Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414020 | RHN76102.1 | 90.476 | 84 | 8 | 0 | 77 | 160 | 266 | 349 | 1.18e-38 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414020 | sp|O65015|AMYB_TRIRP | 64.384 | 73 | 23 | 1 | 207 | 276 | 135 | 207 | 2.76e-21 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414020 | A0A396JFP7 | 90.476 | 84 | 8 | 0 | 77 | 160 | 266 | 349 | 5.66e-39 | 156 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0414020 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012010 | Msa0414020 | 0.809174 | 2.155787e-50 | -8.615850e-47 |
| Msa0047280 | Msa0414020 | 0.837906 | 3.942187e-57 | -8.615850e-47 |
| Msa0052630 | Msa0414020 | 0.818205 | 2.213034e-52 | -8.615850e-47 |
| Msa0053690 | Msa0414020 | 0.853879 | 1.784087e-61 | -8.615850e-47 |
| Msa0053700 | Msa0414020 | 0.903464 | 3.376965e-79 | -8.615850e-47 |
| Msa0065010 | Msa0414020 | 0.806947 | 6.421369e-50 | -8.615850e-47 |
| Msa0067890 | Msa0414020 | 0.807135 | 5.859238e-50 | -8.615850e-47 |
| Msa0070430 | Msa0414020 | 0.808525 | 2.967710e-50 | -8.615850e-47 |
| Msa0077540 | Msa0414020 | 0.811035 | 8.563242e-51 | -8.615850e-47 |
| Msa0111330 | Msa0414020 | 0.807628 | 4.607402e-50 | -8.615850e-47 |
| Msa0126770 | Msa0414020 | 0.806324 | 8.693592e-50 | -8.615850e-47 |
| Msa0139990 | Msa0414020 | 0.846517 | 2.066624e-59 | -8.615850e-47 |
| Msa0164370 | Msa0414020 | 0.922124 | 1.478403e-88 | -8.615850e-47 |
| Msa0174000 | Msa0414020 | 0.802697 | 4.960156e-49 | -8.615850e-47 |
| Msa0185400 | Msa0414020 | 0.818069 | 2.375851e-52 | -8.615850e-47 |
| Msa0193600 | Msa0414020 | 0.820749 | 5.818499e-53 | -8.615850e-47 |
| Msa0194560 | Msa0414020 | 0.812281 | 4.588301e-51 | -8.615850e-47 |
| Msa0199570 | Msa0414020 | 0.818106 | 2.330481e-52 | -8.615850e-47 |
| Msa0364990 | Msa0414020 | 0.925382 | 1.978481e-90 | -8.615850e-47 |
| Msa0379600 | Msa0414020 | 0.802651 | 5.071572e-49 | -8.615850e-47 |
| Msa0387880 | Msa0414020 | -0.814514 | 1.482441e-51 | -8.615850e-47 |
| Msa0414020 | Msa0431770 | 0.882113 | 1.368060e-70 | -8.615850e-47 |
| Msa0414020 | Msa0458640 | 0.813917 | 2.008007e-51 | -8.615850e-47 |
| Msa0414020 | Msa0459700 | 0.815744 | 7.900490e-52 | -8.615850e-47 |
| Msa0414020 | Msa0485890 | 0.813856 | 2.071228e-51 | -8.615850e-47 |
| Msa0414020 | Msa0510290 | 0.808716 | 2.700922e-50 | -8.615850e-47 |
| Msa0414020 | Msa0515640 | 0.812842 | 3.458654e-51 | -8.615850e-47 |
| Msa0414020 | Msa0550540 | 0.800182 | 1.624757e-48 | -8.615850e-47 |
| Msa0414020 | Msa0550570 | 0.810104 | 1.360490e-50 | -8.615850e-47 |
| Msa0414020 | Msa0576730 | 0.835175 | 1.954899e-56 | -8.615850e-47 |
| Msa0414020 | Msa0578090 | 0.810562 | 1.083932e-50 | -8.615850e-47 |
| Msa0414020 | Msa0594710 | 0.821028 | 5.019423e-53 | -8.615850e-47 |
| Msa0414020 | Msa0609220 | 0.800224 | 1.592918e-48 | -8.615850e-47 |
| Msa0414020 | Msa0619920 | 0.805199 | 1.497860e-49 | -8.615850e-47 |
| Msa0414020 | Msa0645170 | 0.811228 | 7.773994e-51 | -8.615850e-47 |
| Msa0414020 | Msa0647430 | 0.809044 | 2.298637e-50 | -8.615850e-47 |
| Msa0414020 | Msa0659990 | 0.806443 | 8.206357e-50 | -8.615850e-47 |
| Msa0414020 | Msa0687230 | 0.811420 | 7.063403e-51 | -8.615850e-47 |
| Msa0414020 | Msa0691690 | 0.807876 | 4.080891e-50 | -8.615850e-47 |
| Msa0414020 | Msa0702150 | 0.831543 | 1.572482e-55 | -8.615850e-47 |
| Msa0414020 | Msa0702270 | 0.834231 | 3.377175e-56 | -8.615850e-47 |
| Msa0414020 | Msa0702580 | 0.827676 | 1.371585e-54 | -8.615850e-47 |
| Msa0414020 | Msa0702670 | 0.819637 | 1.046257e-52 | -8.615850e-47 |
| Msa0414020 | Msa0705390 | 0.800137 | 1.659275e-48 | -8.615850e-47 |
| Msa0414020 | Msa0706390 | 0.800020 | 1.753098e-48 | -8.615850e-47 |
| Msa0414020 | Msa0716410 | 0.800403 | 1.465247e-48 | -8.615850e-47 |
| Msa0414020 | Msa0747170 | 0.823752 | 1.169738e-53 | -8.615850e-47 |
| Msa0414020 | Msa0795660 | 0.809587 | 1.757776e-50 | -8.615850e-47 |
| Msa0414020 | Msa0798090 | 0.845231 | 4.620334e-59 | -8.615850e-47 |
| Msa0414020 | Msa0798100 | 0.802843 | 4.627952e-49 | -8.615850e-47 |
| Msa0414020 | Msa0799480 | 0.886738 | 2.633514e-72 | -8.615850e-47 |
| Msa0414020 | Msa0832050 | 0.800380 | 1.480637e-48 | -8.615850e-47 |
| Msa0414020 | Msa0832820 | 0.805872 | 1.082131e-49 | -8.615850e-47 |
| Msa0414020 | Msa0869010 | 0.807004 | 6.246654e-50 | -8.615850e-47 |
| Msa0414020 | Msa0871780 | 0.809817 | 1.568820e-50 | -8.615850e-47 |
| Msa0414020 | Msa0888940 | 0.821129 | 4.756656e-53 | -8.615850e-47 |
| Msa0414020 | Msa0895310 | 0.818917 | 1.526399e-52 | -8.615850e-47 |
| Msa0414020 | Msa0903780 | 0.810582 | 1.072922e-50 | -8.615850e-47 |
| Msa0414020 | Msa0928120 | 0.818185 | 2.236286e-52 | -8.615850e-47 |
| Msa0414020 | Msa0940830 | 0.813131 | 2.989782e-51 | -8.615850e-47 |
| Msa0414020 | Msa0943170 | 0.816032 | 6.815857e-52 | -8.615850e-47 |
| Msa0414020 | Msa0943270 | 0.811594 | 6.476375e-51 | -8.615850e-47 |
| Msa0414020 | Msa0963020 | 0.802709 | 4.933184e-49 | -8.615850e-47 |
| Msa0414020 | Msa0980940 | 0.817516 | 3.167104e-52 | -8.615850e-47 |
| Msa0414020 | Msa0990830 | 0.841787 | 3.843973e-58 | -8.615850e-47 |
| Msa0414020 | Msa1004420 | 0.827950 | 1.178593e-54 | -8.615850e-47 |
| Msa0414020 | Msa1020100 | 0.832790 | 7.730180e-56 | -8.615850e-47 |
| Msa0414020 | Msa1025940 | 0.808156 | 3.556154e-50 | -8.615850e-47 |
| Msa0414020 | Msa1030930 | 0.812352 | 4.426361e-51 | -8.615850e-47 |
| Msa0414020 | Msa1059310 | 0.843357 | 1.472532e-58 | -8.615850e-47 |
| Msa0414020 | Msa1067070 | 0.896339 | 4.055600e-76 | -8.615850e-47 |
| Msa0414020 | Msa1070390 | 0.815323 | 9.805856e-52 | -8.615850e-47 |
| Msa0414020 | Msa1071530 | 0.835849 | 1.320558e-56 | -8.615850e-47 |
| Msa0414020 | Msa1126850 | 0.808664 | 2.771860e-50 | -8.615850e-47 |
| Msa0414020 | Msa1131170 | 0.800011 | 1.760696e-48 | -8.615850e-47 |
| Msa0414020 | Msa1154490 | 0.821265 | 4.425421e-53 | -8.615850e-47 |
| Msa0414020 | Msa1158230 | 0.801220 | 9.978736e-49 | -8.615850e-47 |
| Msa0414020 | Msa1199290 | 0.818441 | 1.957210e-52 | -8.615850e-47 |
| Msa0414020 | Msa1201810 | 0.806418 | 8.305674e-50 | -8.615850e-47 |
| Msa0414020 | Msa1201830 | 0.806619 | 7.533626e-50 | -8.615850e-47 |
| Msa0414020 | Msa1202580 | 0.813457 | 2.534569e-51 | -8.615850e-47 |
| Msa0414020 | Msa1211830 | 0.810691 | 1.016101e-50 | -8.615850e-47 |
| Msa0414020 | Msa1226100 | 0.815737 | 7.929705e-52 | -8.615850e-47 |
| Msa0414020 | Msa1227690 | 0.803859 | 2.850626e-49 | -8.615850e-47 |
| Msa0414020 | Msa1253400 | 0.899565 | 1.748209e-77 | -8.615850e-47 |
| Msa0414020 | Msa1253810 | 0.865558 | 5.411359e-65 | -8.615850e-47 |
| Msa0414020 | Msa1279590 | 0.899798 | 1.387249e-77 | -8.615850e-47 |
| Msa0414020 | Msa1289300 | 0.915432 | 5.926549e-85 | -8.615850e-47 |
| Msa0414020 | Msa1297600 | 0.917520 | 4.802976e-86 | -8.615850e-47 |
| Msa0414020 | Msa1306390 | 0.801582 | 8.412512e-49 | -8.615850e-47 |
| Msa0414020 | Msa1320580 | 0.835894 | 1.286005e-56 | -8.615850e-47 |
| Msa0414020 | Msa1323800 | 0.804113 | 2.524259e-49 | -8.615850e-47 |
| Msa0414020 | Msa1323990 | 0.858782 | 6.504870e-63 | -8.615850e-47 |
| Msa0414020 | Msa1325930 | 0.818016 | 2.442601e-52 | -8.615850e-47 |
| Msa0414020 | Msa1377800 | 0.801448 | 8.960016e-49 | -8.615850e-47 |
| Msa0414020 | Msa1381650 | 0.803459 | 3.451036e-49 | -8.615850e-47 |
| Msa0414020 | Msa1397940 | 0.813470 | 2.517934e-51 | -8.615850e-47 |
| Msa0414020 | Msa1424780 | 0.805037 | 1.619573e-49 | -8.615850e-47 |
| Msa0414020 | Msa1445940 | 0.800730 | 1.256350e-48 | -8.615850e-47 |
| Msa0414020 | Msa1445960 | 0.823062 | 1.695040e-53 | -8.615850e-47 |
| Msa0414020 | Msa1455280 | 0.840756 | 7.178498e-58 | -8.615850e-47 |
| Msa0251770 | Msa0414020 | 0.800174 | 1.631035e-48 | -8.615850e-47 |
| Msa0273650 | Msa0414020 | 0.819740 | 9.907236e-53 | -8.615850e-47 |
| Msa0287350 | Msa0414020 | 0.809462 | 1.869949e-50 | -8.615850e-47 |
| Msa0313930 | Msa0414020 | 0.805438 | 1.334770e-49 | -8.615850e-47 |
| Msa0319330 | Msa0414020 | 0.823658 | 1.230538e-53 | -8.615850e-47 |
| Msa0322590 | Msa0414020 | 0.805945 | 1.044627e-49 | -8.615850e-47 |
| Msa0337500 | Msa0414020 | 0.839800 | 1.276111e-57 | -8.615850e-47 |
| Msa0337510 | Msa0414020 | 0.938414 | 7.002954e-99 | -8.615850e-47 |
| Msa0358510 | Msa0414020 | 0.802172 | 6.363522e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414020 | MtrunA17_Chr2g0328391 | 90.476 | 84 | 8 | 0 | 77 | 160 | 266 | 349 | 1.09e-42 | 156 |
| Msa0414020 | MtrunA17_Chr2g0323051 | 61.798 | 89 | 32 | 2 | 223 | 311 | 227 | 313 | 1.05e-26 | 110 |
| Msa0414020 | MtrunA17_Chr4g0031711 | 63.889 | 72 | 26 | 0 | 89 | 160 | 340 | 411 | 2.00e-25 | 107 |
| Msa0414020 | MtrunA17_Chr4g0031721 | 54.255 | 94 | 42 | 1 | 67 | 159 | 272 | 365 | 3.34e-23 | 100 |
| Msa0414020 | MtrunA17_Chr4g0031701 | 62.857 | 70 | 26 | 0 | 91 | 160 | 235 | 304 | 1.35e-22 | 98.6 |
| Msa0414020 | MtrunA17_Chr3g0140681 | 75.000 | 60 | 9 | 1 | 170 | 223 | 194 | 253 | 4.58e-22 | 95.9 |
| Msa0414020 | MtrunA17_Chr4g0031731 | 61.429 | 70 | 27 | 0 | 91 | 160 | 235 | 304 | 6.30e-22 | 96.7 |
| Msa0414020 | MtrunA17_Chr7g0238891 | 57.500 | 80 | 34 | 0 | 92 | 171 | 354 | 433 | 8.71e-22 | 96.3 |
| Msa0414020 | MtrunA17_Chr4g0023601 | 60.274 | 73 | 26 | 1 | 207 | 276 | 135 | 207 | 5.33e-21 | 93.6 |
| Msa0414020 | MtrunA17_Chr2g0328381 | 51.899 | 79 | 38 | 0 | 81 | 159 | 246 | 324 | 2.22e-18 | 86.3 |
| Msa0414020 | MtrunA17_Chr2g0328361 | 56.250 | 64 | 28 | 0 | 96 | 159 | 260 | 323 | 1.16e-17 | 84.0 |
| Msa0414020 | MtrunA17_Chr2g0328341 | 45.833 | 96 | 46 | 2 | 70 | 159 | 226 | 321 | 4.15e-17 | 82.4 |
| Msa0414020 | MtrunA17_Chr2g0328401 | 55.556 | 72 | 30 | 1 | 90 | 159 | 268 | 339 | 6.29e-16 | 78.6 |
| Msa0414020 | MtrunA17_Chr4g0031741 | 62.500 | 56 | 21 | 0 | 104 | 159 | 278 | 333 | 3.34e-15 | 76.6 |
| Msa0414020 | MtrunA17_Chr2g0328411 | 50.649 | 77 | 31 | 2 | 90 | 159 | 262 | 338 | 8.42e-14 | 72.4 |
| Msa0414020 | MtrunA17_Chr2g0328431 | 49.351 | 77 | 32 | 1 | 90 | 159 | 262 | 338 | 2.20e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414020 | AT1G07530.1 | 49.462 | 93 | 45 | 1 | 69 | 159 | 353 | 445 | 3.28e-21 | 95.1 |
| Msa0414020 | AT2G32290.1 | 75.926 | 54 | 13 | 0 | 223 | 276 | 219 | 272 | 5.69e-21 | 94.4 |
| Msa0414020 | AT4G15210.3 | 56.164 | 73 | 29 | 1 | 207 | 276 | 84 | 156 | 1.59e-19 | 89.4 |
| Msa0414020 | AT4G15210.4 | 56.164 | 73 | 29 | 1 | 207 | 276 | 84 | 156 | 1.59e-19 | 89.4 |
| Msa0414020 | AT4G15210.2 | 56.164 | 73 | 29 | 1 | 207 | 276 | 137 | 209 | 1.63e-19 | 89.4 |
| Msa0414020 | AT4G15210.1 | 56.164 | 73 | 29 | 1 | 207 | 276 | 137 | 209 | 2.08e-19 | 89.4 |
| Msa0414020 | AT2G29060.2 | 38.843 | 121 | 57 | 2 | 90 | 193 | 264 | 384 | 4.05e-18 | 85.9 |
| Msa0414020 | AT2G29060.1 | 38.843 | 121 | 57 | 2 | 90 | 193 | 301 | 421 | 4.75e-18 | 85.5 |
| Msa0414020 | AT1G07520.2 | 60.294 | 68 | 24 | 1 | 92 | 159 | 139 | 203 | 1.19e-17 | 84.3 |
| Msa0414020 | AT1G07520.4 | 60.294 | 68 | 24 | 1 | 92 | 159 | 139 | 203 | 1.19e-17 | 84.3 |
| Msa0414020 | AT1G07520.1 | 60.294 | 68 | 24 | 1 | 92 | 159 | 303 | 367 | 1.28e-17 | 84.3 |
| Msa0414020 | AT1G07520.3 | 60.294 | 68 | 24 | 1 | 92 | 159 | 304 | 368 | 1.28e-17 | 84.3 |
| Msa0414020 | AT2G37650.1 | 52.703 | 74 | 35 | 0 | 98 | 171 | 335 | 408 | 1.08e-16 | 81.6 |
| Msa0414020 | AT2G37650.2 | 52.703 | 74 | 35 | 0 | 98 | 171 | 323 | 396 | 1.19e-16 | 81.3 |
| Msa0414020 | AT2G29065.1 | 60.714 | 56 | 22 | 0 | 104 | 159 | 246 | 301 | 5.72e-13 | 70.1 |
| Msa0414020 | AT4G00490.1 | 53.704 | 54 | 25 | 0 | 223 | 276 | 236 | 289 | 1.16e-12 | 68.9 |
| Msa0414020 | AT5G59450.1 | 46.575 | 73 | 36 | 1 | 90 | 159 | 204 | 276 | 4.69e-12 | 67.4 |
| Msa0414020 | AT2G45880.1 | 35.484 | 93 | 45 | 1 | 199 | 276 | 350 | 442 | 1.81e-11 | 65.5 |
| Msa0414020 | AT3G23920.1 | 44.737 | 76 | 37 | 3 | 205 | 276 | 226 | 300 | 2.02e-11 | 65.5 |
| Msa0414020 | AT3G46600.3 | 46.377 | 69 | 37 | 0 | 91 | 159 | 161 | 229 | 3.44e-11 | 64.7 |
| Msa0414020 | AT3G46600.1 | 46.377 | 69 | 37 | 0 | 91 | 159 | 193 | 261 | 3.86e-11 | 64.7 |
| Msa0414020 | AT5G45300.3 | 46.296 | 54 | 29 | 0 | 223 | 276 | 410 | 463 | 4.87e-11 | 64.3 |
| Msa0414020 | AT5G45300.2 | 46.296 | 54 | 29 | 0 | 223 | 276 | 394 | 447 | 5.47e-11 | 64.3 |
| Msa0414020 | AT5G45300.1 | 46.296 | 54 | 29 | 0 | 223 | 276 | 396 | 449 | 5.53e-11 | 64.3 |
| Msa0414020 | AT1G10040.2 | 54.717 | 53 | 24 | 0 | 171 | 223 | 216 | 268 | 7.78e-11 | 63.2 |
| Msa0414020 | AT1G10040.1 | 54.717 | 53 | 24 | 0 | 171 | 223 | 216 | 268 | 8.84e-11 | 63.2 |
Find 99 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGTTTATAGATTAATT+AGG | 0.166605 | 3_2:+58964874 | Msa0414020:three_prime_UTR |
| GCAGGGAGAACAAGCTTTAT+TGG | 0.217900 | 3_2:+58960940 | Msa0414020:intron |
| TATGATAATTTAATCAAAAT+TGG | 0.267934 | 3_2:+58964945 | Msa0414020:three_prime_UTR |
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 3_2:+58963591 | Msa0414020:CDS |
| ATATGTTTATAGATTAATTA+GGG | 0.278241 | 3_2:+58964875 | Msa0414020:three_prime_UTR |
| CTTCAAATAGTCAGCCATTC+TGG | 0.282618 | 3_2:-58964726 | None:intergenic |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 3_2:+58962352 | Msa0414020:CDS |
| TACCATTAATACCTCTTCTA+TGG | 0.297338 | 3_2:-58959181 | None:intergenic |
| AAGCTTAATAGCAGCCTTAC+TGG | 0.305599 | 3_2:+58964902 | Msa0414020:three_prime_UTR |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 3_2:+58964134 | Msa0414020:CDS |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 3_2:+58964249 | Msa0414020:CDS |
| GGCCATAGAAGAGGTATTAA+TGG | 0.329008 | 3_2:+58959179 | Msa0414020:CDS |
| GATGGAGGAAGAAGGGAAAT+TGG | 0.330889 | 3_2:+58958563 | None:intergenic |
| AGAAAATTACCTTGTAAGTA+TGG | 0.331370 | 3_2:-58959216 | None:intergenic |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.331779 | 3_2:+58961788 | Msa0414020:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 3_2:+58963557 | Msa0414020:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 3_2:+58963600 | Msa0414020:CDS |
| CTGTGTCTGCTAATGATAAT+AGG | 0.338214 | 3_2:+58961738 | Msa0414020:CDS |
| AATCCTGGACTCACCGCTTA+TGG | 0.358745 | 3_2:-58964615 | None:intergenic |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 3_2:-58962382 | None:intergenic |
| CCGCTTATGGTGACATCATA+AGG | 0.359764 | 3_2:-58964602 | None:intergenic |
| TCCCTCTCATGCATGATATC+TGG | 0.374941 | 3_2:-58964645 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 3_2:+58961700 | Msa0414020:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 3_2:+58963543 | Msa0414020:intron |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 3_2:+58961514 | Msa0414020:intron |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 3_2:+58964243 | Msa0414020:CDS |
| AAATGCAGGGGACAGGCTTC+CGG | 0.414461 | 3_2:+58964566 | Msa0414020:intron |
| AGCTGATAATCTGTGTTTCA+AGG | 0.417769 | 3_2:+58960963 | Msa0414020:CDS |
| AGAAGGGAAATTGGAGAAGA+AGG | 0.422017 | 3_2:+58958572 | Msa0414020:CDS |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 3_2:+58961768 | Msa0414020:CDS |
| AATTTCCCTTCTTCCTCCAT+CGG | 0.440960 | 3_2:-58958561 | None:intergenic |
| ATAGTCAGCCATTCTGGCTC+TGG | 0.443426 | 3_2:-58964720 | None:intergenic |
| ATGGTGAAATCAAGGTTGTA+AGG | 0.447811 | 3_2:+58959133 | Msa0414020:CDS |
| TATATCTATATATATGTTCA+AGG | 0.447915 | 3_2:-58964810 | None:intergenic |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 3_2:+58961690 | Msa0414020:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 3_2:+58961635 | Msa0414020:CDS |
| ATATCTGGCCTCACTAATCC+TGG | 0.482839 | 3_2:-58964630 | None:intergenic |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 3_2:+58963583 | Msa0414020:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 3_2:+58964192 | Msa0414020:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 3_2:+58961672 | Msa0414020:CDS |
| AAGAAGCCGATGGAGGAAGA+AGG | 0.492336 | 3_2:+58958555 | None:intergenic |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 3_2:+58964444 | Msa0414020:CDS |
| TCACCATAAGCGGTGAGTCC+AGG | 0.505916 | 3_2:+58964612 | Msa0414020:CDS |
| CGCTTATGGTGACATCATAA+GGG | 0.505983 | 3_2:-58964601 | None:intergenic |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 3_2:+58963601 | Msa0414020:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 3_2:-58964390 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 3_2:+58961682 | Msa0414020:CDS |
| TTGAGATTCCAGAGCCAGAA+TGG | 0.530384 | 3_2:+58964712 | Msa0414020:three_prime_UTR |
| ACCTCCTCTTCTTCTCCGGA+TGG | 0.530701 | 3_2:+58963659 | Msa0414020:CDS |
| TTGTCAAATATGAACCAGTA+AGG | 0.531051 | 3_2:-58964916 | None:intergenic |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 3_2:-58964207 | None:intergenic |
| ATAAGGGCTGGTGCACCTAC+CGG | 0.534455 | 3_2:-58964585 | None:intergenic |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 3_2:+58961808 | Msa0414020:CDS |
| AAATTGGAAATGCAGGGGAC+AGG | 0.536511 | 3_2:+58964559 | Msa0414020:intron |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 3_2:-58961803 | None:intergenic |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 3_2:-58961715 | None:intergenic |
| CGAACCATCCGGAGAAGAAG+AGG | 0.554499 | 3_2:-58963663 | None:intergenic |
| TATGGTGACATCATAAGGGC+TGG | 0.556208 | 3_2:-58964597 | None:intergenic |
| AATGGCTGACTATTTGAAGC+AGG | 0.562267 | 3_2:+58964730 | Msa0414020:three_prime_UTR |
| ATGTTTATAGATTAATTAGG+GGG | 0.570090 | 3_2:+58964877 | Msa0414020:three_prime_UTR |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 3_2:+58964408 | Msa0414020:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 3_2:-58961714 | None:intergenic |
| CCTTATGATGTCACCATAAG+CGG | 0.579231 | 3_2:+58964602 | Msa0414020:CDS |
| AGAAGCCGATGGAGGAAGAA+GGG | 0.579655 | 3_2:+58958556 | None:intergenic |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 3_2:+58959170 | Msa0414020:CDS |
| GCCAGATATCATGCATGAGA+GGG | 0.594778 | 3_2:+58964644 | Msa0414020:exon |
| GGCCAGATATCATGCATGAG+AGG | 0.594930 | 3_2:+58964643 | Msa0414020:exon |
| AATTGAAGCTAAGAAAGATA+AGG | 0.595945 | 3_2:+58959158 | Msa0414020:CDS |
| CAAAGATCCTTAAAAGCTCG+AGG | 0.597079 | 3_2:+58964688 | Msa0414020:three_prime_UTR |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 3_2:+58964183 | Msa0414020:CDS |
| TGGTGAAATCAAGGTTGTAA+GGG | 0.598356 | 3_2:+58959134 | Msa0414020:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 3_2:+58964173 | Msa0414020:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 3_2:+58961643 | Msa0414020:CDS |
| TACATGCCATGGTGAAATCA+AGG | 0.607874 | 3_2:+58959125 | Msa0414020:CDS |
| ACTAAGCCACCATACTTACA+AGG | 0.607997 | 3_2:+58959207 | Msa0414020:CDS |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 3_2:+58964440 | Msa0414020:CDS |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 3_2:+58961662 | Msa0414020:CDS |
| GAATGAGATTGAAGCGCGCA+TGG | 0.620486 | 3_2:+58961844 | Msa0414020:CDS |
| AAATTACCTTGTAAGTATGG+TGG | 0.624420 | 3_2:-58959213 | None:intergenic |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 3_2:+58959114 | Msa0414020:CDS |
| TATTTGAAGCAGGATGGCAA+AGG | 0.629381 | 3_2:+58964740 | Msa0414020:three_prime_UTR |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 3_2:-58964261 | None:intergenic |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 3_2:-58964206 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 3_2:+58961638 | Msa0414020:CDS |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 3_2:-58964245 | None:intergenic |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 3_2:+58964177 | Msa0414020:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 3_2:+58961639 | Msa0414020:CDS |
| GCTGACTATTTGAAGCAGGA+TGG | 0.643683 | 3_2:+58964734 | Msa0414020:three_prime_UTR |
| ACCATCCGGAGAAGAAGAGG+AGG | 0.646740 | 3_2:-58963660 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 3_2:+58961673 | Msa0414020:CDS |
| TATGTTTATAGATTAATTAG+GGG | 0.649576 | 3_2:+58964876 | Msa0414020:three_prime_UTR |
| GCAGGGGACAGGCTTCCGGT+AGG | 0.665612 | 3_2:+58964570 | Msa0414020:intron |
| TTACAACCTTGATTTCACCA+TGG | 0.667321 | 3_2:-58959131 | None:intergenic |
| CGGTGAGTCCAGGATTAGTG+AGG | 0.671978 | 3_2:+58964622 | Msa0414020:CDS |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 3_2:-58963552 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 3_2:+58961619 | Msa0414020:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 3_2:+58961623 | Msa0414020:CDS |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 3_2:+58961666 | Msa0414020:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 3_2:+58961663 | Msa0414020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTCATAATTATTTTTTA+TGG | - | chr3_2:58959069-58959088 | None:intergenic | 10.0% |
| !!! | TATTATGATTTATAGTTTTT+TGG | + | chr3_2:58959421-58959440 | Msa0414020:intron | 10.0% |
| !! | TATATGTTTATAGATTAATT+AGG | + | chr3_2:58964874-58964893 | Msa0414020:three_prime_UTR | 10.0% |
| !! | ATATGTTTATAGATTAATTA+GGG | + | chr3_2:58964875-58964894 | Msa0414020:three_prime_UTR | 10.0% |
| !!! | TGTATGTTGATTTTTTTATT+TGG | + | chr3_2:58959337-58959356 | Msa0414020:intron | 15.0% |
| !!! | ATATATGTTTAGTTTGATTA+TGG | + | chr3_2:58959378-58959397 | Msa0414020:intron | 15.0% |
| !!! | GATTTTGAAAATACTTTTAT+GGG | + | chr3_2:58959519-58959538 | Msa0414020:intron | 15.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | + | chr3_2:58961112-58961131 | Msa0414020:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | + | chr3_2:58962233-58962252 | Msa0414020:intron | 15.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | - | chr3_2:58962497-58962516 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | + | chr3_2:58962509-58962528 | Msa0414020:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | + | chr3_2:58962703-58962722 | Msa0414020:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | - | chr3_2:58963694-58963713 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | + | chr3_2:58963693-58963712 | Msa0414020:intron | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | - | chr3_2:58964009-58964028 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | - | chr3_2:58964510-58964529 | None:intergenic | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | + | chr3_2:58964543-58964562 | Msa0414020:intron | 15.0% |
| !! | TATATCTATATATATGTTCA+AGG | - | chr3_2:58964813-58964832 | None:intergenic | 15.0% |
| !! | TATGTTTATAGATTAATTAG+GGG | + | chr3_2:58964876-58964895 | Msa0414020:three_prime_UTR | 15.0% |
| !! | TGTTGAAATTTGATGAATTT+AGG | + | chr3_2:58958642-58958661 | Msa0414020:intron | 20.0% |
| !! | GTTGAAATTTGATGAATTTA+GGG | + | chr3_2:58958643-58958662 | Msa0414020:intron | 20.0% |
| !!! | TATTTTTGTTTTTGCTTTTG+TGG | + | chr3_2:58958764-58958783 | Msa0414020:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | + | chr3_2:58958932-58958951 | Msa0414020:intron | 20.0% |
| !! | ATATATGAATCTGTTCAATA+TGG | + | chr3_2:58959015-58959034 | Msa0414020:intron | 20.0% |
| !!! | TTATTTGGTGTTTGTTTTAT+AGG | + | chr3_2:58959352-58959371 | Msa0414020:intron | 20.0% |
| !!! | GGATTTTGAAAATACTTTTA+TGG | + | chr3_2:58959518-58959537 | Msa0414020:intron | 20.0% |
| !! | ATGATTGAATTGTTCTTATT+TGG | + | chr3_2:58959610-58959629 | Msa0414020:intron | 20.0% |
| !! | TATTCTAAATAGATGTTAAC+AGG | - | chr3_2:58959647-58959666 | None:intergenic | 20.0% |
| !!! | TATTTAGAATATAGTCTGTT+TGG | + | chr3_2:58959656-58959675 | Msa0414020:intron | 20.0% |
| !!! | TGCTAAAAAATATTGACTTT+TGG | + | chr3_2:58959844-58959863 | Msa0414020:intron | 20.0% |
| !!! | TTTAGTACTTGATTTTTATC+TGG | + | chr3_2:58959890-58959909 | Msa0414020:intron | 20.0% |
| !! | GTAAAAAAATTCTTTGCATT+GGG | - | chr3_2:58960157-58960176 | None:intergenic | 20.0% |
| !! | TGTAAAAAAATTCTTTGCAT+TGG | - | chr3_2:58960158-58960177 | None:intergenic | 20.0% |
| !! | TGTTGAAGTTGTTTATATAT+AGG | + | chr3_2:58960347-58960366 | Msa0414020:intron | 20.0% |
| !!! | TTGTAGCTTAAATTTTGAAT+TGG | + | chr3_2:58960573-58960592 | Msa0414020:intron | 20.0% |
| !!! | TGTAGCTTAAATTTTGAATT+GGG | + | chr3_2:58960574-58960593 | Msa0414020:intron | 20.0% |
| !! | AGATTTGATGAAGATAAAAA+TGG | + | chr3_2:58960625-58960644 | Msa0414020:intron | 20.0% |
| !! | GATTTGATGAAGATAAAAAT+GGG | + | chr3_2:58960626-58960645 | Msa0414020:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr3_2:58961197-58961216 | Msa0414020:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | - | chr3_2:58961882-58961901 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | - | chr3_2:58961967-58961986 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | - | chr3_2:58961968-58961987 | None:intergenic | 20.0% |
| !!! | AATCAATTTTATTGCTATCA+AGG | + | chr3_2:58962033-58962052 | Msa0414020:intron | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | - | chr3_2:58962060-58962079 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | - | chr3_2:58962069-58962088 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | + | chr3_2:58962070-58962089 | Msa0414020:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr3_2:58962626-58962645 | Msa0414020:intron | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | + | chr3_2:58962730-58962749 | Msa0414020:intron | 20.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | + | chr3_2:58962986-58963005 | Msa0414020:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | - | chr3_2:58963043-58963062 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | + | chr3_2:58963124-58963143 | Msa0414020:intron | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | + | chr3_2:58963624-58963643 | Msa0414020:CDS | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | + | chr3_2:58963793-58963812 | Msa0414020:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | - | chr3_2:58963872-58963891 | None:intergenic | 20.0% |
| !! | GATAGTAATATAATATGCAA+AGG | - | chr3_2:58963905-58963924 | None:intergenic | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | + | chr3_2:58964523-58964542 | Msa0414020:intron | 20.0% |
| !! | ATGTTTATAGATTAATTAGG+GGG | + | chr3_2:58964877-58964896 | Msa0414020:three_prime_UTR | 20.0% |
| !! | AATTTGATGAATTTAGGGTT+AGG | + | chr3_2:58958648-58958667 | Msa0414020:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | + | chr3_2:58958973-58958992 | Msa0414020:intron | 25.0% |
| ! | TTTAGATAGTAACATATGAG+AGG | - | chr3_2:58959043-58959062 | None:intergenic | 25.0% |
| ! | AATTGAAGCTAAGAAAGATA+AGG | + | chr3_2:58959158-58959177 | Msa0414020:CDS | 25.0% |
| ! | AGAAAATTACCTTGTAAGTA+TGG | - | chr3_2:58959219-58959238 | None:intergenic | 25.0% |
| !!! | TGTTTAGTTTGATTATGGTA+TGG | + | chr3_2:58959383-58959402 | Msa0414020:intron | 25.0% |
| !!! | CATGTTTTGGAAATTTTGTT+TGG | + | chr3_2:58959448-58959467 | Msa0414020:intron | 25.0% |
| !!! | AAATTTTGTTTGGTGTTGAA+GGG | + | chr3_2:58959458-58959477 | Msa0414020:intron | 25.0% |
| !! | TACTTTTATGGGTTTTCAAT+TGG | + | chr3_2:58959530-58959549 | Msa0414020:intron | 25.0% |
| !! | ATTTCATGTTTAACTTTGAG+AGG | + | chr3_2:58959718-58959737 | Msa0414020:intron | 25.0% |
| !!! | GAGAGGATTTTGATATAATT+TGG | + | chr3_2:58959735-58959754 | Msa0414020:intron | 25.0% |
| !! | TATTTAGAATATAGTCTGTC+TGG | + | chr3_2:58960061-58960080 | Msa0414020:intron | 25.0% |
| ! | TTTATGTATCTTTCCATGAT+TGG | - | chr3_2:58960313-58960332 | None:intergenic | 25.0% |
| !! | CTTTATCACTCTTTAAGAAA+AGG | + | chr3_2:58960438-58960457 | Msa0414020:intron | 25.0% |
| !! | ACAAATGAAAGAGTACAATA+TGG | - | chr3_2:58960531-58960550 | None:intergenic | 25.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | + | chr3_2:58960683-58960702 | Msa0414020:intron | 25.0% |
| ! | TATCTGTGATTGTAAATTTG+TGG | + | chr3_2:58960833-58960852 | Msa0414020:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr3_2:58961077-58961096 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | + | chr3_2:58961157-58961176 | Msa0414020:intron | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | - | chr3_2:58961166-58961185 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | + | chr3_2:58961382-58961401 | Msa0414020:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | + | chr3_2:58961495-58961514 | Msa0414020:intron | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr3_2:58961540-58961559 | Msa0414020:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr3_2:58961566-58961585 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | + | chr3_2:58962075-58962094 | Msa0414020:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | + | chr3_2:58962138-58962157 | Msa0414020:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | + | chr3_2:58962252-58962271 | Msa0414020:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | - | chr3_2:58962295-58962314 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | - | chr3_2:58962296-58962315 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | + | chr3_2:58962307-58962326 | Msa0414020:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | + | chr3_2:58962512-58962531 | Msa0414020:intron | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | + | chr3_2:58962577-58962596 | Msa0414020:intron | 25.0% |
| ! | CATGTATATTATCTTGCATA+TGG | + | chr3_2:58962649-58962668 | Msa0414020:intron | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | + | chr3_2:58962787-58962806 | Msa0414020:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | - | chr3_2:58962794-58962813 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | - | chr3_2:58962920-58962939 | None:intergenic | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | + | chr3_2:58962928-58962947 | Msa0414020:intron | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | - | chr3_2:58962978-58962997 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | - | chr3_2:58963039-58963058 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | - | chr3_2:58963040-58963059 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | + | chr3_2:58963047-58963066 | Msa0414020:intron | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | + | chr3_2:58963162-58963181 | Msa0414020:intron | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | - | chr3_2:58963242-58963261 | None:intergenic | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | + | chr3_2:58963430-58963449 | Msa0414020:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr3_2:58963527-58963546 | Msa0414020:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | - | chr3_2:58963768-58963787 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | - | chr3_2:58963973-58963992 | None:intergenic | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | - | chr3_2:58964393-58964412 | None:intergenic | 25.0% |
| ! | TATATGAAAATTGGAAATGC+AGG | + | chr3_2:58964552-58964571 | Msa0414020:intron | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+GGG | + | chr3_2:58964553-58964572 | Msa0414020:intron | 25.0% |
| !!! | CTTTGAGGAAATTTTGTATT+TGG | - | chr3_2:58964673-58964692 | None:intergenic | 25.0% |
| TCAAATTTCAACATGCATGA+GGG | - | chr3_2:58958635-58958654 | None:intergenic | 30.0% | |
| ATCAAATTTCAACATGCATG+AGG | - | chr3_2:58958636-58958655 | None:intergenic | 30.0% | |
| !! | TTTAGGGTTAGGTTTTCATT+TGG | + | chr3_2:58958659-58958678 | Msa0414020:intron | 30.0% |
| ! | TTAGGGTTAGGTTTTCATTT+GGG | + | chr3_2:58958660-58958679 | Msa0414020:intron | 30.0% |
| !!! | TTGTTTTTGCTTTTGTGGTT+TGG | + | chr3_2:58958769-58958788 | Msa0414020:intron | 30.0% |
| !!! | TTGGTGATTCTGGTTTTTTT+TGG | + | chr3_2:58958788-58958807 | Msa0414020:intron | 30.0% |
| !!! | TTGGTTGTTGATTCTGTTTT+TGG | + | chr3_2:58958807-58958826 | Msa0414020:intron | 30.0% |
| !!! | TTTTGAGATGAAATCACACT+TGG | + | chr3_2:58958889-58958908 | Msa0414020:intron | 30.0% |
| CTTGGTATAAATTGCACATA+AGG | + | chr3_2:58958907-58958926 | Msa0414020:intron | 30.0% | |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr3_2:58959089-58959108 | Msa0414020:intron | 30.0% |
| TACCATTAATACCTCTTCTA+TGG | - | chr3_2:58959184-58959203 | None:intergenic | 30.0% | |
| AAATTACCTTGTAAGTATGG+TGG | - | chr3_2:58959216-58959235 | None:intergenic | 30.0% | |
| ! | ACTTACAAGGTAATTTTCTG+AGG | + | chr3_2:58959220-58959239 | Msa0414020:intron | 30.0% |
| ! | ATGTGTTGTGACATGTTTTT+GGG | + | chr3_2:58959288-58959307 | Msa0414020:intron | 30.0% |
| !!! | GTTTTTTGGTATGCATGTTT+TGG | + | chr3_2:58959435-58959454 | Msa0414020:intron | 30.0% |
| !!! | GAAATTTTGTTTGGTGTTGA+AGG | + | chr3_2:58959457-58959476 | Msa0414020:intron | 30.0% |
| ! | TTGGTTTGATACATTTAGCT+TGG | + | chr3_2:58959754-58959773 | Msa0414020:intron | 30.0% |
| !!! | ATTTAGCTTGGTGTTTTTGA+TGG | + | chr3_2:58959766-58959785 | Msa0414020:intron | 30.0% |
| ! | CACAAGATTCTAGAGAAAAT+AGG | + | chr3_2:58959802-58959821 | Msa0414020:intron | 30.0% |
| ATGTATGATAGCAGTAATGT+TGG | + | chr3_2:58959991-58960010 | Msa0414020:intron | 30.0% | |
| TAATCTAAACCTGTTTCAGA+TGG | - | chr3_2:58960132-58960151 | None:intergenic | 30.0% | |
| !!! | TTTTACAGAAAAGAGCATTC+TGG | + | chr3_2:58960171-58960190 | Msa0414020:intron | 30.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | - | chr3_2:58960813-58960832 | None:intergenic | 30.0% |
| GTGATTGTAAATTTGTGGTA+AGG | + | chr3_2:58960838-58960857 | Msa0414020:intron | 30.0% | |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | + | chr3_2:58960889-58960908 | Msa0414020:intron | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | - | chr3_2:58961281-58961300 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | + | chr3_2:58961322-58961341 | Msa0414020:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | + | chr3_2:58961328-58961347 | Msa0414020:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | + | chr3_2:58961768-58961787 | Msa0414020:CDS | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | + | chr3_2:58962102-58962121 | Msa0414020:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | - | chr3_2:58962178-58962197 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | + | chr3_2:58962352-58962371 | Msa0414020:CDS | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | - | chr3_2:58962385-58962404 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | + | chr3_2:58962431-58962450 | Msa0414020:intron | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | - | chr3_2:58962481-58962500 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | + | chr3_2:58962598-58962617 | Msa0414020:intron | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | + | chr3_2:58962840-58962859 | Msa0414020:intron | 30.0% |
| AATTTCTGTCTCCTTTACTT+TGG | + | chr3_2:58963383-58963402 | Msa0414020:intron | 30.0% | |
| ! | GATTTGGTTTCTAAACCATA+AGG | - | chr3_2:58963752-58963771 | None:intergenic | 30.0% |
| TCATTTAAACTTACAGACAC+TGG | - | chr3_2:58963939-58963958 | None:intergenic | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | + | chr3_2:58964134-58964153 | Msa0414020:CDS | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | - | chr3_2:58964264-58964283 | None:intergenic | 30.0% | |
| TGAACATATATGTATACACG+TGG | - | chr3_2:58964327-58964346 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | + | chr3_2:58964327-58964346 | Msa0414020:intron | 30.0% | |
| TATGAAAATTGGAAATGCAG+GGG | + | chr3_2:58964554-58964573 | Msa0414020:intron | 30.0% | |
| TGAAGAAACTGATGAAAAAG+AGG | + | chr3_2:58964778-58964797 | Msa0414020:three_prime_UTR | 30.0% | |
| GAAGAAACTGATGAAAAAGA+GGG | + | chr3_2:58964779-58964798 | Msa0414020:three_prime_UTR | 30.0% | |
| TTGTCAAATATGAACCAGTA+AGG | - | chr3_2:58964919-58964938 | None:intergenic | 30.0% | |
| ! | GAAGGCAAGCTTCAATTTTA+AGG | + | chr3_2:58958590-58958609 | Msa0414020:CDS | 35.0% |
| ! | TAGGGTTAGGTTTTCATTTG+GGG | + | chr3_2:58958661-58958680 | Msa0414020:intron | 35.0% |
| TTACAACCTTGATTTCACCA+TGG | - | chr3_2:58959134-58959153 | None:intergenic | 35.0% | |
| ATGGTGAAATCAAGGTTGTA+AGG | + | chr3_2:58959133-58959152 | Msa0414020:CDS | 35.0% | |
| TGGTGAAATCAAGGTTGTAA+GGG | + | chr3_2:58959134-58959153 | Msa0414020:CDS | 35.0% | |
| ! | CATGTGTTGTGACATGTTTT+TGG | + | chr3_2:58959287-58959306 | Msa0414020:intron | 35.0% |
| !!! | GACATGTTTTTGGGTATGTT+TGG | + | chr3_2:58959297-58959316 | Msa0414020:intron | 35.0% |
| !!! | ATGTTTTTGGGTATGTTTGG+TGG | + | chr3_2:58959300-58959319 | Msa0414020:intron | 35.0% |
| TATTGCTGAAAATGTGTGTC+TGG | + | chr3_2:58959497-58959516 | Msa0414020:intron | 35.0% | |
| TGAGTAATTGAAGACTCTTG+TGG | + | chr3_2:58959582-58959601 | Msa0414020:intron | 35.0% | |
| !! | TGGTCTCATCATTTTTCTTG+AGG | + | chr3_2:58959676-58959695 | Msa0414020:intron | 35.0% |
| !! | GTGTTTTTGATGGTTACAGT+TGG | + | chr3_2:58959776-58959795 | Msa0414020:intron | 35.0% |
| !! | TCTGGTCTCATCATTTTTCT+TGG | + | chr3_2:58960079-58960098 | Msa0414020:intron | 35.0% |
| TAAAAATAAGGAAGACAGGG+AGG | - | chr3_2:58960251-58960270 | None:intergenic | 35.0% | |
| GCGTAAAAATAAGGAAGACA+GGG | - | chr3_2:58960254-58960273 | None:intergenic | 35.0% | |
| ! | TGAGCTTTGGCGTAAAAATA+AGG | - | chr3_2:58960263-58960282 | None:intergenic | 35.0% |
| AACTTCATGAGTACCAATCA+TGG | + | chr3_2:58960297-58960316 | Msa0414020:intron | 35.0% | |
| TGAATTGGGTGTTCTTATTG+AGG | + | chr3_2:58960588-58960607 | Msa0414020:intron | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | + | chr3_2:58960744-58960763 | Msa0414020:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | + | chr3_2:58960772-58960791 | Msa0414020:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | + | chr3_2:58960918-58960937 | Msa0414020:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | + | chr3_2:58960963-58960982 | Msa0414020:CDS | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | + | chr3_2:58961059-58961078 | Msa0414020:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr3_2:58961505-58961524 | Msa0414020:intron | 35.0% |
| TAAACAAAAGGATGGATCAG+TGG | + | chr3_2:58961601-58961620 | Msa0414020:intron | 35.0% | |
| CTGTGTCTGCTAATGATAAT+AGG | + | chr3_2:58961738-58961757 | Msa0414020:CDS | 35.0% | |
| ! | CAGCAGCATTAAACATCTTT+TGG | - | chr3_2:58961907-58961926 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | + | chr3_2:58962142-58962161 | Msa0414020:intron | 35.0% | |
| ! | ACTTCATTGATGGTTGAAGT+AGG | + | chr3_2:58962608-58962627 | Msa0414020:intron | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | + | chr3_2:58962931-58962950 | Msa0414020:intron | 35.0% |
| CATATAGTTGAAGAACTGGT+AGG | - | chr3_2:58962974-58962993 | None:intergenic | 35.0% | |
| !! | CACTTTTAGGTCATTGCTTT+AGG | + | chr3_2:58963137-58963156 | Msa0414020:intron | 35.0% |
| TGCAAATCAGGACAAACTAA+TGG | + | chr3_2:58963174-58963193 | Msa0414020:intron | 35.0% | |
| ! | GCATAAGCAGCTAATTCTTT+TGG | + | chr3_2:58963286-58963305 | Msa0414020:intron | 35.0% |
| AGAGTAATCAGCCAAAGTAA+AGG | - | chr3_2:58963397-58963416 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | + | chr3_2:58963418-58963437 | Msa0414020:intron | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | + | chr3_2:58963484-58963503 | Msa0414020:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr3_2:58963509-58963528 | Msa0414020:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr3_2:58963543-58963562 | Msa0414020:intron | 35.0% |
| GAGTGAAATCCACATAACAA+AGG | - | chr3_2:58963555-58963574 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr3_2:58963557-58963576 | Msa0414020:CDS | 35.0% | |
| ! | TGATTTTCGCAACTTCCTTA+TGG | + | chr3_2:58963734-58963753 | Msa0414020:intron | 35.0% |
| TTCTCTATAGGTCTGCTTTA+CGG | + | chr3_2:58963805-58963824 | Msa0414020:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | - | chr3_2:58963850-58963869 | None:intergenic | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | + | chr3_2:58964082-58964101 | Msa0414020:intron | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | - | chr3_2:58964088-58964107 | None:intergenic | 35.0% | |
| AACACCAATTAAGGGAACTA+AGG | - | chr3_2:58964089-58964108 | None:intergenic | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | - | chr3_2:58964097-58964116 | None:intergenic | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | - | chr3_2:58964098-58964117 | None:intergenic | 35.0% | |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | + | chr3_2:58964228-58964247 | Msa0414020:CDS | 35.0% |
| TGTATCCTGCATATTGTTTC+AGG | + | chr3_2:58964355-58964374 | Msa0414020:intron | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | + | chr3_2:58964356-58964375 | Msa0414020:intron | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | - | chr3_2:58964474-58964493 | None:intergenic | 35.0% | |
| AGAAGGGAAATTGGAGAAGA+AGG | + | chr3_2:58958572-58958591 | Msa0414020:CDS | 40.0% | |
| ATGCATGAGGGAAAGGAAAA+GGG | - | chr3_2:58958623-58958642 | None:intergenic | 40.0% | |
| TTTCAACATGCATGAGGGAA+AGG | - | chr3_2:58958630-58958649 | None:intergenic | 40.0% | |
| ! | AGGGTTAGGTTTTCATTTGG+GGG | + | chr3_2:58958662-58958681 | Msa0414020:intron | 40.0% |
| ! | AGGTTTTCATTTGGGGGAAA+AGG | + | chr3_2:58958668-58958687 | Msa0414020:intron | 40.0% |
| ! | GGTTTTCATTTGGGGGAAAA+GGG | + | chr3_2:58958669-58958688 | Msa0414020:intron | 40.0% |
| ! | TTGGGGGAAAAGGGAATTTT+AGG | + | chr3_2:58958678-58958697 | Msa0414020:intron | 40.0% |
| ! | TGGGGGAAAAGGGAATTTTA+GGG | + | chr3_2:58958679-58958698 | Msa0414020:intron | 40.0% |
| ! | CATTCAATCTGAGACATGCA+TGG | - | chr3_2:58958723-58958742 | None:intergenic | 40.0% |
| !!! | CTTTTGTGGTTTGGTGATTC+TGG | + | chr3_2:58958778-58958797 | Msa0414020:intron | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr3_2:58959114-58959133 | Msa0414020:CDS | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr3_2:58959125-58959144 | Msa0414020:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr3_2:58959170-58959189 | Msa0414020:CDS | 40.0% | |
| !! | GGCCATAGAAGAGGTATTAA+TGG | + | chr3_2:58959179-58959198 | Msa0414020:CDS | 40.0% |
| ACTAAGCCACCATACTTACA+AGG | + | chr3_2:58959207-58959226 | Msa0414020:CDS | 40.0% | |
| TTTCAGATGGATCGTTCTAG+AGG | - | chr3_2:58960119-58960138 | None:intergenic | 40.0% | |
| ! | TAGAACGATCCATCTGAAAC+AGG | + | chr3_2:58960120-58960139 | Msa0414020:intron | 40.0% |
| GGCGTAAAAATAAGGAAGAC+AGG | - | chr3_2:58960255-58960274 | None:intergenic | 40.0% | |
| !! | TATGTGCTGCTTATGAGCTT+TGG | - | chr3_2:58960276-58960295 | None:intergenic | 40.0% |
| ATGGCAGACAGATGCATATA+AGG | - | chr3_2:58960512-58960531 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | + | chr3_2:58960747-58960766 | Msa0414020:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | + | chr3_2:58960752-58960771 | Msa0414020:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | - | chr3_2:58960757-58960776 | None:intergenic | 40.0% | |
| AGAATGACCTCACGAACAAT+TGG | - | chr3_2:58960864-58960883 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | + | chr3_2:58960872-58960891 | Msa0414020:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | + | chr3_2:58960922-58960941 | Msa0414020:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | + | chr3_2:58960923-58960942 | Msa0414020:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | + | chr3_2:58961014-58961033 | Msa0414020:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr3_2:58961027-58961046 | Msa0414020:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr3_2:58961033-58961052 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | - | chr3_2:58961270-58961289 | None:intergenic | 40.0% |
| TGGAACTGATATTGGGGAAA+AGG | - | chr3_2:58961289-58961308 | None:intergenic | 40.0% | |
| CTGTGTTGGAACTGATATTG+GGG | - | chr3_2:58961295-58961314 | None:intergenic | 40.0% | |
| GCTGTGTTGGAACTGATATT+GGG | - | chr3_2:58961296-58961315 | None:intergenic | 40.0% | |
| TGCTGTGTTGGAACTGATAT+TGG | - | chr3_2:58961297-58961316 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | - | chr3_2:58961309-58961328 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | + | chr3_2:58961458-58961477 | Msa0414020:intron | 40.0% |
| TTGCGTGCTAAACAAAAGGA+TGG | + | chr3_2:58961593-58961612 | Msa0414020:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr3_2:58961717-58961736 | None:intergenic | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | - | chr3_2:58961946-58961965 | None:intergenic | 40.0% | |
| AGACTTACAACTCCTTAGAC+TGG | - | chr3_2:58962458-58962477 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | - | chr3_2:58962822-58962841 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | - | chr3_2:58962859-58962878 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | - | chr3_2:58962860-58962879 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | + | chr3_2:58963062-58963081 | Msa0414020:intron | 40.0% |
| ! | AACCATGCTGACTACCTAAA+AGG | - | chr3_2:58963079-58963098 | None:intergenic | 40.0% |
| GATTACTCTGCTACAAGTGA+TGG | + | chr3_2:58963408-58963427 | Msa0414020:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | + | chr3_2:58963417-58963436 | Msa0414020:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr3_2:58963503-58963522 | Msa0414020:intron | 40.0% | |
| AAAAACCTCCTCTTCTTCTC+CGG | + | chr3_2:58963655-58963674 | Msa0414020:CDS | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr3_2:58963842-58963861 | None:intergenic | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | + | chr3_2:58964173-58964192 | Msa0414020:CDS | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | + | chr3_2:58964177-58964196 | Msa0414020:CDS | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | + | chr3_2:58964183-58964202 | Msa0414020:CDS | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | - | chr3_2:58964209-58964228 | None:intergenic | 40.0% | |
| AGATATCTAAGTTCTCCAGC+AGG | - | chr3_2:58964210-58964229 | None:intergenic | 40.0% | |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | + | chr3_2:58964233-58964252 | Msa0414020:CDS | 40.0% |
| GCTTTACTCATGATGCTGAA+AGG | + | chr3_2:58964408-58964427 | Msa0414020:CDS | 40.0% | |
| CGCTTATGGTGACATCATAA+GGG | - | chr3_2:58964604-58964623 | None:intergenic | 40.0% | |
| CCTTATGATGTCACCATAAG+CGG | + | chr3_2:58964602-58964621 | Msa0414020:CDS | 40.0% | |
| !! | CGAGCTTTTAAGGATCTTTG+AGG | - | chr3_2:58964688-58964707 | None:intergenic | 40.0% |
| CAAAGATCCTTAAAAGCTCG+AGG | + | chr3_2:58964688-58964707 | Msa0414020:three_prime_UTR | 40.0% | |
| ! | TCTCAATCCTCGAGCTTTTA+AGG | - | chr3_2:58964698-58964717 | None:intergenic | 40.0% |
| CTTCAAATAGTCAGCCATTC+TGG | - | chr3_2:58964729-58964748 | None:intergenic | 40.0% | |
| ! | AATGGCTGACTATTTGAAGC+AGG | + | chr3_2:58964730-58964749 | Msa0414020:three_prime_UTR | 40.0% |
| ! | TATTTGAAGCAGGATGGCAA+AGG | + | chr3_2:58964740-58964759 | Msa0414020:three_prime_UTR | 40.0% |
| AAGCTTAATAGCAGCCTTAC+TGG | + | chr3_2:58964902-58964921 | Msa0414020:three_prime_UTR | 40.0% | |
| CATGCATGAGGGAAAGGAAA+AGG | - | chr3_2:58958624-58958643 | None:intergenic | 45.0% | |
| GAAGACAGGGAGGAATATCA+AGG | - | chr3_2:58960241-58960260 | None:intergenic | 45.0% | |
| GTTCGTGAGGTCATTCTCAA+AGG | + | chr3_2:58960867-58960886 | Msa0414020:intron | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | + | chr3_2:58960940-58960959 | Msa0414020:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | - | chr3_2:58961262-58961281 | None:intergenic | 45.0% | |
| TCAGTTCCAACACAGCAATC+AGG | + | chr3_2:58961300-58961319 | Msa0414020:intron | 45.0% | |
| CAGTTCCAACACAGCAATCA+GGG | + | chr3_2:58961301-58961320 | Msa0414020:intron | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr3_2:58961354-58961373 | None:intergenic | 45.0% | |
| GTCGTTGCGTGCTAAACAAA+AGG | + | chr3_2:58961589-58961608 | Msa0414020:intron | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr3_2:58961604-58961623 | Msa0414020:intron | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr3_2:58961635-58961654 | Msa0414020:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr3_2:58961639-58961658 | Msa0414020:CDS | 45.0% |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr3_2:58961662-58961681 | Msa0414020:CDS | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr3_2:58961663-58961682 | Msa0414020:CDS | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr3_2:58961673-58961692 | Msa0414020:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr3_2:58961690-58961709 | Msa0414020:CDS | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr3_2:58961700-58961719 | Msa0414020:CDS | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | - | chr3_2:58961718-58961737 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr3_2:58961788-58961807 | Msa0414020:CDS | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | + | chr3_2:58961808-58961827 | Msa0414020:CDS | 45.0% | |
| ATCTTGCATGGTCCAGTCTA+AGG | + | chr3_2:58962443-58962462 | Msa0414020:intron | 45.0% | |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | + | chr3_2:58962529-58962548 | Msa0414020:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | + | chr3_2:58962532-58962551 | Msa0414020:intron | 45.0% |
| TTCCTTACCCATGGTCAGAT+TGG | + | chr3_2:58962849-58962868 | Msa0414020:intron | 45.0% | |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | + | chr3_2:58963074-58963093 | Msa0414020:intron | 45.0% |
| AAACAGCATCTCGTCTTTCG+CGG | + | chr3_2:58963583-58963602 | Msa0414020:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | + | chr3_2:58963600-58963619 | Msa0414020:CDS | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | + | chr3_2:58963601-58963620 | Msa0414020:CDS | 45.0% | |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | + | chr3_2:58964232-58964251 | Msa0414020:CDS | 45.0% |
| AGCACCCTGAAACAATATGC+AGG | - | chr3_2:58964363-58964382 | None:intergenic | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | + | chr3_2:58964440-58964459 | Msa0414020:CDS | 45.0% |
| AAATTGGAAATGCAGGGGAC+AGG | + | chr3_2:58964559-58964578 | Msa0414020:intron | 45.0% | |
| TATGGTGACATCATAAGGGC+TGG | - | chr3_2:58964600-58964619 | None:intergenic | 45.0% | |
| CCGCTTATGGTGACATCATA+AGG | - | chr3_2:58964605-58964624 | None:intergenic | 45.0% | |
| ATATCTGGCCTCACTAATCC+TGG | - | chr3_2:58964633-58964652 | None:intergenic | 45.0% | |
| GCCAGATATCATGCATGAGA+GGG | + | chr3_2:58964644-58964663 | Msa0414020:exon | 45.0% | |
| TCCCTCTCATGCATGATATC+TGG | - | chr3_2:58964648-58964667 | None:intergenic | 45.0% | |
| TTGAGATTCCAGAGCCAGAA+TGG | + | chr3_2:58964712-58964731 | Msa0414020:three_prime_UTR | 45.0% | |
| ! | GCTGACTATTTGAAGCAGGA+TGG | + | chr3_2:58964734-58964753 | Msa0414020:three_prime_UTR | 45.0% |
| !! | TAAAAAAAAATATTGAAATA+TGG | - | chr3_2:58962201-58962220 | None:intergenic | 5.0% |
| !!! | TCAATATTTTTTTTTATTTA+TGG | + | chr3_2:58962205-58962224 | Msa0414020:intron | 5.0% |
| GGTAAGGCCAATTGTTCGTG+AGG | + | chr3_2:58960854-58960873 | Msa0414020:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr3_2:58961514-58961533 | Msa0414020:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr3_2:58961619-58961638 | Msa0414020:intron | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr3_2:58961623-58961642 | Msa0414020:CDS | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr3_2:58961638-58961657 | Msa0414020:CDS | 50.0% |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr3_2:58961643-58961662 | Msa0414020:CDS | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr3_2:58961666-58961685 | Msa0414020:CDS | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr3_2:58961672-58961691 | Msa0414020:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr3_2:58961806-58961825 | None:intergenic | 50.0% | |
| GAATGAGATTGAAGCGCGCA+TGG | + | chr3_2:58961844-58961863 | Msa0414020:CDS | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | - | chr3_2:58962544-58962563 | None:intergenic | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | - | chr3_2:58962854-58962873 | None:intergenic | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr3_2:58963274-58963293 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | + | chr3_2:58963591-58963610 | Msa0414020:CDS | 50.0% | |
| !! | CTTTGGAGTCACGAACCATC+CGG | - | chr3_2:58963677-58963696 | None:intergenic | 50.0% |
| ATAGGCAACGCGGAGTTTGA+AGG | - | chr3_2:58963832-58963851 | None:intergenic | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | - | chr3_2:58964248-58964267 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | + | chr3_2:58964249-58964268 | Msa0414020:CDS | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | + | chr3_2:58964444-58964463 | Msa0414020:CDS | 50.0% | |
| AATCCTGGACTCACCGCTTA+TGG | - | chr3_2:58964618-58964637 | None:intergenic | 50.0% | |
| GGCCAGATATCATGCATGAG+AGG | + | chr3_2:58964643-58964662 | Msa0414020:exon | 50.0% | |
| !! | ATAGTCAGCCATTCTGGCTC+TGG | - | chr3_2:58964723-58964742 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr3_2:58961682-58961701 | Msa0414020:CDS | 55.0% | |
| GAGATTGAAGCGCGCATGGT+TGG | + | chr3_2:58961848-58961867 | Msa0414020:intron | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | + | chr3_2:58962540-58962559 | Msa0414020:intron | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | + | chr3_2:58963209-58963228 | Msa0414020:intron | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | - | chr3_2:58963215-58963234 | None:intergenic | 55.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | + | chr3_2:58963214-58963233 | Msa0414020:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | - | chr3_2:58963219-58963238 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr3_2:58963269-58963288 | None:intergenic | 55.0% | |
| ACCTCCTCTTCTTCTCCGGA+TGG | + | chr3_2:58963659-58963678 | Msa0414020:CDS | 55.0% | |
| ACCATCCGGAGAAGAAGAGG+AGG | - | chr3_2:58963663-58963682 | None:intergenic | 55.0% | |
| CGAACCATCCGGAGAAGAAG+AGG | - | chr3_2:58963666-58963685 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | + | chr3_2:58964243-58964262 | Msa0414020:CDS | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | + | chr3_2:58964462-58964481 | Msa0414020:intron | 55.0% |
| AAATGCAGGGGACAGGCTTC+CGG | + | chr3_2:58964566-58964585 | Msa0414020:intron | 55.0% | |
| ! | ATAAGGGCTGGTGCACCTAC+CGG | - | chr3_2:58964588-58964607 | None:intergenic | 55.0% |
| TCACCATAAGCGGTGAGTCC+AGG | + | chr3_2:58964612-58964631 | Msa0414020:CDS | 55.0% | |
| ! | CGGTGAGTCCAGGATTAGTG+AGG | + | chr3_2:58964622-58964641 | Msa0414020:CDS | 55.0% |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr3_2:58963263-58963282 | Msa0414020:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr3_2:58963264-58963283 | Msa0414020:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | + | chr3_2:58964454-58964473 | Msa0414020:intron | 60.0% |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | + | chr3_2:58961854-58961873 | Msa0414020:intron | 65.0% |
| ACGTCTGCAACGCCGCACCT+TGG | + | chr3_2:58963254-58963273 | Msa0414020:intron | 65.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | + | chr3_2:58964192-58964211 | Msa0414020:CDS | 65.0% | |
| GCAGGGGACAGGCTTCCGGT+AGG | + | chr3_2:58964570-58964589 | Msa0414020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 58958564 | 58964967 | 58958564 | ID=Msa0414020;Name=Msa0414020 |
| chr3_2 | mRNA | 58958564 | 58964967 | 58958564 | ID=Msa0414020-mRNA-1;Parent=Msa0414020;Name=Msa0414020-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.44|0.3|0.9|0.55|0.8|10|306|335 |
| chr3_2 | exon | 58958564 | 58958611 | 58958564 | ID=Msa0414020-mRNA-1:exon:12237;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58959111 | 58959228 | 58959111 | ID=Msa0414020-mRNA-1:exon:12238;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58960944 | 58960990 | 58960944 | ID=Msa0414020-mRNA-1:exon:12239;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58961517 | 58961535 | 58961517 | ID=Msa0414020-mRNA-1:exon:12240;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58961621 | 58961865 | 58961621 | ID=Msa0414020-mRNA-1:exon:12241;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58962337 | 58962393 | 58962337 | ID=Msa0414020-mRNA-1:exon:12242;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58963549 | 58963680 | 58963549 | ID=Msa0414020-mRNA-1:exon:12243;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58964117 | 58964281 | 58964117 | ID=Msa0414020-mRNA-1:exon:12244;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58964377 | 58964465 | 58964377 | ID=Msa0414020-mRNA-1:exon:12245;Parent=Msa0414020-mRNA-1 |
| chr3_2 | exon | 58964574 | 58964967 | 58964574 | ID=Msa0414020-mRNA-1:exon:12246;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58958564 | 58958611 | 58958564 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58959111 | 58959228 | 58959111 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58960944 | 58960990 | 58960944 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58961517 | 58961535 | 58961517 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58961621 | 58961865 | 58961621 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58962337 | 58962393 | 58962337 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58963549 | 58963680 | 58963549 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58964117 | 58964281 | 58964117 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58964377 | 58964465 | 58964377 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | CDS | 58964574 | 58964661 | 58964574 | ID=Msa0414020-mRNA-1:cds;Parent=Msa0414020-mRNA-1 |
| chr3_2 | three_prime_UTR | 58964662 | 58964967 | 58964662 | ID=Msa0414020-mRNA-1:three_prime_utr;Parent=Msa0414020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
