AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012010 MtrunA17_Chr1g0179621 76.378 127 22 1 13 139 247 365 5.92e-45 154
Msa0012010 MtrunA17_Chr7g0265481 57.037 135 49 2 6 139 236 362 2.96e-31 117
Msa0012010 MtrunA17_Chr5g0402211 81.818 44 8 0 137 180 412 455 4.46e-17 78.2
Msa0012010 MtrunA17_Chr8g0375081 66.667 48 16 0 137 184 417 464 2.34e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012010 AT2G36630.1 52.756 127 52 1 13 139 241 359 2.05e-25 102

Find 64 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAAGCTTTCCAATCTAAT+TGG 0.249520 1_1:+18100942 None:intergenic
TCAACTGTGTGCACAATTAT+AGG 0.259571 1_1:+18101003 None:intergenic
TTTGGAGGCTTACTTGGTTC+TGG 0.271593 1_1:-18102754 Msa0012010:CDS
TTGGGTGTTCTTCGGCTTGC+AGG 0.281027 1_1:-18103124 Msa0012010:intron
TCTACATATTGGTAATAATT+AGG 0.298164 1_1:+18102704 None:intergenic
CCTTGATGATTTGAATTAAG+AGG 0.306448 1_1:+18103264 None:intergenic
TTACGAGTTACTATTGTTCA+TGG 0.315591 1_1:-18101516 Msa0012010:CDS
TAAAGCAACCATGAATTTGT+AGG 0.325331 1_1:+18101348 None:intergenic
AGTTAGAATGGCAGCTTTGA+TGG 0.327425 1_1:-18101490 Msa0012010:CDS
GGCTTACTTGGTTCTGGAGG+TGG 0.346407 1_1:-18102748 Msa0012010:CDS
TGATGCCTTTGATGTTGAAT+TGG 0.359998 1_1:-18101253 Msa0012010:three_prime_UTR
CGAATGTGGTATTCTAAACT+TGG 0.364121 1_1:+18101310 None:intergenic
TGTGGATTGAGTGGTATTGT+AGG 0.389106 1_1:-18102784 Msa0012010:CDS
CAAGTTTAGAATACCACATT+CGG 0.394902 1_1:-18101309 Msa0012010:three_prime_UTR
CTGTGAAACCTACAAATTCA+TGG 0.395582 1_1:-18101356 Msa0012010:three_prime_UTR
TGTTGGTCTTGGACCCTTTG+AGG 0.406303 1_1:-18101442 Msa0012010:CDS
GCAGGTTTCTTATCAAGATA+AGG 0.411591 1_1:-18102073 Msa0012010:intron
GTATGGTATTGGGTGTTCTT+CGG 0.414053 1_1:-18103132 Msa0012010:CDS
CAGGTTTCTTATCAAGATAA+GGG 0.416655 1_1:-18102072 Msa0012010:CDS
CAAAAGCATCAACTGAGAAA+AGG 0.424023 1_1:+18103304 None:intergenic
GGTTGCGAAACCAATTAGAT+TGG 0.428571 1_1:-18100952 Msa0012010:three_prime_UTR
CACAAAATGAGGATGGGCAC+AGG 0.447354 1_1:-18102865 Msa0012010:CDS
ATACATATGTGAGGCATCAA+TGG 0.451588 1_1:-18102833 Msa0012010:CDS
GCATATCTAGGTGTTGGTCT+TGG 0.455048 1_1:-18101453 Msa0012010:CDS
AAAAGCATCAACTGAGAAAA+GGG 0.456835 1_1:+18103305 None:intergenic
CCTCTTAATTCAAATCATCA+AGG 0.458016 1_1:-18103264 Msa0012010:intron
AGGACTGCAGTGTATGGTAT+TGG 0.459813 1_1:-18103143 Msa0012010:CDS
GATGCCTTTGATGTTGAATT+GGG 0.465301 1_1:-18101252 Msa0012010:three_prime_UTR
TCCACCTACAAGGCATATCT+AGG 0.471646 1_1:-18101465 Msa0012010:CDS
CACCAGATTCATATTTATGC+AGG 0.472022 1_1:+18100974 None:intergenic
TGCCTGCATAAATATGAATC+TGG 0.475358 1_1:-18100976 Msa0012010:three_prime_UTR
TAGTTCTTAGCTACCTCAAA+GGG 0.489901 1_1:+18101429 None:intergenic
TTTGATGGCTTCCACCTACA+AGG 0.496451 1_1:-18101475 Msa0012010:CDS
AACACCTAGATATGCCTTGT+AGG 0.502656 1_1:+18101461 None:intergenic
CCACATTCGGGAAGAGTTGG+AGG 0.506092 1_1:-18101296 Msa0012010:three_prime_UTR
TGTTCATGGAATAGTTAGAA+TGG 0.508282 1_1:-18101502 Msa0012010:CDS
GGACTGCAGTGTATGGTATT+GGG 0.513027 1_1:-18103142 Msa0012010:CDS
TCCTGCTTTCAGCTACGAGA+GGG 0.539243 1_1:-18101547 Msa0012010:intron
TTAGTTCTTAGCTACCTCAA+AGG 0.542585 1_1:+18101428 None:intergenic
GGAGGCTTACTTGGTTCTGG+AGG 0.543501 1_1:-18102751 Msa0012010:CDS
CAAGGATCACAAAATGAGGA+TGG 0.545211 1_1:-18102872 Msa0012010:CDS
ATACCACATTCGGGAAGAGT+TGG 0.551523 1_1:-18101299 Msa0012010:three_prime_UTR
TGCACAAGGATCACAAAATG+AGG 0.557129 1_1:-18102876 Msa0012010:CDS
CAACATTGAGAGTGCAACCT+TGG 0.559014 1_1:-18102042 Msa0012010:CDS
TTAACCCAATTCAACATCAA+AGG 0.561095 1_1:+18101248 None:intergenic
AAGTTTAGAATACCACATTC+GGG 0.568629 1_1:-18101308 Msa0012010:three_prime_UTR
GAAAGCATGAATTATATCAC+AGG 0.570939 1_1:+18101081 None:intergenic
TATGTGAGGCATCAATGGAA+TGG 0.573024 1_1:-18102828 Msa0012010:CDS
ATTCGGGAAGAGTTGGAGGA+AGG 0.574194 1_1:-18101292 Msa0012010:three_prime_UTR
TTCCTGCTTTCAGCTACGAG+AGG 0.576710 1_1:-18101548 Msa0012010:intron
ATGTAGAGGACTGCAGTGTA+TGG 0.579413 1_1:-18103149 Msa0012010:CDS
CCTCCAACTCTTCCCGAATG+TGG 0.580153 1_1:+18101296 None:intergenic
TTGGTAATAATTAGGAGAAG+AGG 0.581697 1_1:+18102712 None:intergenic
TACAAGGCATATCTAGGTGT+TGG 0.583608 1_1:-18101459 Msa0012010:CDS
GGATTGAGTGGTATTGTAGG+TGG 0.589364 1_1:-18102781 Msa0012010:CDS
ACCTAGATATGCCTTGTAGG+TGG 0.599115 1_1:+18101464 None:intergenic
GATTATGAACAATAAAGTGA+AGG 0.615575 1_1:-18101391 Msa0012010:three_prime_UTR
ACAAAATGAGGATGGGCACA+GGG 0.615703 1_1:-18102864 Msa0012010:CDS
TGAAGGATTCAAGTTGCACA+AGG 0.622882 1_1:-18102890 Msa0012010:CDS
AAGGATCACAAAATGAGGAT+GGG 0.625681 1_1:-18102871 Msa0012010:CDS
TGGTTTGCAGACTGATGTAG+AGG 0.630937 1_1:-18103163 Msa0012010:intron
GAGCCTAAAATACATATGTG+AGG 0.661800 1_1:-18102842 Msa0012010:CDS
CTCTCTGTCAAACATCACCA+AGG 0.681370 1_1:+18102025 None:intergenic
CTGCATAAATATGAATCTGG+TGG 0.709679 1_1:-18100973 Msa0012010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTAATTTCCAAAT+CGG - chr1_1:18102573-18102592 Msa0012010:intron 10.0%
!!! CATTTATAGAGTTTTAAAAA+AGG + chr1_1:18101210-18101229 None:intergenic 15.0%
!! TAGAAAAAAATTATTTGGAT+TGG - chr1_1:18102350-18102369 Msa0012010:intron 15.0%
!!! CAAGTCTTATATTTTTATAT+TGG - chr1_1:18103302-18103321 Msa0012010:CDS 15.0%
!! TAAAATAAGCAGTTTATTGT+TGG - chr1_1:18101019-18101038 Msa0012010:three_prime_UTR 20.0%
!!! TCTACATATTGGTAATAATT+AGG + chr1_1:18101501-18101520 None:intergenic 20.0%
!! AATTATTACCAATATGTAGA+TGG - chr1_1:18101501-18101520 Msa0012010:CDS 20.0%
!!! TATAGTGTTTTTTTTATGCT+AGG - chr1_1:18101658-18101677 Msa0012010:intron 20.0%
!!! AATCATGATTTTTCTTAGTT+TGG + chr1_1:18102033-18102052 None:intergenic 20.0%
!!! CTAAGAAAAATCATGATTTT+AGG - chr1_1:18102035-18102054 Msa0012010:intron 20.0%
!!! AATTTTTCAGAAGTAATAGA+TGG + chr1_1:18102327-18102346 None:intergenic 20.0%
!!! TCAACTTTTTCAAAATACAA+AGG + chr1_1:18102983-18103002 None:intergenic 20.0%
! AAAACTCTATAAATGCAATG+TGG - chr1_1:18101215-18101234 Msa0012010:three_prime_UTR 25.0%
! TTGGAAACTGAAACAAAAAA+TGG + chr1_1:18101270-18101289 None:intergenic 25.0%
! TTCAATAAAAATTTCTCCAC+AGG + chr1_1:18101749-18101768 None:intergenic 25.0%
!! ACAATCAACTAGCTTATATT+TGG - chr1_1:18101874-18101893 Msa0012010:intron 25.0%
!!! GAATTTTGAACTCTGAAAAT+TGG - chr1_1:18101901-18101920 Msa0012010:intron 25.0%
!! CTTTTTATAATCCATTTTGC+AGG - chr1_1:18102111-18102130 Msa0012010:intron 25.0%
! TATGATTCAACAACACAATA+GGG - chr1_1:18102232-18102251 Msa0012010:intron 25.0%
!! AAATTTTGTAACATCCTCAA+TGG + chr1_1:18102535-18102554 None:intergenic 25.0%
! AATTTCCAAATCGGTTAATT+TGG - chr1_1:18102582-18102601 Msa0012010:intron 25.0%
! TATAACCAAATTAACCGATT+TGG + chr1_1:18102590-18102609 None:intergenic 25.0%
! GATTATGAACAATAAAGTGA+AGG - chr1_1:18102811-18102830 Msa0012010:CDS 25.0%
!! AAAAGCATCAACTGAGAAAA+GGG + chr1_1:18100900-18100919 None:intergenic 30.0%
! CCTTGATGATTTGAATTAAG+AGG + chr1_1:18100941-18100960 None:intergenic 30.0%
CCTCTTAATTCAAATCATCA+AGG - chr1_1:18100938-18100957 Msa0012010:three_prime_UTR 30.0%
ACTGCGATTCATAATATGTT+TGG + chr1_1:18101125-18101144 None:intergenic 30.0%
CATATTATGAATCGCAGTAA+TGG - chr1_1:18101127-18101146 Msa0012010:three_prime_UTR 30.0%
ACAAAAAATGGACATGTGTA+TGG + chr1_1:18101258-18101277 None:intergenic 30.0%
! TCAGTTTCCAATTGCATTTT+TGG - chr1_1:18101279-18101298 Msa0012010:three_prime_UTR 30.0%
! ATGCCTCACATATGTATTTT+AGG + chr1_1:18101366-18101385 None:intergenic 30.0%
! TTGGTAATAATTAGGAGAAG+AGG + chr1_1:18101493-18101512 None:intergenic 30.0%
!! ATGTCACTAAAGTGTTTTCA+AGG - chr1_1:18102000-18102019 Msa0012010:intron 30.0%
CCTCAACAATATAATCATGT+TGG + chr1_1:18102084-18102103 None:intergenic 30.0%
CCAACATGATTATATTGTTG+AGG - chr1_1:18102081-18102100 Msa0012010:intron 30.0%
TTGATAAGAAACCTGCAAAA+TGG + chr1_1:18102125-18102144 None:intergenic 30.0%
CAGGTTTCTTATCAAGATAA+GGG - chr1_1:18102130-18102149 Msa0012010:intron 30.0%
CTATGATTCAACAACACAAT+AGG - chr1_1:18102231-18102250 Msa0012010:intron 30.0%
!! CTGGTTCTAATCAAATTTGA+AGG + chr1_1:18102271-18102290 None:intergenic 30.0%
! AATATGAAATGGGACTTTTC+TGG + chr1_1:18102290-18102309 None:intergenic 30.0%
!! AAATTTTGGTATCTTGGTCA+GGG - chr1_1:18102385-18102404 Msa0012010:intron 30.0%
TTGCACAAACTTTCAACTTA+GGG + chr1_1:18102430-18102449 None:intergenic 30.0%
TTTGCACAAACTTTCAACTT+AGG + chr1_1:18102431-18102450 None:intergenic 30.0%
TTACGAGTTACTATTGTTCA+TGG - chr1_1:18102686-18102705 Msa0012010:intron 30.0%
TGTTCATGGAATAGTTAGAA+TGG - chr1_1:18102700-18102719 Msa0012010:intron 30.0%
TAAAGCAACCATGAATTTGT+AGG + chr1_1:18102857-18102876 None:intergenic 30.0%
! CAAGTTTAGAATACCACATT+CGG - chr1_1:18102893-18102912 Msa0012010:CDS 30.0%
! AAGTTTAGAATACCACATTC+GGG - chr1_1:18102894-18102913 Msa0012010:CDS 30.0%
TTAACCCAATTCAACATCAA+AGG + chr1_1:18102957-18102976 None:intergenic 30.0%
! GAAAGCATGAATTATATCAC+AGG + chr1_1:18103124-18103143 None:intergenic 30.0%
AGTAAGCTTTCCAATCTAAT+TGG + chr1_1:18103263-18103282 None:intergenic 30.0%
!! CAAAAGCATCAACTGAGAAA+AGG + chr1_1:18100901-18100920 None:intergenic 35.0%
!! AGTTGATGCTTTTGTCTGTT+TGG - chr1_1:18100907-18100926 Msa0012010:three_prime_UTR 35.0%
AGAACTCTTAGTGAGTGAAA+GGG + chr1_1:18100971-18100990 None:intergenic 35.0%
TAGAACTCTTAGTGAGTGAA+AGG + chr1_1:18100972-18100991 None:intergenic 35.0%
ATCAAGAATCATGATGAGAC+TGG + chr1_1:18101163-18101182 None:intergenic 35.0%
CTTGATATTGCAAAGAATCG+CGG - chr1_1:18101177-18101196 Msa0012010:three_prime_UTR 35.0%
CCAAACACCAAAAATGCAAT+TGG + chr1_1:18101289-18101308 None:intergenic 35.0%
!!! CCAATTGCATTTTTGGTGTT+TGG - chr1_1:18101286-18101305 Msa0012010:three_prime_UTR 35.0%
!!! TTTTTGGTGTTTGGCTTTGA+AGG - chr1_1:18101295-18101314 Msa0012010:three_prime_UTR 35.0%
AAGGATCACAAAATGAGGAT+GGG - chr1_1:18101331-18101350 Msa0012010:three_prime_UTR 35.0%
GAGCCTAAAATACATATGTG+AGG - chr1_1:18101360-18101379 Msa0012010:three_prime_UTR 35.0%
! ATACATATGTGAGGCATCAA+TGG - chr1_1:18101369-18101388 Msa0012010:three_prime_UTR 35.0%
! GGTATTGTAGGTGGAATTTT+TGG - chr1_1:18101430-18101449 Msa0012010:CDS 35.0%
!! ATTGTAGGTGGAATTTTTGG+AGG - chr1_1:18101433-18101452 Msa0012010:CDS 35.0%
GCAGGTTTCTTATCAAGATA+AGG - chr1_1:18102129-18102148 Msa0012010:intron 35.0%
CCTGAAAGGGAATATGAAAT+GGG + chr1_1:18102300-18102319 None:intergenic 35.0%
TCCTGAAAGGGAATATGAAA+TGG + chr1_1:18102301-18102320 None:intergenic 35.0%
AATAGATGGAGTTCCTGAAA+GGG + chr1_1:18102313-18102332 None:intergenic 35.0%
TAATAGATGGAGTTCCTGAA+AGG + chr1_1:18102314-18102333 None:intergenic 35.0%
!! GGTACTTTGCTGTCAAATTT+TGG - chr1_1:18102371-18102390 Msa0012010:intron 35.0%
!! GCTGTCAAATTTTGGTATCT+TGG - chr1_1:18102379-18102398 Msa0012010:intron 35.0%
!! CAAATTTTGGTATCTTGGTC+AGG - chr1_1:18102384-18102403 Msa0012010:intron 35.0%
TCAATGGCATCAAACACAAA+AGG + chr1_1:18102519-18102538 None:intergenic 35.0%
! TTTTGTGTTTGATGCCATTG+AGG - chr1_1:18102518-18102537 Msa0012010:intron 35.0%
TAGTTCTTAGCTACCTCAAA+GGG + chr1_1:18102776-18102795 None:intergenic 35.0%
! TTAGTTCTTAGCTACCTCAA+AGG + chr1_1:18102777-18102796 None:intergenic 35.0%
CTGTGAAACCTACAAATTCA+TGG - chr1_1:18102846-18102865 Msa0012010:CDS 35.0%
CGAATGTGGTATTCTAAACT+TGG + chr1_1:18102895-18102914 None:intergenic 35.0%
TGATGCCTTTGATGTTGAAT+TGG - chr1_1:18102949-18102968 Msa0012010:intron 35.0%
GATGCCTTTGATGTTGAATT+GGG - chr1_1:18102950-18102969 Msa0012010:intron 35.0%
TCAACTGTGTGCACAATTAT+AGG + chr1_1:18103202-18103221 None:intergenic 35.0%
TGCCTGCATAAATATGAATC+TGG - chr1_1:18103226-18103245 Msa0012010:intron 35.0%
CACCAGATTCATATTTATGC+AGG + chr1_1:18103231-18103250 None:intergenic 35.0%
CTGCATAAATATGAATCTGG+TGG - chr1_1:18103229-18103248 Msa0012010:intron 35.0%
! GTATGGTATTGGGTGTTCTT+CGG - chr1_1:18101070-18101089 Msa0012010:three_prime_UTR 40.0%
!! TGAAGGATTCAAGTTGCACA+AGG - chr1_1:18101312-18101331 Msa0012010:three_prime_UTR 40.0%
TGCACAAGGATCACAAAATG+AGG - chr1_1:18101326-18101345 Msa0012010:three_prime_UTR 40.0%
CAAGGATCACAAAATGAGGA+TGG - chr1_1:18101330-18101349 Msa0012010:three_prime_UTR 40.0%
! TATGTGAGGCATCAATGGAA+TGG - chr1_1:18101374-18101393 Msa0012010:three_prime_UTR 40.0%
! GCTACATCACTTGCATTTTG+TGG - chr1_1:18101400-18101419 Msa0012010:three_prime_UTR 40.0%
!! CTTGCATTTTGTGGATTGAG+TGG - chr1_1:18101409-18101428 Msa0012010:exon 40.0%
! TGTGGATTGAGTGGTATTGT+AGG - chr1_1:18101418-18101437 Msa0012010:exon 40.0%
!! GGAATTTTTGGAGGCTTACT+TGG - chr1_1:18101442-18101461 Msa0012010:CDS 40.0%
GGTGCATACCATCTACATAT+TGG + chr1_1:18101512-18101531 None:intergenic 40.0%
TGTGGGATTGAAAACCAAGA+GGG + chr1_1:18101533-18101552 None:intergenic 40.0%
ATGTGGGATTGAAAACCAAG+AGG + chr1_1:18101534-18101553 None:intergenic 40.0%
TTCAATCCCACATGTGTTGA+TGG - chr1_1:18101541-18101560 Msa0012010:intron 40.0%
AACTGAGTTATGCTCTCAAG+GGG + chr1_1:18101710-18101729 None:intergenic 40.0%
CAACTGAGTTATGCTCTCAA+GGG + chr1_1:18101711-18101730 None:intergenic 40.0%
TCAACTGAGTTATGCTCTCA+AGG + chr1_1:18101712-18101731 None:intergenic 40.0%
CAGAATTACATCTGAGAGTC+TGG + chr1_1:18101963-18101982 None:intergenic 40.0%
!! AGCGCATGTTTTCTGGAAAA+GGG + chr1_1:18102210-18102229 None:intergenic 40.0%
!! TAGCGCATGTTTTCTGGAAA+AGG + chr1_1:18102211-18102230 None:intergenic 40.0%
! TCATAGTAGCGCATGTTTTC+TGG + chr1_1:18102217-18102236 None:intergenic 40.0%
CCCATTTCATATTCCCTTTC+AGG - chr1_1:18102297-18102316 Msa0012010:intron 40.0%
CACAAAAGGCAATAGATGAG+TGG + chr1_1:18102505-18102524 None:intergenic 40.0%
! AGTTAGAATGGCAGCTTTGA+TGG - chr1_1:18102712-18102731 Msa0012010:CDS 40.0%
AACACCTAGATATGCCTTGT+AGG + chr1_1:18102744-18102763 None:intergenic 40.0%
TACAAGGCATATCTAGGTGT+TGG - chr1_1:18102743-18102762 Msa0012010:CDS 40.0%
GGTTGCGAAACCAATTAGAT+TGG - chr1_1:18103250-18103269 Msa0012010:intron 40.0%
! TGGTTTGCAGACTGATGTAG+AGG - chr1_1:18101039-18101058 Msa0012010:three_prime_UTR 45.0%
ATGTAGAGGACTGCAGTGTA+TGG - chr1_1:18101053-18101072 Msa0012010:three_prime_UTR 45.0%
AGGACTGCAGTGTATGGTAT+TGG - chr1_1:18101059-18101078 Msa0012010:three_prime_UTR 45.0%
GGACTGCAGTGTATGGTATT+GGG - chr1_1:18101060-18101079 Msa0012010:three_prime_UTR 45.0%
ATGAATCGCAGTAATGGTCG+CGG - chr1_1:18101133-18101152 Msa0012010:three_prime_UTR 45.0%
ACAAAATGAGGATGGGCACA+GGG - chr1_1:18101338-18101357 Msa0012010:three_prime_UTR 45.0%
GGATTGAGTGGTATTGTAGG+TGG - chr1_1:18101421-18101440 Msa0012010:exon 45.0%
TTTGGAGGCTTACTTGGTTC+TGG - chr1_1:18101448-18101467 Msa0012010:CDS 45.0%
GCAACACCATCAACACATGT+GGG + chr1_1:18101550-18101569 None:intergenic 45.0%
AGCAACACCATCAACACATG+TGG + chr1_1:18101551-18101570 None:intergenic 45.0%
ACTGAGTTATGCTCTCAAGG+GGG + chr1_1:18101709-18101728 None:intergenic 45.0%
ACTCAGAGAAGAACCTTGCA+GGG - chr1_1:18101770-18101789 Msa0012010:intron 45.0%
! CAACATTGAGAGTGCAACCT+TGG - chr1_1:18102160-18102179 Msa0012010:intron 45.0%
CTCTCTGTCAAACATCACCA+AGG + chr1_1:18102180-18102199 None:intergenic 45.0%
!! CTTGGTGATGTTTGACAGAG+AGG - chr1_1:18102178-18102197 Msa0012010:intron 45.0%
! TTTGATGGCTTCCACCTACA+AGG - chr1_1:18102727-18102746 Msa0012010:CDS 45.0%
TCCACCTACAAGGCATATCT+AGG - chr1_1:18102737-18102756 Msa0012010:CDS 45.0%
ACCTAGATATGCCTTGTAGG+TGG + chr1_1:18102741-18102760 None:intergenic 45.0%
!! GCATATCTAGGTGTTGGTCT+TGG - chr1_1:18102749-18102768 Msa0012010:CDS 45.0%
ATACCACATTCGGGAAGAGT+TGG - chr1_1:18102903-18102922 Msa0012010:CDS 45.0%
!! TTTAATAGAAAAAAATTATT+TGG - chr1_1:18102345-18102364 Msa0012010:intron 5.0%
CACAAAATGAGGATGGGCAC+AGG - chr1_1:18101337-18101356 Msa0012010:three_prime_UTR 50.0%
GTAGATGGTATGCACCCTCT+TGG - chr1_1:18101516-18101535 Msa0012010:CDS 50.0%
!! GTGTTGATGGTGTTGCTACG+AGG - chr1_1:18101554-18101573 Msa0012010:intron 50.0%
AGTTATGCTCTCAAGGGGGA+AGG + chr1_1:18101705-18101724 None:intergenic 50.0%
GAATGCTCAGTTAGAGCCTG+TGG - chr1_1:18101730-18101749 Msa0012010:intron 50.0%
CACTCAGAGAAGAACCTTGC+AGG - chr1_1:18101769-18101788 Msa0012010:intron 50.0%
GTAGTCGTTAAGACCCTGCA+AGG + chr1_1:18101786-18101805 None:intergenic 50.0%
CGTTTCGCGTCATTCTTCAG+TGG - chr1_1:18102456-18102475 Msa0012010:intron 50.0%
TTCCTGCTTTCAGCTACGAG+AGG - chr1_1:18102654-18102673 Msa0012010:intron 50.0%
TCCTGCTTTCAGCTACGAGA+GGG - chr1_1:18102655-18102674 Msa0012010:intron 50.0%
!! TGTTGGTCTTGGACCCTTTG+AGG - chr1_1:18102760-18102779 Msa0012010:CDS 50.0%
ATTCGGGAAGAGTTGGAGGA+AGG - chr1_1:18102910-18102929 Msa0012010:CDS 50.0%
! TTGGGTGTTCTTCGGCTTGC+AGG - chr1_1:18101078-18101097 Msa0012010:three_prime_UTR 55.0%
!! GGAGGCTTACTTGGTTCTGG+AGG - chr1_1:18101451-18101470 Msa0012010:CDS 55.0%
!! GGCTTACTTGGTTCTGGAGG+TGG - chr1_1:18101454-18101473 Msa0012010:CDS 55.0%
TCCCTCTCGTAGCTGAAAGC+AGG + chr1_1:18102659-18102678 None:intergenic 55.0%
CCTCCAACTCTTCCCGAATG+TGG + chr1_1:18102909-18102928 None:intergenic 55.0%
CCACATTCGGGAAGAGTTGG+AGG - chr1_1:18102906-18102925 Msa0012010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18100873 18103351 18100873 ID=Msa0012010;Name=Msa0012010
chr1_1 mRNA 18100873 18103351 18100873 ID=Msa0012010-mRNA-1;Parent=Msa0012010;Name=Msa0012010-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.4|1|1|1|5|555|184
chr1_1 exon 18100873 18101557 18100873 ID=Msa0012010-mRNA-1:exon:6636;Parent=Msa0012010-mRNA-1
chr1_1 exon 18102038 18102091 18102038 ID=Msa0012010-mRNA-1:exon:6635;Parent=Msa0012010-mRNA-1
chr1_1 exon 18102709 18102941 18102709 ID=Msa0012010-mRNA-1:exon:6634;Parent=Msa0012010-mRNA-1
chr1_1 exon 18103125 18103175 18103125 ID=Msa0012010-mRNA-1:exon:6633;Parent=Msa0012010-mRNA-1
chr1_1 exon 18103265 18103351 18103265 ID=Msa0012010-mRNA-1:exon:6632;Parent=Msa0012010-mRNA-1
chr1_1 CDS 18103265 18103351 18103265 ID=Msa0012010-mRNA-1:cds;Parent=Msa0012010-mRNA-1
chr1_1 CDS 18103125 18103175 18103125 ID=Msa0012010-mRNA-1:cds;Parent=Msa0012010-mRNA-1
chr1_1 CDS 18102709 18102941 18102709 ID=Msa0012010-mRNA-1:cds;Parent=Msa0012010-mRNA-1
chr1_1 CDS 18102038 18102091 18102038 ID=Msa0012010-mRNA-1:cds;Parent=Msa0012010-mRNA-1
chr1_1 CDS 18101428 18101557 18101428 ID=Msa0012010-mRNA-1:cds;Parent=Msa0012010-mRNA-1
chr1_1 three_prime_UTR 18100873 18101427 18100873 ID=Msa0012010-mRNA-1:three_prime_utr;Parent=Msa0012010-mRNA-1
Gene Sequence

>Msa0012010

ATGTTCAATTCAAACTCTAATATTCCCTTTTCTCAGTTGATGCTTTTGTCTGTTTGGCTTTCTTTCCTCTTAATTCAAATCATCAAGACTGATGTAGAGGACTGCAGTGTATGGTATTGGGTGTTCTTCGGCTTGCAGTTTCCAATTGCATTTTTGGTGTTTGGCTTTGAAGGATTCAAGTTGCACAAGGATCACAAAATGAGGATGGGCACAGGGAGCCTAAAATACATATGTGAGGCATCAATGGAATGGAGTGCTACATCACTTGCATTTTGTGGATTGAGTGGTATTGTAGGTGGAATTTTTGGAGGCTTACTTGGTTCTGGAGGTGGATTTATTTTCAGACCTCTTCTCCTAATTATTACCAATATGTTTCTTATCAAGATAAGGGTGATTGACAACATTGAGAGTGCAACCTTGGTGATCTACGAGAGGGAGCGAAGATTACGAGTTACTATTGTTCATGGAATAGTTAGAATGGCAGCTTTGATGGCTTCCACCTACAAGGCATATCTAGGTGTTGGTCTTGGACCCTTTGAGGTAGCTAAGAACTAA
Protein sequence

>Msa0012010

MFNSNSNIPFSQLMLLSVWLSFLLIQIIKTDVEDCSVWYWVFFGLQFPIAFLVFGFEGFKLHKDHKMRMGTGSLKYICEASMEWSATSLAFCGLSGIVGGIFGGLLGSGGGFIFRPLLLIITNMFLIKIRVIDNIESATLVIYERERRLRVTIVHGIVRMAALMASTYKAYLGVGLGPFEVAKN*