AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064280 MtrunA17_Chr1g0166011 97.849 186 4 0 1 186 1 186 5.29e-137 380
Msa0064280 MtrunA17_Chr1g0187961 73.626 182 34 3 1 182 11 178 2.00e-91 264
Msa0064280 MtrunA17_Chr1g0184801 65.625 192 58 3 1 184 12 203 9.97e-88 256
Msa0064280 MtrunA17_Chr7g0260621 63.402 194 60 4 1 184 11 203 3.20e-83 244
Msa0064280 MtrunA17_Chr6g0486121 42.358 229 86 6 1 183 15 243 2.92e-53 170
Msa0064280 MtrunA17_Chr2g0331411 48.705 193 66 5 17 182 128 314 1.26e-50 166
Msa0064280 MtrunA17_Chr1g0190711 43.590 234 75 8 1 183 15 242 1.43e-50 163
Msa0064280 MtrunA17_Chr1g0184791 44.828 232 69 9 1 183 13 234 1.88e-50 162
Msa0064280 MtrunA17_Chr1g0187921 44.144 222 81 7 1 183 8 225 5.11e-50 161
Msa0064280 MtrunA17_Chr5g0428141 54.667 150 44 4 58 183 187 336 1.30e-47 158
Msa0064280 MtrunA17_Chr8g0366881 38.745 271 78 7 1 183 67 337 1.75e-47 158
Msa0064280 MtrunA17_Chr5g0411501 36.861 274 82 8 1 183 51 324 2.10e-47 157
Msa0064280 MtrunA17_Chr7g0260641 40.435 230 89 6 1 183 11 239 5.87e-47 154
Msa0064280 MtrunA17_Chr8g0390281 40.310 258 78 10 1 182 24 281 7.78e-45 150
Msa0064280 MtrunA17_Chr4g0004181 45.304 181 78 5 3 183 8 167 5.99e-40 134
Msa0064280 MtrunA17_Chr2g0332141 56.989 93 31 2 91 174 8 100 4.30e-30 107
Msa0064280 MtrunA17_Chr8g0340731 30.620 258 106 7 1 185 10 267 1.26e-28 107
Msa0064280 MtrunA17_Chr2g0330951 30.800 250 108 7 2 186 13 262 1.06e-27 105
Msa0064280 MtrunA17_Chr1g0183251 33.146 178 58 4 66 183 81 257 2.91e-26 101
Msa0064280 MtrunA17_Chr4g0069561 38.095 126 77 1 55 179 59 184 1.50e-25 97.1
Msa0064280 MtrunA17_Chr7g0270851 41.748 103 56 2 83 184 62 161 9.49e-21 84.0
Msa0064280 MtrunA17_Chr1g0193861 34.395 157 91 5 22 175 23 170 1.21e-20 84.3
Msa0064280 MtrunA17_Chr3g0137601 31.496 127 67 3 68 179 89 210 3.42e-18 78.6
Msa0064280 MtrunA17_Chr1g0209181 37.313 134 69 4 53 175 39 168 4.30e-16 72.4
Msa0064280 MtrunA17_Chr4g0064131 31.148 122 63 3 68 176 93 206 1.03e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064280 AT1G04240.1 60.622 193 61 3 1 186 5 189 4.72e-80 236
Msa0064280 AT5G43700.1 61.905 189 53 4 1 185 11 184 2.49e-79 234
Msa0064280 AT1G04240.2 60.622 193 61 3 1 186 105 289 3.39e-79 238
Msa0064280 AT3G23030.1 60.109 183 51 3 1 182 9 170 1.22e-68 207
Msa0064280 AT3G23030.2 60.109 183 51 3 1 182 96 257 4.93e-68 208
Msa0064280 AT4G14560.1 60.335 179 50 3 1 179 7 164 9.29e-66 199
Msa0064280 AT3G04730.1 45.022 231 72 8 1 183 2 225 8.69e-55 174
Msa0064280 AT4G14550.2 44.344 221 81 6 1 183 1 217 2.68e-53 170
Msa0064280 AT4G14550.1 43.891 221 82 6 1 183 1 217 2.23e-52 167
Msa0064280 AT1G04250.1 45.327 214 84 7 1 183 7 218 4.45e-51 164
Msa0064280 AT4G29080.1 38.610 259 81 6 1 183 38 294 2.43e-50 164
Msa0064280 AT3G23050.1 43.860 228 81 7 1 183 6 231 1.25e-49 161
Msa0064280 AT2G22670.5 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0064280 AT2G22670.2 39.313 262 80 7 1 183 47 308 2.47e-48 160
Msa0064280 AT2G22670.3 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0064280 AT2G22670.1 38.868 265 83 7 1 186 47 311 7.38e-48 159
Msa0064280 AT2G22670.4 38.868 265 83 7 1 186 64 328 8.34e-48 159
Msa0064280 AT3G15540.1 46.486 185 92 4 3 183 8 189 6.49e-45 147
Msa0064280 AT5G65670.1 54.110 146 41 4 64 183 180 325 3.99e-44 149
Msa0064280 AT5G65670.2 54.110 146 41 4 64 183 180 325 4.06e-44 149
Msa0064280 AT1G52830.1 45.405 185 94 5 1 183 6 185 5.34e-42 139
Msa0064280 AT1G15580.1 46.111 180 70 7 3 181 10 163 4.02e-41 136
Msa0064280 AT4G14550.3 40.201 199 77 6 1 161 1 195 1.95e-39 133
Msa0064280 AT3G23050.2 40.097 207 77 7 1 162 6 210 2.93e-36 125
Msa0064280 AT2G33310.3 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0064280 AT2G33310.1 37.705 183 71 5 42 184 53 232 9.02e-31 112
Msa0064280 AT3G16500.1 31.878 229 105 7 4 184 36 261 3.47e-30 111
Msa0064280 AT2G33310.2 37.572 173 68 4 52 184 61 233 6.43e-30 110
Msa0064280 AT3G16500.2 31.718 227 106 7 4 184 36 259 7.38e-30 110
Msa0064280 AT1G04550.2 39.080 174 62 5 53 183 52 224 2.12e-29 108
Msa0064280 AT4G28640.3 38.182 165 64 5 57 183 78 242 1.68e-27 104
Msa0064280 AT4G28640.1 38.037 163 63 5 57 181 78 240 3.79e-27 103
Msa0064280 AT4G28640.2 38.037 163 63 5 57 181 78 240 2.04e-26 102
Msa0064280 AT3G17600.1 38.514 148 70 5 36 175 20 154 8.08e-26 97.4
Msa0064280 AT5G25890.1 34.715 193 88 7 2 183 3 168 1.05e-25 97.8
Msa0064280 AT4G14550.4 38.065 155 66 5 1 129 1 151 1.29e-24 95.1
Msa0064280 AT1G51950.1 30.942 223 98 6 2 178 38 250 1.52e-24 97.1
Msa0064280 AT1G04100.1 37.952 166 52 4 69 183 95 260 2.18e-24 96.3
Msa0064280 AT3G62100.1 47.191 89 47 0 87 175 80 168 1.09e-22 89.7
Msa0064280 AT2G46990.1 45.055 91 50 0 87 177 82 172 1.10e-22 89.7
Msa0064280 AT3G23050.3 38.415 164 66 6 1 131 6 167 2.27e-22 89.0
Msa0064280 AT2G46990.2 47.368 76 40 0 87 162 82 157 1.61e-17 75.9
Msa0064280 AT3G62100.2 47.368 76 40 0 87 162 80 155 4.93e-17 74.7
Msa0064280 AT4G32280.2 40.698 86 46 2 90 175 118 198 5.79e-15 70.5
Msa0064280 AT4G32280.1 40.698 86 46 2 90 175 160 240 1.84e-14 69.7
Msa0064280 AT1G80390.1 35.115 131 55 4 2 125 15 122 2.83e-14 66.6
Msa0064280 AT1G15050.2 39.326 89 53 1 91 179 62 149 7.82e-12 60.8
Msa0064280 AT1G15050.1 39.326 89 53 1 91 179 94 181 1.44e-11 60.8
Msa0064280 AT2G46530.2 37.363 91 51 2 92 182 406 490 9.61e-11 60.1
Msa0064280 AT2G46530.1 37.363 91 51 2 92 182 493 577 9.73e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAGTGACTATATATTT+TGG 0.161323 1_2:+25291585 Msa0064280:five_prime_UTR
CTTTCAATTGCTGGAGCTAA+TGG 0.222205 1_2:+25293425 Msa0064280:three_prime_UTR
TTCTGAAAGAGAGGGTTATA+AGG 0.253325 1_2:+25292566 Msa0064280:CDS
AGCAACTTTGTATACTTATA+CGG 0.270093 1_2:+25293634 Msa0064280:three_prime_UTR
AGAATCTGTTTCAATTTCTA+AGG 0.274640 1_2:+25291757 Msa0064280:CDS
TCCAGAGCTTTGAGAAGTTC+TGG 0.290261 1_2:-25292201 None:intergenic
GGCACAGAAGCAAGAGGTTT+GGG 0.299475 1_2:+25293323 Msa0064280:CDS
AAAGTCAATCTTTCAATTGC+TGG 0.315268 1_2:+25293416 Msa0064280:three_prime_UTR
CCACCATGCCAATCTTGATT+TGG 0.337114 1_2:+25293469 Msa0064280:intron
AAGATTGACTTGAGGGTCTA+TGG 0.339850 1_2:+25292171 Msa0064280:CDS
CCCTCAAGTCAATCTTTCTA+AGG 0.345671 1_2:-25292164 None:intergenic
CAAAGCAACTGAGCTTAGAT+TGG 0.355831 1_2:+25291646 Msa0064280:CDS
GGCCACCAATTAGGTCTTAC+AGG 0.362405 1_2:+25292073 Msa0064280:CDS
CCTTAGAAAGATTGACTTGA+GGG 0.383287 1_2:+25292164 Msa0064280:CDS
TAGTAGGGTGGCCACCAATT+AGG 0.390633 1_2:+25292064 Msa0064280:CDS
TCTTGATTTGGAAGGGAAGA+TGG 0.411600 1_2:+25293481 Msa0064280:three_prime_UTR
AGGCACAGAAGCAAGAGGTT+TGG 0.421102 1_2:+25293322 Msa0064280:CDS
CTTCCCTTCCAAATCAAGAT+TGG 0.427307 1_2:-25293477 None:intergenic
TTGATTAAAACTTACTTGGC+AGG 0.428702 1_2:-25291824 None:intergenic
GAAGCAAGAGGTTTGGGTTG+TGG 0.428884 1_2:+25293329 Msa0064280:CDS
GTCACCATCCTTGTCTTCAT+AGG 0.428945 1_2:-25292607 None:intergenic
TATTGCAGGGCAAAGATAGT+AGG 0.441299 1_2:+25292048 Msa0064280:intron
TCCAGAACTTCTCAAAGCTC+TGG 0.452884 1_2:+25292200 Msa0064280:CDS
CCATCCTTGTCTTCATAGGT+TGG 0.460968 1_2:-25292603 None:intergenic
AAAGCAACTGAGCTTAGATT+GGG 0.468227 1_2:+25291647 Msa0064280:CDS
ACAGATTCTTCAGAAGTTTG+AGG 0.488351 1_2:-25291743 None:intergenic
AAGTCAATCTTTCTAAGGTA+AGG 0.499111 1_2:-25292159 None:intergenic
CATGCCAATCTTGATTTGGA+AGG 0.508214 1_2:+25293473 Msa0064280:intron
GAGCTTAGATTGGGATTACC+AGG 0.513920 1_2:+25291656 Msa0064280:CDS
TATGTAAAAGTGAGCATGGA+TGG 0.517094 1_2:+25292132 Msa0064280:CDS
TTCCTGTAAGACCTAATTGG+TGG 0.520095 1_2:-25292075 None:intergenic
TCTGAAAGAGAGGGTTATAA+GGG 0.521294 1_2:+25292567 Msa0064280:CDS
ATTACCAGGGACAGATGAAA+AGG 0.535679 1_2:+25291670 Msa0064280:CDS
TAAAACTTACTTGGCAGGAG+GGG 0.540132 1_2:-25291819 None:intergenic
GATGGTGACTGGATGCTAGT+TGG 0.551132 1_2:+25292621 Msa0064280:CDS
AATTAGAATTAGAAGAGTCA+TGG 0.559360 1_2:+25293657 Msa0064280:three_prime_UTR
AGGTGAGTATTCTGAAAGAG+AGG 0.559449 1_2:+25292557 Msa0064280:intron
TGTAACAATTGTGTGAAAGT+AGG 0.559942 1_2:-25291497 None:intergenic
TGCTAGTTGGAGATGTTCCA+TGG 0.562736 1_2:+25292634 Msa0064280:CDS
ATGCCAATCTTGATTTGGAA+GGG 0.567262 1_2:+25293474 Msa0064280:intron
ACCTATGGTCAATTTGAACA+TGG 0.570995 1_2:-25292226 None:intergenic
ATTGCAGGGCAAAGATAGTA+GGG 0.580888 1_2:+25292049 Msa0064280:intron
TTGCAAGATGCTGAAGTTGG+TGG 0.588995 1_2:+25292105 Msa0064280:CDS
GATCTATGTAAAAGTGAGCA+TGG 0.590257 1_2:+25292128 Msa0064280:CDS
ACCATGTTCAAATTGACCAT+AGG 0.591335 1_2:+25292225 Msa0064280:CDS
ACTTTGCAAGATGCTGAAGT+TGG 0.595544 1_2:+25292102 Msa0064280:CDS
ATTAAAACTTACTTGGCAGG+AGG 0.597037 1_2:-25291821 None:intergenic
ATGAAGACAAGGATGGTGAC+TGG 0.608145 1_2:+25292610 Msa0064280:CDS
TTAAAACTTACTTGGCAGGA+GGG 0.608705 1_2:-25291820 None:intergenic
ATGTTATTGAAAATGTTCAG+TGG 0.608738 1_2:-25293592 None:intergenic
GGAGAGAGAACTTACTCCCA+TGG 0.609032 1_2:-25292651 None:intergenic
TGCAAGATGCTGAAGTTGGT+GGG 0.610809 1_2:+25292106 Msa0064280:CDS
ACCTTAGAAAGATTGACTTG+AGG 0.615450 1_2:+25292163 Msa0064280:CDS
GGTGAGTATTCTGAAAGAGA+GGG 0.617046 1_2:+25292558 Msa0064280:intron
GCTAGTTGGAGATGTTCCAT+GGG 0.627077 1_2:+25292635 Msa0064280:CDS
AAGGAGATGAAAACAATACA+TGG 0.630474 1_2:+25291689 Msa0064280:CDS
AAAAGACTAAGAATCATGAA+AGG 0.643848 1_2:+25293302 Msa0064280:CDS
TGCACCAACCTATGAAGACA+AGG 0.644295 1_2:+25292599 Msa0064280:CDS
TTCAAATGATGATCAGCATG+TGG 0.651916 1_2:+25291781 Msa0064280:CDS
ATGAAAGGCACAGAAGCAAG+AGG 0.656651 1_2:+25293317 Msa0064280:CDS
AGCTTAGATTGGGATTACCA+GGG 0.671776 1_2:+25291657 Msa0064280:CDS
GTGTGAAAGTAGGAAATGCA+AGG 0.671895 1_2:-25291487 None:intergenic
CCAACCTATGAAGACAAGGA+TGG 0.673846 1_2:+25292603 Msa0064280:CDS
ATTGACTTGAGGGTCTATGG+AGG 0.675898 1_2:+25292174 Msa0064280:CDS
GCAGGGCAAAGATAGTAGGG+TGG 0.730499 1_2:+25292052 Msa0064280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_2:25292260-25292279 Msa0064280:intron 10.0%
!!! AAAATTTTGTTTTTTTGTTT+TGG + chr1_2:25292260-25292279 Msa0064280:intron 10.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_2:25291585-25291604 Msa0064280:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_2:25292940-25292959 Msa0064280:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_2:25293127-25293146 Msa0064280:intron 15.0%
!!! TTTATAGTGACTATATATTT+TGG + chr1_2:25291585-25291604 Msa0064280:five_prime_UTR 15.0%
!!! AGTTTGATTTTATTTTACTT+CGG + chr1_2:25292940-25292959 Msa0064280:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_2:25293127-25293146 Msa0064280:intron 15.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_2:25291580-25291599 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_2:25291599-25291618 Msa0064280:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_2:25291600-25291619 Msa0064280:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_2:25292406-25292425 Msa0064280:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_2:25292675-25292694 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_2:25292676-25292695 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_2:25292785-25292804 Msa0064280:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_2:25293219-25293238 None:intergenic 20.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_2:25291580-25291599 None:intergenic 20.0%
!!! ATATTTTGGAATTGAATTAG+TGG + chr1_2:25291599-25291618 Msa0064280:five_prime_UTR 20.0%
!!! TATTTTGGAATTGAATTAGT+GGG + chr1_2:25291600-25291619 Msa0064280:five_prime_UTR 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_2:25292406-25292425 Msa0064280:intron 20.0%
!! AGAATAAAGAAAACACATAA+GGG - chr1_2:25292675-25292694 None:intergenic 20.0%
!! AAGAATAAAGAAAACACATA+AGG - chr1_2:25292676-25292695 None:intergenic 20.0%
!!! GCTTATTTAAGTTTATCATT+TGG + chr1_2:25292785-25292804 Msa0064280:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_2:25293219-25293238 None:intergenic 20.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_2:25291528-25291547 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_2:25291527-25291546 Msa0064280:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_2:25291757-25291776 Msa0064280:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_2:25291831-25291850 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_2:25291829-25291848 Msa0064280:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_2:25291856-25291875 Msa0064280:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_2:25291987-25292006 Msa0064280:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_2:25292034-25292053 Msa0064280:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_2:25292035-25292054 Msa0064280:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_2:25292244-25292263 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_2:25292776-25292795 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_2:25293302-25293321 Msa0064280:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_2:25293379-25293398 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_2:25293385-25293404 Msa0064280:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_2:25293520-25293539 Msa0064280:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_2:25293595-25293614 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_2:25293634-25293653 Msa0064280:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_2:25293657-25293676 Msa0064280:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_2:25293714-25293733 Msa0064280:three_prime_UTR 25.0%
!!! TTCTTTTGAGATGTTAAAAG+AGG - chr1_2:25291528-25291547 None:intergenic 25.0%
!! TCTTTTAACATCTCAAAAGA+AGG + chr1_2:25291527-25291546 Msa0064280:five_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_2:25291757-25291776 Msa0064280:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_2:25291831-25291850 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_2:25291829-25291848 Msa0064280:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_2:25291856-25291875 Msa0064280:intron 25.0%
!!! CAAGAATTTTTTTGTTTGTG+TGG + chr1_2:25291987-25292006 Msa0064280:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_2:25292034-25292053 Msa0064280:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_2:25292035-25292054 Msa0064280:intron 25.0%
!! TTTTATCTCTATCTTACCTA+TGG - chr1_2:25292244-25292263 None:intergenic 25.0%
! CTTAAATAAGCTAATCGAAA+CGG - chr1_2:25292776-25292795 None:intergenic 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_2:25293302-25293321 Msa0064280:CDS 25.0%
!! TTTTTCTTGCATATAGTCAT+AGG - chr1_2:25293379-25293398 None:intergenic 25.0%
!! ATATGCAAGAAAAAGAGTTT+TGG + chr1_2:25293385-25293404 Msa0064280:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_2:25293520-25293539 Msa0064280:three_prime_UTR 25.0%
! ATGTTATTGAAAATGTTCAG+TGG - chr1_2:25293595-25293614 None:intergenic 25.0%
! AGCAACTTTGTATACTTATA+CGG + chr1_2:25293634-25293653 Msa0064280:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_2:25293657-25293676 Msa0064280:three_prime_UTR 25.0%
!!! TACGTAGTTATTTTTTTGAC+AGG + chr1_2:25293714-25293733 Msa0064280:three_prime_UTR 25.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_2:25291476-25291495 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_2:25291500-25291519 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_2:25291612-25291631 Msa0064280:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_2:25291689-25291708 Msa0064280:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_2:25291827-25291846 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_2:25292081-25292100 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_2:25292162-25292181 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_2:25292290-25292309 Msa0064280:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_2:25292291-25292310 Msa0064280:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_2:25292472-25292491 Msa0064280:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_2:25292537-25292556 Msa0064280:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_2:25292821-25292840 Msa0064280:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_2:25292827-25292846 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_2:25292866-25292885 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_2:25293165-25293184 Msa0064280:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_2:25293196-25293215 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_2:25293393-25293412 Msa0064280:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_2:25293416-25293435 Msa0064280:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_2:25293439-25293458 Msa0064280:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_2:25293540-25293559 Msa0064280:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_2:25293541-25293560 Msa0064280:three_prime_UTR 30.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_2:25291476-25291495 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_2:25291500-25291519 None:intergenic 30.0%
!!! GAATTAGTGGGTTTTACATA+AGG + chr1_2:25291612-25291631 Msa0064280:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_2:25291689-25291708 Msa0064280:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_2:25291827-25291846 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_2:25292081-25292100 None:intergenic 30.0%
!! AAGTCAATCTTTCTAAGGTA+AGG - chr1_2:25292162-25292181 None:intergenic 30.0%
TTTAAATTGCAATCGTGTCT+AGG + chr1_2:25292290-25292309 Msa0064280:intron 30.0%
TTAAATTGCAATCGTGTCTA+GGG + chr1_2:25292291-25292310 Msa0064280:intron 30.0%
!!! GACTAGTCTTGATTTTATTG+TGG + chr1_2:25292472-25292491 Msa0064280:intron 30.0%
!!! GAAATTGTGCTTTGTTTTTC+AGG + chr1_2:25292537-25292556 Msa0064280:intron 30.0%
! AAGCCTCTTTGAGAAAATTT+AGG + chr1_2:25292821-25292840 Msa0064280:intron 30.0%
! TGACCTAAATTTTCTCAAAG+AGG - chr1_2:25292827-25292846 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+AGG - chr1_2:25292866-25292885 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_2:25293165-25293184 Msa0064280:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_2:25293196-25293215 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_2:25293393-25293412 Msa0064280:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_2:25293416-25293435 Msa0064280:three_prime_UTR 30.0%
!!! AGCTAATGGATTTTGAATCA+AGG + chr1_2:25293439-25293458 Msa0064280:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_2:25293540-25293559 Msa0064280:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_2:25293541-25293560 Msa0064280:three_prime_UTR 30.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_2:25291619-25291638 Msa0064280:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_2:25291647-25291666 Msa0064280:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_2:25291746-25291765 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_2:25291781-25291800 Msa0064280:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_2:25291823-25291842 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_2:25291824-25291843 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_2:25291968-25291987 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_2:25292128-25292147 Msa0064280:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_2:25292132-25292151 Msa0064280:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_2:25292163-25292182 Msa0064280:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_2:25292164-25292183 Msa0064280:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_2:25292225-25292244 Msa0064280:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_2:25292229-25292248 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_2:25292348-25292367 Msa0064280:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_2:25292566-25292585 Msa0064280:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_2:25292567-25292586 Msa0064280:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_2:25292717-25292736 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_2:25292897-25292916 Msa0064280:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_2:25293055-25293074 Msa0064280:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_2:25293191-25293210 Msa0064280:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_2:25293300-25293319 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_2:25293474-25293493 Msa0064280:intron 35.0%
! TGGGTTTTACATAAGGAAGA+TGG + chr1_2:25291619-25291638 Msa0064280:exon 35.0%
AAAGCAACTGAGCTTAGATT+GGG + chr1_2:25291647-25291666 Msa0064280:CDS 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_2:25291746-25291765 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_2:25291781-25291800 Msa0064280:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_2:25291823-25291842 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_2:25291824-25291843 None:intergenic 35.0%
! GAATCTTTTGTCTCATCAAG+AGG - chr1_2:25291968-25291987 None:intergenic 35.0%
GATCTATGTAAAAGTGAGCA+TGG + chr1_2:25292128-25292147 Msa0064280:CDS 35.0%
TATGTAAAAGTGAGCATGGA+TGG + chr1_2:25292132-25292151 Msa0064280:CDS 35.0%
!! ACCTTAGAAAGATTGACTTG+AGG + chr1_2:25292163-25292182 Msa0064280:CDS 35.0%
!! CCTTAGAAAGATTGACTTGA+GGG + chr1_2:25292164-25292183 Msa0064280:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_2:25292225-25292244 Msa0064280:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_2:25292229-25292248 None:intergenic 35.0%
GACTGATGTAGTCTCAATTA+TGG + chr1_2:25292348-25292367 Msa0064280:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_2:25292566-25292585 Msa0064280:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_2:25292567-25292586 Msa0064280:CDS 35.0%
TACAGAGGATCTAAGTTCAT+GGG - chr1_2:25292717-25292736 None:intergenic 35.0%
TCCATGATAGTCGATGAAAA+TGG + chr1_2:25292897-25292916 Msa0064280:intron 35.0%
ATTGTCCCTGATGTCAATTT+GGG + chr1_2:25293055-25293074 Msa0064280:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_2:25293191-25293210 Msa0064280:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_2:25293300-25293319 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_2:25293474-25293493 Msa0064280:intron 35.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_2:25291490-25291509 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_2:25291646-25291665 Msa0064280:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_2:25291657-25291676 Msa0064280:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_2:25291670-25291689 Msa0064280:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_2:25291822-25291841 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_2:25291883-25291902 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_2:25291883-25291902 Msa0064280:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_2:25292048-25292067 Msa0064280:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_2:25292049-25292068 Msa0064280:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_2:25292078-25292097 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_2:25292102-25292121 Msa0064280:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_2:25292167-25292186 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_2:25292171-25292190 Msa0064280:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_2:25292557-25292576 Msa0064280:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_2:25292558-25292577 Msa0064280:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_2:25292718-25292737 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_2:25292719-25292738 Msa0064280:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_2:25292727-25292746 Msa0064280:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_2:25292732-25292751 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_2:25292749-25292768 Msa0064280:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_2:25292888-25292907 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_2:25292901-25292920 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_2:25293054-25293073 Msa0064280:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_2:25293425-25293444 Msa0064280:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_2:25293475-25293494 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_2:25293473-25293492 Msa0064280:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_2:25293480-25293499 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_2:25293481-25293500 Msa0064280:three_prime_UTR 40.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_2:25291490-25291509 None:intergenic 40.0%
CAAAGCAACTGAGCTTAGAT+TGG + chr1_2:25291646-25291665 Msa0064280:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_2:25291657-25291676 Msa0064280:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_2:25291670-25291689 Msa0064280:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_2:25291822-25291841 None:intergenic 40.0%
TACTACCATGCAGCTGTATA+GGG - chr1_2:25291883-25291902 None:intergenic 40.0%
TATACAGCTGCATGGTAGTA+CGG + chr1_2:25291883-25291902 Msa0064280:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_2:25292048-25292067 Msa0064280:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_2:25292049-25292068 Msa0064280:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_2:25292078-25292097 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_2:25292102-25292121 Msa0064280:CDS 40.0%
CCCTCAAGTCAATCTTTCTA+AGG - chr1_2:25292167-25292186 None:intergenic 40.0%
!! AAGATTGACTTGAGGGTCTA+TGG + chr1_2:25292171-25292190 Msa0064280:CDS 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_2:25292557-25292576 Msa0064280:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_2:25292558-25292577 Msa0064280:intron 40.0%
CTACAGAGGATCTAAGTTCA+TGG - chr1_2:25292718-25292737 None:intergenic 40.0%
GAACTTAGATCCTCTGTAGT+TGG + chr1_2:25292719-25292738 Msa0064280:intron 40.0%
!! ATCCTCTGTAGTTGGCTTTA+TGG + chr1_2:25292727-25292746 Msa0064280:intron 40.0%
TACCATAAAGCCAACTACAG+AGG - chr1_2:25292732-25292751 None:intergenic 40.0%
GTAGCAGATAGTTCGATTGT+TGG + chr1_2:25292749-25292768 Msa0064280:intron 40.0%
ACTATCATGGAAAACTGACG+AGG - chr1_2:25292888-25292907 None:intergenic 40.0%
!! GCCATTTTCATCGACTATCA+TGG - chr1_2:25292901-25292920 None:intergenic 40.0%
GATTGTCCCTGATGTCAATT+TGG + chr1_2:25293054-25293073 Msa0064280:intron 40.0%
CTTTCAATTGCTGGAGCTAA+TGG + chr1_2:25293425-25293444 Msa0064280:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_2:25293475-25293494 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_2:25293473-25293492 Msa0064280:intron 40.0%
CTTCCCTTCCAAATCAAGAT+TGG - chr1_2:25293480-25293499 None:intergenic 40.0%
!! TCTTGATTTGGAAGGGAAGA+TGG + chr1_2:25293481-25293500 Msa0064280:three_prime_UTR 40.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_2:25291656-25291675 Msa0064280:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_2:25291677-25291696 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_2:25291884-25291903 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_2:25291941-25291960 Msa0064280:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_2:25292105-25292124 Msa0064280:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_2:25292106-25292125 Msa0064280:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_2:25292174-25292193 Msa0064280:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_2:25292200-25292219 Msa0064280:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_2:25292204-25292223 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_2:25292599-25292618 Msa0064280:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_2:25292606-25292625 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_2:25292603-25292622 Msa0064280:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_2:25292610-25292629 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_2:25292610-25292629 Msa0064280:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_2:25292634-25292653 Msa0064280:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_2:25292635-25292654 Msa0064280:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_2:25292989-25293008 Msa0064280:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_2:25292994-25293013 Msa0064280:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_2:25292995-25293014 Msa0064280:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_2:25293039-25293058 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_2:25293063-25293082 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_2:25293064-25293083 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_2:25293317-25293336 Msa0064280:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_2:25293472-25293491 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_2:25293469-25293488 Msa0064280:intron 45.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_2:25291656-25291675 Msa0064280:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_2:25291677-25291696 None:intergenic 45.0%
GTACTACCATGCAGCTGTAT+AGG - chr1_2:25291884-25291903 None:intergenic 45.0%
ATACGTACTGCAACCGTTCA+GGG + chr1_2:25291941-25291960 Msa0064280:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_2:25292105-25292124 Msa0064280:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_2:25292106-25292125 Msa0064280:CDS 45.0%
!! ATTGACTTGAGGGTCTATGG+AGG + chr1_2:25292174-25292193 Msa0064280:CDS 45.0%
TCCAGAACTTCTCAAAGCTC+TGG + chr1_2:25292200-25292219 Msa0064280:CDS 45.0%
!! TCCAGAGCTTTGAGAAGTTC+TGG - chr1_2:25292204-25292223 None:intergenic 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_2:25292599-25292618 Msa0064280:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_2:25292606-25292625 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_2:25292603-25292622 Msa0064280:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_2:25292610-25292629 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_2:25292610-25292629 Msa0064280:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_2:25292634-25292653 Msa0064280:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_2:25292635-25292654 Msa0064280:CDS 45.0%
!! TTGGGTTGATCTGGTGGTAT+TGG + chr1_2:25292989-25293008 Msa0064280:intron 45.0%
!! TTGATCTGGTGGTATTGGCT+TGG + chr1_2:25292994-25293013 Msa0064280:intron 45.0%
!! TGATCTGGTGGTATTGGCTT+GGG + chr1_2:25292995-25293014 Msa0064280:intron 45.0%
CAATCGAACCTGAGACATTG+AGG - chr1_2:25293039-25293058 None:intergenic 45.0%
GTCCACCCAAATTGACATCA+GGG - chr1_2:25293063-25293082 None:intergenic 45.0%
AGTCCACCCAAATTGACATC+AGG - chr1_2:25293064-25293083 None:intergenic 45.0%
! ATGAAAGGCACAGAAGCAAG+AGG + chr1_2:25293317-25293336 Msa0064280:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_2:25293472-25293491 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_2:25293469-25293488 Msa0064280:intron 45.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_2:25291942-25291961 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_2:25291940-25291959 Msa0064280:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_2:25291957-25291976 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_2:25292064-25292083 Msa0064280:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_2:25292073-25292092 Msa0064280:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_2:25292621-25292640 Msa0064280:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_2:25292654-25292673 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_2:25292970-25292989 Msa0064280:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_2:25292971-25292990 Msa0064280:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_2:25292980-25292999 Msa0064280:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_2:25292987-25293006 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_2:25292988-25293007 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_2:25293036-25293055 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_2:25293058-25293077 Msa0064280:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_2:25293322-25293341 Msa0064280:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_2:25293323-25293342 Msa0064280:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_2:25293329-25293348 Msa0064280:CDS 50.0%
CTGAACGGTTGCAGTACGTA+TGG - chr1_2:25291942-25291961 None:intergenic 50.0%
CATACGTACTGCAACCGTTC+AGG + chr1_2:25291940-25291959 Msa0064280:intron 50.0%
CTCATCAAGAGGACCCTGAA+CGG - chr1_2:25291957-25291976 None:intergenic 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_2:25292064-25292083 Msa0064280:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_2:25292073-25292092 Msa0064280:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_2:25292621-25292640 Msa0064280:CDS 50.0%
GGAGAGAGAACTTACTCCCA+TGG - chr1_2:25292654-25292673 None:intergenic 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_2:25292970-25292989 Msa0064280:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_2:25292971-25292990 Msa0064280:intron 50.0%
!! CTAACCCACTTGGGTTGATC+TGG + chr1_2:25292980-25292999 Msa0064280:intron 50.0%
ACCACCAGATCAACCCAAGT+GGG - chr1_2:25292987-25293006 None:intergenic 50.0%
TACCACCAGATCAACCCAAG+TGG - chr1_2:25292988-25293007 None:intergenic 50.0%
TCGAACCTGAGACATTGAGG+AGG - chr1_2:25293036-25293055 None:intergenic 50.0%
GTCCCTGATGTCAATTTGGG+TGG + chr1_2:25293058-25293077 Msa0064280:intron 50.0%
AGGCACAGAAGCAAGAGGTT+TGG + chr1_2:25293322-25293341 Msa0064280:CDS 50.0%
GGCACAGAAGCAAGAGGTTT+GGG + chr1_2:25293323-25293342 Msa0064280:CDS 50.0%
!! GAAGCAAGAGGTTTGGGTTG+TGG + chr1_2:25293329-25293348 Msa0064280:CDS 50.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_2:25291875-25291894 Msa0064280:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_2:25292052-25292071 Msa0064280:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_2:25292983-25293002 Msa0064280:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_2:25293002-25293021 Msa0064280:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_2:25293028-25293047 Msa0064280:intron 55.0%
GTGGACCCTATACAGCTGCA+TGG + chr1_2:25291875-25291894 Msa0064280:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_2:25292052-25292071 Msa0064280:intron 55.0%
!! ACCCACTTGGGTTGATCTGG+TGG + chr1_2:25292983-25293002 Msa0064280:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr1_2:25293002-25293021 Msa0064280:intron 55.0%
GTGCTCCTCCTCAATGTCTC+AGG + chr1_2:25293028-25293047 Msa0064280:intron 55.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_2:25293001-25293020 Msa0064280:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_2:25293022-25293041 None:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr1_2:25293001-25293020 Msa0064280:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr1_2:25293022-25293041 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25291449 25293769 25291449 ID=Msa0064280;Name=Msa0064280
chr1_2 mRNA 25291449 25293769 25291449 ID=Msa0064280-mRNA-1;Parent=Msa0064280;Name=Msa0064280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=189|1|1|1|0.5|0.6|5|391|186
chr1_2 exon 25291449 25291831 25291449 ID=Msa0064280-mRNA-1:exon:9023;Parent=Msa0064280-mRNA-1
chr1_2 exon 25292056 25292246 25292056 ID=Msa0064280-mRNA-1:exon:9024;Parent=Msa0064280-mRNA-1
chr1_2 exon 25292559 25292658 25292559 ID=Msa0064280-mRNA-1:exon:9025;Parent=Msa0064280-mRNA-1
chr1_2 exon 25293283 25293455 25293283 ID=Msa0064280-mRNA-1:exon:9026;Parent=Msa0064280-mRNA-1
chr1_2 exon 25293476 25293769 25293476 ID=Msa0064280-mRNA-1:exon:9027;Parent=Msa0064280-mRNA-1
chr1_2 five_prime_UTR 25291449 25291637 25291449 ID=Msa0064280-mRNA-1:five_prime_utr;Parent=Msa0064280-mRNA-1
chr1_2 CDS 25291638 25291831 25291638 ID=Msa0064280-mRNA-1:cds;Parent=Msa0064280-mRNA-1
chr1_2 CDS 25292056 25292246 25292056 ID=Msa0064280-mRNA-1:cds;Parent=Msa0064280-mRNA-1
chr1_2 CDS 25292559 25292658 25292559 ID=Msa0064280-mRNA-1:cds;Parent=Msa0064280-mRNA-1
chr1_2 CDS 25293283 25293358 25293283 ID=Msa0064280-mRNA-1:cds;Parent=Msa0064280-mRNA-1
chr1_2 three_prime_UTR 25293359 25293455 25293359 ID=Msa0064280-mRNA-1:three_prime_utr;Parent=Msa0064280-mRNA-1
chr1_2 three_prime_UTR 25293476 25293769 25293476 ID=Msa0064280-mRNA-1:three_prime_utr;Parent=Msa0064280-mRNA-1
Gene Sequence

>Msa0064280

ATGGAATTCAAAGCAACTGAGCTTAGATTGGGATTACCAGGGACAGATGAAAAGGAGATGAAAACAATACATGGTAGTATTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATGATCAGCATGTGGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTAGGGTGGCCACCAATTAGGTCTTACAGGAAAAACACTTTGCAAGATGCTGAAGTTGGTGGGATCTATGTAAAAGTGAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTGAGGGTCTATGGAGGCTATCCAGAACTTCTCAAAGCTCTGGAAACCATGTTCAAATTGACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCAAGAGGTTTGGGTTGTGGTGTATGA
Protein sequence

>Msa0064280

MEFKATELRLGLPGTDEKEMKTIHGSIVKNNKRQLPQTSEESVSISKVSNDDQHVESSSAAPPAKAKIVGWPPIRSYRKNTLQDAEVGGIYVKVSMDGAPYLRKIDLRVYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLGCGV*