chr1_1:17478002-17478021 | Msa0011590:intron | 25.0% |
| ! | TGTAGTCTACAAAAGTTATT+TGG | + | chr1_1:17478032-17478051 | None:intergenic | 25.0% |
| ! | CAGAAGATTTATCGAATATA+TGG | + | chr1_1:17478373-17478392 | None:intergenic | 25.0% |
| ! | ATGCATTTATATGACATACA+AGG | - | chr1_1:17478507-17478526 | Msa0011590:CDS | 25.0% |
| ! | ACATCACTACAAATTTACTT+TGG | + | chr1_1:17479036-17479055 | None:intergenic | 25.0% |
| ! | TCTACAGAATGTCTATTATT+TGG | + | chr1_1:17479082-17479101 | None:intergenic | 25.0% |
| !!! | AACTTACACATTGTTTTTGT+TGG | + | chr1_1:17479810-17479829 | None:intergenic | 25.0% |
| ! | TGTTCAGCATATTATCATAA+CGG | + | chr1_1:17479875-17479894 | None:intergenic | 25.0% |
| !! | ACTACAAATATTATGGCTTT+TGG | - | chr1_1:17480083-17480102 | Msa0011590:CDS | 25.0% |
| !! | CTACAAATATTATGGCTTTT+GGG | - | chr1_1:17480084-17480103 | Msa0011590:CDS | 25.0% |
| !! | CTATAGTAAAGAGATTTTAG+AGG | - | chr1_1:17480145-17480164 | Msa0011590:CDS | 25.0% |
| !!! | AATCCTCTGAAATTGAAATT+TGG | + | chr1_1:17480406-17480425 | None:intergenic | 25.0% |
| !! | TTTTCTTAATGTTTCAATGC+AGG | - | chr1_1:17480546-17480565 | Msa0011590:intron | 25.0% |
| ! | TGATGATCATAATAATCACA+GGG | + | chr1_1:17480844-17480863 | None:intergenic | 25.0% |
| ! | ATGATGATCATAATAATCAC+AGG | + | chr1_1:17480845-17480864 | None:intergenic | 25.0% |
| ! | TGTGATTATTATGATCATCA+TGG | - | chr1_1:17480844-17480863 | Msa0011590:exon | 25.0% |
| ! | AAATTAAATAGAGCAGCAAT+AGG | - | chr1_1:17480878-17480897 | Msa0011590:five_prime_UTR | 25.0% |
| !! | TTGTGTTGATTAAATTACCC+TGG | + | chr1_1:17472496-17472515 | None:intergenic | 30.0% |
| !! | GTGAATTGAATTTTGAGAGT+TGG | - | chr1_1:17472614-17472633 | Msa0011590:CDS | 30.0% |
| GAAAGAGAATTGTGTAATTG+AGG | - | chr1_1:17472636-17472655 | Msa0011590:intron | 30.0% | |
| AATAATACGCCGAAGAAAAA+CGG | - | chr1_1:17472692-17472711 | Msa0011590:intron | 30.0% | |
| ! | AATTGGATTAGGAAAATTCG+AGG | - | chr1_1:17473002-17473021 | Msa0011590:intron | 30.0% |
| ! | TATGCATACCTTTTGTAATG+GGG | - | chr1_1:17473258-17473277 | Msa0011590:CDS | 30.0% |
| !! | TTGCTTTAGAAGGTAAAGTT+AGG | - | chr1_1:17473313-17473332 | Msa0011590:intron | 30.0% |
| AAGGTAAAGTTAGGAATGTT+AGG | - | chr1_1:17473322-17473341 | Msa0011590:intron | 30.0% | |
| ATGTACATGCATAACAAACA+CGG | - | chr1_1:17473579-17473598 | Msa0011590:CDS | 30.0% | |
| CTCACTTAAAGTGTAGAATA+AGG | + | chr1_1:17473613-17473632 | None:intergenic | 30.0% | |
| ! | TCCTGCATTAGCAAATTTTA+TGG | + | chr1_1:17473691-17473710 | None:intergenic | 30.0% |
| ! | AATCATGGAAACTAGTTTAG+AGG | - | chr1_1:17474080-17474099 | Msa0011590:CDS | 30.0% |
| ! | ATCATGGAAACTAGTTTAGA+GGG | - | chr1_1:17474081-17474100 | Msa0011590:CDS | 30.0% |
| ! | CAAGTCCTGGTAATAATTTT+TGG | + | chr1_1:17474152-17474171 | None:intergenic | 30.0% |
| CAAAAATTATTACCAGGACT+TGG | - | chr1_1:17474150-17474169 | Msa0011590:CDS | 30.0% | |
| AATTGAATGTTGTACCTACT+CGG | + | chr1_1:17474241-17474260 | None:intergenic | 30.0% | |
| ! | TTTGCTAGCTAATTTTTGCA+CGG | + | chr1_1:17474397-17474416 | None:intergenic | 30.0% |
| CATTCTGCAATATGATACAA+GGG | + | chr1_1:17474444-17474463 | None:intergenic | 30.0% | |
| TCATTCTGCAATATGATACA+AGG | + | chr1_1:17474445-17474464 | None:intergenic | 30.0% | |
| ! | AAACAAGAAAAGTATGGTTC+AGG | + | chr1_1:17474632-17474651 | None:intergenic | 30.0% |
| AAGACGTTATCAAAACAGAA+AGG | - | chr1_1:17474727-17474746 | Msa0011590:intron | 30.0% | |
| !! | TTTTAATTACAGGACCAGTT+GGG | - | chr1_1:17474864-17474883 | Msa0011590:intron | 30.0% |
| AATGATTCTTAAAGTGCAGA+AGG | + | chr1_1:17474995-17475014 | None:intergenic | 30.0% | |
| GATCATACATAGTTAAATGG+AGG | + | chr1_1:17475112-17475131 | None:intergenic | 30.0% | |
| TATTATGCATAATTGAGCAG+AGG | + | chr1_1:17475310-17475329 | None:intergenic | 30.0% | |
| ! | CATGGCAAGAAACTTTAAAA+GGG | + | chr1_1:17475416-17475435 | None:intergenic | 30.0% |
| TACACAGAAAACATGAATCT+GGG | + | chr1_1:17475491-17475510 | None:intergenic | 30.0% | |
| ATACACAGAAAACATGAATC+TGG | + | chr1_1:17475492-17475511 | None:intergenic | 30.0% | |
| GCTTGTTCATAACTTCATAT+TGG | - | chr1_1:17475514-17475533 | Msa0011590:CDS | 30.0% | |
| ! | AGCTTGCCTTTTCTATATTT+CGG | - | chr1_1:17475812-17475831 | Msa0011590:intron | 30.0% |
| ACTTCATATTAGGCAAGAAA+CGG | + | chr1_1:17475846-17475865 | None:intergenic | 30.0% | |
| AGCTAAATACCTAAGTATGA+GGG | + | chr1_1:17475966-17475985 | None:intergenic | 30.0% | |
| TAGCTAAATACCTAAGTATG+AGG | + | chr1_1:17475967-17475986 | None:intergenic | 30.0% | |
| TCTACTTAAGGATGATCTAA+AGG | + | chr1_1:17476356-17476375 | None:intergenic | 30.0% | |
| ! | TAGACTTCCAATTTTCAGAA+AGG | + | chr1_1:17476407-17476426 | None:intergenic | 30.0% |
| AATAGCAACTTACTACAACT+AGG | + | chr1_1:17476479-17476498 | None:intergenic | 30.0% | |
| !!! | TGTAGATTTTGAAGTAAGGA+GGG | - | chr1_1:17476656-17476675 | Msa0011590:intron | 30.0% |
| ACTCAAAGTTGAAAACAAAG+TGG | + | chr1_1:17476921-17476940 | None:intergenic | 30.0% | |
| ACTGCTATACTGATGTTTAT+AGG | + | chr1_1:17477062-17477081 | None:intergenic | 30.0% | |
| AGATTCGTAAAAACAGAGAA+AGG | + | chr1_1:17477222-17477241 | None:intergenic | 30.0% | |
| ! | AATAAGCTTTTAATGTTGGC+TGG | - | chr1_1:17477442-17477461 | Msa0011590:intron | 30.0% |
| TGTTAAAGAAGCTAAAGAGA+TGG | - | chr1_1:17477677-17477696 | Msa0011590:intron | 30.0% | |
| ! | TCCATTTTCCCTTCTTTTAA+GGG | + | chr1_1:17478130-17478149 | None:intergenic | 30.0% |
| ! | TTCCATTTTCCCTTCTTTTA+AGG | + | chr1_1:17478131-17478150 | None:intergenic | 30.0% |
| AGTGAAATTTATGTCTTCTG+TGG | - | chr1_1:17478159-17478178 | Msa0011590:intron | 30.0% | |
| TTTCTCAAGTAAAAGAGGTT+CGG | + | chr1_1:17478221-17478240 | None:intergenic | 30.0% | |
| ! | CATAAACCACAACATTTTGT+AGG | + | chr1_1:17478467-17478486 | None:intergenic | 30.0% |
| ! | AACCATAACTCTTCAACTTT+TGG | - | chr1_1:17478531-17478550 | Msa0011590:intron | 30.0% |
| ATCCAAAAGTTGAAGAGTTA+TGG | + | chr1_1:17478536-17478555 | None:intergenic | 30.0% | |
| ! | AAGAAAGTGCAGACATTATA+TGG | - | chr1_1:17478671-17478690 | Msa0011590:CDS | 30.0% |
| ! | ATTAGTTTGGATAACTCTGA+GGG | + | chr1_1:17478761-17478780 | None:intergenic | 30.0% |
| ! | AATTAGTTTGGATAACTCTG+AGG | + | chr1_1:17478762-17478781 | None:intergenic | 30.0% |
| TAACTTAGATGTTCAGTGTA+TGG | - | chr1_1:17478877-17478896 | Msa0011590:intron | 30.0% | |
| AACTTAGATGTTCAGTGTAT+GGG | - | chr1_1:17478878-17478897 | Msa0011590:intron | 30.0% | |
| TCTGAGTTATATAGTTGTTC+TGG | - | chr1_1:17478980-17478999 | Msa0011590:CDS | 30.0% | |
| ATAAATCACTTGATATGTCC+TGG | - | chr1_1:17479290-17479309 | Msa0011590:CDS | 30.0% | |
| !! | TCTATTTTGAATTGCAGTCT+CGG | + | chr1_1:17479338-17479357 | None:intergenic | 30.0% |
| ATTTCTCTTGGAGAAGATTT+GGG | + | chr1_1:17479517-17479536 | None:intergenic | 30.0% | |
| TATTTCTCTTGGAGAAGATT+TGG | + | chr1_1:17479518-17479537 | None:intergenic | 30.0% | |
| GTTCAGCATATTATCATAAC+GGG | + | chr1_1:17479874-17479893 | None:intergenic | 30.0% | |
| GGCTTCTACTACAAATATTA+TGG | - | chr1_1:17480076-17480095 | Msa0011590:CDS | 30.0% | |
| TATACCTCTTATCGTTTCTT+CGG | + | chr1_1:17480178-17480197 | None:intergenic | 30.0% | |
| ! | TTTTAACACCTTGTGAAATG+CGG | + | chr1_1:17480430-17480449 | None:intergenic | 30.0% |
| TTAAAAAGATGAGGAAAGGA+AGG | - | chr1_1:17480444-17480463 | Msa0011590:CDS | 30.0% | |
| TTATTTGAGCAGAGGTAAAA+TGG | - | chr1_1:17480583-17480602 | Msa0011590:intron | 30.0% | |
| GATATATCATTGTTGTGTGA+AGG | - | chr1_1:17480620-17480639 | Msa0011590:intron | 30.0% | |
| TTATTATGATCATCATGGCT+CGG | - | chr1_1:17480849-17480868 | Msa0011590:exon | 30.0% | |
| AGGAATTAGGGTTCAATTTG+GGG | + | chr1_1:17472331-17472350 | None:intergenic | 35.0% | |
| GAGGAATTAGGGTTCAATTT+GGG | + | chr1_1:17472332-17472351 | None:intergenic | 35.0% | |
| TGAGGAATTAGGGTTCAATT+TGG | + | chr1_1:17472333-17472352 | None:intergenic | 35.0% | |
| ! | TGTTGATTAAATTACCCTGG+AGG | + | chr1_1:17472493-17472512 | None:intergenic | 35.0% |
| ATAATACGCCGAAGAAAAAC+GGG | - | chr1_1:17472693-17472712 | Msa0011590:intron | 35.0% | |
| ACTGTGAGTTTGTGTAAGTT+GGG | - | chr1_1:17472921-17472940 | Msa0011590:intron | 35.0% | |
| ACCTTACACAACGAAAAGAA+CGG | + | chr1_1:17473052-17473071 | None:intergenic | 35.0% | |
| ! | TGGTAGCTTGATTTGAGATA+AGG | - | chr1_1:17473217-17473236 | Msa0011590:CDS | 35.0% |
| ! | GCTTGATTTGAGATAAGGTT+AGG | - | chr1_1:17473222-17473241 | Msa0011590:CDS | 35.0% |
| ACTCAAAACCCCATTACAAA+AGG | + | chr1_1:17473269-17473288 | None:intergenic | 35.0% | |
| ! | ATCAGTTGATGTATGAAGCA+CGG | - | chr1_1:17473367-17473386 | Msa0011590:intron | 35.0% |
| TATATGTGTCAGTGTTGTGT+TGG | - | chr1_1:17473470-17473489 | Msa0011590:CDS | 35.0% | |
| CATCATCAACTTATGAAGCA+CGG | + | chr1_1:17473549-17473568 | None:intergenic | 35.0% | |
| !! | GCCATAAAATTTGCTAATGC+AGG | - | chr1_1:17473687-17473706 | Msa0011590:CDS | 35.0% |
| ATGATACTTCATCTCTTGAC+TGG | - | chr1_1:17473710-17473729 | Msa0011590:CDS | 35.0% | |
| ! | TGGAGTGATTGGACATTTTT+GGG | - | chr1_1:17473730-17473749 | Msa0011590:CDS | 35.0% |
| TTCTGGACTACAATCTACAA+TGG | + | chr1_1:17473764-17473783 | None:intergenic | 35.0% | |
| ATTACCAACAGTTGTGCAAA+GGG | + | chr1_1:17474063-17474082 | None:intergenic | 35.0% | |
| ! | TCATGGAAACTAGTTTAGAG+GGG | - | chr1_1:17474082-17474101 | Msa0011590:CDS | 35.0% |
| AAATCATTGACACAAAGCTG+AGG | + | chr1_1:17474116-17474135 | None:intergenic | 35.0% | |
| AAATTATTACCAGGACTTGG+AGG | - | chr1_1:17474153-17474172 | Msa0011590:CDS | 35.0% | |
| GAAACTGAGTGAAATTAGTC+AGG | + | chr1_1:17474274-17474293 | None:intergenic | 35.0% | |
| TAATTTCACTCAGTTTCCCT+CGG | - | chr1_1:17474277-17474296 | Msa0011590:CDS | 35.0% | |
| ! | TTGCTAGCTAATTTTTGCAC+GGG | + | chr1_1:17474396-17474415 | None:intergenic | 35.0% |
| TTATAATCACCATCACCATC+TGG | + | chr1_1:17474782-17474801 | None:intergenic | 35.0% | |
| ! | TTTGAAGCATAGTCACAATC+AGG | + | chr1_1:17474809-17474828 | None:intergenic | 35.0% |
| !! | CTTTTAATTACAGGACCAGT+TGG | - | chr1_1:17474863-17474882 | Msa0011590:intron | 35.0% |
| TTTAATTACAGGACCAGTTG+GGG | - | chr1_1:17474865-17474884 | Msa0011590:intron | 35.0% | |
| ATAATTCTACATACCCCAAC+TGG | + | chr1_1:17474881-17474900 | None:intergenic | 35.0% | |
| ! | AAAAGCACAACAGAAGACAT+GGG | + | chr1_1:17475073-17475092 | None:intergenic | 35.0% |
| !! | TCTGTTGTGCTTTTGAGTAT+TGG | - | chr1_1:17475079-17475098 | Msa0011590:intron | 35.0% |
| !! | CTGTTGTGCTTTTGAGTATT+GGG | - | chr1_1:17475080-17475099 | Msa0011590:intron | 35.0% |
| CATACATAGTTAAATGGAGG+AGG | + | chr1_1:17475109-17475128 | None:intergenic | 35.0% | |
| !! | GGTTTCTAGTGATAATACAC+TGG | - | chr1_1:17475166-17475185 | Msa0011590:CDS | 35.0% |
| ! | AAAGCACAAGCGGAAAATTT+TGG | + | chr1_1:17475247-17475266 | None:intergenic | 35.0% |
| CTTGAATCTTGGTATTCTGA+AGG | - | chr1_1:17475352-17475371 | Msa0011590:CDS | 35.0% | |
| CCATGGCAAGAAACTTTAAA+AGG | + | chr1_1:17475417-17475436 | None:intergenic | 35.0% | |
| !!! | CCTTTTAAAGTTTCTTGCCA+TGG | - | chr1_1:17475414-17475433 | Msa0011590:CDS | 35.0% |
| AAATACGTTCTACATAGCCA+TGG | + | chr1_1:17475434-17475453 | None:intergenic | 35.0% | |
| AATCTCAAACCCTTGTTCTT+GGG | + | chr1_1:17475601-17475620 | None:intergenic | 35.0% | |
| AAATCTCAAACCCTTGTTCT+TGG | + | chr1_1:17475602-17475621 | None:intergenic | 35.0% | |
| !! | ACAAGGGTTTGAGATTTTAG+AGG | - | chr1_1:17475605-17475624 | Msa0011590:intron | 35.0% |
| ATATATGGTCAAGCATGCAT+AGG | - | chr1_1:17475748-17475767 | Msa0011590:intron | 35.0% | |
| TGTCAAAATGTGTCCCAATT+TGG | + | chr1_1:17475784-17475803 | None:intergenic | 35.0% | |
| AGTATACATAGACGTGCAAA+AGG | - | chr1_1:17475863-17475882 | Msa0011590:CDS | 35.0% | |
| ! | GCATATCAGCAGTAATTTGT+GGG | + | chr1_1:17475920-17475939 | None:intergenic | 35.0% |
| AGCATATCAGCAGTAATTTG+TGG | + | chr1_1:17475921-17475940 | None:intergenic | 35.0% | |
| TGAGGGTAGAAAAGATAACT+TGG | + | chr1_1:17475949-17475968 | None:intergenic | 35.0% | |
| ! | TCTTTTCTACCCTCATACTT+AGG | - | chr1_1:17475954-17475973 | Msa0011590:intron | 35.0% |
| !! | GTGTCACTTCTTGATTCAAT+TGG | + | chr1_1:17476035-17476054 | None:intergenic | 35.0% |
| !!! | TTTTGACGCTGTTTCTGAAA+AGG | + | chr1_1:17476168-17476187 | None:intergenic | 35.0% |
| !! | AGTTGATGAAGGTCTACTTA+AGG | + | chr1_1:17476368-17476387 | None:intergenic | 35.0% |
| ! | ACCTTGTCCTTTCTGAAAAT+TGG | - | chr1_1:17476397-17476416 | Msa0011590:intron | 35.0% |
| ! | TCCAATTTTCAGAAAGGACA+AGG | + | chr1_1:17476401-17476420 | None:intergenic | 35.0% |
| GCCTTAATTCATTAAGAAGC+AGG | - | chr1_1:17476544-17476563 | Msa0011590:intron | 35.0% | |
| GCCTGCTTCTTAATGAATTA+AGG | + | chr1_1:17476548-17476567 | None:intergenic | 35.0% | |
| AGATGGTGAAAACTAGGATT+AGG | - | chr1_1:17476607-17476626 | Msa0011590:intron | 35.0% | |
| AAAACTAGGATTAGGTGGTT+TGG | - | chr1_1:17476615-17476634 | Msa0011590:intron | 35.0% | |
| AAACTAGGATTAGGTGGTTT+GGG | - | chr1_1:17476616-17476635 | Msa0011590:intron | 35.0% | |
| !!! | GACCTGTAGATTTTGAAGTA+AGG | - | chr1_1:17476652-17476671 | Msa0011590:intron | 35.0% |
| CTCCTTACTTCAAAATCTAC+AGG | + | chr1_1:17476657-17476676 | None:intergenic | 35.0% | |
| !!! | CTGTAGATTTTGAAGTAAGG+AGG | - | chr1_1:17476655-17476674 | Msa0011590:intron | 35.0% |
| AGATCTAGAGATTAATGAGC+TGG | - | chr1_1:17476755-17476774 | Msa0011590:intron | 35.0% | |
| ! | AGAATCAGTTTTTGTCTGCA+TGG | + | chr1_1:17476891-17476910 | None:intergenic | 35.0% |
| !! | AAGTAAGTGATGGATCCTTA+GGG | + | chr1_1:17477014-17477033 | None:intergenic | 35.0% |
| !! | AAAGTAAGTGATGGATCCTT+AGG | + | chr1_1:17477015-17477034 | None:intergenic | 35.0% |
| TTATAGGAAAGGAGACAACA+GGG | + | chr1_1:17477046-17477065 | None:intergenic | 35.0% | |
| TTTATAGGAAAGGAGACAAC+AGG | + | chr1_1:17477047-17477066 | None:intergenic | 35.0% | |
| AAACATCAGTATAGCAGTGT+TGG | - | chr1_1:17477064-17477083 | Msa0011590:intron | 35.0% | |
| TATACTTCCTATTGAGGATC+AGG | + | chr1_1:17477118-17477137 | None:intergenic | 35.0% | |
| TTGTCAACAGCTCAATACAT+CGG | - | chr1_1:17477289-17477308 | Msa0011590:intron | 35.0% | |
| TTGGATCACAATGTGTCAAA+AGG | - | chr1_1:17477357-17477376 | Msa0011590:intron | 35.0% | |
| TGCTCTATATCTCAGTTTAG+TGG | - | chr1_1:17477593-17477612 | Msa0011590:CDS | 35.0% | |
| !!! | AATTGGTCCTTTTGCTGTTT+CGG | + | chr1_1:17477892-17477911 | None:intergenic | 35.0% |
| CTGTTGCTGGTCAATATAAT+TGG | + | chr1_1:17477909-17477928 | None:intergenic | 35.0% | |
| ! | GTTGCTTCATCACTTGTTAA+CGG | - | chr1_1:17478082-17478101 | Msa0011590:intron | 35.0% |
| TTGTTAACGGTATGTGCTTT+AGG | - | chr1_1:17478095-17478114 | Msa0011590:intron | 35.0% | |
| ATCTCTAACCCCTTAAAAGA+AGG | - | chr1_1:17478118-17478137 | Msa0011590:intron | 35.0% | |
| TCTCTAACCCCTTAAAAGAA+GGG | - | chr1_1:17478119-17478138 | Msa0011590:intron | 35.0% | |
| ! | CCATTTTCCCTTCTTTTAAG+GGG | + | chr1_1:17478129-17478148 | None:intergenic | 35.0% |
| CCATTGGGGAAAAGATAAAT+GGG | + | chr1_1:17478607-17478626 | None:intergenic | 35.0% | |
| TCCATTGGGGAAAAGATAAA+TGG | + | chr1_1:17478608-17478627 | None:intergenic | 35.0% | |
| ! | TTATCTTTTCCCCAATGGAA+TGG | - | chr1_1:17478609-17478628 | Msa0011590:intron | 35.0% |
| TACTACAAAAGATGATACCC+TGG | - | chr1_1:17478729-17478748 | Msa0011590:CDS | 35.0% | |
| ! | TTAGTTTGGATAACTCTGAG+GGG | + | chr1_1:17478760-17478779 | None:intergenic | 35.0% |
| GACTTCGTTCTCAATTAGTT+TGG | + | chr1_1:17478774-17478793 | None:intergenic | 35.0% | |
| ! | TTCCATTGTAGCTATTGACT+TGG | + | chr1_1:17478798-17478817 | None:intergenic | 35.0% |
| ACTTAGATGTTCAGTGTATG+GGG | - | chr1_1:17478879-17478898 | Msa0011590:intron | 35.0% | |
| ! | ATTGACTTTCAAACTCACCA+CGG | + | chr1_1:17478949-17478968 | None:intergenic | 35.0% |
| ! | AAATCTTGATTCTGGAAACC+AGG | + | chr1_1:17479311-17479330 | None:intergenic | 35.0% |
| TCGGAAACAAATCTTGATTC+TGG | + | chr1_1:17479319-17479338 | None:intergenic | 35.0% | |
| TTACTCAGAGAAACATCTAC+CGG | + | chr1_1:17479409-17479428 | None:intergenic | 35.0% | |
| !! | AAATCTGGTGCTATTTCTCT+TGG | + | chr1_1:17479529-17479548 | None:intergenic | 35.0% |
| ATGCTGTCATCACAAAAATC+TGG | + | chr1_1:17479544-17479563 | None:intergenic | 35.0% | |
| ! | AGATTTTTGTGATGACAGCA+TGG | - | chr1_1:17479543-17479562 | Msa0011590:intron | 35.0% |
| !! | TGTTGATTCTAGTCCATCTA+TGG | - | chr1_1:17479633-17479652 | Msa0011590:intron | 35.0% |
| !! | AAGTTGTTAAGCTTGCTAGT+GGG | - | chr1_1:17479740-17479759 | Msa0011590:intron | 35.0% |
| TGATAATATGCTGAACATGC+AGG | - | chr1_1:17479878-17479897 | Msa0011590:intron | 35.0% | |
| GATAATATGCTGAACATGCA+GGG | - | chr1_1:17479879-17479898 | Msa0011590:intron | 35.0% | |
| AGACATAACTTCAGAGATGT+TGG | - | chr1_1:17480055-17480074 | Msa0011590:CDS | 35.0% | |
| !! | TTTTGGGAAGTTATCTAGAC+AGG | - | chr1_1:17480100-17480119 | Msa0011590:CDS | 35.0% |
| ! | ACTATAGCTACTCATGGTTT+TGG | + | chr1_1:17480132-17480151 | None:intergenic | 35.0% |
| CTCTTTACTATAGCTACTCA+TGG | + | chr1_1:17480138-17480157 | None:intergenic | 35.0% | |
| TATTGCATGCTGCTAAATTG+AGG | + | chr1_1:17480272-17480291 | None:intergenic | 35.0% | |
| ! | CACAAGGTGTTAAAAAGATG+AGG | - | chr1_1:17480435-17480454 | Msa0011590:CDS | 35.0% |
| GGTGTTAAAAAGATGAGGAA+AGG | - | chr1_1:17480440-17480459 | Msa0011590:CDS | 35.0% | |
| TCTTAATGTTTCAATGCAGG+CGG | - | chr1_1:17480549-17480568 | Msa0011590:intron | 35.0% | |
| CACAACAATGATATATCGTC+AGG | + | chr1_1:17480617-17480636 | None:intergenic | 35.0% | |
| !! | GCTTTGACTTTGTTGATGAT+TGG | - | chr1_1:17480789-17480808 | Msa0011590:CDS | 35.0% |
| !! | ACTTTGTTGATGATTGGCAT+AGG | - | chr1_1:17480795-17480814 | Msa0011590:CDS | 35.0% |
| TATTATGATCATCATGGCTC+GGG | - | chr1_1:17480850-17480869 | Msa0011590:exon | 35.0% | |
| TGGGGTGGAATTGAGAAATT+GGG | + | chr1_1:17472313-17472332 | None:intergenic | 40.0% | |
| TTGGGGTGGAATTGAGAAAT+TGG | + | chr1_1:17472314-17472333 | None:intergenic | 40.0% | |
| AATTAGGGTTCAATTTGGGG+TGG | + | chr1_1:17472328-17472347 | None:intergenic | 40.0% | |
| GTTCATGGTGTGAGGAATTA+GGG | + | chr1_1:17472343-17472362 | None:intergenic | 40.0% | |
| TGTTCATGGTGTGAGGAATT+AGG | + | chr1_1:17472344-17472363 | None:intergenic | 40.0% | |
| TCGGTGAATTGAGATCAGTT+GGG | + | chr1_1:17472368-17472387 | None:intergenic | 40.0% | |
| TTCGGTGAATTGAGATCAGT+TGG | + | chr1_1:17472369-17472388 | None:intergenic | 40.0% | |
| !! | TCAGCTACTGGTTTCTGATT+CGG | + | chr1_1:17472387-17472406 | None:intergenic | 40.0% |
| ! | TGTTGTTGTTGTTCAGCTAC+TGG | + | chr1_1:17472399-17472418 | None:intergenic | 40.0% |
| GTAGCTGAACAACAACAACA+AGG | - | chr1_1:17472399-17472418 | Msa0011590:three_prime_UTR | 40.0% | |
| !!! | CTCTTCTTGAAGGTGTTTTC+CGG | + | chr1_1:17472435-17472454 | None:intergenic | 40.0% |
| ! | AGGGGATTTTCTCTTCTTGA+AGG | + | chr1_1:17472445-17472464 | None:intergenic | 40.0% |
| !! | TTAACCGACCCGTTTTTCTT+CGG | + | chr1_1:17472704-17472723 | None:intergenic | 40.0% |
| AAGAAAAACGGGTCGGTTAA+TGG | - | chr1_1:17472704-17472723 | Msa0011590:intron | 40.0% | |
| GTTAATGGAGTTAAGGGAAC+TGG | - | chr1_1:17472719-17472738 | Msa0011590:intron | 40.0% | |
| !! | TGGCTCGGAAAATTGATTTG+CGG | - | chr1_1:17472753-17472772 | Msa0011590:CDS | 40.0% |
| !! | TCGGAAAATTGATTTGCGGT+TGG | - | chr1_1:17472757-17472776 | Msa0011590:CDS | 40.0% |
| !! | GAAAATTGATTTGCGGTTGG+AGG | - | chr1_1:17472760-17472779 | Msa0011590:CDS | 40.0% |
| GAGGTTAGTGTTCGATTCAT+CGG | - | chr1_1:17472797-17472816 | Msa0011590:CDS | 40.0% | |
| ! | TGTTCGATTCATCGGAGTTT+TGG | - | chr1_1:17472805-17472824 | Msa0011590:CDS | 40.0% |
| GACTGTGAGTTTGTGTAAGT+TGG | - | chr1_1:17472920-17472939 | Msa0011590:intron | 40.0% | |
| GAAAATTCGAGGATGTTTGC+AGG | - | chr1_1:17473013-17473032 | Msa0011590:intron | 40.0% | |
| ! | TCCGTTCTTTTCGTTGTGTA+AGG | - | chr1_1:17473048-17473067 | Msa0011590:CDS | 40.0% |
| ! | GTTCTTTTCGTTGTGTAAGG+TGG | - | chr1_1:17473051-17473070 | Msa0011590:CDS | 40.0% |
| CAGTTTGTCTGCTGCTAATA+GGG | - | chr1_1:17473108-17473127 | Msa0011590:CDS | 40.0% | |
| TGATGTATGAAGCACGGATA+CGG | - | chr1_1:17473373-17473392 | Msa0011590:intron | 40.0% | |
| TCTCAAATTACTAGCGGTGT+TGG | + | chr1_1:17473428-17473447 | None:intergenic | 40.0% | |
| ! | CTGGAGTGATTGGACATTTT+TGG | - | chr1_1:17473729-17473748 | Msa0011590:CDS | 40.0% |
| TGGACTACAATCTACAATGG+TGG | + | chr1_1:17473761-17473780 | None:intergenic | 40.0% | |
| ! | AGACAAGGCATTCTGAGAAA+TGG | + | chr1_1:17473872-17473891 | None:intergenic | 40.0% |
| ATCATGTGTTCTGACTGTGT+AGG | + | chr1_1:17473913-17473932 | None:intergenic | 40.0% | |
| AGGGCATGTTTCTTTCTCAT+TGG | + | chr1_1:17473965-17473984 | None:intergenic | 40.0% | |
| !! | AGAAACATGCCCTTTAAAGC+CGG | - | chr1_1:17473972-17473991 | Msa0011590:CDS | 40.0% |
| !! | TAGCATCTTCCGGCTTTAAA+GGG | + | chr1_1:17473984-17474003 | None:intergenic | 40.0% |
| ! | TTAGCATCTTCCGGCTTTAA+AGG | + | chr1_1:17473985-17474004 | None:intergenic | 40.0% |
| CATACCACTTTAGCATCTTC+CGG | + | chr1_1:17473994-17474013 | None:intergenic | 40.0% | |
| TTACCAACAGTTGTGCAAAG+GGG | + | chr1_1:17474062-17474081 | None:intergenic | 40.0% | |
| GATTACCAACAGTTGTGCAA+AGG | + | chr1_1:17474064-17474083 | None:intergenic | 40.0% | |
| !! | TGCACAACTGTTGGTAATCA+TGG | - | chr1_1:17474065-17474084 | Msa0011590:CDS | 40.0% |
| ! | CATGGAAACTAGTTTAGAGG+GGG | - | chr1_1:17474083-17474102 | Msa0011590:CDS | 40.0% |
| ATGAAGGCAGTACTGTATCA+GGG | - | chr1_1:17474179-17474198 | Msa0011590:CDS | 40.0% | |
| CTGAGTGAAATTAGTCAGGT+CGG | + | chr1_1:17474270-17474289 | None:intergenic | 40.0% | |
| CTGCCAAAGTTGTGAAGATA+AGG | - | chr1_1:17474472-17474491 | Msa0011590:CDS | 40.0% | |
| ! | CAGCCTTATCTTCACAACTT+TGG | + | chr1_1:17474478-17474497 | None:intergenic | 40.0% |
| CAGAAAGGATTCCTCTAACA+AGG | - | chr1_1:17474742-17474761 | Msa0011590:intron | 40.0% | |
| GTCAGTTTGATCCTTGTTAG+AGG | + | chr1_1:17474756-17474775 | None:intergenic | 40.0% | |
| GATCAAACTGACATACCAGA+TGG | - | chr1_1:17474764-17474783 | Msa0011590:intron | 40.0% | |
| TGCTTCAAAAGATGTTAGCG+AGG | - | chr1_1:17474820-17474839 | Msa0011590:intron | 40.0% | |
| TTCAAAAGATGTTAGCGAGG+AGG | - | chr1_1:17474823-17474842 | Msa0011590:intron | 40.0% | |
| TCAAAAGATGTTAGCGAGGA+GGG | - | chr1_1:17474824-17474843 | Msa0011590:intron | 40.0% | |
| CAGAAGGTTCAAACGTGAAA+TGG | + | chr1_1:17474979-17474998 | None:intergenic | 40.0% | |
| ! | CAAAAGCACAACAGAAGACA+TGG | + | chr1_1:17475074-17475093 | None:intergenic | 40.0% |
| ! | GTAATTTGTGGGCGAGTAAA+CGG | + | chr1_1:17475909-17475928 | None:intergenic | 40.0% |
| ACCTTTACCACCTTGCATAA+GGG | - | chr1_1:17475994-17476013 | Msa0011590:intron | 40.0% | |
| ! | GTTGATTAGTCCCTTATGCA+AGG | + | chr1_1:17476007-17476026 | None:intergenic | 40.0% |
| ! | ATCTTTTGGTCAGAGTGAGA+AGG | + | chr1_1:17476111-17476130 | None:intergenic | 40.0% |
| TGCAAGCTACAATCAGAGTT+AGG | - | chr1_1:17476294-17476313 | Msa0011590:intron | 40.0% | |
| ! | CTGAGCTTGGTGAAACTTAT+AGG | + | chr1_1:17476431-17476450 | None:intergenic | 40.0% |
| !! | TTCTCAATAAGTGCTGAGCT+TGG | + | chr1_1:17476444-17476463 | None:intergenic | 40.0% |
| AGGCAGAATATAAGCAACAC+AGG | + | chr1_1:17476528-17476547 | None:intergenic | 40.0% | |
| TGGTGAAAACTAGGATTAGG+TGG | - | chr1_1:17476610-17476629 | Msa0011590:intron | 40.0% | |
| AGTAAGGAGGGTAGATAAGA+TGG | - | chr1_1:17476668-17476687 | Msa0011590:intron | 40.0% | |
| ! | AAGCCTTATCCCTTTAAGTG+GGG | + | chr1_1:17476836-17476855 | None:intergenic | 40.0% |
| ! | CAAGCCTTATCCCTTTAAGT+GGG | + | chr1_1:17476837-17476856 | None:intergenic | 40.0% |
| ! | ATCAGTTTTTGTCTGCATGG+AGG | + | chr1_1:17476888-17476907 | None:intergenic | 40.0% |
| ! | GCACTTTCTGCACTTTTAGA+GGG | + | chr1_1:17476960-17476979 | None:intergenic | 40.0% |
| ! | AGCACTTTCTGCACTTTTAG+AGG | + | chr1_1:17476961-17476980 | None:intergenic | 40.0% |
| !!! | AAGTGCAGAAAGTGCTTTTG+TGG | - | chr1_1:17476965-17476984 | Msa0011590:intron | 40.0% |
| !!! | GAAAGTGCTTTTGTGGAGTT+AGG | - | chr1_1:17476972-17476991 | Msa0011590:intron | 40.0% |
| GTATCAAGAGTCATACCCTA+AGG | - | chr1_1:17476996-17477015 | Msa0011590:intron | 40.0% | |
| TTTACTGCCTGATCCTCAAT+AGG | - | chr1_1:17477108-17477127 | Msa0011590:intron | 40.0% | |
| ! | ACTGCTGTCAAGCAGTATTT+TGG | - | chr1_1:17477326-17477345 | Msa0011590:intron | 40.0% |
| !! | CAGTATTTTGGAGATGCTCT+TGG | - | chr1_1:17477338-17477357 | Msa0011590:intron | 40.0% |
| TCTTTAACATTAGGCGAAGC+TGG | + | chr1_1:17477666-17477685 | None:intergenic | 40.0% | |
| ATGATAACCCTATCCGATGA+TGG | - | chr1_1:17477717-17477736 | Msa0011590:intron | 40.0% | |
| ! | ATCCTTTTTCCTGAAGATCG+TGG | - | chr1_1:17477840-17477859 | Msa0011590:intron | 40.0% |
| ATCCACGATCTTCAGGAAAA+AGG | + | chr1_1:17477845-17477864 | None:intergenic | 40.0% | |
| TGTTTCGGCAATGTGTTGTA+TGG | + | chr1_1:17477877-17477896 | None:intergenic | 40.0% | |
| ATATGCAAACTCACTGTTGC+TGG | + | chr1_1:17477922-17477941 | None:intergenic | 40.0% | |
| AAGTGATGAAGCAACTCATC+TGG | + | chr1_1:17478077-17478096 | None:intergenic | 40.0% | |
| CCCCTTAAAAGAAGGGAAAA+TGG | - | chr1_1:17478126-17478145 | Msa0011590:intron | 40.0% | |
| GAATATCTCTGTCACAAGAC+TGG | + | chr1_1:17478249-17478268 | None:intergenic | 40.0% | |
| ! | CCCATTTATCTTTTCCCCAA+TGG | - | chr1_1:17478604-17478623 | Msa0011590:intron | 40.0% |
| TTTCACCAAGCCATTCCATT+GGG | + | chr1_1:17478622-17478641 | None:intergenic | 40.0% | |
| AATGTCTGCACTTTCTTGTC+TGG | + | chr1_1:17478668-17478687 | None:intergenic | 40.0% | |
| ! | CTCACTTCCTTTTGATCTTG+AGG | - | chr1_1:17478694-17478713 | Msa0011590:CDS | 40.0% |
| AATGGAAAACCACTCAAGCT+GGG | - | chr1_1:17478811-17478830 | Msa0011590:intron | 40.0% | |
| AGAGCTTTGCATCAATGAGA+AGG | - | chr1_1:17478850-17478869 | Msa0011590:intron | 40.0% | |
| ATTAGATCTATTCCAGACCG+TGG | - | chr1_1:17478929-17478948 | Msa0011590:intron | 40.0% | |
| ! | ATATAGTTGTTCTGGACCCT+CGG | - | chr1_1:17478988-17479007 | Msa0011590:CDS | 40.0% |
| ATCCTTATCCATAGCATCAG+TGG | + | chr1_1:17479059-17479078 | None:intergenic | 40.0% | |
| AGAATCAGTGTTGCCTTCAA+GGG | + | chr1_1:17479134-17479153 | None:intergenic | 40.0% | |
| AAGAATCAGTGTTGCCTTCA+AGG | + | chr1_1:17479135-17479154 | None:intergenic | 40.0% | |
| !! | TTCTGGTTTGGAAGATTCAG+AGG | - | chr1_1:17479213-17479232 | Msa0011590:CDS | 40.0% |
| TGACAAACGCTGAAAGAGAA+TGG | + | chr1_1:17479442-17479461 | None:intergenic | 40.0% | |
| ! | ACTGTATCGATCTCCATAGA+TGG | + | chr1_1:17479649-17479668 | None:intergenic | 40.0% |
| TCGATACAGTGCAAAATGTG+TGG | - | chr1_1:17479659-17479678 | Msa0011590:intron | 40.0% | |
| ATACAGTGCAAAATGTGTGG+AGG | - | chr1_1:17479662-17479681 | Msa0011590:intron | 40.0% | |
| !! | GAAGTTGTTAAGCTTGCTAG+TGG | - | chr1_1:17479739-17479758 | Msa0011590:intron | 40.0% |
| AAACGTCTCTTCATCAGACA+GGG | + | chr1_1:17479925-17479944 | None:intergenic | 40.0% | |
| TAAACGTCTCTTCATCAGAC+AGG | + | chr1_1:17479926-17479945 | None:intergenic | 40.0% | |
| CTGATGAAGAGACGTTTAGT+TGG | - | chr1_1:17479928-17479947 | Msa0011590:intron | 40.0% | |
| ATGTCAACTGTTGCTGTACA+TGG | - | chr1_1:17479969-17479988 | Msa0011590:intron | 40.0% | |
| TGCCAAGCATATAGAAGAAG+TGG | - | chr1_1:17480004-17480023 | Msa0011590:intron | 40.0% | |
| GCCAAGCATATAGAAGAAGT+GGG | - | chr1_1:17480005-17480024 | Msa0011590:intron | 40.0% | |
| TCCCACTTCTTCTATATGCT+TGG | + | chr1_1:17480009-17480028 | None:intergenic | 40.0% | |
| AGAAGAAGTGGGATCGAAAT+TGG | - | chr1_1:17480016-17480035 | Msa0011590:intron | 40.0% | |
| GAAGAAGTGGGATCGAAATT+GGG | - | chr1_1:17480017-17480036 | Msa0011590:intron | 40.0% | |
| !!! | GAAATTGGGTTTTGAGGACA+GGG | - | chr1_1:17480031-17480050 | Msa0011590:intron | 40.0% |
| ATCTTGCAGGAACAATGGAT+CGG | + | chr1_1:17480328-17480347 | None:intergenic | 40.0% | |
| TGATGATCTTGCAGGAACAA+TGG | + | chr1_1:17480333-17480352 | None:intergenic | 40.0% | |
| TCCTGCAAGATCATCAACAA+CGG | - | chr1_1:17480337-17480356 | Msa0011590:intron | 40.0% | |
| GCGCCAAATTTCAATTTCAG+AGG | - | chr1_1:17480400-17480419 | Msa0011590:intron | 40.0% | |
| GCTGAACATTATTTGAGCAG+AGG | - | chr1_1:17480575-17480594 | Msa0011590:intron | 40.0% | |
| ! | TTGATGATTGGCATAGGAGT+AGG | - | chr1_1:17480801-17480820 | Msa0011590:CDS | 40.0% |
| GGGGTGGAATTGAGAAATTG+GGG | + | chr1_1:17472312-17472331 | None:intergenic | 45.0% | |
| ! | GAGATCAGTTGGGTTGTTCA+TGG | + | chr1_1:17472358-17472377 | None:intergenic | 45.0% |
| ACAACAAGGATCATGCACTC+CGG | - | chr1_1:17472413-17472432 | Msa0011590:three_prime_UTR | 45.0% | |
| !! | TCCGAGGAGTGGATTTTGAA+GGG | + | chr1_1:17472464-17472483 | None:intergenic | 45.0% |
| !! | TTCCGAGGAGTGGATTTTGA+AGG | + | chr1_1:17472465-17472484 | None:intergenic | 45.0% |
| TCCTCGGAAAAAAACCTCCA+GGG | - | chr1_1:17472476-17472495 | Msa0011590:three_prime_UTR | 45.0% | |
| GGGTCGGTTAATGGAGTTAA+GGG | - | chr1_1:17472713-17472732 | Msa0011590:intron | 45.0% | |
| GCAGTTTGTCTGCTGCTAAT+AGG | - | chr1_1:17473107-17473126 | Msa0011590:CDS | 45.0% | |
| GAGAGTGGAAGAACTAACTG+TGG | - | chr1_1:17473130-17473149 | Msa0011590:CDS | 45.0% | |
| ! | TGTCAGTGTTGTGTTGGTGT+CGG | - | chr1_1:17473476-17473495 | Msa0011590:CDS | 45.0% |
| TGAGAGCTCACCCACTTTAT+TGG | - | chr1_1:17473629-17473648 | Msa0011590:CDS | 45.0% | |
| CATCTCTTGACTGGAGTGAT+TGG | - | chr1_1:17473719-17473738 | Msa0011590:CDS | 45.0% | |
| CTGAGAAATGGATGTGCTTG+AGG | + | chr1_1:17473860-17473879 | None:intergenic | 45.0% | |
| ! | TTGGCTAGAGCTGAGTTTTC+TGG | + | chr1_1:17473946-17473965 | None:intergenic | 45.0% |
| AAAGCCGGAAGATGCTAAAG+TGG | - | chr1_1:17473987-17474006 | Msa0011590:CDS | 45.0% | |
| TACCAACAGTTGTGCAAAGG+GGG | + | chr1_1:17474061-17474080 | None:intergenic | 45.0% | |
| TTATTACCAGGACTTGGAGG+TGG | - | chr1_1:17474156-17474175 | Msa0011590:CDS | 45.0% | |
| GATGAAGGCAGTACTGTATC+AGG | - | chr1_1:17474178-17474197 | Msa0011590:CDS | 45.0% | |
| ! | TGGCTCAGCATCTGATTTTC+TGG | + | chr1_1:17474218-17474237 | None:intergenic | 45.0% |
| TGAATGTTGTACCTACTCGG+TGG | + | chr1_1:17474238-17474257 | None:intergenic | 45.0% | |
| TTCCCTCGGTAGTTTAGCAA+TGG | - | chr1_1:17474291-17474310 | Msa0011590:CDS | 45.0% | |
| TCCCTCGGTAGTTTAGCAAT+GGG | - | chr1_1:17474292-17474311 | Msa0011590:CDS | 45.0% | |
| TCCCATTGCTAAACTACCGA+GGG | + | chr1_1:17474296-17474315 | None:intergenic | 45.0% | |
| ATCCCATTGCTAAACTACCG+AGG | + | chr1_1:17474297-17474316 | None:intergenic | 45.0% | |
| CAAGGGAAAACCTCACTATC+AGG | + | chr1_1:17474427-17474446 | None:intergenic | 45.0% | |
| ATAAGGCTGAGAGCAGCTTA+TGG | - | chr1_1:17474489-17474508 | Msa0011590:CDS | 45.0% | |
| CAAACCAACAAAAGCCTCAG+AGG | - | chr1_1:17474523-17474542 | Msa0011590:CDS | 45.0% | |
| CTAGAAATGTCAGACCTCTG+AGG | + | chr1_1:17474540-17474559 | None:intergenic | 45.0% | |
| CCAGTCACGCAAGAAATTCA+GGG | + | chr1_1:17474690-17474709 | None:intergenic | 45.0% | |
| ACCAGTCACGCAAGAAATTC+AGG | + | chr1_1:17474691-17474710 | None:intergenic | 45.0% | |
| ! | TGCGTGACTGGTTACATCAT+TGG | - | chr1_1:17474699-17474718 | Msa0011590:intron | 45.0% |
| ACTGACATACCAGATGGTGA+TGG | - | chr1_1:17474770-17474789 | Msa0011590:intron | 45.0% | |
| CAACTGTGACATACACTCGA+TGG | - | chr1_1:17474909-17474928 | Msa0011590:CDS | 45.0% | |
| GAGTCTGTCATATTGCAGAG+TGG | - | chr1_1:17475549-17475568 | Msa0011590:CDS | 45.0% | |
| TATGCTTGTGCCCAAGAACA+AGG | - | chr1_1:17475588-17475607 | Msa0011590:intron | 45.0% | |
| ATGCTTGTGCCCAAGAACAA+GGG | - | chr1_1:17475589-17475608 | Msa0011590:intron | 45.0% | |
| CACCTTTACCACCTTGCATA+AGG | - | chr1_1:17475993-17476012 | Msa0011590:intron | 45.0% | |
| TCCCTTATGCAAGGTGGTAA+AGG | + | chr1_1:17475998-17476017 | None:intergenic | 45.0% | |
| ! | GATTAGTCCCTTATGCAAGG+TGG | + | chr1_1:17476004-17476023 | None:intergenic | 45.0% |
| ! | TGGTCAGAGTGAGAAGGTTT+TGG | + | chr1_1:17476105-17476124 | None:intergenic | 45.0% |
| AGTCACAAAATGGTCAGTGC+AGG | + | chr1_1:17476328-17476347 | None:intergenic | 45.0% | |
| ! | AGCAGGCTTTCACTGTTTTC+AGG | - | chr1_1:17476561-17476580 | Msa0011590:intron | 45.0% |
| ! | GCAGGCTTTCACTGTTTTCA+GGG | - | chr1_1:17476562-17476581 | Msa0011590:intron | 45.0% |
| AAGGAGGGTAGATAAGATGG+AGG | - | chr1_1:17476671-17476690 | Msa0011590:intron | 45.0% | |
| AGGAGGGTAGATAAGATGGA+GGG | - | chr1_1:17476672-17476691 | Msa0011590:intron | 45.0% | |
| GAGGGTAGTCAAATCACTAG+AGG | - | chr1_1:17476690-17476709 | Msa0011590:intron | 45.0% | |
| AGTCAAATCACTAGAGGCAG+AGG | - | chr1_1:17476696-17476715 | Msa0011590:intron | 45.0% | |
| !! | TTTAAGTGGGGTGGGCTATA+TGG | + | chr1_1:17476824-17476843 | None:intergenic | 45.0% |
| ATATAGCCCACCCCACTTAA+AGG | - | chr1_1:17476823-17476842 | Msa0011590:intron | 45.0% | |
| TATAGCCCACCCCACTTAAA+GGG | - | chr1_1:17476824-17476843 | Msa0011590:intron | 45.0% | |
| CTTATCCCTTTAAGTGGGGT+GGG | + | chr1_1:17476832-17476851 | None:intergenic | 45.0% | |
| ! | CCAAGCCTTATCCCTTTAAG+TGG | + | chr1_1:17476838-17476857 | None:intergenic | 45.0% |
| CCACTTAAAGGGATAAGGCT+TGG | - | chr1_1:17476835-17476854 | Msa0011590:intron | 45.0% | |
| ! | AGTTTTTGTCTGCATGGAGG+AGG | + | chr1_1:17476885-17476904 | None:intergenic | 45.0% |
| !! | GCTTTTAATGTTGGCTGGAC+TGG | - | chr1_1:17477447-17477466 | Msa0011590:intron | 45.0% |
| GAAGAAGGTCTCTTTCTCAG+TGG | + | chr1_1:17477489-17477508 | None:intergenic | 45.0% | |
| ATGAGCTCCATCATCGGATA+GGG | + | chr1_1:17477727-17477746 | None:intergenic | 45.0% | |
| GCAATACATCCACGATCTTC+AGG | + | chr1_1:17477852-17477871 | None:intergenic | 45.0% | |
| CACATTGCCGAAACAGCAAA+AGG | - | chr1_1:17477882-17477901 | Msa0011590:intron | 45.0% | |
| TGAAGCAACTCATCTGGCAA+TGG | + | chr1_1:17478071-17478090 | None:intergenic | 45.0% | |
| CCAGAACTGAAGATGCAGAA+TGG | + | chr1_1:17478278-17478297 | None:intergenic | 45.0% | |
| CCATTCTGCATCTTCAGTTC+TGG | - | chr1_1:17478275-17478294 | Msa0011590:intron | 45.0% | |
| ! | TTTTCCCCAATGGAATGGCT+TGG | - | chr1_1:17478614-17478633 | Msa0011590:intron | 45.0% |
| TTCACCAAGCCATTCCATTG+GGG | + | chr1_1:17478621-17478640 | None:intergenic | 45.0% | |
| GTTTCACCAAGCCATTCCAT+TGG | + | chr1_1:17478623-17478642 | None:intergenic | 45.0% | |
| ! | CTTCCTTTTGATCTTGAGGC+TGG | - | chr1_1:17478698-17478717 | Msa0011590:CDS | 45.0% |
| TGACCAGCCTCAAGATCAAA+AGG | + | chr1_1:17478704-17478723 | None:intergenic | 45.0% | |
| CGCCAAGTCAATAGCTACAA+TGG | - | chr1_1:17478793-17478812 | Msa0011590:intron | 45.0% | |
| CAATGGAAAACCACTCAAGC+TGG | - | chr1_1:17478810-17478829 | Msa0011590:intron | 45.0% | |
| AAAACCACTCAAGCTGGGAA+GGG | - | chr1_1:17478816-17478835 | Msa0011590:intron | 45.0% | |
| !! | AAGCTGGGAAGGGTTAGTTA+AGG | - | chr1_1:17478826-17478845 | Msa0011590:intron | 45.0% |
| GGTAACATCCTCTTGGCAAA+AGG | - | chr1_1:17479009-17479028 | Msa0011590:CDS | 45.0% | |
| ! | ACTTTGGTCCTTTTGCCAAG+AGG | + | chr1_1:17479020-17479039 | None:intergenic | 45.0% |
| AGTGATGTCCACTGATGCTA+TGG | - | chr1_1:17479048-17479067 | Msa0011590:intron | 45.0% | |
| GTCCACTGATGCTATGGATA+AGG | - | chr1_1:17479054-17479073 | Msa0011590:intron | 45.0% | |
| TACAAGAGACAGTCCCTTGA+AGG | - | chr1_1:17479118-17479137 | Msa0011590:intron | 45.0% | |
| ! | AGCTATGCCAGTACGTCTTT+TGG | - | chr1_1:17479178-17479197 | Msa0011590:intron | 45.0% |
| TAGCTCACCAAAAGACGTAC+TGG | + | chr1_1:17479188-17479207 | None:intergenic | 45.0% | |
| TTTGGTGAGCTACTGCATTC+TGG | - | chr1_1:17479196-17479215 | Msa0011590:intron | 45.0% | |
| ! | TGAGCTACTGCATTCTGGTT+TGG | - | chr1_1:17479201-17479220 | Msa0011590:intron | 45.0% |
| ! | TGGTTTGGAAGATTCAGAGG+TGG | - | chr1_1:17479216-17479235 | Msa0011590:CDS | 45.0% |
| GAGTCTACAGTTGTGTCTTC+TGG | - | chr1_1:17479367-17479386 | Msa0011590:CDS | 45.0% | |
| TCTACAGTTGTGTCTTCTGG+TGG | - | chr1_1:17479370-17479389 | Msa0011590:CDS | 45.0% | |
| AAACATCTACCGGACAAGCA+AGG | + | chr1_1:17479399-17479418 | None:intergenic | 45.0% | |
| ! | ATCTGGATCTTGAGGCACTT+TGG | + | chr1_1:17479473-17479492 | None:intergenic | 45.0% |
| AGTGCCTCAAGATCCAGATT+TGG | - | chr1_1:17479474-17479493 | Msa0011590:CDS | 45.0% | |
| ACCACCAAATCTGGATCTTG+AGG | + | chr1_1:17479481-17479500 | None:intergenic | 45.0% | |
| TCAGTAGTCACCACCAAATC+TGG | + | chr1_1:17479490-17479509 | None:intergenic | 45.0% | |
| ! | GCTGAACATGCAGGGTATTA+TGG | - | chr1_1:17479887-17479906 | Msa0011590:intron | 45.0% |
| TCTTCATCAGACAGGGAAGT+TGG | + | chr1_1:17479918-17479937 | None:intergenic | 45.0% | |
| ! | GGGATCGAAATTGGGTTTTG+AGG | - | chr1_1:17480025-17480044 | Msa0011590:intron | 45.0% |
| !!! | CGAAATTGGGTTTTGAGGAC+AGG | - | chr1_1:17480030-17480049 | Msa0011590:intron | 45.0% |
| !!! | AGCTACTCATGGTTTTGGTG+TGG | + | chr1_1:17480127-17480146 | None:intergenic | 45.0% |
| ACGACCGAAGAAACGATAAG+AGG | - | chr1_1:17480171-17480190 | Msa0011590:CDS | 45.0% | |
| GAGGATTTCCGCATTTCACA+AGG | - | chr1_1:17480419-17480438 | Msa0011590:CDS | 45.0% | |
| TTCACAGTATGCTGCTAACG+TGG | - | chr1_1:17480664-17480683 | Msa0011590:intron | 45.0% | |
| !! | ATTAAAATAAAATTGAATTA+AGG | + | chr1_1:17477511-17477530 | None:intergenic | 5.0% |
| ! | GTTGGGTTGTTCATGGTGTG+AGG | + | chr1_1:17472351-17472370 | None:intergenic | 50.0% |
| !! | CCGAGGAGTGGATTTTGAAG+GGG | + | chr1_1:17472463-17472482 | None:intergenic | 50.0% |
| CCCCTTCAAAATCCACTCCT+CGG | - | chr1_1:17472460-17472479 | Msa0011590:three_prime_UTR | 50.0% | |
| !!! | GGAGGTTTTTTTCCGAGGAG+TGG | + | chr1_1:17472475-17472494 | None:intergenic | 50.0% |
| CTCCTCGGAAAAAAACCTCC+AGG | - | chr1_1:17472475-17472494 | Msa0011590:three_prime_UTR | 50.0% | |
| !!! | ACCCTGGAGGTTTTTTTCCG+AGG | + | chr1_1:17472480-17472499 | None:intergenic | 50.0% |
| TACGCCGAAGAAAAACGGGT+CGG | - | chr1_1:17472697-17472716 | Msa0011590:intron | 50.0% | |
| CGGGTCGGTTAATGGAGTTA+AGG | - | chr1_1:17472712-17472731 | Msa0011590:intron | 50.0% | |
| ! | TCAATTTTCCGAGCCACGTC+AGG | + | chr1_1:17472749-17472768 | None:intergenic | 50.0% |
| TCTGCTGCTAATAGGGAGAG+TGG | - | chr1_1:17473115-17473134 | Msa0011590:CDS | 50.0% | |
| AACAGTTGTGCAAAGGGGGA+AGG | + | chr1_1:17474057-17474076 | None:intergenic | 50.0% | |
| TTCCCCCTTTGCACAACTGT+TGG | - | chr1_1:17474056-17474075 | Msa0011590:CDS | 50.0% | |
| !!! | CAGACCTCTGAGGCTTTTGT+TGG | + | chr1_1:17474530-17474549 | None:intergenic | 50.0% |
| CCCTGAATTTCTTGCGTGAC+TGG | - | chr1_1:17474687-17474706 | Msa0011590:intron | 50.0% | |
| CCTTATCCCTTTAAGTGGGG+TGG | + | chr1_1:17476833-17476852 | None:intergenic | 50.0% | |
| CCACCCCACTTAAAGGGATA+AGG | - | chr1_1:17476830-17476849 | Msa0011590:intron | 50.0% | |
| AAATGATGTGGCGTGCGTCT+TGG | - | chr1_1:17477143-17477162 | Msa0011590:intron | 50.0% | |
| !! | AATGTTGGCTGGACTGGTTC+TGG | - | chr1_1:17477453-17477472 | Msa0011590:intron | 50.0% |
| CATGAGCTCCATCATCGGAT+AGG | + | chr1_1:17477728-17477747 | None:intergenic | 50.0% | |
| !! | CTATCCGATGATGGAGCTCA+TGG | - | chr1_1:17477726-17477745 | Msa0011590:intron | 50.0% |
| AGGACCATGAGCTCCATCAT+CGG | + | chr1_1:17477733-17477752 | None:intergenic | 50.0% | |
| !! | AACTTCTGAGACGTTCCACC+AGG | + | chr1_1:17477753-17477772 | None:intergenic | 50.0% |
| !! | TTCGGCGTTGACTTCTTCTG+TGG | + | chr1_1:17478203-17478222 | None:intergenic | 50.0% |
| CGACGGCCTACAAAATGTTG+TGG | - | chr1_1:17478458-17478477 | Msa0011590:CDS | 50.0% | |
| ! | AACTCTGAGGGGAAACTCCA+GGG | + | chr1_1:17478749-17478768 | None:intergenic | 50.0% |
| ! | TAACTCTGAGGGGAAACTCC+AGG | + | chr1_1:17478750-17478769 | None:intergenic | 50.0% |
| GAAAACCACTCAAGCTGGGA+AGG | - | chr1_1:17478815-17478834 | Msa0011590:intron | 50.0% | |
| CTTTCAAACTCACCACGGTC+TGG | + | chr1_1:17478944-17478963 | None:intergenic | 50.0% | |
| TGCCAAGAGGATGTTACCGA+GGG | + | chr1_1:17479007-17479026 | None:intergenic | 50.0% | |
| TTGCCAAGAGGATGTTACCG+AGG | + | chr1_1:17479008-17479027 | None:intergenic | 50.0% | |
| TTTCAGCGTTTGTCAGCGCT+TGG | - | chr1_1:17479447-17479466 | Msa0011590:CDS | 50.0% | |
| GCCTCAAGATCCAGATTTGG+TGG | - | chr1_1:17479477-17479496 | Msa0011590:CDS | 50.0% | |
| CGCAACTGTGTATAACCCGA+TGG | - | chr1_1:17479570-17479589 | Msa0011590:intron | 50.0% | |
| AGTGACTGCACTCATCCATC+GGG | + | chr1_1:17479588-17479607 | None:intergenic | 50.0% | |
| GAGTGACTGCACTCATCCAT+CGG | + | chr1_1:17479589-17479608 | None:intergenic | 50.0% | |
| TCATCAGACAGGGAAGTTGG+AGG | + | chr1_1:17479915-17479934 | None:intergenic | 50.0% | |
| !! | GCCGTTGTTGATGATCTTGC+AGG | + | chr1_1:17480341-17480360 | None:intergenic | 50.0% |
| GGAGGCGAAATTGTCAGCTG+AGG | - | chr1_1:17472778-17472797 | Msa0011590:CDS | 55.0% | |
| TGAAGCACGGATACGGACAC+CGG | - | chr1_1:17473380-17473399 | Msa0011590:intron | 55.0% | |
| GTCAGTGTCCATGTCGTGTC+CGG | + | chr1_1:17473402-17473421 | None:intergenic | 55.0% | |
| CACAACCACGTGTCTGACAC+CGG | - | chr1_1:17473500-17473519 | Msa0011590:CDS | 55.0% | |
| ACAACCACGTGTCTGACACC+GGG | - | chr1_1:17473501-17473520 | Msa0011590:CDS | 55.0% | |
| TCCTCGAATTAGGCGTGTCC+CGG | + | chr1_1:17473522-17473541 | None:intergenic | 55.0% | |
| GCACGGACACTCCTCGAATT+AGG | + | chr1_1:17473532-17473551 | None:intergenic | 55.0% | |
| CTTCATCCACCTCCAAGTCC+TGG | + | chr1_1:17474165-17474184 | None:intergenic | 55.0% | |
| CAGGACTTGGAGGTGGATGA+AGG | - | chr1_1:17474163-17474182 | Msa0011590:CDS | 55.0% | |
| CTAGAGGCAGAGGAAGACGT+AGG | - | chr1_1:17476706-17476725 | Msa0011590:intron | 55.0% | |
| CATTAGGCGAAGCTGGAGCT+TGG | + | chr1_1:17477659-17477678 | None:intergenic | 55.0% | |
| !! | GATGATGGAGCTCATGGTCC+TGG | - | chr1_1:17477732-17477751 | Msa0011590:intron | 55.0% |
| GTCTTCTGTGGACAACCTGC+AGG | - | chr1_1:17478171-17478190 | Msa0011590:intron | 55.0% | |
| CTAACCCTTCCCAGCTTGAG+TGG | + | chr1_1:17478823-17478842 | None:intergenic | 55.0% | |
| GACCCTCGGTAACATCCTCT+TGG | - | chr1_1:17479002-17479021 | Msa0011590:CDS | 55.0% | |
| ! | TGGTGGACACCTTGCTTGTC+CGG | - | chr1_1:17479387-17479406 | Msa0011590:CDS | 55.0% |
| CATGCCAGCTCAGAACAGAC+AGG | - | chr1_1:17479709-17479728 | Msa0011590:intron | 55.0% | |
| ! | AGCACCTGTCTGTTCTGAGC+TGG | + | chr1_1:17479716-17479735 | None:intergenic | 55.0% |
| TACGGACACCGGACACGACA+TGG | - | chr1_1:17473391-17473410 | Msa0011590:CDS | 60.0% | |
| ACCGGGACACGCCTAATTCG+AGG | - | chr1_1:17473518-17473537 | Msa0011590:CDS | 60.0% | |
| CAGATGCTGAGCCACCGAGT+AGG | - | chr1_1:17474224-17474243 | Msa0011590:CDS | 60.0% | |
| GATGGAGCTCATGGTCCTGG+TGG | - | chr1_1:17477735-17477754 | Msa0011590:intron | 60.0% | |
| CTTCTGTGGCGCAAACCTGC+AGG | + | chr1_1:17478189-17478208 | None:intergenic | 60.0% | |
| !! | GGGAACTGGTTCGCCTGACG+TGG | - | chr1_1:17472733-17472752 | Msa0011590:intron | 65.0% |
| ! | CTGGTTCGCCTGACGTGGCT+CGG | - | chr1_1:17472738-17472757 | Msa0011590:intron | 65.0% |
| ! | GTGTCCCGGTGTCAGACACG+TGG | + | chr1_1:17473508-17473527 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17472283 | 17480929 | 17472283 | ID=Msa0011590;Name=Msa0011590 |
| chr1_1 | mRNA | 17472283 | 17480929 | 17472283 | ID=Msa0011590-mRNA-1;Parent=Msa0011590;Name=Msa0011590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=74|1|1|1|1|1|16|226|1182 |
| chr1_1 | exon | 17472283 | 17472644 | 17472283 | ID=Msa0011590-mRNA-1:exon:6372;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17472747 | 17472929 | 17472747 | ID=Msa0011590-mRNA-1:exon:6371;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17473020 | 17473312 | 17473020 | ID=Msa0011590-mRNA-1:exon:6370;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17473390 | 17474543 | 17473390 | ID=Msa0011590-mRNA-1:exon:6369;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17474890 | 17475019 | 17474890 | ID=Msa0011590-mRNA-1:exon:6368;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17475109 | 17475200 | 17475109 | ID=Msa0011590-mRNA-1:exon:6367;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17475285 | 17475604 | 17475285 | ID=Msa0011590-mRNA-1:exon:6366;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17475834 | 17475913 | 17475834 | ID=Msa0011590-mRNA-1:exon:6365;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17477586 | 17477645 | 17477586 | ID=Msa0011590-mRNA-1:exon:6364;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17478326 | 17478544 | 17478326 | ID=Msa0011590-mRNA-1:exon:6363;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17478668 | 17478752 | 17478668 | ID=Msa0011590-mRNA-1:exon:6362;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17478967 | 17479046 | 17478967 | ID=Msa0011590-mRNA-1:exon:6361;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17479204 | 17479503 | 17479204 | ID=Msa0011590-mRNA-1:exon:6360;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17480032 | 17480199 | 17480032 | ID=Msa0011590-mRNA-1:exon:6359;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17480413 | 17480520 | 17480413 | ID=Msa0011590-mRNA-1:exon:6358;Parent=Msa0011590-mRNA-1 |
| chr1_1 | exon | 17480715 | 17480929 | 17480715 | ID=Msa0011590-mRNA-1:exon:6357;Parent=Msa0011590-mRNA-1 |
| chr1_1 | five_prime_UTR | 17480856 | 17480929 | 17480856 | ID=Msa0011590-mRNA-1:five_prime_utr;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17480715 | 17480855 | 17480715 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17480413 | 17480520 | 17480413 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17480032 | 17480199 | 17480032 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17479204 | 17479503 | 17479204 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17478967 | 17479046 | 17478967 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17478668 | 17478752 | 17478668 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17478326 | 17478544 | 17478326 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17477586 | 17477645 | 17477586 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17475834 | 17475913 | 17475834 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17475285 | 17475604 | 17475285 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17475109 | 17475200 | 17475109 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17474890 | 17475019 | 17474890 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17473390 | 17474543 | 17473390 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17473020 | 17473312 | 17473020 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17472747 | 17472929 | 17472747 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | CDS | 17472509 | 17472644 | 17472509 | ID=Msa0011590-mRNA-1:cds;Parent=Msa0011590-mRNA-1 |
| chr1_1 | three_prime_UTR | 17472283 | 17472508 | 17472283 | ID=Msa0011590-mRNA-1:three_prime_utr;Parent=Msa0011590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
