AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037700 MtrunA17_Chr7g0275361 100.000 148 0 0 1 148 1 148 8.29e-110 308
Msa1037700 MtrunA17_Chr3g0108261 97.297 148 4 0 1 148 1 148 2.12e-107 302
Msa1037700 MtrunA17_Chr5g0432831 96.622 148 5 0 1 148 1 148 9.63e-107 300
Msa1037700 MtrunA17_Chr1g0154011 92.568 148 11 0 1 148 1 148 4.04e-103 291
Msa1037700 MtrunA17_Chr4g0037011 92.568 148 11 0 1 148 1 148 7.71e-103 290
Msa1037700 MtrunA17_Chr8g0369311 92.568 148 11 0 1 148 57 204 5.53e-102 290
Msa1037700 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 3.45e-56 173
Msa1037700 MtrunA17_Chr2g0316201 48.966 145 74 0 4 148 8 152 1.66e-47 150
Msa1037700 MtrunA17_Chr2g0316211 48.611 144 74 0 5 148 9 152 2.04e-46 148
Msa1037700 MtrunA17_Chr8g0362321 45.890 146 74 1 2 142 5 150 1.41e-45 145
Msa1037700 MtrunA17_Chr4g0060351 45.205 146 75 1 2 142 5 150 7.35e-45 144
Msa1037700 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 4.02e-42 138
Msa1037700 MtrunA17_Chr3g0139901 40.136 147 84 3 5 147 7 153 7.88e-34 116
Msa1037700 MtrunA17_Chr4g0038891 43.548 124 70 0 4 127 35 158 1.40e-33 116
Msa1037700 MtrunA17_Chr1g0199951 44.882 127 69 1 3 128 43 169 1.54e-32 114
Msa1037700 MtrunA17_Chr5g0396451 40.458 131 77 1 4 134 35 164 7.57e-32 111
Msa1037700 MtrunA17_Chr4g0053191 36.184 152 90 2 1 145 4 155 1.50e-29 105
Msa1037700 MtrunA17_Chr4g0031181 36.567 134 71 2 15 134 18 151 6.22e-29 103
Msa1037700 MtrunA17_Chr5g0401831 33.553 152 94 2 1 145 4 155 1.33e-26 97.8
Msa1037700 MtrunA17_Chr8g0348701 37.398 123 75 2 26 146 25 147 2.21e-26 98.2
Msa1037700 MtrunA17_Chr2g0328001 34.722 144 80 2 15 144 18 161 2.56e-26 97.4
Msa1037700 MtrunA17_Chr5g0403591 36.029 136 84 2 5 139 33 166 4.61e-26 97.1
Msa1037700 MtrunA17_Chr8g0387131 35.036 137 87 2 12 146 11 147 3.63e-25 94.7
Msa1037700 MtrunA17_Chr7g0254701 34.266 143 94 0 4 146 13 155 1.15e-24 95.5
Msa1037700 MtrunA17_Chr4g0059291 30.894 123 83 2 26 146 25 147 2.95e-22 87.4
Msa1037700 MtrunA17_Chr8g0372391 39.806 103 60 2 1 102 15 116 2.58e-20 81.6
Msa1037700 MtrunA17_Chr5g0404931 37.864 103 62 2 1 102 15 116 5.00e-19 78.6
Msa1037700 MtrunA17_Chr4g0068301 34.454 119 68 4 2 114 11 125 3.67e-18 79.0
Msa1037700 MtrunA17_Chr8g0376111 31.373 153 87 5 4 144 43 189 1.06e-17 77.8
Msa1037700 MtrunA17_Chr7g0233631 36.066 122 68 3 4 115 38 159 2.08e-16 74.3
Msa1037700 MtrunA17_Chr7g0233611 36.066 122 68 3 4 115 38 159 4.12e-16 73.6
Msa1037700 MtrunA17_Chr8g0345331 32.479 117 70 3 4 115 8 120 9.13e-16 71.6
Msa1037700 MtrunA17_Chr7g0222941 30.894 123 75 3 3 115 90 212 1.25e-14 68.6
Msa1037700 MtrunA17_Chr4g0047301 30.667 150 91 4 4 143 672 818 1.93e-14 69.3
Msa1037700 MtrunA17_Chr2g0282211 28.289 152 96 4 3 144 681 829 1.85e-13 66.6
Msa1037700 MtrunA17_Chr4g0045101 30.464 151 89 6 4 143 37 182 2.19e-13 65.9
Msa1037700 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 6.07e-13 62.0
Msa1037700 MtrunA17_Chr2g0317631 30.081 123 76 3 3 115 306 428 1.85e-12 63.5
Msa1037700 MtrunA17_Chr8g0376201 31.707 123 74 3 3 115 192 314 4.15e-12 62.4
Msa1037700 MtrunA17_Chr1g0198021 28.455 123 78 3 3 115 137 259 5.08e-12 62.4
Msa1037700 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 1.16e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037700 AT1G64230.2 96.622 148 5 0 1 148 1 148 2.80e-107 302
Msa1037700 AT1G64230.1 96.622 148 5 0 1 148 1 148 2.80e-107 302
Msa1037700 AT5G53300.2 96.622 148 5 0 1 148 1 148 8.11e-107 301
Msa1037700 AT5G53300.4 96.622 148 5 0 1 148 1 148 8.11e-107 301
Msa1037700 AT5G53300.1 96.622 148 5 0 1 148 1 148 8.11e-107 301
Msa1037700 AT4G27960.1 95.946 148 6 0 1 148 1 148 2.13e-106 300
Msa1037700 AT5G41700.5 95.946 148 6 0 1 148 1 148 2.96e-106 299
Msa1037700 AT5G41700.2 95.946 148 6 0 1 148 1 148 2.96e-106 299
Msa1037700 AT5G41700.1 95.946 148 6 0 1 148 1 148 2.96e-106 299
Msa1037700 AT4G27960.2 95.946 148 6 0 1 148 31 178 6.20e-106 300
Msa1037700 AT3G08690.2 94.595 148 8 0 1 148 1 148 7.78e-106 298
Msa1037700 AT3G08690.1 94.595 148 8 0 1 148 1 148 7.78e-106 298
Msa1037700 AT5G41700.4 94.631 149 7 1 1 148 1 149 1.71e-103 292
Msa1037700 AT1G64230.3 90.446 157 6 1 1 148 1 157 9.04e-103 291
Msa1037700 AT5G56150.1 89.189 148 16 0 1 148 1 148 1.12e-99 283
Msa1037700 AT1G64230.5 74.737 190 6 1 1 148 1 190 2.12e-98 281
Msa1037700 AT1G64230.4 74.737 190 6 1 1 148 1 190 2.12e-98 281
Msa1037700 AT2G16740.1 86.395 147 20 0 1 147 1 147 4.33e-97 276
Msa1037700 AT3G08700.2 79.195 149 30 1 1 148 1 149 6.03e-87 251
Msa1037700 AT3G08700.1 79.195 149 30 1 1 148 1 149 6.03e-87 251
Msa1037700 AT5G41700.3 96.154 104 4 0 1 104 1 104 3.56e-72 213
Msa1037700 AT5G53300.3 94.495 109 4 1 1 107 1 109 1.13e-71 211
Msa1037700 AT5G56150.2 87.379 103 13 0 1 103 1 103 1.12e-65 196
Msa1037700 AT3G13550.1 48.276 145 75 0 2 146 37 181 7.75e-53 166
Msa1037700 AT1G16890.2 49.655 145 73 0 4 148 8 152 3.94e-48 152
Msa1037700 AT1G78870.2 48.966 145 74 0 4 148 8 152 3.14e-47 150
Msa1037700 AT5G62540.1 50.000 134 67 0 2 135 5 138 3.13e-46 147
Msa1037700 AT1G16890.3 47.403 154 72 1 4 148 8 161 2.15e-45 146
Msa1037700 AT1G14400.1 45.890 146 74 1 2 142 5 150 3.92e-45 145
Msa1037700 AT1G14400.2 45.890 146 74 1 2 142 5 150 3.92e-45 145
Msa1037700 AT2G02760.1 45.205 146 75 1 2 142 5 150 8.42e-45 144
Msa1037700 AT2G02760.2 45.205 146 75 1 2 142 5 150 8.42e-45 144
Msa1037700 AT2G02760.4 45.205 146 75 1 2 142 5 150 8.42e-45 144
Msa1037700 AT2G02760.3 45.205 146 75 1 2 142 5 150 8.42e-45 144
Msa1037700 AT1G36340.2 48.276 145 74 1 2 146 9 152 1.54e-44 143
Msa1037700 AT1G36340.1 48.276 145 74 1 2 146 9 152 1.54e-44 143
Msa1037700 AT3G13550.2 50.000 114 57 0 2 115 37 150 1.21e-41 137
Msa1037700 AT1G16890.1 52.101 119 57 0 30 148 1 119 5.24e-41 133
Msa1037700 AT1G78870.4 52.101 119 57 0 30 148 1 119 6.52e-41 133
Msa1037700 AT5G50870.1 45.833 144 76 2 5 146 6 149 4.58e-39 130
Msa1037700 AT1G78870.1 51.667 120 57 1 30 148 1 120 4.97e-39 128
Msa1037700 AT2G32790.1 48.684 152 69 4 2 148 30 177 9.01e-36 122
Msa1037700 AT5G50870.2 42.581 155 76 3 5 146 6 160 1.23e-35 122
Msa1037700 AT3G24515.1 44.586 157 74 3 3 146 8 164 2.29e-35 126
Msa1037700 AT3G24515.3 46.721 122 61 1 29 146 68 189 1.22e-32 119
Msa1037700 AT5G25760.1 38.776 147 86 3 5 147 7 153 2.74e-32 112
Msa1037700 AT5G25760.2 38.776 147 86 3 5 147 7 153 2.74e-32 112
Msa1037700 AT1G78870.3 48.571 105 54 0 4 108 8 112 5.31e-32 110
Msa1037700 AT3G20060.1 41.935 124 72 0 4 127 39 162 1.88e-30 108
Msa1037700 AT1G50490.1 42.742 124 71 0 4 127 38 161 6.27e-30 107
Msa1037700 AT3G20060.2 42.727 110 63 0 22 131 12 121 7.27e-29 103
Msa1037700 AT3G55380.1 37.313 134 70 2 15 134 19 152 1.84e-28 103
Msa1037700 AT2G46030.5 36.486 148 91 3 1 146 1 147 2.72e-28 103
Msa1037700 AT2G46030.1 36.486 148 91 3 1 146 1 147 2.72e-28 103
Msa1037700 AT2G46030.3 36.486 148 91 3 1 146 73 219 6.71e-28 103
Msa1037700 AT2G46030.4 39.024 123 73 2 26 146 28 150 9.62e-28 102
Msa1037700 AT2G46030.2 39.024 123 73 2 26 146 28 150 9.62e-28 102
Msa1037700 AT5G05080.2 37.063 143 90 0 4 146 13 155 1.46e-27 103
Msa1037700 AT5G05080.3 37.063 143 90 0 4 146 13 155 1.46e-27 103
Msa1037700 AT5G05080.1 37.063 143 90 0 4 146 13 155 1.46e-27 103
Msa1037700 AT5G05080.4 37.063 143 90 0 4 146 13 155 1.46e-27 103
Msa1037700 AT3G57870.1 34.868 152 92 2 1 145 5 156 2.12e-27 100
Msa1037700 AT5G59300.1 35.417 144 79 2 15 144 18 161 7.62e-27 99.0
Msa1037700 AT3G46460.1 34.722 144 80 2 15 144 18 161 1.25e-26 98.6
Msa1037700 AT5G41340.1 38.211 123 74 2 26 146 25 147 1.32e-26 99.0
Msa1037700 AT1G63800.2 38.211 123 74 2 26 146 10 132 1.78e-26 98.2
Msa1037700 AT1G63800.1 38.211 123 74 2 26 146 25 147 2.07e-26 98.6
Msa1037700 AT4G36800.2 36.496 137 82 3 5 139 34 167 2.17e-26 98.6
Msa1037700 AT4G36800.1 36.496 137 82 3 5 139 34 167 2.17e-26 98.6
Msa1037700 AT5G41340.2 40.385 104 60 2 45 146 9 112 1.39e-23 90.1
Msa1037700 AT2G18600.1 34.307 137 85 3 5 139 35 168 5.99e-23 89.7
Msa1037700 AT2G18600.2 34.307 137 85 3 5 139 35 168 5.99e-23 89.7
Msa1037700 AT3G55380.2 29.586 169 71 3 15 135 19 187 2.86e-21 85.5
Msa1037700 AT3G17000.1 36.975 119 65 4 2 114 12 126 5.94e-20 84.0
Msa1037700 AT1G75440.1 39.815 108 59 3 1 107 15 117 7.06e-20 80.9
Msa1037700 AT1G45050.1 38.835 103 61 2 1 102 15 116 2.37e-19 79.7
Msa1037700 AT5G42990.1 39.806 103 60 2 1 102 15 116 3.96e-19 79.0
Msa1037700 AT4G36410.1 36.111 108 63 3 1 107 15 117 2.77e-18 77.0
Msa1037700 AT3G46460.3 30.631 111 64 1 47 144 9 119 5.49e-17 72.4
Msa1037700 AT3G46460.2 30.631 111 64 1 47 144 9 119 5.49e-17 72.4
Msa1037700 AT1G17280.9 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.7 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.6 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.2 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.5 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.3 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.1 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT1G17280.8 34.188 117 68 3 4 115 8 120 6.86e-17 74.7
Msa1037700 AT5G50430.1 34.188 117 68 3 4 115 8 120 8.48e-17 74.7
Msa1037700 AT5G50430.2 34.188 117 68 3 4 115 8 120 8.48e-17 74.7
Msa1037700 AT1G17280.4 31.707 123 69 3 4 115 8 126 1.64e-15 71.2
Msa1037700 AT1G45050.2 35.955 89 55 2 1 88 15 102 1.01e-12 61.2
Msa1037700 AT3G15355.1 28.289 152 96 4 3 144 334 482 1.28e-11 61.6
Msa1037700 AT1G53025.2 30.328 122 75 3 4 115 274 395 3.43e-11 60.5
Msa1037700 AT1G53025.1 30.328 122 75 3 4 115 274 395 3.54e-11 60.5
Msa1037700 AT2G33770.1 31.183 93 61 2 4 94 665 756 7.48e-11 59.3

Find 82 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGATATTAATATTAT+TGG 0.139100 7_1:+74419721 None:intergenic
CTACCATTGCTGTTGATATT+TGG 0.157251 7_1:+74421068 None:intergenic
TTCTCTTGCAGGTTGCATTT+AGG 0.242066 7_1:-74421106 Msa1037700:intron
TCTACCCTTCAATATGTTAA+AGG 0.256916 7_1:+74419824 None:intergenic
GATATGATATTAATATTATT+GGG 0.302274 7_1:+74419722 None:intergenic
TACCATTGCTGTTGATATTT+GGG 0.310209 7_1:+74421069 None:intergenic
TCATTGGCAAGCAACTATAA+TGG 0.311891 7_1:-74421421 Msa1037700:CDS
CCGAGCAGTGGTTTCATACT+TGG 0.316742 7_1:+74420077 None:intergenic
CCCCGCTTTGACAATATCTA+AGG 0.320617 7_1:-74421012 Msa1037700:intron
CTTAAAATGCAGAATCTTAC+CGG 0.334161 7_1:+74419949 None:intergenic
TTGTACATATGAGCTATTTC+AGG 0.338906 7_1:+74420111 None:intergenic
TCAGGCACTAAGGGATCATC+TGG 0.351772 7_1:+74420129 None:intergenic
CATTGGCAAGCAACTATAAT+GGG 0.363377 7_1:-74421420 Msa1037700:CDS
CCGCTTGGAGGCCATGGAAT+TGG 0.370420 7_1:+74422893 None:intergenic
ATCCATTTGTTCCCTGTTGA+CGG 0.377667 7_1:-74420160 Msa1037700:CDS
CTGGGTTTGGATCCGTCAAC+AGG 0.381343 7_1:+74420148 None:intergenic
AATACCTTGGGTGGCTTGAA+TGG 0.396161 7_1:+74421333 None:intergenic
AAATACCCTACCGGAGCTTC+CGG 0.406576 7_1:-74419968 Msa1037700:three_prime_UTR
TCAACCAACAAGAAAAGAAA+AGG 0.420088 7_1:+74422987 None:intergenic
CCTCCGGCATAAGGACTATC+GGG 0.424122 7_1:+74421393 None:intergenic
CATTTGTCTTGATATCTTGA+AGG 0.425170 7_1:-74421045 Msa1037700:CDS
TTCTTGTTGGTTGAAGAGGC+AGG 0.433334 7_1:-74422978 Msa1037700:five_prime_UTR
TGAAACATGTCTTCTGCTAC+AGG 0.438785 7_1:+74421441 None:intergenic
GGTGGCTTGAATGGATAATC+AGG 0.441447 7_1:+74421342 None:intergenic
TCCTGCCTTTAACATATTGA+AGG 0.445265 7_1:-74419829 Msa1037700:three_prime_UTR
CCTCCAACCTCTTGCAGCGC+TGG 0.445639 7_1:-74422837 Msa1037700:intron
ATGAGCTATTTCAGGCACTA+AGG 0.452215 7_1:+74420119 None:intergenic
ACATCATGACACTTGACAAA+TGG 0.455050 7_1:+74419879 None:intergenic
ATCCGTCAACAGGGAACAAA+TGG 0.455293 7_1:+74420158 None:intergenic
TAGCAGAAGACATGTTTCAT+TGG 0.456534 7_1:-74421437 Msa1037700:CDS
ACCTTAGATATTGTCAAAGC+GGG 0.466865 7_1:+74421011 None:intergenic
TCCTCCGGCATAAGGACTAT+CGG 0.468008 7_1:+74421392 None:intergenic
TTGGATGAGCAATCACTTGT+TGG 0.471250 7_1:-74419922 Msa1037700:three_prime_UTR
CACTTGACAAATGGAACTAA+AGG 0.479533 7_1:+74419888 None:intergenic
ATGAAACCACTGCTCGGAGC+TGG 0.483029 7_1:-74420071 Msa1037700:CDS
TTCCTTGAGGATCCGCTTGG+AGG 0.486492 7_1:+74422881 None:intergenic
ACTAAGGGATCATCTGGGTT+TGG 0.496633 7_1:+74420135 None:intergenic
AAAGTTGAAGAGAGAGGGAA+AGG 0.496771 7_1:+74422952 None:intergenic
CAGAATCTTACCGGAAGCTC+CGG 0.502715 7_1:+74419958 None:intergenic
GATATTTGGGTGGAAAACTT+TGG 0.515591 7_1:+74421082 None:intergenic
CCCTTCAATATGTTAAAGGC+AGG 0.522335 7_1:+74419828 None:intergenic
AAAGGGAAATTCCAATTCCA+TGG 0.525940 7_1:-74422904 Msa1037700:exon
GAGGATCCGCTTGGAGGCCA+TGG 0.529842 7_1:+74422887 None:intergenic
TTACCAGCGCTGCAAGAGGT+TGG 0.534725 7_1:+74422834 None:intergenic
TTTAGATCGAAAACTTCGAA+AGG 0.536387 7_1:-74422922 Msa1037700:five_prime_UTR
TGGACTCAGAAGTATGCAAT+GGG 0.546656 7_1:-74420051 Msa1037700:CDS
CAACCAACAAGAAAAGAAAA+GGG 0.547057 7_1:+74422988 None:intergenic
CAATGGGCTAGCAAGAATGT+TGG 0.547649 7_1:-74420035 Msa1037700:exon
GAAGGTCCTTGAGTTCCTTG+AGG 0.550730 7_1:+74422868 None:intergenic
TTAGATCGAAAACTTCGAAA+GGG 0.552269 7_1:-74422921 Msa1037700:five_prime_UTR
CTCATATGTACAAGACAGAC+AGG 0.552335 7_1:-74420101 Msa1037700:CDS
CTGAGTCCAGCTCCGAGCAG+TGG 0.563687 7_1:+74420065 None:intergenic
TGAGCTATTTCAGGCACTAA+GGG 0.565316 7_1:+74420120 None:intergenic
GAGTTCCTTGAGGATCCGCT+TGG 0.568666 7_1:+74422878 None:intergenic
CCAGCGCTGCAAGAGGTTGG+AGG 0.569494 7_1:+74422837 None:intergenic
CCTGCCTTTAACATATTGAA+GGG 0.573198 7_1:-74419828 Msa1037700:three_prime_UTR
CTGGACTCAGAAGTATGCAA+TGG 0.576388 7_1:-74420052 Msa1037700:CDS
CATTGCTGTTGATATTTGGG+TGG 0.580692 7_1:+74421072 None:intergenic
AAACTGTCAAAATACCCTAC+CGG 0.582333 7_1:-74419977 Msa1037700:three_prime_UTR
CACCCAAATATCAACAGCAA+TGG 0.585534 7_1:-74421071 Msa1037700:CDS
ATAATCAGGAGGAAAATGAA+TGG 0.590246 7_1:+74421356 None:intergenic
AAAATTACCAGCGCTGCAAG+AGG 0.599526 7_1:+74422830 None:intergenic
CCCGATAGTCCTTATGCCGG+AGG 0.599842 7_1:-74421393 Msa1037700:CDS
CCAAGTATGAAACCACTGCT+CGG 0.606579 7_1:-74420077 Msa1037700:CDS
TTGATATCTTGAAGGAGCAG+TGG 0.609569 7_1:-74421037 Msa1037700:CDS
AGGTTGGAGGATCTTTCTGA+AGG 0.613443 7_1:+74422850 None:intergenic
ACAAAGTCCAATACCTTGGG+TGG 0.615790 7_1:+74421324 None:intergenic
GCGGATCCTCAAGGAACTCA+AGG 0.617012 7_1:-74422874 Msa1037700:CDS
TCTTACCGGAAGCTCCGGTA+GGG 0.623253 7_1:+74419963 None:intergenic
GGCCTCCAAGCGGATCCTCA+AGG 0.623432 7_1:-74422883 Msa1037700:CDS
ATCTTACCGGAAGCTCCGGT+AGG 0.624374 7_1:+74419962 None:intergenic
CAGGCACTAAGGGATCATCT+GGG 0.628144 7_1:+74420130 None:intergenic
AACCTTAGATATTGTCAAAG+CGG 0.632820 7_1:+74421010 None:intergenic
GAAACATGTCTTCTGCTACA+GGG 0.642755 7_1:+74421442 None:intergenic
TGGGTTTGGATCCGTCAACA+GGG 0.654519 7_1:+74420149 None:intergenic
GGCTTGAATGGATAATCAGG+AGG 0.662651 7_1:+74421345 None:intergenic
TTATCCATTCAAGCCACCCA+AGG 0.669594 7_1:-74421337 Msa1037700:intron
CTCCGGCATAAGGACTATCG+GGG 0.681361 7_1:+74421394 None:intergenic
CCTTAGATATTGTCAAAGCG+GGG 0.699087 7_1:+74421012 None:intergenic
CCAATTCCATGGCCTCCAAG+CGG 0.707253 7_1:-74422893 Msa1037700:exon
CCGGCATAAGGACTATCGGG+GGG 0.720439 7_1:+74421396 None:intergenic
TCCGGCATAAGGACTATCGG+GGG 0.723439 7_1:+74421395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTAATATTGTTAA+AGG - chr7_1:74420099-74420118 Msa1037700:CDS 10.0%
!! TATATAGGTAAAAAAAAAAA+GGG + chr7_1:74420595-74420614 None:intergenic 10.0%
!! ATATATAGGTAAAAAAAAAA+AGG + chr7_1:74420596-74420615 None:intergenic 10.0%
!! GATATGATATTAATATTATT+GGG + chr7_1:74422981-74423000 None:intergenic 10.0%
!! AGATATGATATTAATATTAT+TGG + chr7_1:74422982-74423001 None:intergenic 10.0%
!! TTAGTTATACAATCATATAT+AGG + chr7_1:74420610-74420629 None:intergenic 15.0%
!!! ATTTTGCACTTATATCTATA+TGG - chr7_1:74419950-74419969 Msa1037700:three_prime_UTR 20.0%
!!! TTTTGCACTTATATCTATAT+GGG - chr7_1:74419951-74419970 Msa1037700:three_prime_UTR 20.0%
!! TAGAAAAAGTTTAGTATGTT+TGG - chr7_1:74420155-74420174 Msa1037700:CDS 20.0%
!!! TGAGTTGAAAAATAAATTCA+AGG + chr7_1:74420379-74420398 None:intergenic 20.0%
!!! TAAATATATTTTTGCAACTC+AGG + chr7_1:74421113-74421132 None:intergenic 20.0%
!! ACCAATTTCAAAAAGATTAT+TGG - chr7_1:74422061-74422080 Msa1037700:intron 20.0%
!!! ACCAATAATCTTTTTGAAAT+TGG + chr7_1:74422065-74422084 None:intergenic 20.0%
! AAAAGTTTAGTATGTTTGGT+TGG - chr7_1:74420159-74420178 Msa1037700:CDS 25.0%
!!! GAAATTGATTTTGACATGTT+TGG - chr7_1:74420263-74420282 Msa1037700:intron 25.0%
! TAGATCAGAATAAATTCTTG+AGG + chr7_1:74420314-74420333 None:intergenic 25.0%
! ACCTATATATGATTGTATGA+GGG - chr7_1:74420398-74420417 Msa1037700:intron 25.0%
! TAACTTGAACTAGAATTTGT+AGG - chr7_1:74420708-74420727 Msa1037700:intron 25.0%
!!! TTGTTCAATACACTTTTTCA+TGG - chr7_1:74420767-74420786 Msa1037700:intron 25.0%
! CGTTCTATTAAGAATTATCA+TGG - chr7_1:74420959-74420978 Msa1037700:intron 25.0%
! AATTCAGTTATATTTGTCTG+TGG - chr7_1:74420994-74421013 Msa1037700:intron 25.0%
!!! TTTTAACTTTTTTCTCTTGC+AGG - chr7_1:74421583-74421602 Msa1037700:intron 25.0%
! AAAAAAAAATTTAGCGCAAG+TGG + chr7_1:74421756-74421775 None:intergenic 25.0%
!!! ACTTGCGCTAAATTTTTTTT+TGG - chr7_1:74421755-74421774 Msa1037700:intron 25.0%
!! AAATACATTTTTGCAACTCT+AGG - chr7_1:74421795-74421814 Msa1037700:intron 25.0%
! ATTCATCATAAATGCAAAAC+TGG + chr7_1:74422037-74422056 None:intergenic 25.0%
!!! ATGTGTTGATGATGTTTATT+CGG - chr7_1:74422207-74422226 Msa1037700:intron 25.0%
!!! GTATGCTTTGAAATATCTTA+AGG - chr7_1:74422255-74422274 Msa1037700:intron 25.0%
!! TTTTGTTGATGTGATACAAT+TGG - chr7_1:74422350-74422369 Msa1037700:intron 25.0%
! ATAAAAGAATGACACACTAA+GGG + chr7_1:74422419-74422438 None:intergenic 25.0%
!! TATTACTACTGTTTCTTAAG+TGG - chr7_1:74422479-74422498 Msa1037700:intron 25.0%
!! ATTACTACTGTTTCTTAAGT+GGG - chr7_1:74422480-74422499 Msa1037700:intron 25.0%
AAAAACTCAATTAGTGGTAG+TGG + chr7_1:74419688-74419707 None:intergenic 30.0%
GGAAAGAAAAACTCAATTAG+TGG + chr7_1:74419694-74419713 None:intergenic 30.0%
! TTTCCCTTTTCTTTTCTTGT+TGG - chr7_1:74419709-74419728 Msa1037700:three_prime_UTR 30.0%
CAACCAACAAGAAAAGAAAA+GGG + chr7_1:74419715-74419734 None:intergenic 30.0%
TCAACCAACAAGAAAAGAAA+AGG + chr7_1:74419716-74419735 None:intergenic 30.0%
GTAAAAAAGTTGAAGAGAGA+GGG + chr7_1:74419756-74419775 None:intergenic 30.0%
AGTAAAAAAGTTGAAGAGAG+AGG + chr7_1:74419757-74419776 None:intergenic 30.0%
TTTAGATCGAAAACTTCGAA+AGG - chr7_1:74419778-74419797 Msa1037700:three_prime_UTR 30.0%
TTAGATCGAAAACTTCGAAA+GGG - chr7_1:74419779-74419798 Msa1037700:three_prime_UTR 30.0%
!! TCGTTTTTCCATTTGTATCA+TGG - chr7_1:74419980-74419999 Msa1037700:three_prime_UTR 30.0%
! CGTTTTTCCATTTGTATCAT+GGG - chr7_1:74419981-74420000 Msa1037700:three_prime_UTR 30.0%
TAACAAACCCATGATACAAA+TGG + chr7_1:74419991-74420010 None:intergenic 30.0%
!! TTTCTGTTGCTAGTTTGTTT+AGG - chr7_1:74420029-74420048 Msa1037700:exon 30.0%
!! GACATGTTTGATTTCACTTT+TGG - chr7_1:74420222-74420241 Msa1037700:intron 30.0%
!! ATGTTTGATTTCACTTTTGG+AGG - chr7_1:74420225-74420244 Msa1037700:intron 30.0%
! GATCTAAAGCTAGAATTTGT+AGG - chr7_1:74420328-74420347 Msa1037700:intron 30.0%
CACCTATATATGATTGTATG+AGG - chr7_1:74420397-74420416 Msa1037700:intron 30.0%
CCTATATATGATTGTATGAG+GGG - chr7_1:74420399-74420418 Msa1037700:intron 30.0%
TAAAAAAAAAAAGGGCAACC+CGG + chr7_1:74420587-74420606 None:intergenic 30.0%
CTTTACCTCAAACTTACTTT+CGG - chr7_1:74420640-74420659 Msa1037700:intron 30.0%
!! GTGGTGTTACAAATTGATTA+TGG + chr7_1:74420666-74420685 None:intergenic 30.0%
! AAAAACAGGTTTTCAGCTTT+AGG + chr7_1:74420913-74420932 None:intergenic 30.0%
! TAAAGCTGAAAACCTGTTTT+TGG - chr7_1:74420912-74420931 Msa1037700:intron 30.0%
TCTTAATAGAACGCAAAAGA+GGG + chr7_1:74420952-74420971 None:intergenic 30.0%
TTCTTAATAGAACGCAAAAG+AGG + chr7_1:74420953-74420972 None:intergenic 30.0%
TTACAAGACATGCATCTAAT+TGG + chr7_1:74421029-74421048 None:intergenic 30.0%
ATAATCAGGAGGAAAATGAA+TGG + chr7_1:74421347-74421366 None:intergenic 30.0%
AAAACAAAGTCCAATACCTT+GGG + chr7_1:74421382-74421401 None:intergenic 30.0%
!!! TTTGTTTTGCTTGACATATC+AGG - chr7_1:74421394-74421413 Msa1037700:CDS 30.0%
! TACCATTGCTGTTGATATTT+GGG + chr7_1:74421634-74421653 None:intergenic 30.0%
CATTTGTCTTGATATCTTGA+AGG - chr7_1:74421655-74421674 Msa1037700:intron 30.0%
AACCTTAGATATTGTCAAAG+CGG + chr7_1:74421693-74421712 None:intergenic 30.0%
TTGAGTTAACAAGTTAAGCA+TGG + chr7_1:74421719-74421738 None:intergenic 30.0%
TGGTAACTTTGGACTTTATT+AGG - chr7_1:74421844-74421863 Msa1037700:intron 30.0%
GGACTTTATTAGGTTTACAA+AGG - chr7_1:74421854-74421873 Msa1037700:intron 30.0%
GGACTTTATTAGGTTTACAA+AGG - chr7_1:74421854-74421873 Msa1037700:intron 30.0%
TAAAAGAATGACACACTAAG+GGG + chr7_1:74422418-74422437 None:intergenic 30.0%
GATAAAAGAATGACACACTA+AGG + chr7_1:74422420-74422439 None:intergenic 30.0%
! TCTTTTATCATTGCAATGCA+TGG - chr7_1:74422431-74422450 Msa1037700:intron 30.0%
! TTGTACATATGAGCTATTTC+AGG + chr7_1:74422592-74422611 None:intergenic 30.0%
!!! GACAGTTTTTAGCATATAAG+AGG + chr7_1:74422711-74422730 None:intergenic 30.0%
CTTAAAATGCAGAATCTTAC+CGG + chr7_1:74422754-74422773 None:intergenic 30.0%
! TAAGATTCTGCATTTTAAGC+TGG - chr7_1:74422755-74422774 Msa1037700:intron 30.0%
TCTACCCTTCAATATGTTAA+AGG + chr7_1:74422879-74422898 None:intergenic 30.0%
!! TCTTTTCTTGTTGGTTGAAG+AGG - chr7_1:74419718-74419737 Msa1037700:three_prime_UTR 35.0%
AAAGGGAAATTCCAATTCCA+TGG - chr7_1:74419796-74419815 Msa1037700:three_prime_UTR 35.0%
ATTCATAGATCCAAGGATGA+GGG + chr7_1:74419932-74419951 None:intergenic 35.0%
AATTCATAGATCCAAGGATG+AGG + chr7_1:74419933-74419952 None:intergenic 35.0%
GTGCAAAATTCATAGATCCA+AGG + chr7_1:74419939-74419958 None:intergenic 35.0%
! GCAGCAAAATTTGTTTGTAG+AGG - chr7_1:74420194-74420213 Msa1037700:intron 35.0%
TTGGAGGATGCAAAATTGAT+TGG - chr7_1:74420241-74420260 Msa1037700:intron 35.0%
CCCCTCATACAATCATATAT+AGG + chr7_1:74420402-74420421 None:intergenic 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr7_1:74420440-74420459 Msa1037700:intron 35.0%
TCTGTGTGTGTTTAGTTATG+TGG + chr7_1:74420685-74420704 None:intergenic 35.0%
TAGCAGAAGACATGTTTCAT+TGG - chr7_1:74421263-74421282 Msa1037700:intron 35.0%
TCATTGGCAAGCAACTATAA+TGG - chr7_1:74421279-74421298 Msa1037700:intron 35.0%
CATTGGCAAGCAACTATAAT+GGG - chr7_1:74421280-74421299 Msa1037700:intron 35.0%
CAAAACAAAGTCCAATACCT+TGG + chr7_1:74421383-74421402 None:intergenic 35.0%
GAGGAGGTTAAGTATCATAA+AGG + chr7_1:74421463-74421482 None:intergenic 35.0%
! TCCAAATACAAGCTTTGATC+TGG - chr7_1:74421517-74421536 Msa1037700:intron 35.0%
GATATTTGGGTGGAAAACTT+TGG + chr7_1:74421621-74421640 None:intergenic 35.0%
! CTACCATTGCTGTTGATATT+TGG + chr7_1:74421635-74421654 None:intergenic 35.0%
ACCTTAGATATTGTCAAAGC+GGG + chr7_1:74421692-74421711 None:intergenic 35.0%
!! TCTAGGATATGTGTGTGTTT+TGG - chr7_1:74421812-74421831 Msa1037700:intron 35.0%
GATGTTTACTCTGCATAATC+AGG - chr7_1:74421948-74421967 Msa1037700:intron 35.0%
TCCTGAAGTTGGACTTTATT+AGG - chr7_1:74422113-74422132 Msa1037700:intron 35.0%
ACCTAATAAAGTCCAACTTC+AGG + chr7_1:74422117-74422136 None:intergenic 35.0%
GATGTTTATTCGGCATAATC+TGG - chr7_1:74422217-74422236 Msa1037700:intron 35.0%
GAAAGACCTTACAAGTAAAC+TGG + chr7_1:74422287-74422306 None:intergenic 35.0%
ATTCGTCGTAAATGCATAAC+TGG + chr7_1:74422309-74422328 None:intergenic 35.0%
GGAATTTATAGCGACAACTT+AGG + chr7_1:74422392-74422411 None:intergenic 35.0%
! GGTTTGTGTTTGGTTATTTC+AGG - chr7_1:74422510-74422529 Msa1037700:intron 35.0%
AAACTGTCAAAATACCCTAC+CGG - chr7_1:74422723-74422742 Msa1037700:intron 35.0%
! ATTCTGCATTTTAAGCTGGT+TGG - chr7_1:74422759-74422778 Msa1037700:intron 35.0%
CACTTGACAAATGGAACTAA+AGG + chr7_1:74422815-74422834 None:intergenic 35.0%
ACATCATGACACTTGACAAA+TGG + chr7_1:74422824-74422843 None:intergenic 35.0%
TCCTGCCTTTAACATATTGA+AGG - chr7_1:74422871-74422890 Msa1037700:CDS 35.0%
CCTGCCTTTAACATATTGAA+GGG - chr7_1:74422872-74422891 Msa1037700:CDS 35.0%
!! AATCGTTTTGTTACTCAGAC+AGG + chr7_1:74422914-74422933 None:intergenic 35.0%
AAAGTTGAAGAGAGAGGGAA+AGG + chr7_1:74419751-74419770 None:intergenic 40.0%
AAGCAGAAAATGGGGTTTGA+GGG + chr7_1:74419902-74419921 None:intergenic 40.0%
! GGTGTTTGAAGCAGAAAATG+GGG + chr7_1:74419910-74419929 None:intergenic 40.0%
! GGGTGTTTGAAGCAGAAAAT+GGG + chr7_1:74419911-74419930 None:intergenic 40.0%
TTCATAGATCCAAGGATGAG+GGG + chr7_1:74419931-74419950 None:intergenic 40.0%
AGCCTCTTGTGTAAAAAGCA+GGG - chr7_1:74420490-74420509 Msa1037700:intron 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr7_1:74420495-74420514 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr7_1:74420495-74420514 Msa1037700:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr7_1:74420521-74420540 Msa1037700:intron 40.0%
TATGGCCGAAAGTAAGTTTG+AGG + chr7_1:74420648-74420667 None:intergenic 40.0%
! GACGTTTGAAGTCCAAAAAC+AGG + chr7_1:74420927-74420946 None:intergenic 40.0%
! GTTTTATCCACTACCTTCAC+AGG - chr7_1:74421235-74421254 Msa1037700:intron 40.0%
GAAACATGTCTTCTGCTACA+GGG + chr7_1:74421261-74421280 None:intergenic 40.0%
TGAAACATGTCTTCTGCTAC+AGG + chr7_1:74421262-74421281 None:intergenic 40.0%
GGTAACTAGAAAAACTCCTC+CGG + chr7_1:74421326-74421345 None:intergenic 40.0%
ACTTAACCTCCTCTATTTCC+TGG - chr7_1:74421470-74421489 Msa1037700:intron 40.0%
! TTTTTCCAGCCAGGAAATAG+AGG + chr7_1:74421482-74421501 None:intergenic 40.0%
!!! CTCACAATTTTTTTCCAGCC+AGG + chr7_1:74421491-74421510 None:intergenic 40.0%
GCCAGATCAAAGCTTGTATT+TGG + chr7_1:74421521-74421540 None:intergenic 40.0%
TTCTCTTGCAGGTTGCATTT+AGG - chr7_1:74421594-74421613 Msa1037700:intron 40.0%
! CATTGCTGTTGATATTTGGG+TGG + chr7_1:74421631-74421650 None:intergenic 40.0%
CACCCAAATATCAACAGCAA+TGG - chr7_1:74421629-74421648 Msa1037700:intron 40.0%
TTGATATCTTGAAGGAGCAG+TGG - chr7_1:74421663-74421682 Msa1037700:intron 40.0%
CCTTAGATATTGTCAAAGCG+GGG + chr7_1:74421691-74421710 None:intergenic 40.0%
AACCTTCACAATCCTGAAGT+TGG - chr7_1:74422102-74422121 Msa1037700:intron 40.0%
TAGCTGCCAGTTTACTTGTA+AGG - chr7_1:74422278-74422297 Msa1037700:intron 40.0%
CGACAACTTAGGAATTGTGA+CGG + chr7_1:74422381-74422400 None:intergenic 40.0%
! ACTACTGTTTCTTAAGTGGG+TGG - chr7_1:74422483-74422502 Msa1037700:intron 40.0%
! CTACTGTTTCTTAAGTGGGT+GGG - chr7_1:74422484-74422503 Msa1037700:intron 40.0%
ATCCATTTGTTCCCTGTTGA+CGG - chr7_1:74422540-74422559 Msa1037700:intron 40.0%
! TGAGCTATTTCAGGCACTAA+GGG + chr7_1:74422583-74422602 None:intergenic 40.0%
! ATGAGCTATTTCAGGCACTA+AGG + chr7_1:74422584-74422603 None:intergenic 40.0%
CTCATATGTACAAGACAGAC+AGG - chr7_1:74422599-74422618 Msa1037700:intron 40.0%
! TGGACTCAGAAGTATGCAAT+GGG - chr7_1:74422649-74422668 Msa1037700:intron 40.0%
TTGGATGAGCAATCACTTGT+TGG - chr7_1:74422778-74422797 Msa1037700:intron 40.0%
CCCTTCAATATGTTAAAGGC+AGG + chr7_1:74422875-74422894 None:intergenic 40.0%
! TTCTTGTTGGTTGAAGAGGC+AGG - chr7_1:74419722-74419741 Msa1037700:three_prime_UTR 45.0%
AGGTTGGAGGATCTTTCTGA+AGG + chr7_1:74419853-74419872 None:intergenic 45.0%
AAAATTACCAGCGCTGCAAG+AGG + chr7_1:74419873-74419892 None:intergenic 45.0%
GAAGCAGAAAATGGGGTTTG+AGG + chr7_1:74419903-74419922 None:intergenic 45.0%
! GGGGTGTTTGAAGCAGAAAA+TGG + chr7_1:74419912-74419931 None:intergenic 45.0%
GATTGTATGAGGGGTAACCT+TGG - chr7_1:74420408-74420427 Msa1037700:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr7_1:74420444-74420463 Msa1037700:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr7_1:74420484-74420503 None:intergenic 45.0%
CAGCCTCTTGTGTAAAAAGC+AGG - chr7_1:74420489-74420508 Msa1037700:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7_1:74420517-74420536 Msa1037700:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr7_1:74420520-74420539 Msa1037700:intron 45.0%
AGAAAAACTCCTCCGGCATA+AGG + chr7_1:74421319-74421338 None:intergenic 45.0%
GGCTTGAATGGATAATCAGG+AGG + chr7_1:74421358-74421377 None:intergenic 45.0%
GGTGGCTTGAATGGATAATC+AGG + chr7_1:74421361-74421380 None:intergenic 45.0%
TTATCCATTCAAGCCACCCA+AGG - chr7_1:74421363-74421382 Msa1037700:CDS 45.0%
AATACCTTGGGTGGCTTGAA+TGG + chr7_1:74421370-74421389 None:intergenic 45.0%
ATTCAAGCCACCCAAGGTAT+TGG - chr7_1:74421369-74421388 Msa1037700:CDS 45.0%
ACAAAGTCCAATACCTTGGG+TGG + chr7_1:74421379-74421398 None:intergenic 45.0%
CCCCGCTTTGACAATATCTA+AGG - chr7_1:74421688-74421707 Msa1037700:intron 45.0%
!!! GTGTGTTTTGGTAGTGAGTC+TGG - chr7_1:74421824-74421843 Msa1037700:intron 45.0%
GGTAGTGAGTCTGGTAACTT+TGG - chr7_1:74421833-74421852 Msa1037700:intron 45.0%
GTCCAACTTCAGGATTGTGA+AGG + chr7_1:74422107-74422126 None:intergenic 45.0%
GAATGACACACTAAGGGGAA+CGG + chr7_1:74422413-74422432 None:intergenic 45.0%
GTTTCTTAAGTGGGTGGGAA+AGG - chr7_1:74422489-74422508 Msa1037700:intron 45.0%
ATCCGTCAACAGGGAACAAA+TGG + chr7_1:74422545-74422564 None:intergenic 45.0%
ACTAAGGGATCATCTGGGTT+TGG + chr7_1:74422568-74422587 None:intergenic 45.0%
CCAAGTATGAAACCACTGCT+CGG - chr7_1:74422623-74422642 Msa1037700:intron 45.0%
! CTGGACTCAGAAGTATGCAA+TGG - chr7_1:74422648-74422667 Msa1037700:intron 45.0%
!! CAATGGGCTAGCAAGAATGT+TGG - chr7_1:74422665-74422684 Msa1037700:intron 45.0%
!!! ATTCAAATTAAATTTTAAAA+AGG - chr7_1:74422327-74422346 Msa1037700:intron 5.0%
GAAGGTCCTTGAGTTCCTTG+AGG + chr7_1:74419835-74419854 None:intergenic 50.0%
CTTCAAACACCCCTCATCCT+TGG - chr7_1:74419919-74419938 Msa1037700:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr7_1:74420428-74420447 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr7_1:74420450-74420469 Msa1037700:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr7_1:74420451-74420470 Msa1037700:intron 50.0%
TCCTCCGGCATAAGGACTAT+CGG + chr7_1:74421311-74421330 None:intergenic 50.0%
AACCTCCTCTATTTCCTGGC+TGG - chr7_1:74421474-74421493 Msa1037700:intron 50.0%
TTCCAGCCAGGAAATAGAGG+AGG + chr7_1:74421479-74421498 None:intergenic 50.0%
GGGTGGGAAAGGTTTGTGTT+TGG - chr7_1:74422500-74422519 Msa1037700:intron 50.0%
TGGGTTTGGATCCGTCAACA+GGG + chr7_1:74422554-74422573 None:intergenic 50.0%
CAGGCACTAAGGGATCATCT+GGG + chr7_1:74422573-74422592 None:intergenic 50.0%
TCAGGCACTAAGGGATCATC+TGG + chr7_1:74422574-74422593 None:intergenic 50.0%
CCGAGCAGTGGTTTCATACT+TGG + chr7_1:74422626-74422645 None:intergenic 50.0%
AAATACCCTACCGGAGCTTC+CGG - chr7_1:74422732-74422751 Msa1037700:intron 50.0%
CAGAATCTTACCGGAAGCTC+CGG + chr7_1:74422745-74422764 None:intergenic 50.0%
CCAATTCCATGGCCTCCAAG+CGG - chr7_1:74419807-74419826 Msa1037700:three_prime_UTR 55.0%
TTCCTTGAGGATCCGCTTGG+AGG + chr7_1:74419822-74419841 None:intergenic 55.0%
GAGTTCCTTGAGGATCCGCT+TGG + chr7_1:74419825-74419844 None:intergenic 55.0%
GCGGATCCTCAAGGAACTCA+AGG - chr7_1:74419826-74419845 Msa1037700:three_prime_UTR 55.0%
TTACCAGCGCTGCAAGAGGT+TGG + chr7_1:74419869-74419888 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr7_1:74420463-74420482 Msa1037700:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr7_1:74420560-74420579 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr7_1:74420561-74420580 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr7_1:74420565-74420584 Msa1037700:intron 55.0%
TACAGGGCCTGTGAAGGTAG+TGG + chr7_1:74421245-74421264 None:intergenic 55.0%
TTCTGCTACAGGGCCTGTGA+AGG + chr7_1:74421251-74421270 None:intergenic 55.0%
TCCGGCATAAGGACTATCGG+GGG + chr7_1:74421308-74421327 None:intergenic 55.0%
CTCCGGCATAAGGACTATCG+GGG + chr7_1:74421309-74421328 None:intergenic 55.0%
CCTCCGGCATAAGGACTATC+GGG + chr7_1:74421310-74421329 None:intergenic 55.0%
CTGGGTTTGGATCCGTCAAC+AGG + chr7_1:74422555-74422574 None:intergenic 55.0%
ATGAAACCACTGCTCGGAGC+TGG - chr7_1:74422629-74422648 Msa1037700:intron 55.0%
TCTTACCGGAAGCTCCGGTA+GGG + chr7_1:74422740-74422759 None:intergenic 55.0%
ATCTTACCGGAAGCTCCGGT+AGG + chr7_1:74422741-74422760 None:intergenic 55.0%
CCGCTTGGAGGCCATGGAAT+TGG + chr7_1:74419810-74419829 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr7_1:74420417-74420436 Msa1037700:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7_1:74420533-74420552 Msa1037700:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr7_1:74420566-74420585 Msa1037700:intron 60.0%
CCGGCATAAGGACTATCGGG+GGG + chr7_1:74421307-74421326 None:intergenic 60.0%
CCCCCCGATAGTCCTTATGC+CGG - chr7_1:74421304-74421323 Msa1037700:intron 60.0%
CCCGATAGTCCTTATGCCGG+AGG - chr7_1:74421307-74421326 Msa1037700:intron 60.0%
GAGGATCCGCTTGGAGGCCA+TGG + chr7_1:74419816-74419835 None:intergenic 65.0%
GGCCTCCAAGCGGATCCTCA+AGG - chr7_1:74419817-74419836 Msa1037700:three_prime_UTR 65.0%
CCAGCGCTGCAAGAGGTTGG+AGG + chr7_1:74419866-74419885 None:intergenic 65.0%
CCTCCAACCTCTTGCAGCGC+TGG - chr7_1:74419863-74419882 Msa1037700:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7_1:74420535-74420554 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr7_1:74420548-74420567 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr7_1:74420549-74420568 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr7_1:74420548-74420567 Msa1037700:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr7_1:74420549-74420568 Msa1037700:intron 65.0%
CTGAGTCCAGCTCCGAGCAG+TGG + chr7_1:74422638-74422657 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr7_1:74420550-74420569 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr7_1:74420554-74420573 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr7_1:74420555-74420574 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74419682 74423040 74419682 ID=Msa1037700;Name=Msa1037700
chr7_1 mRNA 74419682 74423040 74419682 ID=Msa1037700-mRNA-1;Parent=Msa1037700;Name=Msa1037700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=133|1|1|1|1|1|4|365|148
chr7_1 exon 74419682 74420190 74419682 ID=Msa1037700-mRNA-1:exon:18754;Parent=Msa1037700-mRNA-1
chr7_1 exon 74421013 74421117 74421013 ID=Msa1037700-mRNA-1:exon:18753;Parent=Msa1037700-mRNA-1
chr7_1 exon 74421338 74421465 74421338 ID=Msa1037700-mRNA-1:exon:18752;Parent=Msa1037700-mRNA-1
chr7_1 exon 74422838 74423040 74422838 ID=Msa1037700-mRNA-1:exon:18751;Parent=Msa1037700-mRNA-1
chr7_1 five_prime_UTR 74422908 74423040 74422908 ID=Msa1037700-mRNA-1:five_prime_utr;Parent=Msa1037700-mRNA-1
chr7_1 CDS 74422838 74422907 74422838 ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1 CDS 74421338 74421465 74421338 ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1 CDS 74421013 74421117 74421013 ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1 CDS 74420047 74420190 74420047 ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1 three_prime_UTR 74419682 74420046 74419682 ID=Msa1037700-mRNA-1:three_prime_utr;Parent=Msa1037700-mRNA-1
Gene Sequence

>Msa1037700

ATGGCCTCCAAGCGGATCCTCAAGGAACTCAAGGACCTTCAGAAAGATCCTCCAACCTCTTGCAGCGCTGGCCCTGTAGCAGAAGACATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCCGATAGTCCTTATGCCGGAGGAGTTTTTCTAGTTACCATTCATTTTCCTCCTGATTATCCATTCAAGCCACCCAAGGTTGCATTTAGGACCAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGCATTTGTCTTGATATCTTGAAGGAGCAGTGGAGCCCCGCTTTGACAATATCTAAGGTGCTGTTATCCATTTGTTCCCTGTTGACGGATCCAAACCCAGATGATCCCTTAGTGCCTGAAATAGCTCATATGTACAAGACAGACAGGTCCAAGTATGAAACCACTGCTCGGAGCTGGACTCAGAAGTATGCAATGGGCTAG
Protein sequence

>Msa1037700

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*