AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064230 MtrunA17_Chr1g0166011 97.849 186 4 0 1 186 1 186 5.29e-137 380
Msa0064230 MtrunA17_Chr1g0187961 73.626 182 34 3 1 182 11 178 2.00e-91 264
Msa0064230 MtrunA17_Chr1g0184801 65.625 192 58 3 1 184 12 203 9.97e-88 256
Msa0064230 MtrunA17_Chr7g0260621 63.402 194 60 4 1 184 11 203 3.20e-83 244
Msa0064230 MtrunA17_Chr6g0486121 42.358 229 86 6 1 183 15 243 2.92e-53 170
Msa0064230 MtrunA17_Chr2g0331411 48.705 193 66 5 17 182 128 314 1.26e-50 166
Msa0064230 MtrunA17_Chr1g0190711 43.590 234 75 8 1 183 15 242 1.43e-50 163
Msa0064230 MtrunA17_Chr1g0184791 44.828 232 69 9 1 183 13 234 1.88e-50 162
Msa0064230 MtrunA17_Chr1g0187921 44.144 222 81 7 1 183 8 225 5.11e-50 161
Msa0064230 MtrunA17_Chr5g0428141 54.667 150 44 4 58 183 187 336 1.30e-47 158
Msa0064230 MtrunA17_Chr8g0366881 38.745 271 78 7 1 183 67 337 1.75e-47 158
Msa0064230 MtrunA17_Chr5g0411501 36.861 274 82 8 1 183 51 324 2.10e-47 157
Msa0064230 MtrunA17_Chr7g0260641 40.435 230 89 6 1 183 11 239 5.87e-47 154
Msa0064230 MtrunA17_Chr8g0390281 40.310 258 78 10 1 182 24 281 7.78e-45 150
Msa0064230 MtrunA17_Chr4g0004181 45.304 181 78 5 3 183 8 167 5.99e-40 134
Msa0064230 MtrunA17_Chr2g0332141 56.989 93 31 2 91 174 8 100 4.30e-30 107
Msa0064230 MtrunA17_Chr8g0340731 30.620 258 106 7 1 185 10 267 1.26e-28 107
Msa0064230 MtrunA17_Chr2g0330951 30.800 250 108 7 2 186 13 262 1.06e-27 105
Msa0064230 MtrunA17_Chr1g0183251 33.146 178 58 4 66 183 81 257 2.91e-26 101
Msa0064230 MtrunA17_Chr4g0069561 38.095 126 77 1 55 179 59 184 1.50e-25 97.1
Msa0064230 MtrunA17_Chr7g0270851 41.748 103 56 2 83 184 62 161 9.49e-21 84.0
Msa0064230 MtrunA17_Chr1g0193861 34.395 157 91 5 22 175 23 170 1.21e-20 84.3
Msa0064230 MtrunA17_Chr3g0137601 31.496 127 67 3 68 179 89 210 3.42e-18 78.6
Msa0064230 MtrunA17_Chr1g0209181 37.313 134 69 4 53 175 39 168 4.30e-16 72.4
Msa0064230 MtrunA17_Chr4g0064131 31.148 122 63 3 68 176 93 206 1.03e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064230 AT1G04240.1 60.622 193 61 3 1 186 5 189 4.72e-80 236
Msa0064230 AT5G43700.1 61.905 189 53 4 1 185 11 184 2.49e-79 234
Msa0064230 AT1G04240.2 60.622 193 61 3 1 186 105 289 3.39e-79 238
Msa0064230 AT3G23030.1 60.109 183 51 3 1 182 9 170 1.22e-68 207
Msa0064230 AT3G23030.2 60.109 183 51 3 1 182 96 257 4.93e-68 208
Msa0064230 AT4G14560.1 60.335 179 50 3 1 179 7 164 9.29e-66 199
Msa0064230 AT3G04730.1 45.022 231 72 8 1 183 2 225 8.69e-55 174
Msa0064230 AT4G14550.2 44.344 221 81 6 1 183 1 217 2.68e-53 170
Msa0064230 AT4G14550.1 43.891 221 82 6 1 183 1 217 2.23e-52 167
Msa0064230 AT1G04250.1 45.327 214 84 7 1 183 7 218 4.45e-51 164
Msa0064230 AT4G29080.1 38.610 259 81 6 1 183 38 294 2.43e-50 164
Msa0064230 AT3G23050.1 43.860 228 81 7 1 183 6 231 1.25e-49 161
Msa0064230 AT2G22670.5 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0064230 AT2G22670.2 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0064230 AT2G22670.3 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0064230 AT2G22670.1 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0064230 AT2G22670.4 38.868 265 83 7 1 186 64 328 8.34e-48 159
Msa0064230 AT3G15540.1 46.486 185 92 4 3 183 8 189 6.49e-45 147
Msa0064230 AT5G65670.1 54.110 146 41 4 64 183 180 325 3.99e-44 149
Msa0064230 AT5G65670.2 54.110 146 41 4 64 183 180 325 4.06e-44 149
Msa0064230 AT1G52830.1 45.405 185 94 5 1 183 6 185 5.34e-42 139
Msa0064230 AT1G15580.1 46.111 180 70 7 3 181 10 163 4.02e-41 136
Msa0064230 AT4G14550.3 40.201 199 77 6 1 161 1 195 1.95e-39 133
Msa0064230 AT3G23050.2 40.097 207 77 7 1 162 6 210 2.93e-36 125
Msa0064230 AT2G33310.3 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0064230 AT2G33310.1 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0064230 AT3G16500.1 31.878 229 105 7 4 184 36 261 3.47e-30 111
Msa0064230 AT2G33310.2 37.572 173 68 4 52 184 61 233 6.43e-30 110
Msa0064230 AT3G16500.2 31.718 227 106 7 4 184 36 259 7.38e-30 110
Msa0064230 AT1G04550.2 39.080 174 62 5 53 183 52 224 2.12e-29 108
Msa0064230 AT4G28640.3 38.182 165 64 5 57 183 78 242 1.68e-27 104
Msa0064230 AT4G28640.1 38.037 163 63 5 57 181 78 240 3.79e-27 103
Msa0064230 AT4G28640.2 38.037 163 63 5 57 181 78 240 2.04e-26 102
Msa0064230 AT3G17600.1 38.514 148 70 5 36 175 20 154 8.08e-26 97.4
Msa0064230 AT5G25890.1 34.715 193 88 7 2 183 3 168 1.05e-25 97.8
Msa0064230 AT4G14550.4 38.065 155 66 5 1 129 1 151 1.29e-24 95.1
Msa0064230 AT1G51950.1 30.942 223 98 6 2 178 38 250 1.52e-24 97.1
Msa0064230 AT1G04100.1 37.952 166 52 4 69 183 95 260 2.18e-24 96.3
Msa0064230 AT3G62100.1 47.191 89 47 0 87 175 80 168 1.09e-22 89.7
Msa0064230 AT2G46990.1 45.055 91 50 0 87 177 82 172 1.10e-22 89.7
Msa0064230 AT3G23050.3 38.415 164 66 6 1 131 6 167 2.27e-22 89.0
Msa0064230 AT2G46990.2 47.368 76 40 0 87 162 82 157 1.61e-17 75.9
Msa0064230 AT3G62100.2 47.368 76 40 0 87 162 80 155 4.93e-17 74.7
Msa0064230 AT4G32280.2 40.698 86 46 2 90 175 118 198 5.79e-15 70.5
Msa0064230 AT4G32280.1 40.698 86 46 2 90 175 160 240 1.84e-14 69.7
Msa0064230 AT1G80390.1 35.115 131 55 4 2 125 15 122 2.83e-14 66.6
Msa0064230 AT1G15050.2 39.326 89 53 1 91 179 62 149 7.82e-12 60.8
Msa0064230 AT1G15050.1 39.326 89 53 1 91 179 94 181 1.44e-11 60.8
Msa0064230 AT2G46530.2 37.363 91 51 2 92 182 406 490 9.61e-11 60.1
Msa0064230 AT2G46530.1 37.363 91 51 2 92 182 493 577 9.73e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAGTGACTATATATTT+TGG 0.161323 1_2:+25241660 Msa0064230:five_prime_UTR
CTTTCAATTGCTGGAGCTAA+TGG 0.222205 1_2:+25243500 Msa0064230:three_prime_UTR
TTCTGAAAGAGAGGGTTATA+AGG 0.253325 1_2:+25242641 Msa0064230:CDS
AGCAACTTTGTATACTTATA+CGG 0.270093 1_2:+25243709 Msa0064230:three_prime_UTR
AGAATCTGTTTCAATTTCTA+AGG 0.274640 1_2:+25241832 Msa0064230:CDS
TCCAGAGCTTTGAGAAGTTC+TGG 0.290261 1_2:-25242276 None:intergenic
GGCACAGAAGCAAGAGGTTT+GGG 0.299475 1_2:+25243398 Msa0064230:CDS
AAAGTCAATCTTTCAATTGC+TGG 0.315268 1_2:+25243491 Msa0064230:three_prime_UTR
CCACCATGCCAATCTTGATT+TGG 0.337114 1_2:+25243544 Msa0064230:intron
AAGATTGACTTGAGGGTCTA+TGG 0.339850 1_2:+25242246 Msa0064230:CDS
CCCTCAAGTCAATCTTTCTA+AGG 0.345671 1_2:-25242239 None:intergenic
CAAAGCAACTGAGCTTAGAT+TGG 0.355831 1_2:+25241721 Msa0064230:CDS
GGCCACCAATTAGGTCTTAC+AGG 0.362405 1_2:+25242148 Msa0064230:CDS
CCTTAGAAAGATTGACTTGA+GGG 0.383287 1_2:+25242239 Msa0064230:CDS
TAGTAGGGTGGCCACCAATT+AGG 0.390633 1_2:+25242139 Msa0064230:CDS
TCTTGATTTGGAAGGGAAGA+TGG 0.411600 1_2:+25243556 Msa0064230:three_prime_UTR
AGGCACAGAAGCAAGAGGTT+TGG 0.421102 1_2:+25243397 Msa0064230:CDS
CTTCCCTTCCAAATCAAGAT+TGG 0.427307 1_2:-25243552 None:intergenic
TTGATTAAAACTTACTTGGC+AGG 0.428702 1_2:-25241899 None:intergenic
GAAGCAAGAGGTTTGGGTTG+TGG 0.428884 1_2:+25243404 Msa0064230:CDS
GTCACCATCCTTGTCTTCAT+AGG 0.428945 1_2:-25242682 None:intergenic
TATTGCAGGGCAAAGATAGT+AGG 0.441299 1_2:+25242123 Msa0064230:intron
TCCAGAACTTCTCAAAGCTC+TGG 0.452884 1_2:+25242275 Msa0064230:CDS
CCATCCTTGTCTTCATAGGT+TGG 0.460968 1_2:-25242678 None:intergenic
AAAGCAACTGAGCTTAGATT+GGG 0.468227 1_2:+25241722 Msa0064230:CDS
ACAGATTCTTCAGAAGTTTG+AGG 0.488351 1_2:-25241818 None:intergenic
AAGTCAATCTTTCTAAGGTA+AGG 0.499111 1_2:-25242234 None:intergenic
CATGCCAATCTTGATTTGGA+AGG 0.508214 1_2:+25243548 Msa0064230:intron
GAGCTTAGATTGGGATTACC+AGG 0.513920 1_2:+25241731 Msa0064230:CDS
TATGTAAAAGTGAGCATGGA+TGG 0.517094 1_2:+25242207 Msa0064230:CDS
TTCCTGTAAGACCTAATTGG+TGG 0.520095 1_2:-25242150 None:intergenic
TCTGAAAGAGAGGGTTATAA+GGG 0.521294 1_2:+25242642 Msa0064230:CDS
ATTACCAGGGACAGATGAAA+AGG 0.535679 1_2:+25241745 Msa0064230:CDS
TAAAACTTACTTGGCAGGAG+GGG 0.540132 1_2:-25241894 None:intergenic
GATGGTGACTGGATGCTAGT+TGG 0.551132 1_2:+25242696 Msa0064230:CDS
AATTAGAATTAGAAGAGTCA+TGG 0.559360 1_2:+25243732 Msa0064230:three_prime_UTR
AGGTGAGTATTCTGAAAGAG+AGG 0.559449 1_2:+25242632 Msa0064230:intron
TGTAACAATTGTGTGAAAGT+AGG 0.559942 1_2:-25241571 None:intergenic
TGCTAGTTGGAGATGTTCCA+TGG 0.562736 1_2:+25242709 Msa0064230:CDS
ATGCCAATCTTGATTTGGAA+GGG 0.567262 1_2:+25243549 Msa0064230:intron
ACCTATGGTCAATTTGAACA+TGG 0.570995 1_2:-25242301 None:intergenic
ATTGCAGGGCAAAGATAGTA+GGG 0.580888 1_2:+25242124 Msa0064230:intron
TTGCAAGATGCTGAAGTTGG+TGG 0.588995 1_2:+25242180 Msa0064230:CDS
GATCTATGTAAAAGTGAGCA+TGG 0.590257 1_2:+25242203 Msa0064230:CDS
ACCATGTTCAAATTGACCAT+AGG 0.591335 1_2:+25242300 Msa0064230:CDS
ACTTTGCAAGATGCTGAAGT+TGG 0.595544 1_2:+25242177 Msa0064230:CDS
ATTAAAACTTACTTGGCAGG+AGG 0.597037 1_2:-25241896 None:intergenic
ATGAAGACAAGGATGGTGAC+TGG 0.608145 1_2:+25242685 Msa0064230:CDS
TTAAAACTTACTTGGCAGGA+GGG 0.608705 1_2:-25241895 None:intergenic
ATGTTATTGAAAATGTTCAG+TGG 0.608738 1_2:-25243667 None:intergenic
GGAGAGAGAACTTACTCCCA+TGG 0.609032 1_2:-25242726 None:intergenic
TGCAAGATGCTGAAGTTGGT+GGG 0.610809 1_2:+25242181 Msa0064230:CDS
ACCTTAGAAAGATTGACTTG+AGG 0.615450 1_2:+25242238 Msa0064230:CDS
GGTGAGTATTCTGAAAGAGA+GGG 0.617046 1_2:+25242633 Msa0064230:intron
GCTAGTTGGAGATGTTCCAT+GGG 0.627077 1_2:+25242710 Msa0064230:CDS
AAGGAGATGAAAACAATACA+TGG 0.630474 1_2:+25241764 Msa0064230:CDS
AAAAGACTAAGAATCATGAA+AGG 0.643848 1_2:+25243377 Msa0064230:CDS
TGCACCAACCTATGAAGACA+AGG 0.644295 1_2:+25242674 Msa0064230:CDS
TTCAAATGATGATCAGCATG+TGG 0.651916 1_2:+25241856 Msa0064230:CDS
ATGAAAGGCACAGAAGCAAG+AGG 0.656651 1_2:+25243392 Msa0064230:CDS
AGCTTAGATTGGGATTACCA+GGG 0.671776 1_2:+25241732 Msa0064230:CDS
GTGTGAAAGTAGGAAATGCA+AGG 0.671895 1_2:-25241561 None:intergenic
CCAACCTATGAAGACAAGGA+TGG 0.673846 1_2:+25242678 Msa0064230:CDS
ATTGACTTGAGGGTCTATGG+AGG 0.675898 1_2:+25242249 Msa0064230:CDS
GCAGGGCAAAGATAGTAGGG+TGG 0.730499 1_2:+25242127 Msa0064230:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_2:25242335-25242354 Msa0064230:intron 10.0%
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_2:25242335-25242354 Msa0064230:intron 10.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_2:25241660-25241679 Msa0064230:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_2:25243015-25243034 Msa0064230:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_2:25243202-25243221 Msa0064230:intron 15.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_2:25241660-25241679 Msa0064230:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_2:25243015-25243034 Msa0064230:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_2:25243202-25243221 Msa0064230:intron 15.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_2:25241655-25241674 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_2:25241674-25241693 Msa0064230:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_2:25241675-25241694 Msa0064230:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_2:25242481-25242500 Msa0064230:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_2:25242750-25242769 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_2:25242751-25242770 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_2:25242860-25242879 Msa0064230:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_2:25243294-25243313 None:intergenic 20.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_2:25241655-25241674 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_2:25241674-25241693 Msa0064230:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_2:25241675-25241694 Msa0064230:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_2:25242481-25242500 Msa0064230:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_2:25242750-25242769 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_2:25242751-25242770 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_2:25242860-25242879 Msa0064230:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_2:25243294-25243313 None:intergenic 20.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_2:25241602-25241621 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_2:25241601-25241620 Msa0064230:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_2:25241832-25241851 Msa0064230:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_2:25241906-25241925 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_2:25241904-25241923 Msa0064230:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_2:25241931-25241950 Msa0064230:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_2:25242062-25242081 Msa0064230:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_2:25242109-25242128 Msa0064230:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_2:25242110-25242129 Msa0064230:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_2:25242319-25242338 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_2:25242851-25242870 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_2:25243377-25243396 Msa0064230:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_2:25243454-25243473 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_2:25243460-25243479 Msa0064230:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_2:25243595-25243614 Msa0064230:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_2:25243670-25243689 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_2:25243709-25243728 Msa0064230:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_2:25243732-25243751 Msa0064230:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_2:25243789-25243808 Msa0064230:three_prime_UTR 25.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_2:25241602-25241621 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_2:25241601-25241620 Msa0064230:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_2:25241832-25241851 Msa0064230:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_2:25241906-25241925 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_2:25241904-25241923 Msa0064230:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_2:25241931-25241950 Msa0064230:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_2:25242062-25242081 Msa0064230:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_2:25242109-25242128 Msa0064230:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_2:25242110-25242129 Msa0064230:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_2:25242319-25242338 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_2:25242851-25242870 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_2:25243377-25243396 Msa0064230:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_2:25243454-25243473 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_2:25243460-25243479 Msa0064230:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_2:25243595-25243614 Msa0064230:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_2:25243670-25243689 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_2:25243709-25243728 Msa0064230:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_2:25243732-25243751 Msa0064230:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_2:25243789-25243808 Msa0064230:three_prime_UTR 25.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_2:25241550-25241569 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_2:25241574-25241593 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_2:25241687-25241706 Msa0064230:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_2:25241764-25241783 Msa0064230:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_2:25241902-25241921 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_2:25242156-25242175 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_2:25242237-25242256 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_2:25242365-25242384 Msa0064230:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_2:25242366-25242385 Msa0064230:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_2:25242547-25242566 Msa0064230:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_2:25242612-25242631 Msa0064230:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_2:25242896-25242915 Msa0064230:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_2:25242902-25242921 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_2:25242941-25242960 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_2:25243240-25243259 Msa0064230:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_2:25243271-25243290 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_2:25243468-25243487 Msa0064230:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_2:25243491-25243510 Msa0064230:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_2:25243514-25243533 Msa0064230:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_2:25243615-25243634 Msa0064230:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_2:25243616-25243635 Msa0064230:three_prime_UTR 30.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_2:25241550-25241569 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_2:25241574-25241593 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_2:25241687-25241706 Msa0064230:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_2:25241764-25241783 Msa0064230:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_2:25241902-25241921 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_2:25242156-25242175 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_2:25242237-25242256 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_2:25242365-25242384 Msa0064230:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_2:25242366-25242385 Msa0064230:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_2:25242547-25242566 Msa0064230:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_2:25242612-25242631 Msa0064230:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_2:25242896-25242915 Msa0064230:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_2:25242902-25242921 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_2:25242941-25242960 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_2:25243240-25243259 Msa0064230:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_2:25243271-25243290 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_2:25243468-25243487 Msa0064230:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_2:25243491-25243510 Msa0064230:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_2:25243514-25243533 Msa0064230:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_2:25243615-25243634 Msa0064230:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_2:25243616-25243635 Msa0064230:three_prime_UTR 30.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_2:25241694-25241713 Msa0064230:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_2:25241722-25241741 Msa0064230:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_2:25241821-25241840 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_2:25241856-25241875 Msa0064230:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_2:25241898-25241917 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_2:25241899-25241918 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_2:25242043-25242062 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_2:25242203-25242222 Msa0064230:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_2:25242207-25242226 Msa0064230:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_2:25242238-25242257 Msa0064230:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_2:25242239-25242258 Msa0064230:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_2:25242300-25242319 Msa0064230:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_2:25242304-25242323 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_2:25242423-25242442 Msa0064230:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_2:25242641-25242660 Msa0064230:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_2:25242642-25242661 Msa0064230:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_2:25242792-25242811 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_2:25242972-25242991 Msa0064230:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_2:25243130-25243149 Msa0064230:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_2:25243266-25243285 Msa0064230:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_2:25243375-25243394 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_2:25243549-25243568 Msa0064230:intron 35.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_2:25241694-25241713 Msa0064230:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_2:25241722-25241741 Msa0064230:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_2:25241821-25241840 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_2:25241856-25241875 Msa0064230:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_2:25241898-25241917 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_2:25241899-25241918 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_2:25242043-25242062 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_2:25242203-25242222 Msa0064230:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_2:25242207-25242226 Msa0064230:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_2:25242238-25242257 Msa0064230:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_2:25242239-25242258 Msa0064230:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_2:25242300-25242319 Msa0064230:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_2:25242304-25242323 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_2:25242423-25242442 Msa0064230:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_2:25242641-25242660 Msa0064230:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_2:25242642-25242661 Msa0064230:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_2:25242792-25242811 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_2:25242972-25242991 Msa0064230:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_2:25243130-25243149 Msa0064230:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_2:25243266-25243285 Msa0064230:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_2:25243375-25243394 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_2:25243549-25243568 Msa0064230:intron 35.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_2:25241564-25241583 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_2:25241721-25241740 Msa0064230:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_2:25241732-25241751 Msa0064230:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_2:25241745-25241764 Msa0064230:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_2:25241897-25241916 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_2:25241958-25241977 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_2:25241958-25241977 Msa0064230:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_2:25242123-25242142 Msa0064230:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_2:25242124-25242143 Msa0064230:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_2:25242153-25242172 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_2:25242177-25242196 Msa0064230:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_2:25242242-25242261 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_2:25242246-25242265 Msa0064230:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_2:25242632-25242651 Msa0064230:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_2:25242633-25242652 Msa0064230:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_2:25242793-25242812 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_2:25242794-25242813 Msa0064230:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_2:25242802-25242821 Msa0064230:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_2:25242807-25242826 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_2:25242824-25242843 Msa0064230:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_2:25242963-25242982 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_2:25242976-25242995 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_2:25243129-25243148 Msa0064230:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_2:25243500-25243519 Msa0064230:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_2:25243550-25243569 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_2:25243548-25243567 Msa0064230:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_2:25243555-25243574 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_2:25243556-25243575 Msa0064230:three_prime_UTR 40.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_2:25241564-25241583 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_2:25241721-25241740 Msa0064230:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_2:25241732-25241751 Msa0064230:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_2:25241745-25241764 Msa0064230:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_2:25241897-25241916 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_2:25241958-25241977 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_2:25241958-25241977 Msa0064230:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_2:25242123-25242142 Msa0064230:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_2:25242124-25242143 Msa0064230:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_2:25242153-25242172 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_2:25242177-25242196 Msa0064230:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_2:25242242-25242261 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_2:25242246-25242265 Msa0064230:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_2:25242632-25242651 Msa0064230:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_2:25242633-25242652 Msa0064230:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_2:25242793-25242812 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_2:25242794-25242813 Msa0064230:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_2:25242802-25242821 Msa0064230:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_2:25242807-25242826 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_2:25242824-25242843 Msa0064230:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_2:25242963-25242982 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_2:25242976-25242995 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_2:25243129-25243148 Msa0064230:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_2:25243500-25243519 Msa0064230:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_2:25243550-25243569 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_2:25243548-25243567 Msa0064230:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_2:25243555-25243574 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_2:25243556-25243575 Msa0064230:three_prime_UTR 40.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_2:25241731-25241750 Msa0064230:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_2:25241752-25241771 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_2:25241959-25241978 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_2:25242016-25242035 Msa0064230:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_2:25242180-25242199 Msa0064230:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_2:25242181-25242200 Msa0064230:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_2:25242249-25242268 Msa0064230:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_2:25242275-25242294 Msa0064230:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_2:25242279-25242298 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_2:25242674-25242693 Msa0064230:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_2:25242681-25242700 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_2:25242678-25242697 Msa0064230:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_2:25242685-25242704 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_2:25242685-25242704 Msa0064230:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_2:25242709-25242728 Msa0064230:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_2:25242710-25242729 Msa0064230:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_2:25243064-25243083 Msa0064230:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_2:25243069-25243088 Msa0064230:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_2:25243070-25243089 Msa0064230:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_2:25243114-25243133 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_2:25243138-25243157 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_2:25243139-25243158 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_2:25243392-25243411 Msa0064230:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_2:25243547-25243566 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_2:25243544-25243563 Msa0064230:intron 45.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_2:25241731-25241750 Msa0064230:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_2:25241752-25241771 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_2:25241959-25241978 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_2:25242016-25242035 Msa0064230:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_2:25242180-25242199 Msa0064230:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_2:25242181-25242200 Msa0064230:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_2:25242249-25242268 Msa0064230:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_2:25242275-25242294 Msa0064230:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_2:25242279-25242298 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_2:25242674-25242693 Msa0064230:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_2:25242681-25242700 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_2:25242678-25242697 Msa0064230:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_2:25242685-25242704 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_2:25242685-25242704 Msa0064230:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_2:25242709-25242728 Msa0064230:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_2:25242710-25242729 Msa0064230:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_2:25243064-25243083 Msa0064230:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_2:25243069-25243088 Msa0064230:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_2:25243070-25243089 Msa0064230:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_2:25243114-25243133 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_2:25243138-25243157 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_2:25243139-25243158 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_2:25243392-25243411 Msa0064230:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_2:25243547-25243566 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_2:25243544-25243563 Msa0064230:intron 45.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_2:25242017-25242036 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_2:25242015-25242034 Msa0064230:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_2:25242032-25242051 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_2:25242139-25242158 Msa0064230:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_2:25242148-25242167 Msa0064230:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_2:25242696-25242715 Msa0064230:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_2:25242729-25242748 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_2:25243045-25243064 Msa0064230:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_2:25243046-25243065 Msa0064230:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_2:25243055-25243074 Msa0064230:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_2:25243062-25243081 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_2:25243063-25243082 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_2:25243111-25243130 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_2:25243133-25243152 Msa0064230:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_2:25243397-25243416 Msa0064230:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_2:25243398-25243417 Msa0064230:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_2:25243404-25243423 Msa0064230:CDS 50.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_2:25242017-25242036 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_2:25242015-25242034 Msa0064230:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_2:25242032-25242051 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_2:25242139-25242158 Msa0064230:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_2:25242148-25242167 Msa0064230:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_2:25242696-25242715 Msa0064230:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_2:25242729-25242748 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_2:25243045-25243064 Msa0064230:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_2:25243046-25243065 Msa0064230:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_2:25243055-25243074 Msa0064230:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_2:25243062-25243081 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_2:25243063-25243082 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_2:25243111-25243130 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_2:25243133-25243152 Msa0064230:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_2:25243397-25243416 Msa0064230:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_2:25243398-25243417 Msa0064230:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_2:25243404-25243423 Msa0064230:CDS 50.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_2:25241950-25241969 Msa0064230:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_2:25242127-25242146 Msa0064230:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_2:25243058-25243077 Msa0064230:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_2:25243077-25243096 Msa0064230:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_2:25243103-25243122 Msa0064230:intron 55.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_2:25241950-25241969 Msa0064230:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_2:25242127-25242146 Msa0064230:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_2:25243058-25243077 Msa0064230:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_2:25243077-25243096 Msa0064230:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_2:25243103-25243122 Msa0064230:intron 55.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_2:25243076-25243095 Msa0064230:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_2:25243097-25243116 None:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_2:25243076-25243095 Msa0064230:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_2:25243097-25243116 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25241523 25243844 25241523 ID=Msa0064230;Name=Msa0064230
chr1_2 mRNA 25241523 25243844 25241523 ID=Msa0064230-mRNA-1;Parent=Msa0064230;Name=Msa0064230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|0.5|0.6|5|391|186
chr1_2 exon 25241523 25241906 25241523 ID=Msa0064230-mRNA-1:exon:9001;Parent=Msa0064230-mRNA-1
chr1_2 exon 25242131 25242321 25242131 ID=Msa0064230-mRNA-1:exon:9002;Parent=Msa0064230-mRNA-1
chr1_2 exon 25242634 25242733 25242634 ID=Msa0064230-mRNA-1:exon:9003;Parent=Msa0064230-mRNA-1
chr1_2 exon 25243358 25243530 25243358 ID=Msa0064230-mRNA-1:exon:9004;Parent=Msa0064230-mRNA-1
chr1_2 exon 25243551 25243844 25243551 ID=Msa0064230-mRNA-1:exon:9005;Parent=Msa0064230-mRNA-1
chr1_2 five_prime_UTR 25241523 25241712 25241523 ID=Msa0064230-mRNA-1:five_prime_utr;Parent=Msa0064230-mRNA-1
chr1_2 CDS 25241713 25241906 25241713 ID=Msa0064230-mRNA-1:cds;Parent=Msa0064230-mRNA-1
chr1_2 CDS 25242131 25242321 25242131 ID=Msa0064230-mRNA-1:cds;Parent=Msa0064230-mRNA-1
chr1_2 CDS 25242634 25242733 25242634 ID=Msa0064230-mRNA-1:cds;Parent=Msa0064230-mRNA-1
chr1_2 CDS 25243358 25243433 25243358 ID=Msa0064230-mRNA-1:cds;Parent=Msa0064230-mRNA-1
chr1_2 three_prime_UTR 25243434 25243530 25243434 ID=Msa0064230-mRNA-1:three_prime_utr;Parent=Msa0064230-mRNA-1
chr1_2 three_prime_UTR 25243551 25243844 25243551 ID=Msa0064230-mRNA-1:three_prime_utr;Parent=Msa0064230-mRNA-1
Gene Sequence

>Msa0064230

ATGGAATTCAAAGCAACTGAGCTTAGATTGGGATTACCAGGGACAGATGAAAAGGAGATGAAAACAATACATGGTAGTATTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATGATCAGCATGTGGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTAGGGTGGCCACCAATTAGGTCTTACAGGAAAAACACTTTGCAAGATGCTGAAGTTGGTGGGATCTATGTAAAAGTGAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTGAGGGTCTATGGAGGCTATCCAGAACTTCTCAAAGCTCTGGAAACCATGTTCAAATTGACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCAAGAGGTTTGGGTTGTGGTGTATGA
Protein sequence

>Msa0064230

MEFKATELRLGLPGTDEKEMKTIHGSIVKNNKRQLPQTSEESVSISKVSNDDQHVESSSAAPPAKAKIVGWPPIRSYRKNTLQDAEVGGIYVKVSMDGAPYLRKIDLRVYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLGCGV*