AlfalfaGEDB | Msa1037700

M. sativa cultivar zhongmu-4 / Msa1037700

KEGG: K06689
GO: -
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037700	KAF3959386.1	100.000	148	0	0	1	148	59	206	1.40e-106	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037700	sp\|P35135\|UBC4_SOLLC	97.973	148	3	0	1	148	1	148	8.32e-107	303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037700	A0A803R2D7	100.000	148	0	0	1	148	13	160	1.95e-106	309

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1037700	0.928909	1.480720e-92	-8.615850e-47
Msa0000550	Msa1037700	0.854732	1.012001e-61	-8.615850e-47
Msa0001790	Msa1037700	-0.847005	1.520559e-59	-8.615850e-47
Msa0001950	Msa1037700	-0.812137	4.932284e-51	-8.615850e-47
Msa0004860	Msa1037700	-0.800344	1.506449e-48	-8.615850e-47
Msa0004920	Msa1037700	-0.829294	5.580492e-55	-8.615850e-47
Msa0005350	Msa1037700	-0.828579	8.313581e-55	-8.615850e-47
Msa0006700	Msa1037700	-0.807162	5.782765e-50	-8.615850e-47
Msa0007080	Msa1037700	-0.828512	8.627651e-55	-8.615850e-47
Msa0008850	Msa1037700	-0.811115	8.227142e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037700	MtrunA17_Chr7g0275361	100.000	148	0	0	1	148	1	148	8.29e-110	308
Msa1037700	MtrunA17_Chr3g0108261	97.297	148	4	0	1	148	1	148	2.12e-107	302
Msa1037700	MtrunA17_Chr5g0432831	96.622	148	5	0	1	148	1	148	9.63e-107	300
Msa1037700	MtrunA17_Chr1g0154011	92.568	148	11	0	1	148	1	148	4.04e-103	291
Msa1037700	MtrunA17_Chr4g0037011	92.568	148	11	0	1	148	1	148	7.71e-103	290
Msa1037700	MtrunA17_Chr8g0369311	92.568	148	11	0	1	148	57	204	5.53e-102	290
Msa1037700	MtrunA17_Chr8g0378601	51.724	145	70	0	2	146	23	167	3.45e-56	173
Msa1037700	MtrunA17_Chr2g0316201	48.966	145	74	0	4	148	8	152	1.66e-47	150
Msa1037700	MtrunA17_Chr2g0316211	48.611	144	74	0	5	148	9	152	2.04e-46	148
Msa1037700	MtrunA17_Chr8g0362321	45.890	146	74	1	2	142	5	150	1.41e-45	145

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037700	AT1G64230.2	96.622	148	5	1	148	1	148	2.80e-107	302
Msa1037700	AT1G64230.1	96.622	148	5	1	148	1	148	2.80e-107	302
Msa1037700	AT5G53300.2	96.622	148	5	1	148	1	148	8.11e-107	301
Msa1037700	AT5G53300.4	96.622	148	5	1	148	1	148	8.11e-107	301
Msa1037700	AT5G53300.1	96.622	148	5	1	148	1	148	8.11e-107	301
Msa1037700	AT4G27960.1	95.946	148	6	1	148	1	148	2.13e-106	300
Msa1037700	AT5G41700.5	95.946	148	6	1	148	1	148	2.96e-106	299
Msa1037700	AT5G41700.2	95.946	148	6	1	148	1	148	2.96e-106	299
Msa1037700	AT5G41700.1	95.946	148	6	1	148	1	148	2.96e-106	299
Msa1037700	AT4G27960.2	95.946	148	6	1	148	31	178	6.20e-106	300

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Find 82 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCAGCGCTGCAAG+AGG	0.599526	7_1:+74422830	None:intergenic
AAACTGTCAAAATACCCTAC+CGG	0.582333	7_1:-74419977	Msa1037700:three_prime_UTR
AAAGGGAAATTCCAATTCCA+TGG	0.525940	7_1:-74422904	Msa1037700:exon
AAAGTTGAAGAGAGAGGGAA+AGG	0.496771	7_1:+74422952	None:intergenic
AAATACCCTACCGGAGCTTC+CGG	0.406576	7_1:-74419968	Msa1037700:three_prime_UTR
AACCTTAGATATTGTCAAAG+CGG	0.632820	7_1:+74421010	None:intergenic
AATACCTTGGGTGGCTTGAA+TGG	0.396161	7_1:+74421333	None:intergenic
ACAAAGTCCAATACCTTGGG+TGG	0.615790	7_1:+74421324	None:intergenic
ACATCATGACACTTGACAAA+TGG	0.455050	7_1:+74419879	None:intergenic
ACCTTAGATATTGTCAAAGC+GGG	0.466865	7_1:+74421011	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTCAATTAGTGGTAG+TGG	+	chr7_1:74419688-74419707	None:intergenic	30.0%
GGAAAGAAAAACTCAATTAG+TGG	+	chr7_1:74419694-74419713	None:intergenic	30.0%
CAACCAACAAGAAAAGAAAA+GGG	+	chr7_1:74419715-74419734	None:intergenic	30.0%
TCAACCAACAAGAAAAGAAA+AGG	+	chr7_1:74419716-74419735	None:intergenic	30.0%
GTAAAAAAGTTGAAGAGAGA+GGG	+	chr7_1:74419756-74419775	None:intergenic	30.0%
AGTAAAAAAGTTGAAGAGAG+AGG	+	chr7_1:74419757-74419776	None:intergenic	30.0%
TTTAGATCGAAAACTTCGAA+AGG	-	chr7_1:74419778-74419797	Msa1037700:three_prime_UTR	30.0%
TTAGATCGAAAACTTCGAAA+GGG	-	chr7_1:74419779-74419798	Msa1037700:three_prime_UTR	30.0%
TAACAAACCCATGATACAAA+TGG	+	chr7_1:74419991-74420010	None:intergenic	30.0%
CACCTATATATGATTGTATG+AGG	-	chr7_1:74420397-74420416	Msa1037700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74419682	74423040	74419682	ID=Msa1037700;Name=Msa1037700
chr7_1	mRNA	74419682	74423040	74419682	ID=Msa1037700-mRNA-1;Parent=Msa1037700;Name=Msa1037700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=133\|1\|1\|1\|1\|1\|4\|365\|148
chr7_1	exon	74419682	74420190	74419682	ID=Msa1037700-mRNA-1:exon:18754;Parent=Msa1037700-mRNA-1
chr7_1	exon	74421013	74421117	74421013	ID=Msa1037700-mRNA-1:exon:18753;Parent=Msa1037700-mRNA-1
chr7_1	exon	74421338	74421465	74421338	ID=Msa1037700-mRNA-1:exon:18752;Parent=Msa1037700-mRNA-1
chr7_1	exon	74422838	74423040	74422838	ID=Msa1037700-mRNA-1:exon:18751;Parent=Msa1037700-mRNA-1
chr7_1	five_prime_UTR	74422908	74423040	74422908	ID=Msa1037700-mRNA-1:five_prime_utr;Parent=Msa1037700-mRNA-1
chr7_1	CDS	74422838	74422907	74422838	ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1	CDS	74421338	74421465	74421338	ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1	CDS	74421013	74421117	74421013	ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1	CDS	74420047	74420190	74420047	ID=Msa1037700-mRNA-1:cds;Parent=Msa1037700-mRNA-1
chr7_1	three_prime_UTR	74419682	74420046	74419682	ID=Msa1037700-mRNA-1:three_prime_utr;Parent=Msa1037700-mRNA-1

Gene Sequence

>Msa1037700

ATGGCCTCCAAGCGGATCCTCAAGGAACTCAAGGACCTTCAGAAAGATCCTCCAACCTCTTGCAGCGCTGGCCCTGTAGCAGAAGACATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCCGATAGTCCTTATGCCGGAGGAGTTTTTCTAGTTACCATTCATTTTCCTCCTGATTATCCATTCAAGCCACCCAAGGTTGCATTTAGGACCAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGCATTTGTCTTGATATCTTGAAGGAGCAGTGGAGCCCCGCTTTGACAATATCTAAGGTGCTGTTATCCATTTGTTCCCTGTTGACGGATCCAAACCCAGATGATCCCTTAGTGCCTGAAATAGCTCATATGTACAAGACAGACAGGTCCAAGTATGAAACCACTGCTCGGAGCTGGACTCAGAAGTATGCAATGGGCTAG

Protein sequence

>Msa1037700

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*