AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015110 MtrunA17_Chr1g0166011 97.849 186 4 0 1 186 1 186 5.29e-137 380
Msa0015110 MtrunA17_Chr1g0187961 73.626 182 34 3 1 182 11 178 2.00e-91 264
Msa0015110 MtrunA17_Chr1g0184801 65.625 192 58 3 1 184 12 203 9.97e-88 256
Msa0015110 MtrunA17_Chr7g0260621 63.402 194 60 4 1 184 11 203 3.20e-83 244
Msa0015110 MtrunA17_Chr6g0486121 42.358 229 86 6 1 183 15 243 2.92e-53 170
Msa0015110 MtrunA17_Chr2g0331411 48.705 193 66 5 17 182 128 314 1.26e-50 166
Msa0015110 MtrunA17_Chr1g0190711 43.590 234 75 8 1 183 15 242 1.43e-50 163
Msa0015110 MtrunA17_Chr1g0184791 44.828 232 69 9 1 183 13 234 1.88e-50 162
Msa0015110 MtrunA17_Chr1g0187921 44.144 222 81 7 1 183 8 225 5.11e-50 161
Msa0015110 MtrunA17_Chr5g0428141 54.667 150 44 4 58 183 187 336 1.30e-47 158
Msa0015110 MtrunA17_Chr8g0366881 38.745 271 78 7 1 183 67 337 1.75e-47 158
Msa0015110 MtrunA17_Chr5g0411501 36.861 274 82 8 1 183 51 324 2.10e-47 157
Msa0015110 MtrunA17_Chr7g0260641 40.435 230 89 6 1 183 11 239 5.87e-47 154
Msa0015110 MtrunA17_Chr8g0390281 40.310 258 78 10 1 182 24 281 7.78e-45 150
Msa0015110 MtrunA17_Chr4g0004181 45.304 181 78 5 3 183 8 167 5.99e-40 134
Msa0015110 MtrunA17_Chr2g0332141 56.989 93 31 2 91 174 8 100 4.30e-30 107
Msa0015110 MtrunA17_Chr8g0340731 30.620 258 106 7 1 185 10 267 1.26e-28 107
Msa0015110 MtrunA17_Chr2g0330951 30.800 250 108 7 2 186 13 262 1.06e-27 105
Msa0015110 MtrunA17_Chr1g0183251 33.146 178 58 4 66 183 81 257 2.91e-26 101
Msa0015110 MtrunA17_Chr4g0069561 38.095 126 77 1 55 179 59 184 1.50e-25 97.1
Msa0015110 MtrunA17_Chr7g0270851 41.748 103 56 2 83 184 62 161 9.49e-21 84.0
Msa0015110 MtrunA17_Chr1g0193861 34.395 157 91 5 22 175 23 170 1.21e-20 84.3
Msa0015110 MtrunA17_Chr3g0137601 31.496 127 67 3 68 179 89 210 3.42e-18 78.6
Msa0015110 MtrunA17_Chr1g0209181 37.313 134 69 4 53 175 39 168 4.30e-16 72.4
Msa0015110 MtrunA17_Chr4g0064131 31.148 122 63 3 68 176 93 206 1.03e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015110 AT1G04240.1 60.622 193 61 3 1 186 5 189 4.72e-80 236
Msa0015110 AT5G43700.1 61.905 189 53 4 1 185 11 184 2.49e-79 234
Msa0015110 AT1G04240.2 60.622 193 61 3 1 186 105 289 3.39e-79 238
Msa0015110 AT3G23030.1 60.109 183 51 3 1 182 9 170 1.22e-68 207
Msa0015110 AT3G23030.2 60.109 183 51 3 1 182 96 257 4.93e-68 208
Msa0015110 AT4G14560.1 60.335 179 50 3 1 179 7 164 9.29e-66 199
Msa0015110 AT3G04730.1 45.022 231 72 8 1 183 2 225 8.69e-55 174
Msa0015110 AT4G14550.2 44.344 221 81 6 1 183 1 217 2.68e-53 170
Msa0015110 AT4G14550.1 43.891 221 82 6 1 183 1 217 2.23e-52 167
Msa0015110 AT1G04250.1 45.327 214 84 7 1 183 7 218 4.45e-51 164
Msa0015110 AT4G29080.1 38.610 259 81 6 1 183 38 294 2.43e-50 164
Msa0015110 AT3G23050.1 43.860 228 81 7 1 183 6 231 1.25e-49 161
Msa0015110 AT2G22670.5 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0015110 AT2G22670.2 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0015110 AT2G22670.3 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0015110 AT2G22670.1 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0015110 AT2G22670.4 38.868 265 83 7 1 186 64 328 8.34e-48 159
Msa0015110 AT3G15540.1 46.486 185 92 4 3 183 8 189 6.49e-45 147
Msa0015110 AT5G65670.1 54.110 146 41 4 64 183 180 325 3.99e-44 149
Msa0015110 AT5G65670.2 54.110 146 41 4 64 183 180 325 4.06e-44 149
Msa0015110 AT1G52830.1 45.405 185 94 5 1 183 6 185 5.34e-42 139
Msa0015110 AT1G15580.1 46.111 180 70 7 3 181 10 163 4.02e-41 136
Msa0015110 AT4G14550.3 40.201 199 77 6 1 161 1 195 1.95e-39 133
Msa0015110 AT3G23050.2 40.097 207 77 7 1 162 6 210 2.93e-36 125
Msa0015110 AT2G33310.3 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0015110 AT2G33310.1 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0015110 AT3G16500.1 31.878 229 105 7 4 184 36 261 3.47e-30 111
Msa0015110 AT2G33310.2 37.572 173 68 4 52 184 61 233 6.43e-30 110
Msa0015110 AT3G16500.2 31.718 227 106 7 4 184 36 259 7.38e-30 110
Msa0015110 AT1G04550.2 39.080 174 62 5 53 183 52 224 2.12e-29 108
Msa0015110 AT4G28640.3 38.182 165 64 5 57 183 78 242 1.68e-27 104
Msa0015110 AT4G28640.1 38.037 163 63 5 57 181 78 240 3.79e-27 103
Msa0015110 AT4G28640.2 38.037 163 63 5 57 181 78 240 2.04e-26 102
Msa0015110 AT3G17600.1 38.514 148 70 5 36 175 20 154 8.08e-26 97.4
Msa0015110 AT5G25890.1 34.715 193 88 7 2 183 3 168 1.05e-25 97.8
Msa0015110 AT4G14550.4 38.065 155 66 5 1 129 1 151 1.29e-24 95.1
Msa0015110 AT1G51950.1 30.942 223 98 6 2 178 38 250 1.52e-24 97.1
Msa0015110 AT1G04100.1 37.952 166 52 4 69 183 95 260 2.18e-24 96.3
Msa0015110 AT3G62100.1 47.191 89 47 0 87 175 80 168 1.09e-22 89.7
Msa0015110 AT2G46990.1 45.055 91 50 0 87 177 82 172 1.10e-22 89.7
Msa0015110 AT3G23050.3 38.415 164 66 6 1 131 6 167 2.27e-22 89.0
Msa0015110 AT2G46990.2 47.368 76 40 0 87 162 82 157 1.61e-17 75.9
Msa0015110 AT3G62100.2 47.368 76 40 0 87 162 80 155 4.93e-17 74.7
Msa0015110 AT4G32280.2 40.698 86 46 2 90 175 118 198 5.79e-15 70.5
Msa0015110 AT4G32280.1 40.698 86 46 2 90 175 160 240 1.84e-14 69.7
Msa0015110 AT1G80390.1 35.115 131 55 4 2 125 15 122 2.83e-14 66.6
Msa0015110 AT1G15050.2 39.326 89 53 1 91 179 62 149 7.82e-12 60.8
Msa0015110 AT1G15050.1 39.326 89 53 1 91 179 94 181 1.44e-11 60.8
Msa0015110 AT2G46530.2 37.363 91 51 2 92 182 406 490 9.61e-11 60.1
Msa0015110 AT2G46530.1 37.363 91 51 2 92 182 493 577 9.73e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAGTGACTATATATTT+TGG 0.161323 1_1:+24459436 Msa0015110:five_prime_UTR
CTTTCAATTGCTGGAGCTAA+TGG 0.222205 1_1:+24461276 Msa0015110:three_prime_UTR
TTCTGAAAGAGAGGGTTATA+AGG 0.253325 1_1:+24460417 Msa0015110:CDS
AGCAACTTTGTATACTTATA+CGG 0.270093 1_1:+24461485 Msa0015110:three_prime_UTR
AGAATCTGTTTCAATTTCTA+AGG 0.274640 1_1:+24459608 Msa0015110:CDS
TCCAGAGCTTTGAGAAGTTC+TGG 0.290261 1_1:-24460052 None:intergenic
GGCACAGAAGCAAGAGGTTT+GGG 0.299475 1_1:+24461174 Msa0015110:CDS
AAAGTCAATCTTTCAATTGC+TGG 0.315268 1_1:+24461267 Msa0015110:three_prime_UTR
CCACCATGCCAATCTTGATT+TGG 0.337114 1_1:+24461320 Msa0015110:intron
AAGATTGACTTGAGGGTCTA+TGG 0.339850 1_1:+24460022 Msa0015110:CDS
CCCTCAAGTCAATCTTTCTA+AGG 0.345671 1_1:-24460015 None:intergenic
CAAAGCAACTGAGCTTAGAT+TGG 0.355831 1_1:+24459497 Msa0015110:CDS
GGCCACCAATTAGGTCTTAC+AGG 0.362405 1_1:+24459924 Msa0015110:CDS
CCTTAGAAAGATTGACTTGA+GGG 0.383287 1_1:+24460015 Msa0015110:CDS
TAGTAGGGTGGCCACCAATT+AGG 0.390633 1_1:+24459915 Msa0015110:CDS
TCTTGATTTGGAAGGGAAGA+TGG 0.411600 1_1:+24461332 Msa0015110:three_prime_UTR
AGGCACAGAAGCAAGAGGTT+TGG 0.421102 1_1:+24461173 Msa0015110:CDS
CTTCCCTTCCAAATCAAGAT+TGG 0.427307 1_1:-24461328 None:intergenic
TTGATTAAAACTTACTTGGC+AGG 0.428702 1_1:-24459675 None:intergenic
GAAGCAAGAGGTTTGGGTTG+TGG 0.428884 1_1:+24461180 Msa0015110:CDS
GTCACCATCCTTGTCTTCAT+AGG 0.428945 1_1:-24460458 None:intergenic
TATTGCAGGGCAAAGATAGT+AGG 0.441299 1_1:+24459899 Msa0015110:intron
TCCAGAACTTCTCAAAGCTC+TGG 0.452884 1_1:+24460051 Msa0015110:CDS
CCATCCTTGTCTTCATAGGT+TGG 0.460968 1_1:-24460454 None:intergenic
AAAGCAACTGAGCTTAGATT+GGG 0.468227 1_1:+24459498 Msa0015110:CDS
ACAGATTCTTCAGAAGTTTG+AGG 0.488351 1_1:-24459594 None:intergenic
AAGTCAATCTTTCTAAGGTA+AGG 0.499111 1_1:-24460010 None:intergenic
CATGCCAATCTTGATTTGGA+AGG 0.508214 1_1:+24461324 Msa0015110:intron
GAGCTTAGATTGGGATTACC+AGG 0.513920 1_1:+24459507 Msa0015110:CDS
TATGTAAAAGTGAGCATGGA+TGG 0.517094 1_1:+24459983 Msa0015110:CDS
TTCCTGTAAGACCTAATTGG+TGG 0.520095 1_1:-24459926 None:intergenic
TCTGAAAGAGAGGGTTATAA+GGG 0.521294 1_1:+24460418 Msa0015110:CDS
ATTACCAGGGACAGATGAAA+AGG 0.535679 1_1:+24459521 Msa0015110:CDS
TAAAACTTACTTGGCAGGAG+GGG 0.540132 1_1:-24459670 None:intergenic
GATGGTGACTGGATGCTAGT+TGG 0.551132 1_1:+24460472 Msa0015110:CDS
AATTAGAATTAGAAGAGTCA+TGG 0.559360 1_1:+24461508 Msa0015110:three_prime_UTR
AGGTGAGTATTCTGAAAGAG+AGG 0.559449 1_1:+24460408 Msa0015110:intron
TGTAACAATTGTGTGAAAGT+AGG 0.559942 1_1:-24459348 None:intergenic
TGCTAGTTGGAGATGTTCCA+TGG 0.562736 1_1:+24460485 Msa0015110:CDS
ATGCCAATCTTGATTTGGAA+GGG 0.567262 1_1:+24461325 Msa0015110:intron
ACCTATGGTCAATTTGAACA+TGG 0.570995 1_1:-24460077 None:intergenic
ATTGCAGGGCAAAGATAGTA+GGG 0.580888 1_1:+24459900 Msa0015110:intron
TTGCAAGATGCTGAAGTTGG+TGG 0.588995 1_1:+24459956 Msa0015110:CDS
GATCTATGTAAAAGTGAGCA+TGG 0.590257 1_1:+24459979 Msa0015110:CDS
ACCATGTTCAAATTGACCAT+AGG 0.591335 1_1:+24460076 Msa0015110:CDS
ACTTTGCAAGATGCTGAAGT+TGG 0.595544 1_1:+24459953 Msa0015110:CDS
ATTAAAACTTACTTGGCAGG+AGG 0.597037 1_1:-24459672 None:intergenic
ATGAAGACAAGGATGGTGAC+TGG 0.608145 1_1:+24460461 Msa0015110:CDS
TTAAAACTTACTTGGCAGGA+GGG 0.608705 1_1:-24459671 None:intergenic
ATGTTATTGAAAATGTTCAG+TGG 0.608738 1_1:-24461443 None:intergenic
GGAGAGAGAACTTACTCCCA+TGG 0.609032 1_1:-24460502 None:intergenic
TGCAAGATGCTGAAGTTGGT+GGG 0.610809 1_1:+24459957 Msa0015110:CDS
ACCTTAGAAAGATTGACTTG+AGG 0.615450 1_1:+24460014 Msa0015110:CDS
GGTGAGTATTCTGAAAGAGA+GGG 0.617046 1_1:+24460409 Msa0015110:intron
GCTAGTTGGAGATGTTCCAT+GGG 0.627077 1_1:+24460486 Msa0015110:CDS
AAGGAGATGAAAACAATACA+TGG 0.630474 1_1:+24459540 Msa0015110:CDS
AAAAGACTAAGAATCATGAA+AGG 0.643848 1_1:+24461153 Msa0015110:CDS
TGCACCAACCTATGAAGACA+AGG 0.644295 1_1:+24460450 Msa0015110:CDS
TTCAAATGATGATCAGCATG+TGG 0.651916 1_1:+24459632 Msa0015110:CDS
ATGAAAGGCACAGAAGCAAG+AGG 0.656651 1_1:+24461168 Msa0015110:CDS
AGCTTAGATTGGGATTACCA+GGG 0.671776 1_1:+24459508 Msa0015110:CDS
GTGTGAAAGTAGGAAATGCA+AGG 0.671895 1_1:-24459338 None:intergenic
CCAACCTATGAAGACAAGGA+TGG 0.673846 1_1:+24460454 Msa0015110:CDS
ATTGACTTGAGGGTCTATGG+AGG 0.675898 1_1:+24460025 Msa0015110:CDS
GCAGGGCAAAGATAGTAGGG+TGG 0.730499 1_1:+24459903 Msa0015110:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_1:24460111-24460130 Msa0015110:intron 10.0%
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_1:24460111-24460130 Msa0015110:intron 10.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_1:24459436-24459455 Msa0015110:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_1:24460791-24460810 Msa0015110:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_1:24460978-24460997 Msa0015110:intron 15.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_1:24459436-24459455 Msa0015110:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_1:24460791-24460810 Msa0015110:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_1:24460978-24460997 Msa0015110:intron 15.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_1:24459431-24459450 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_1:24459450-24459469 Msa0015110:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_1:24459451-24459470 Msa0015110:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_1:24460257-24460276 Msa0015110:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_1:24460526-24460545 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_1:24460527-24460546 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_1:24460636-24460655 Msa0015110:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_1:24461070-24461089 None:intergenic 20.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_1:24459431-24459450 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_1:24459450-24459469 Msa0015110:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_1:24459451-24459470 Msa0015110:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_1:24460257-24460276 Msa0015110:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_1:24460526-24460545 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_1:24460527-24460546 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_1:24460636-24460655 Msa0015110:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_1:24461070-24461089 None:intergenic 20.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_1:24459379-24459398 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_1:24459378-24459397 Msa0015110:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_1:24459608-24459627 Msa0015110:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_1:24459682-24459701 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_1:24459680-24459699 Msa0015110:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_1:24459707-24459726 Msa0015110:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_1:24459838-24459857 Msa0015110:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_1:24459885-24459904 Msa0015110:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_1:24459886-24459905 Msa0015110:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_1:24460095-24460114 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_1:24460627-24460646 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_1:24461153-24461172 Msa0015110:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_1:24461230-24461249 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_1:24461236-24461255 Msa0015110:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_1:24461371-24461390 Msa0015110:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_1:24461446-24461465 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_1:24461485-24461504 Msa0015110:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_1:24461508-24461527 Msa0015110:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_1:24461565-24461584 Msa0015110:three_prime_UTR 25.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_1:24459379-24459398 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_1:24459378-24459397 Msa0015110:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_1:24459608-24459627 Msa0015110:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_1:24459682-24459701 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_1:24459680-24459699 Msa0015110:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_1:24459707-24459726 Msa0015110:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_1:24459838-24459857 Msa0015110:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_1:24459885-24459904 Msa0015110:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_1:24459886-24459905 Msa0015110:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_1:24460095-24460114 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_1:24460627-24460646 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_1:24461153-24461172 Msa0015110:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_1:24461230-24461249 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_1:24461236-24461255 Msa0015110:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_1:24461371-24461390 Msa0015110:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_1:24461446-24461465 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_1:24461485-24461504 Msa0015110:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_1:24461508-24461527 Msa0015110:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_1:24461565-24461584 Msa0015110:three_prime_UTR 25.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_1:24459327-24459346 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_1:24459351-24459370 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_1:24459463-24459482 Msa0015110:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_1:24459540-24459559 Msa0015110:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_1:24459678-24459697 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_1:24459932-24459951 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_1:24460013-24460032 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_1:24460141-24460160 Msa0015110:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_1:24460142-24460161 Msa0015110:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_1:24460323-24460342 Msa0015110:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_1:24460388-24460407 Msa0015110:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_1:24460672-24460691 Msa0015110:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_1:24460678-24460697 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_1:24460717-24460736 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_1:24461016-24461035 Msa0015110:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_1:24461047-24461066 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_1:24461244-24461263 Msa0015110:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_1:24461267-24461286 Msa0015110:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_1:24461290-24461309 Msa0015110:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_1:24461391-24461410 Msa0015110:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_1:24461392-24461411 Msa0015110:three_prime_UTR 30.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_1:24459327-24459346 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_1:24459351-24459370 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_1:24459463-24459482 Msa0015110:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_1:24459540-24459559 Msa0015110:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_1:24459678-24459697 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_1:24459932-24459951 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_1:24460013-24460032 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_1:24460141-24460160 Msa0015110:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_1:24460142-24460161 Msa0015110:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_1:24460323-24460342 Msa0015110:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_1:24460388-24460407 Msa0015110:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_1:24460672-24460691 Msa0015110:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_1:24460678-24460697 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_1:24460717-24460736 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_1:24461016-24461035 Msa0015110:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_1:24461047-24461066 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_1:24461244-24461263 Msa0015110:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_1:24461267-24461286 Msa0015110:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_1:24461290-24461309 Msa0015110:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_1:24461391-24461410 Msa0015110:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_1:24461392-24461411 Msa0015110:three_prime_UTR 30.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_1:24459470-24459489 Msa0015110:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_1:24459498-24459517 Msa0015110:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_1:24459597-24459616 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_1:24459632-24459651 Msa0015110:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_1:24459674-24459693 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_1:24459675-24459694 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_1:24459819-24459838 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_1:24459979-24459998 Msa0015110:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_1:24459983-24460002 Msa0015110:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_1:24460014-24460033 Msa0015110:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_1:24460015-24460034 Msa0015110:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_1:24460076-24460095 Msa0015110:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_1:24460080-24460099 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_1:24460199-24460218 Msa0015110:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_1:24460417-24460436 Msa0015110:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_1:24460418-24460437 Msa0015110:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_1:24460568-24460587 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_1:24460748-24460767 Msa0015110:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_1:24460906-24460925 Msa0015110:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_1:24461042-24461061 Msa0015110:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_1:24461151-24461170 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_1:24461325-24461344 Msa0015110:intron 35.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_1:24459470-24459489 Msa0015110:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_1:24459498-24459517 Msa0015110:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_1:24459597-24459616 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_1:24459632-24459651 Msa0015110:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_1:24459674-24459693 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_1:24459675-24459694 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_1:24459819-24459838 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_1:24459979-24459998 Msa0015110:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_1:24459983-24460002 Msa0015110:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_1:24460014-24460033 Msa0015110:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_1:24460015-24460034 Msa0015110:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_1:24460076-24460095 Msa0015110:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_1:24460080-24460099 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_1:24460199-24460218 Msa0015110:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_1:24460417-24460436 Msa0015110:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_1:24460418-24460437 Msa0015110:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_1:24460568-24460587 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_1:24460748-24460767 Msa0015110:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_1:24460906-24460925 Msa0015110:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_1:24461042-24461061 Msa0015110:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_1:24461151-24461170 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_1:24461325-24461344 Msa0015110:intron 35.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_1:24459341-24459360 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_1:24459497-24459516 Msa0015110:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_1:24459508-24459527 Msa0015110:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_1:24459521-24459540 Msa0015110:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_1:24459673-24459692 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_1:24459734-24459753 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_1:24459734-24459753 Msa0015110:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_1:24459899-24459918 Msa0015110:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_1:24459900-24459919 Msa0015110:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_1:24459929-24459948 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_1:24459953-24459972 Msa0015110:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_1:24460018-24460037 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_1:24460022-24460041 Msa0015110:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_1:24460408-24460427 Msa0015110:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_1:24460409-24460428 Msa0015110:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_1:24460569-24460588 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_1:24460570-24460589 Msa0015110:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_1:24460578-24460597 Msa0015110:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_1:24460583-24460602 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_1:24460600-24460619 Msa0015110:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_1:24460739-24460758 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_1:24460752-24460771 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_1:24460905-24460924 Msa0015110:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_1:24461276-24461295 Msa0015110:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_1:24461326-24461345 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_1:24461324-24461343 Msa0015110:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_1:24461331-24461350 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_1:24461332-24461351 Msa0015110:three_prime_UTR 40.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_1:24459341-24459360 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_1:24459497-24459516 Msa0015110:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_1:24459508-24459527 Msa0015110:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_1:24459521-24459540 Msa0015110:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_1:24459673-24459692 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_1:24459734-24459753 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_1:24459734-24459753 Msa0015110:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_1:24459899-24459918 Msa0015110:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_1:24459900-24459919 Msa0015110:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_1:24459929-24459948 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_1:24459953-24459972 Msa0015110:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_1:24460018-24460037 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_1:24460022-24460041 Msa0015110:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_1:24460408-24460427 Msa0015110:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_1:24460409-24460428 Msa0015110:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_1:24460569-24460588 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_1:24460570-24460589 Msa0015110:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_1:24460578-24460597 Msa0015110:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_1:24460583-24460602 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_1:24460600-24460619 Msa0015110:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_1:24460739-24460758 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_1:24460752-24460771 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_1:24460905-24460924 Msa0015110:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_1:24461276-24461295 Msa0015110:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_1:24461326-24461345 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_1:24461324-24461343 Msa0015110:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_1:24461331-24461350 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_1:24461332-24461351 Msa0015110:three_prime_UTR 40.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_1:24459507-24459526 Msa0015110:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_1:24459528-24459547 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_1:24459735-24459754 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_1:24459792-24459811 Msa0015110:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_1:24459956-24459975 Msa0015110:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_1:24459957-24459976 Msa0015110:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_1:24460025-24460044 Msa0015110:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_1:24460051-24460070 Msa0015110:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_1:24460055-24460074 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_1:24460450-24460469 Msa0015110:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_1:24460457-24460476 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_1:24460454-24460473 Msa0015110:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_1:24460461-24460480 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_1:24460461-24460480 Msa0015110:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_1:24460485-24460504 Msa0015110:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_1:24460486-24460505 Msa0015110:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_1:24460840-24460859 Msa0015110:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_1:24460845-24460864 Msa0015110:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_1:24460846-24460865 Msa0015110:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_1:24460890-24460909 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_1:24460914-24460933 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_1:24460915-24460934 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_1:24461168-24461187 Msa0015110:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_1:24461323-24461342 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_1:24461320-24461339 Msa0015110:intron 45.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_1:24459507-24459526 Msa0015110:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_1:24459528-24459547 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_1:24459735-24459754 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_1:24459792-24459811 Msa0015110:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_1:24459956-24459975 Msa0015110:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_1:24459957-24459976 Msa0015110:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_1:24460025-24460044 Msa0015110:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_1:24460051-24460070 Msa0015110:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_1:24460055-24460074 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_1:24460450-24460469 Msa0015110:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_1:24460457-24460476 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_1:24460454-24460473 Msa0015110:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_1:24460461-24460480 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_1:24460461-24460480 Msa0015110:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_1:24460485-24460504 Msa0015110:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_1:24460486-24460505 Msa0015110:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_1:24460840-24460859 Msa0015110:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_1:24460845-24460864 Msa0015110:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_1:24460846-24460865 Msa0015110:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_1:24460890-24460909 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_1:24460914-24460933 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_1:24460915-24460934 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_1:24461168-24461187 Msa0015110:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_1:24461323-24461342 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_1:24461320-24461339 Msa0015110:intron 45.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_1:24459793-24459812 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_1:24459791-24459810 Msa0015110:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_1:24459808-24459827 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_1:24459915-24459934 Msa0015110:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_1:24459924-24459943 Msa0015110:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_1:24460472-24460491 Msa0015110:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_1:24460505-24460524 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_1:24460821-24460840 Msa0015110:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_1:24460822-24460841 Msa0015110:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_1:24460831-24460850 Msa0015110:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_1:24460838-24460857 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_1:24460839-24460858 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_1:24460887-24460906 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_1:24460909-24460928 Msa0015110:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_1:24461173-24461192 Msa0015110:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_1:24461174-24461193 Msa0015110:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_1:24461180-24461199 Msa0015110:CDS 50.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_1:24459793-24459812 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_1:24459791-24459810 Msa0015110:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_1:24459808-24459827 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_1:24459915-24459934 Msa0015110:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_1:24459924-24459943 Msa0015110:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_1:24460472-24460491 Msa0015110:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_1:24460505-24460524 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_1:24460821-24460840 Msa0015110:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_1:24460822-24460841 Msa0015110:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_1:24460831-24460850 Msa0015110:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_1:24460838-24460857 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_1:24460839-24460858 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_1:24460887-24460906 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_1:24460909-24460928 Msa0015110:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_1:24461173-24461192 Msa0015110:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_1:24461174-24461193 Msa0015110:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_1:24461180-24461199 Msa0015110:CDS 50.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_1:24459726-24459745 Msa0015110:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_1:24459903-24459922 Msa0015110:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_1:24460834-24460853 Msa0015110:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_1:24460853-24460872 Msa0015110:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_1:24460879-24460898 Msa0015110:intron 55.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_1:24459726-24459745 Msa0015110:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_1:24459903-24459922 Msa0015110:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_1:24460834-24460853 Msa0015110:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_1:24460853-24460872 Msa0015110:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_1:24460879-24460898 Msa0015110:intron 55.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_1:24460852-24460871 Msa0015110:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_1:24460873-24460892 None:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_1:24460852-24460871 Msa0015110:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_1:24460873-24460892 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 24459300 24461620 24459300 ID=Msa0015110;Name=Msa0015110
chr1_1 mRNA 24459300 24461620 24459300 ID=Msa0015110-mRNA-1;Parent=Msa0015110;Name=Msa0015110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=189|1|1|1|0.5|0.6|5|391|186
chr1_1 exon 24459300 24459682 24459300 ID=Msa0015110-mRNA-1:exon:8353;Parent=Msa0015110-mRNA-1
chr1_1 exon 24459907 24460097 24459907 ID=Msa0015110-mRNA-1:exon:8354;Parent=Msa0015110-mRNA-1
chr1_1 exon 24460410 24460509 24460410 ID=Msa0015110-mRNA-1:exon:8355;Parent=Msa0015110-mRNA-1
chr1_1 exon 24461134 24461306 24461134 ID=Msa0015110-mRNA-1:exon:8356;Parent=Msa0015110-mRNA-1
chr1_1 exon 24461327 24461620 24461327 ID=Msa0015110-mRNA-1:exon:8357;Parent=Msa0015110-mRNA-1
chr1_1 five_prime_UTR 24459300 24459488 24459300 ID=Msa0015110-mRNA-1:five_prime_utr;Parent=Msa0015110-mRNA-1
chr1_1 CDS 24459489 24459682 24459489 ID=Msa0015110-mRNA-1:cds;Parent=Msa0015110-mRNA-1
chr1_1 CDS 24459907 24460097 24459907 ID=Msa0015110-mRNA-1:cds;Parent=Msa0015110-mRNA-1
chr1_1 CDS 24460410 24460509 24460410 ID=Msa0015110-mRNA-1:cds;Parent=Msa0015110-mRNA-1
chr1_1 CDS 24461134 24461209 24461134 ID=Msa0015110-mRNA-1:cds;Parent=Msa0015110-mRNA-1
chr1_1 three_prime_UTR 24461210 24461306 24461210 ID=Msa0015110-mRNA-1:three_prime_utr;Parent=Msa0015110-mRNA-1
chr1_1 three_prime_UTR 24461327 24461620 24461327 ID=Msa0015110-mRNA-1:three_prime_utr;Parent=Msa0015110-mRNA-1
Gene Sequence

>Msa0015110

ATGGAATTCAAAGCAACTGAGCTTAGATTGGGATTACCAGGGACAGATGAAAAGGAGATGAAAACAATACATGGTAGTATTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATGATCAGCATGTGGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTAGGGTGGCCACCAATTAGGTCTTACAGGAAAAACACTTTGCAAGATGCTGAAGTTGGTGGGATCTATGTAAAAGTGAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTGAGGGTCTATGGAGGCTATCCAGAACTTCTCAAAGCTCTGGAAACCATGTTCAAATTGACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCAAGAGGTTTGGGTTGTGGTGTATGA
Protein sequence

>Msa0015110

MEFKATELRLGLPGTDEKEMKTIHGSIVKNNKRQLPQTSEESVSISKVSNDDQHVESSSAAPPAKAKIVGWPPIRSYRKNTLQDAEVGGIYVKVSMDGAPYLRKIDLRVYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLGCGV*