AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028420 MtrunA17_Chr7g0248451 96.617 473 16 0 6 478 11 483 0.0 937
Msa1028420 MtrunA17_Chr8g0348491 79.318 469 97 0 6 474 11 479 0.0 781
Msa1028420 MtrunA17_Chr8g0387391 74.222 450 116 0 27 476 21 470 0.0 728
Msa1028420 MtrunA17_Chr1g0202641 65.152 462 156 2 12 472 16 473 0.0 651
Msa1028420 MtrunA17_Chr1g0202641 64.502 462 160 3 12 472 516 974 0.0 645
Msa1028420 MtrunA17_Chr1g0202651 65.848 448 148 2 26 472 30 473 0.0 629
Msa1028420 MtrunA17_Chr1g0202621 61.720 465 167 3 9 472 6 460 0.0 616
Msa1028420 MtrunA17_Chr7g0255311 62.716 464 158 4 11 471 32 483 0.0 613
Msa1028420 MtrunA17_Chr7g0270821 50.901 444 206 3 11 453 12 444 8.37e-162 466
Msa1028420 MtrunA17_Chr1g0193961 52.567 409 189 3 46 453 39 443 3.33e-159 459
Msa1028420 MtrunA17_Chr3g0095221 47.178 443 229 3 12 453 9 447 8.47e-142 414
Msa1028420 MtrunA17_Chr4g0067811 48.731 394 201 1 46 439 36 428 3.17e-140 410
Msa1028420 MtrunA17_Chr2g0295241 46.599 397 211 1 46 442 33 428 1.73e-138 406
Msa1028420 MtrunA17_Chr4g0070281 47.880 401 206 3 44 442 69 468 1.53e-135 400
Msa1028420 MtrunA17_Chr3g0130251 44.719 445 239 3 6 446 29 470 1.01e-134 397
Msa1028420 MtrunA17_Chr2g0301091 44.820 444 238 5 8 446 15 456 1.29e-131 389
Msa1028420 MtrunA17_Chr5g0442221 48.910 413 200 5 46 453 40 446 4.18e-129 382
Msa1028420 MtrunA17_Chr2g0319881 58.865 141 58 0 46 186 39 179 6.36e-55 181
Msa1028420 MtrunA17_Chr6g0468871 70.130 77 23 0 243 319 22 98 2.44e-33 121
Msa1028420 MtrunA17_Chr5g0418411 30.476 315 181 11 55 361 34 318 7.30e-30 120
Msa1028420 MtrunA17_Chr2g0303941 26.420 405 247 13 47 439 25 390 4.09e-27 112
Msa1028420 MtrunA17_Chr3g0121881 25.714 455 257 20 9 439 1 398 1.29e-25 108
Msa1028420 MtrunA17_Chr3g0121891 26.239 343 208 9 55 387 34 341 2.43e-25 107
Msa1028420 MtrunA17_Chr6g0449961 25.123 406 250 13 16 411 17 378 5.91e-23 100
Msa1028420 MtrunA17_Chr1g0173451 25.784 287 190 7 163 444 172 440 3.99e-22 99.0
Msa1028420 MtrunA17_Chr4g0043661 23.559 399 259 12 51 436 24 389 1.68e-21 96.3
Msa1028420 MtrunA17_Chr5g0413141 26.282 312 187 10 52 350 61 342 2.35e-21 96.7
Msa1028420 MtrunA17_Chr8g0365901 24.938 405 255 12 51 442 66 434 2.37e-21 96.7
Msa1028420 MtrunA17_Chr7g0230891 23.451 452 275 15 1 437 1 396 7.47e-20 91.7
Msa1028420 MtrunA17_Chr2g0332971 26.899 316 184 13 51 350 29 313 1.45e-19 90.5
Msa1028420 MtrunA17_Chr6g0468861 55.224 67 30 0 345 411 3 69 1.56e-19 82.8
Msa1028420 MtrunA17_Chr2g0332801 26.316 304 200 9 145 439 140 428 1.58e-19 90.9
Msa1028420 MtrunA17_Chr1g0150291 24.041 391 254 10 55 437 50 405 4.83e-19 89.0
Msa1028420 MtrunA17_Chr4g0043431 24.812 399 255 14 51 439 36 399 5.40e-19 89.0
Msa1028420 MtrunA17_Chr3g0100091 30.457 197 120 4 151 345 75 256 5.40e-19 88.2
Msa1028420 MtrunA17_Chr8g0337571 25.688 436 263 17 13 439 4 387 1.41e-18 87.4
Msa1028420 MtrunA17_Chr4g0067631 25.553 407 244 16 51 438 53 419 1.50e-18 87.8
Msa1028420 MtrunA17_Chr8g0348981 23.750 400 261 9 51 438 28 395 5.53e-18 85.9
Msa1028420 MtrunA17_Chr8g0336481 27.391 230 137 6 163 388 51 254 9.09e-18 83.2
Msa1028420 MtrunA17_Chr2g0291841 24.586 362 232 10 85 437 29 358 1.07e-17 84.7
Msa1028420 MtrunA17_Chr3g0089021 22.026 454 304 12 5 439 14 436 3.87e-17 83.6
Msa1028420 MtrunA17_Chr7g0258111 26.045 311 187 8 51 347 49 330 7.21e-17 82.8
Msa1028420 MtrunA17_Chr7g0270361 25.649 308 189 10 55 349 72 352 1.44e-16 82.0
Msa1028420 MtrunA17_Chr1g0194231 26.537 309 186 11 55 349 86 367 9.26e-16 79.7
Msa1028420 MtrunA17_Chr1g0150301 23.785 391 263 10 51 437 28 387 2.29e-15 77.8
Msa1028420 MtrunA17_Chr4g0052621 23.317 416 273 13 52 451 67 452 2.30e-15 78.2
Msa1028420 MtrunA17_Chr8g0337581 30.412 194 116 5 155 345 121 298 4.01e-15 77.0
Msa1028420 MtrunA17_Chr1g0195221 24.528 371 236 11 52 411 37 374 7.29e-15 76.3
Msa1028420 MtrunA17_Chr4g0020771 24.490 294 185 8 163 439 168 441 8.71e-15 76.3
Msa1028420 MtrunA17_Chr8g0365891 20.930 430 269 13 51 442 108 504 1.30e-14 76.3
Msa1028420 MtrunA17_Chr4g0018151 27.778 252 160 8 196 439 202 439 3.14e-14 74.7
Msa1028420 MtrunA17_Chr8g0337601 26.939 245 159 6 195 436 8 235 2.54e-13 69.7
Msa1028420 MtrunA17_Chr7g0257721 25.466 322 190 13 19 327 46 330 5.19e-13 70.1
Msa1028420 MtrunA17_Chr2g0307811 25.887 282 164 11 81 348 52 302 7.12e-13 70.1
Msa1028420 MtrunA17_Chr2g0307831 24.709 429 253 20 33 436 6 389 1.13e-12 69.7
Msa1028420 MtrunA17_Chr2g0307821 24.709 429 253 20 33 436 6 389 1.13e-12 69.7
Msa1028420 MtrunA17_Chr1g0149241 21.465 396 245 10 51 442 29 362 2.60e-12 68.2
Msa1028420 MtrunA17_Chr2g0293681 23.171 410 239 13 55 450 72 419 4.78e-12 67.8
Msa1028420 MtrunA17_Chr7g0257701 27.179 195 117 6 157 345 191 366 7.34e-12 67.0
Msa1028420 MtrunA17_Chr7g0228411 22.014 427 254 17 8 398 9 392 7.89e-12 67.0
Msa1028420 MtrunA17_Chr2g0319871 44.444 63 35 0 192 254 1 63 1.60e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028420 AT3G61490.4 69.102 479 139 2 5 474 110 588 0.0 719
Msa1028420 AT3G61490.5 69.102 479 139 2 5 474 12 490 0.0 716
Msa1028420 AT3G61490.2 71.648 455 123 1 26 474 21 475 0.0 714
Msa1028420 AT3G61490.3 71.648 455 123 1 26 474 21 475 0.0 714
Msa1028420 AT3G61490.1 71.648 455 123 1 26 474 21 475 0.0 714
Msa1028420 AT4G23500.1 67.574 441 142 1 38 478 56 495 0.0 645
Msa1028420 AT3G48950.1 63.100 458 167 2 15 470 10 467 0.0 633
Msa1028420 AT2G23900.1 58.849 469 188 4 6 471 10 476 0.0 589
Msa1028420 AT3G62110.1 49.165 419 207 2 46 458 39 457 1.87e-156 452
Msa1028420 AT3G62110.2 49.165 419 207 2 46 458 39 457 1.87e-156 452
Msa1028420 AT4G23820.1 47.682 453 228 3 3 455 1 444 3.70e-147 428
Msa1028420 AT4G33440.1 50.000 406 198 3 51 455 73 474 6.55e-135 398
Msa1028420 AT5G41870.1 46.374 455 232 7 3 454 1 446 6.12e-132 389
Msa1028420 AT3G16850.1 45.750 400 214 1 43 442 33 429 3.29e-127 377
Msa1028420 AT3G42950.1 46.701 394 207 3 51 442 67 459 1.63e-125 374
Msa1028420 AT5G49215.2 45.316 395 215 1 46 439 37 431 5.17e-125 372
Msa1028420 AT5G49215.1 45.316 395 215 1 46 439 39 433 5.88e-125 372
Msa1028420 AT3G06770.5 42.956 433 244 2 7 439 3 432 6.19e-124 369
Msa1028420 AT3G06770.2 42.657 429 245 1 11 439 4 431 1.97e-123 367
Msa1028420 AT1G19170.1 43.878 392 216 4 52 440 89 479 6.48e-120 360
Msa1028420 AT3G06770.1 43.836 365 204 1 78 442 2 365 4.63e-108 326
Msa1028420 AT3G06770.3 43.836 365 204 1 78 442 2 365 4.63e-108 326
Msa1028420 AT3G06770.4 40.407 344 199 2 101 439 2 344 3.86e-88 274
Msa1028420 AT5G17200.1 30.178 338 191 11 11 345 8 303 2.54e-31 125
Msa1028420 AT3G15720.3 28.485 330 187 10 29 349 2 291 5.61e-25 107
Msa1028420 AT3G15720.1 28.485 330 187 10 29 349 3 292 5.93e-25 107
Msa1028420 AT2G41850.1 27.317 410 235 15 49 440 67 431 1.63e-24 105
Msa1028420 AT3G57510.1 24.105 419 241 12 46 439 64 430 3.34e-23 102
Msa1028420 AT1G23460.1 26.131 398 251 13 55 442 72 436 3.83e-23 102
Msa1028420 AT1G23460.2 26.131 398 251 13 55 442 48 412 4.10e-23 102
Msa1028420 AT3G15720.2 28.485 330 184 11 29 349 2 288 4.59e-23 102
Msa1028420 AT5G14650.1 24.631 406 266 12 51 448 52 425 2.37e-22 99.8
Msa1028420 AT1G70500.1 24.828 435 281 13 39 463 60 458 6.11e-22 99.0
Msa1028420 AT2G43870.1 25.743 404 257 11 44 439 15 383 5.01e-21 95.1
Msa1028420 AT3G57790.2 26.603 312 190 7 51 347 36 323 5.46e-21 95.9
Msa1028420 AT3G57790.1 26.603 312 190 7 51 347 36 323 5.46e-21 95.9
Msa1028420 AT3G15720.4 30.244 205 123 5 147 349 42 228 6.07e-21 95.1
Msa1028420 AT3G07970.1 25.249 301 207 6 145 439 150 438 9.34e-21 95.1
Msa1028420 AT5G44840.1 27.729 339 199 14 54 382 28 330 1.42e-20 94.0
Msa1028420 AT3G26610.1 23.913 368 238 11 55 411 72 408 1.50e-20 94.7
Msa1028420 AT1G10640.1 23.218 435 266 14 51 449 120 522 6.93e-20 92.8
Msa1028420 AT2G43880.1 24.685 397 255 12 49 437 30 390 3.42e-19 89.7
Msa1028420 AT4G35670.1 26.861 309 181 12 51 349 25 298 3.48e-19 89.7
Msa1028420 AT2G43880.2 27.597 308 182 10 49 349 30 303 9.82e-19 87.4
Msa1028420 AT5G27530.1 25.253 297 175 10 55 345 58 313 1.39e-18 88.6
Msa1028420 AT4G32380.1 29.907 214 128 6 153 362 118 313 3.81e-18 87.0
Msa1028420 AT5G44830.1 27.232 224 132 6 163 382 75 271 4.76e-18 85.5
Msa1028420 AT1G60590.1 21.847 444 270 14 51 452 124 532 7.14e-18 86.7
Msa1028420 AT4G35670.2 30.693 202 117 7 153 349 8 191 7.15e-18 84.3
Msa1028420 AT1G56710.1 22.438 361 227 9 3 349 13 334 1.58e-17 85.1
Msa1028420 AT1G78400.1 23.691 401 258 11 52 439 37 402 1.78e-17 84.7
Msa1028420 AT1G65570.1 24.510 408 250 15 49 439 30 396 4.28e-17 83.6
Msa1028420 AT1G43090.1 29.032 279 161 10 55 327 36 283 5.55e-17 83.6
Msa1028420 AT1G02460.1 24.679 312 191 8 55 349 94 378 7.17e-17 83.6
Msa1028420 AT1G43100.1 25.445 393 246 16 55 433 36 395 7.54e-17 83.2
Msa1028420 AT2G26620.1 24.103 390 259 11 56 437 37 397 9.18e-17 82.4
Msa1028420 AT1G80170.1 22.980 396 266 11 54 439 57 423 9.71e-17 82.8
Msa1028420 AT4G32380.2 30.093 216 128 7 153 363 118 315 1.41e-16 82.0
Msa1028420 AT1G02790.1 25.776 322 190 13 52 362 54 337 1.80e-16 81.6
Msa1028420 AT3G59850.1 25.436 401 253 12 47 437 20 384 2.21e-16 81.3
Msa1028420 AT2G15460.1 29.856 278 158 10 56 327 37 283 2.22e-16 81.3
Msa1028420 AT3G59850.2 25.436 401 253 12 47 437 64 428 2.32e-16 81.6
Msa1028420 AT1G48100.1 22.912 419 263 13 52 447 82 463 2.60e-16 81.6
Msa1028420 AT2G15450.1 24.937 397 254 15 56 439 37 402 2.93e-16 80.9
Msa1028420 AT5G14650.2 26.429 280 175 10 51 327 52 303 3.24e-16 79.7
Msa1028420 AT1G43080.1 24.874 398 255 15 55 439 36 402 3.81e-16 80.9
Msa1028420 AT2G43860.1 24.427 393 256 15 55 439 38 397 3.87e-16 80.9
Msa1028420 AT2G43890.1 22.939 279 198 6 163 437 123 388 9.24e-16 79.3
Msa1028420 AT2G15470.1 30.466 279 155 13 56 327 37 283 1.35e-15 79.0
Msa1028420 AT4G13760.1 24.250 400 248 15 56 437 37 399 1.52e-15 79.0
Msa1028420 AT4G32375.1 27.778 216 138 6 145 358 11 210 2.01e-15 78.6
Msa1028420 AT4G01890.1 25.962 312 187 11 55 349 70 354 2.59e-15 78.6
Msa1028420 AT1G17150.1 22.927 410 262 12 46 439 29 400 6.82e-15 77.0
Msa1028420 AT1G80140.1 29.924 264 134 13 89 338 6 232 6.21e-14 73.2
Msa1028420 AT2G40310.1 28.276 290 167 12 46 327 27 283 1.44e-13 72.8
Msa1028420 AT5G48140.1 24.783 230 148 6 163 382 113 327 2.29e-13 72.0
Msa1028420 AT1G80170.2 24.382 283 175 10 54 327 57 309 8.24e-13 69.7
Msa1028420 AT1G05650.1 22.064 281 199 8 163 437 122 388 4.14e-12 68.2
Msa1028420 AT1G05660.1 22.064 281 199 8 163 437 122 388 6.48e-12 67.8
Msa1028420 AT3G07820.1 26.471 272 165 11 71 327 19 270 9.74e-12 67.0
Msa1028420 AT3G14040.1 22.623 305 214 8 152 447 154 445 1.19e-11 67.0
Msa1028420 AT4G32370.1 26.496 234 155 6 145 374 119 339 1.54e-11 66.2
Msa1028420 AT5G39910.1 28.488 172 106 4 185 352 145 303 2.75e-11 65.5
Msa1028420 AT3G07850.1 22.112 303 218 7 152 447 153 444 4.18e-11 65.5

Find 108 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTACTCTCAGCTCTTTC+TGG 0.103596 7_1:-61241420 None:intergenic
AGTGCTTCATTGACAGATTT+TGG 0.197810 7_1:+61241498 Msa1028420:CDS
TAGTCACTTTACTCTCTATT+TGG 0.208391 7_1:+61241659 Msa1028420:CDS
GAAGACTGCTACATAGTTTC+TGG 0.221963 7_1:+61244234 Msa1028420:CDS
AGATTCAGAAGCTTCATATT+TGG 0.225619 7_1:+61242907 Msa1028420:CDS
TACTAGTTTATGGAACTTAA+TGG 0.252132 7_1:+61244979 Msa1028420:three_prime_UTR
GCAATCTCAGGCAAAGCATT+AGG 0.278588 7_1:-61244588 None:intergenic
GATGAGTATGGCATCAAATT+TGG 0.279744 7_1:+61244288 Msa1028420:CDS
TAGATGGTCAAGGTGCATTT+TGG 0.290178 7_1:+61243678 Msa1028420:CDS
CATTCCATGATGGGGAATTA+AGG 0.295292 7_1:-61243796 None:intergenic
AAATGCACCTTGACCATCTA+TGG 0.318934 7_1:-61243675 None:intergenic
TGTATGTTCCAGCAGGAAAA+TGG 0.341261 7_1:+61241613 Msa1028420:CDS
AACATAAGTTCAATCAAGTA+TGG 0.351704 7_1:-61243740 None:intergenic
TTAAGCTCCAAGTTATCAAT+AGG 0.357365 7_1:-61244867 None:intergenic
TGCTGTTCTCCTTGCTTCTC+AGG 0.364969 7_1:+61241689 Msa1028420:CDS
TGTGATCTGTTGCCTGATCA+AGG 0.381355 7_1:+61244801 Msa1028420:CDS
CACAGCCATTCGAACAGAAT+CGG 0.394275 7_1:+61244428 Msa1028420:CDS
CAATCTCAGGCAAAGCATTA+GGG 0.397084 7_1:-61244587 None:intergenic
TTACCATGCATACTATGAAA+TGG 0.406911 7_1:+61244514 Msa1028420:CDS
ATGTAATGTAGTTACTGTTA+AGG 0.408424 7_1:+61244913 Msa1028420:exon
GATCAAGGGCCTGAGAAAAT+CGG 0.410347 7_1:+61244816 Msa1028420:CDS
GGAGAGTTAGATTTGAGACT+TGG 0.415256 7_1:-61243775 None:intergenic
ATCAAGGGCCTGAGAAAATC+GGG 0.416111 7_1:+61244817 Msa1028420:CDS
AATCTCTAATGACCCTTTCA+AGG 0.429883 7_1:+61244671 Msa1028420:CDS
GCAATACAAATTCCCTTGAA+AGG 0.434320 7_1:-61244684 None:intergenic
TGCTCTCTTTGTGGTGACAC+TGG 0.434597 7_1:+61241392 Msa1028420:CDS
TAGTGGTACCTGCTGTAAAC+AGG 0.438108 7_1:-61243824 None:intergenic
ATTAGTCACCTAAGTCAGTA+TGG 0.440976 7_1:+61241570 Msa1028420:CDS
GAGTTTACCTATTGATAACT+TGG 0.447467 7_1:+61244860 Msa1028420:CDS
CAATACAAATTCCCTTGAAA+GGG 0.448340 7_1:-61244683 None:intergenic
GACACTAGGGATGGCTGTTA+AGG 0.449298 7_1:+61244713 Msa1028420:CDS
TCAATAGGTAAACTCTCTGC+TGG 0.453641 7_1:-61244852 None:intergenic
AAGAGTGGATGGGATGAGTA+TGG 0.455331 7_1:+61244276 Msa1028420:CDS
ACCATAGCAGCTAGGTTTCA+AGG 0.460046 7_1:+61244648 Msa1028420:CDS
AAGACTGCTACATAGTTTCT+GGG 0.462202 7_1:+61244235 Msa1028420:CDS
GGGGAAAATGGCACCATAGA+TGG 0.463012 7_1:+61243662 Msa1028420:intron
TAGTTGATATTTGCAATCTC+AGG 0.469997 7_1:-61244600 None:intergenic
TACCATGCATACTATGAAAT+GGG 0.473494 7_1:+61244515 Msa1028420:CDS
TCGAATGGCTGTGATGTCTT+CGG 0.474760 7_1:-61244418 None:intergenic
GGGTTGATACCATCAGTGTT+AGG 0.479630 7_1:-61243976 None:intergenic
ACAGCCATTCGAACAGAATC+GGG 0.488436 7_1:+61244429 Msa1028420:CDS
TTCAGTGCAACCATTGCCTT+AGG 0.506121 7_1:+61244360 Msa1028420:CDS
CTCTCCTTAATTCCCCATCA+TGG 0.508913 7_1:+61243792 Msa1028420:CDS
TCCTTGAAACCTAGCTGCTA+TGG 0.510139 7_1:-61244649 None:intergenic
CCTCTACCGTATGATGGTAA+TGG 0.510333 7_1:-61242865 None:intergenic
CAGGATGAACATTCCATGAT+GGG 0.511992 7_1:-61243805 None:intergenic
ATCAAAACAGCTGTTGGTAG+AGG 0.513531 7_1:+61244459 Msa1028420:CDS
CTTGAGAACCATACTGACTT+AGG 0.516248 7_1:-61241578 None:intergenic
TCCTGACATCTCACTTCCTA+AGG 0.516582 7_1:-61244376 None:intergenic
GACACCCGATTCTGTTCGAA+TGG 0.525780 7_1:-61244433 None:intergenic
TGTATTGCAAATGTGACACT+AGG 0.526749 7_1:+61244699 Msa1028420:CDS
GATGGTAATGGTTCAAGCGC+AGG 0.530658 7_1:-61242853 None:intergenic
TGGACATGCACTGATATTGA+AGG 0.532216 7_1:+61244750 Msa1028420:CDS
TGGAAATACATCTAATACAA+AGG 0.532307 7_1:+61241533 Msa1028420:CDS
AAATGGGCATTTAAGATGAC+AGG 0.535872 7_1:+61244531 Msa1028420:CDS
TCTCTTCCTCTACCGTATGA+TGG 0.537275 7_1:-61242871 None:intergenic
GCCTTAGGAAGTGAGATGTC+AGG 0.537657 7_1:+61244375 Msa1028420:CDS
AAGCTTCTGAATCTTCCTGC+TGG 0.539199 7_1:-61242898 None:intergenic
ACAGGATGAACATTCCATGA+TGG 0.539320 7_1:-61243806 None:intergenic
GTGATCTGTTGCCTGATCAA+GGG 0.542192 7_1:+61244802 Msa1028420:CDS
AGAGGAAGAGATGCACCAGC+AGG 0.542607 7_1:+61242883 Msa1028420:CDS
CTCACGGATGTTATTGTCAC+AGG 0.543826 7_1:+61242937 Msa1028420:CDS
GTGTTGCTGTGAAGAGTGGA+TGG 0.544315 7_1:+61244265 Msa1028420:CDS
TGCCCATTTCATAGTATGCA+TGG 0.547287 7_1:-61244517 None:intergenic
CCAGCAGGAAAATGGCTCAC+TGG 0.548013 7_1:+61241621 Msa1028420:CDS
ATGTTCATCCTGTTTACAGC+AGG 0.549806 7_1:+61243816 Msa1028420:CDS
AAAACAGCTGTTGGTAGAGG+AGG 0.553170 7_1:+61244462 Msa1028420:CDS
CTAAGTCAGTATGGTTCTCA+AGG 0.555173 7_1:+61241579 Msa1028420:CDS
ATCTCATCTCCTAACACTGA+TGG 0.557144 7_1:+61243967 Msa1028420:CDS
AAGGCAATGGTTGCACTGAA+TGG 0.560248 7_1:-61244357 None:intergenic
TCTCAGCTGTATGTTCCAGC+AGG 0.565650 7_1:+61241606 Msa1028420:CDS
ATCTCTAATGACCCTTTCAA+GGG 0.573035 7_1:+61244672 Msa1028420:CDS
AGTATGGCATCAAATTTGGC+AGG 0.573064 7_1:+61244292 Msa1028420:CDS
TATCAACTATAGAGATGTTG+TGG 0.574989 7_1:+61244614 Msa1028420:CDS
GACTGTGTTGCTGTGAAGAG+TGG 0.579759 7_1:+61244261 Msa1028420:CDS
TCAGTGTTAGGAGATGAGAT+AGG 0.579789 7_1:-61243964 None:intergenic
GTCAGAATCAAAACAGCTGT+TGG 0.583176 7_1:+61244453 Msa1028420:CDS
CAATAGGTAAACTCTCTGCT+GGG 0.588902 7_1:-61244851 None:intergenic
CCATTACCATCATACGGTAG+AGG 0.588919 7_1:+61242865 Msa1028420:CDS
CATCTCACTTCCTAAGGCAA+TGG 0.591067 7_1:-61244370 None:intergenic
CTTGAACCATTACCATCATA+CGG 0.596573 7_1:+61242859 Msa1028420:CDS
TGGCTGTTAAGGCCAAGAAA+AGG 0.599659 7_1:+61244724 Msa1028420:CDS
ACAACTTCATTTGAGTACAA+TGG 0.606953 7_1:+61241456 Msa1028420:CDS
GGCAACAGATCACAAGGCGG+AGG 0.607948 7_1:-61244792 None:intergenic
TACAGCAACATTATTATACA+AGG 0.609021 7_1:+61243925 Msa1028420:intron
TTAAGGCCAAGAAAAGGTCA+TGG 0.613134 7_1:+61244730 Msa1028420:CDS
AAACAGCTGTTGGTAGAGGA+GGG 0.626382 7_1:+61244463 Msa1028420:CDS
AGAATGTTACCATAGCAGCT+AGG 0.630037 7_1:+61244640 Msa1028420:CDS
AATGAGATACCTGAGAAGCA+AGG 0.630823 7_1:-61241698 None:intergenic
TGATCAGGCAACAGATCACA+AGG 0.647899 7_1:-61244798 None:intergenic
AATGGCACCATAGATGGTCA+AGG 0.649066 7_1:+61243668 Msa1028420:CDS
TTAGGAAGTGAGATGTCAGG+AGG 0.656161 7_1:+61244378 Msa1028420:CDS
CATATTTGGAACAAACCTCA+CGG 0.657666 7_1:+61242921 Msa1028420:CDS
AACACTGATGGTATCAACCC+AGG 0.663362 7_1:+61243979 Msa1028420:CDS
AGGATGAACATTCCATGATG+GGG 0.669694 7_1:-61243804 None:intergenic
AGTCAGTATGGTTCTCAAGG+TGG 0.672780 7_1:+61241582 Msa1028420:CDS
AGACTGCTACATAGTTTCTG+GGG 0.678381 7_1:+61244236 Msa1028420:CDS
TGCAAATGTGACACTAGGGA+TGG 0.678533 7_1:+61244704 Msa1028420:CDS
GGACATGCACTGATATTGAA+GGG 0.687510 7_1:+61244751 Msa1028420:CDS
GTATTGCAAATGTGACACTA+GGG 0.688606 7_1:+61244700 Msa1028420:CDS
TGGTAGAGGAGGGTATGTGA+AGG 0.693483 7_1:+61244473 Msa1028420:CDS
TAGGAAGTGAGATGTCAGGA+GGG 0.694750 7_1:+61244379 Msa1028420:CDS
TGTTGCTGTGAAGAGTGGAT+GGG 0.695217 7_1:+61244266 Msa1028420:CDS
TCAAGGGCCTGAGAAAATCG+GGG 0.709585 7_1:+61244818 Msa1028420:CDS
GATATTGAAGGGATGACTAG+CGG 0.711886 7_1:+61244762 Msa1028420:CDS
TAATGTAGGATATCACTGAG+TGG 0.726207 7_1:+61242830 Msa1028420:intron
CTGTGACAATAACATCCGTG+AGG 0.748176 7_1:-61242936 None:intergenic
TCAGGCAACAGATCACAAGG+CGG 0.811321 7_1:-61244795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTATCAAACATTTT+AGG + chr7_1:61242024-61242043 Msa1028420:intron 10.0%
!! TTGTATTAATAAAATAATGT+AGG + chr7_1:61242816-61242835 Msa1028420:intron 10.0%
!! AATGTTTGATAAAAAATTGT+GGG - chr7_1:61242022-61242041 None:intergenic 15.0%
!! AAATGTTTGATAAAAAATTG+TGG - chr7_1:61242023-61242042 None:intergenic 15.0%
!!! TTTTCTTGATATTCTTAAAT+TGG - chr7_1:61242441-61242460 None:intergenic 15.0%
!!! GTTAATCATACATTTTTATT+GGG - chr7_1:61244037-61244056 None:intergenic 15.0%
!!! CATTAATTTTTACTCCATTT+TGG + chr7_1:61241717-61241736 Msa1028420:intron 20.0%
!! ATGTTTGATAAAAAATTGTG+GGG - chr7_1:61242021-61242040 None:intergenic 20.0%
!!! TTTTTTTTGTTAAAACTCTC+CGG + chr7_1:61242090-61242109 Msa1028420:intron 20.0%
!! AGTTGGAAGAAAATTAAAAA+CGG - chr7_1:61242281-61242300 None:intergenic 20.0%
!! TATACACACTATAATTTAGT+TGG - chr7_1:61242298-61242317 None:intergenic 20.0%
!! AATTATAGTGTGTATATGTT+TGG + chr7_1:61242302-61242321 Msa1028420:intron 20.0%
!! AAGAATATCAAGAAAATAGA+TGG + chr7_1:61242445-61242464 Msa1028420:intron 20.0%
!! ATAGCAAAAGACAAATTTAA+CGG - chr7_1:61242702-61242721 None:intergenic 20.0%
!!! GATTTTGAACAATTAGTTTA+AGG + chr7_1:61243164-61243183 Msa1028420:intron 20.0%
!!! TATAATGGCAAATTGTATTT+TGG - chr7_1:61243411-61243430 None:intergenic 20.0%
!!! TGCCATTATAGATAAATTTT+AGG + chr7_1:61243421-61243440 Msa1028420:intron 20.0%
!!! GCCATTATAGATAAATTTTA+GGG + chr7_1:61243422-61243441 Msa1028420:intron 20.0%
!! ACCCTAAAATTTATCTATAA+TGG - chr7_1:61243426-61243445 None:intergenic 20.0%
!!! TAAGAAAAAACTTCTACTTT+TGG + chr7_1:61243562-61243581 Msa1028420:intron 20.0%
!!! CACAGTTGATATTAAAATTT+AGG - chr7_1:61243627-61243646 None:intergenic 20.0%
!!! CGTTAATCATACATTTTTAT+TGG - chr7_1:61244038-61244057 None:intergenic 20.0%
!! AATAATTTTTGCTCTCTTTG+TGG + chr7_1:61241383-61241402 Msa1028420:CDS 25.0%
! TGGAAATACATCTAATACAA+AGG + chr7_1:61241533-61241552 Msa1028420:CDS 25.0%
! TAGTTAATTAGTCACCAAAA+TGG - chr7_1:61241734-61241753 None:intergenic 25.0%
! TTCCTCATGAAAATTTACTA+TGG + chr7_1:61242113-61242132 Msa1028420:intron 25.0%
!! TACCATAGTAAATTTTCATG+AGG - chr7_1:61242118-61242137 None:intergenic 25.0%
! ATTTACCTTTAGCTGAATTT+CGG - chr7_1:61242143-61242162 None:intergenic 25.0%
! TCAAGTGATTAATGAATTCA+CGG + chr7_1:61242399-61242418 Msa1028420:intron 25.0%
! AAGAAAATAGATGGTTATAG+AGG + chr7_1:61242454-61242473 Msa1028420:intron 25.0%
! AGAAAATAGATGGTTATAGA+GGG + chr7_1:61242455-61242474 Msa1028420:intron 25.0%
!! TTTTTGTGAATCAAAGGTTT+AGG - chr7_1:61242611-61242630 None:intergenic 25.0%
!!! AAGTTGTTTTTGTGAATCAA+AGG - chr7_1:61242617-61242636 None:intergenic 25.0%
!!! GAATAGGCTATGTTTTTTTT+TGG - chr7_1:61243046-61243065 None:intergenic 25.0%
!! GATTTTGAGCAAATTAGTTA+TGG + chr7_1:61243087-61243106 Msa1028420:intron 25.0%
! TGAGTTAAGTTTATTGATGT+CGG - chr7_1:61243219-61243238 None:intergenic 25.0%
! AACATAAGTTCAATCAAGTA+TGG - chr7_1:61243743-61243762 None:intergenic 25.0%
!! CAGTCTTTAAAAGTAAAAGA+GGG - chr7_1:61243882-61243901 None:intergenic 25.0%
!! ACAGTCTTTAAAAGTAAAAG+AGG - chr7_1:61243883-61243902 None:intergenic 25.0%
! TGTATAATAATGTTGCTGTA+TGG - chr7_1:61243925-61243944 None:intergenic 25.0%
! TACAGCAACATTATTATACA+AGG + chr7_1:61243925-61243944 Msa1028420:intron 25.0%
!! CTTTTCTGTTAGATTATGTT+TGG - chr7_1:61244094-61244113 None:intergenic 25.0%
! AGAATCTAACATCAACATAA+AGG - chr7_1:61244196-61244215 None:intergenic 25.0%
! ATGTAATGTAGTTACTGTTA+AGG + chr7_1:61244913-61244932 Msa1028420:exon 25.0%
!!! CTTTTTTCTCTACTAGTTTA+TGG + chr7_1:61244969-61244988 Msa1028420:three_prime_UTR 25.0%
!! TACTAGTTTATGGAACTTAA+TGG + chr7_1:61244979-61244998 Msa1028420:three_prime_UTR 25.0%
ACAACTTCATTTGAGTACAA+TGG + chr7_1:61241456-61241475 Msa1028420:CDS 30.0%
! TAGTCACTTTACTCTCTATT+TGG + chr7_1:61241659-61241678 Msa1028420:CDS 30.0%
! AACTATGAAGTACTCGAATT+TGG + chr7_1:61241749-61241768 Msa1028420:intron 30.0%
TTCAATGTAATCATATGCGT+CGG - chr7_1:61241811-61241830 None:intergenic 30.0%
TGTCAGTATATGGACTTTAA+AGG + chr7_1:61241868-61241887 Msa1028420:intron 30.0%
CTTAGCAAGTGTTTATTATG+TGG + chr7_1:61241919-61241938 Msa1028420:intron 30.0%
! GGCTTTAACATAACAAGTTA+TGG - chr7_1:61241980-61241999 None:intergenic 30.0%
! AGTAAATTTTCATGAGGAAC+CGG - chr7_1:61242112-61242131 None:intergenic 30.0%
CTCACGTAAACTTAACTTTA+CGG + chr7_1:61242358-61242377 Msa1028420:intron 30.0%
TAACTTTACGGTGAATCAAT+TGG + chr7_1:61242370-61242389 Msa1028420:intron 30.0%
TATTGCTCTAATAGAAAGTG+AGG - chr7_1:61242547-61242566 None:intergenic 30.0%
! TTCTGAGTGTGAAACATTTT+TGG + chr7_1:61242739-61242758 Msa1028420:intron 30.0%
AGATTCAGAAGCTTCATATT+TGG + chr7_1:61242907-61242926 Msa1028420:CDS 30.0%
GTAAGATTAAAAAAACCGCA+AGG + chr7_1:61243293-61243312 Msa1028420:intron 30.0%
! GTTCTACTTCTTCTAGAAAA+CGG + chr7_1:61243315-61243334 Msa1028420:intron 30.0%
! ATTTTCCCCTGTTAACAAAA+GGG - chr7_1:61243651-61243670 None:intergenic 30.0%
AAATCTTCAAATACTGACCT+GGG - chr7_1:61243999-61244018 None:intergenic 30.0%
AAAATCTTCAAATACTGACC+TGG - chr7_1:61244000-61244019 None:intergenic 30.0%
ACAATGCAACCAAAAAACTA+TGG + chr7_1:61244142-61244161 Msa1028420:intron 30.0%
!!! CAATCCAATCCATAGTTTTT+TGG - chr7_1:61244154-61244173 None:intergenic 30.0%
!! CTGATTACTAGTTGTTTTGT+AGG - chr7_1:61244318-61244337 None:intergenic 30.0%
TTACCATGCATACTATGAAA+TGG + chr7_1:61244514-61244533 Msa1028420:CDS 30.0%
TACCATGCATACTATGAAAT+GGG + chr7_1:61244515-61244534 Msa1028420:CDS 30.0%
! TAGTTGATATTTGCAATCTC+AGG - chr7_1:61244603-61244622 None:intergenic 30.0%
TATCAACTATAGAGATGTTG+TGG + chr7_1:61244614-61244633 Msa1028420:CDS 30.0%
CAATACAAATTCCCTTGAAA+GGG - chr7_1:61244686-61244705 None:intergenic 30.0%
! GAGTTTACCTATTGATAACT+TGG + chr7_1:61244860-61244879 Msa1028420:CDS 30.0%
TTAAGCTCCAAGTTATCAAT+AGG - chr7_1:61244870-61244889 None:intergenic 30.0%
! AGTGCTTCATTGACAGATTT+TGG + chr7_1:61241498-61241517 Msa1028420:CDS 35.0%
ATTAGTCACCTAAGTCAGTA+TGG + chr7_1:61241570-61241589 Msa1028420:CDS 35.0%
GTAATCCGAAATTCAGCTAA+AGG + chr7_1:61242135-61242154 Msa1028420:intron 35.0%
CGTAAAGTTAAGTTTACGTG+AGG - chr7_1:61242360-61242379 None:intergenic 35.0%
! ATTTAACGGACCACACATTA+TGG - chr7_1:61242688-61242707 None:intergenic 35.0%
TAATGTAGGATATCACTGAG+TGG + chr7_1:61242830-61242849 Msa1028420:intron 35.0%
CTTGAACCATTACCATCATA+CGG + chr7_1:61242859-61242878 Msa1028420:CDS 35.0%
! CATATTTGGAACAAACCTCA+CGG + chr7_1:61242921-61242940 Msa1028420:CDS 35.0%
GATGTTATTGTCACAGGTAT+GGG + chr7_1:61242943-61242962 Msa1028420:intron 35.0%
ATGTTATTGTCACAGGTATG+GGG + chr7_1:61242944-61242963 Msa1028420:intron 35.0%
! GTCAATCACTGTTAGTGTTT+TGG + chr7_1:61243339-61243358 Msa1028420:intron 35.0%
TTCCTTAACTTATGCCCTAA+GGG + chr7_1:61243585-61243604 Msa1028420:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG - chr7_1:61243602-61243621 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG - chr7_1:61243603-61243622 None:intergenic 35.0%
! CATTTTCCCCTGTTAACAAA+AGG - chr7_1:61243652-61243671 None:intergenic 35.0%
! CTTTTGTTAACAGGGGAAAA+TGG + chr7_1:61243650-61243669 Msa1028420:intron 35.0%
GTGAATATACGCATTAGTAG+TGG - chr7_1:61243844-61243863 None:intergenic 35.0%
GCAACCAAAAAACTATGGAT+TGG + chr7_1:61244147-61244166 Msa1028420:intron 35.0%
AAGACTGCTACATAGTTTCT+GGG + chr7_1:61244235-61244254 Msa1028420:CDS 35.0%
GATGAGTATGGCATCAAATT+TGG + chr7_1:61244288-61244307 Msa1028420:CDS 35.0%
! AAATGGGCATTTAAGATGAC+AGG + chr7_1:61244531-61244550 Msa1028420:CDS 35.0%
AATCTCTAATGACCCTTTCA+AGG + chr7_1:61244671-61244690 Msa1028420:CDS 35.0%
ATCTCTAATGACCCTTTCAA+GGG + chr7_1:61244672-61244691 Msa1028420:CDS 35.0%
GCAATACAAATTCCCTTGAA+AGG - chr7_1:61244687-61244706 None:intergenic 35.0%
TGTATTGCAAATGTGACACT+AGG + chr7_1:61244699-61244718 Msa1028420:CDS 35.0%
GTATTGCAAATGTGACACTA+GGG + chr7_1:61244700-61244719 Msa1028420:CDS 35.0%
TTTCTACTCTCAGCTCTTTC+TGG - chr7_1:61241423-61241442 None:intergenic 40.0%
! GCTTCATTGACAGATTTTGG+TGG + chr7_1:61241501-61241520 Msa1028420:CDS 40.0%
!!! TTGACAGATTTTGGTGGTGT+TGG + chr7_1:61241507-61241526 Msa1028420:CDS 40.0%
!! CTTGAGAACCATACTGACTT+AGG - chr7_1:61241581-61241600 None:intergenic 40.0%
CTAAGTCAGTATGGTTCTCA+AGG + chr7_1:61241579-61241598 Msa1028420:CDS 40.0%
TGTATGTTCCAGCAGGAAAA+TGG + chr7_1:61241613-61241632 Msa1028420:CDS 40.0%
AATGAGATACCTGAGAAGCA+AGG - chr7_1:61241701-61241720 None:intergenic 40.0%
TTATAGAGGGAATCACGTGA+GGG + chr7_1:61242468-61242487 Msa1028420:intron 40.0%
GGATGTTATTGTCACAGGTA+TGG + chr7_1:61242942-61242961 Msa1028420:intron 40.0%
AAAACATAGCCTATTCGACG+TGG + chr7_1:61243050-61243069 Msa1028420:intron 40.0%
CTAGAAGAAGTAGAACCTTG+CGG - chr7_1:61243311-61243330 None:intergenic 40.0%
!! GTATTTTGGACCACCTATGA+AGG - chr7_1:61243397-61243416 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr7_1:61243445-61243464 Msa1028420:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr7_1:61243446-61243465 Msa1028420:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG - chr7_1:61243463-61243482 None:intergenic 40.0%
GTTCCTTAACTTATGCCCTA+AGG + chr7_1:61243584-61243603 Msa1028420:intron 40.0%
! ACTGTGACCCTTTTGTTAAC+AGG + chr7_1:61243641-61243660 Msa1028420:intron 40.0%
! CTGTGACCCTTTTGTTAACA+GGG + chr7_1:61243642-61243661 Msa1028420:intron 40.0%
! TGTGACCCTTTTGTTAACAG+GGG + chr7_1:61243643-61243662 Msa1028420:intron 40.0%
AAATGCACCTTGACCATCTA+TGG - chr7_1:61243678-61243697 None:intergenic 40.0%
! TAGATGGTCAAGGTGCATTT+TGG + chr7_1:61243678-61243697 Msa1028420:CDS 40.0%
! GGAGAGTTAGATTTGAGACT+TGG - chr7_1:61243778-61243797 None:intergenic 40.0%
! CATTCCATGATGGGGAATTA+AGG - chr7_1:61243799-61243818 None:intergenic 40.0%
AGGATGAACATTCCATGATG+GGG - chr7_1:61243807-61243826 None:intergenic 40.0%
CAGGATGAACATTCCATGAT+GGG - chr7_1:61243808-61243827 None:intergenic 40.0%
ACAGGATGAACATTCCATGA+TGG - chr7_1:61243809-61243828 None:intergenic 40.0%
ATGTTCATCCTGTTTACAGC+AGG + chr7_1:61243816-61243835 Msa1028420:CDS 40.0%
TCAGTGTTAGGAGATGAGAT+AGG - chr7_1:61243967-61243986 None:intergenic 40.0%
ATCTCATCTCCTAACACTGA+TGG + chr7_1:61243967-61243986 Msa1028420:CDS 40.0%
GAAGACTGCTACATAGTTTC+TGG + chr7_1:61244234-61244253 Msa1028420:CDS 40.0%
AGACTGCTACATAGTTTCTG+GGG + chr7_1:61244236-61244255 Msa1028420:CDS 40.0%
AGTATGGCATCAAATTTGGC+AGG + chr7_1:61244292-61244311 Msa1028420:CDS 40.0%
GTCAGAATCAAAACAGCTGT+TGG + chr7_1:61244453-61244472 Msa1028420:CDS 40.0%
! ATCAAAACAGCTGTTGGTAG+AGG + chr7_1:61244459-61244478 Msa1028420:CDS 40.0%
TGCCCATTTCATAGTATGCA+TGG - chr7_1:61244520-61244539 None:intergenic 40.0%
! CAATCTCAGGCAAAGCATTA+GGG - chr7_1:61244590-61244609 None:intergenic 40.0%
AGAATGTTACCATAGCAGCT+AGG + chr7_1:61244640-61244659 Msa1028420:CDS 40.0%
TTAAGGCCAAGAAAAGGTCA+TGG + chr7_1:61244730-61244749 Msa1028420:CDS 40.0%
! TGGACATGCACTGATATTGA+AGG + chr7_1:61244750-61244769 Msa1028420:CDS 40.0%
! GGACATGCACTGATATTGAA+GGG + chr7_1:61244751-61244770 Msa1028420:CDS 40.0%
GATATTGAAGGGATGACTAG+CGG + chr7_1:61244762-61244781 Msa1028420:CDS 40.0%
CAATAGGTAAACTCTCTGCT+GGG - chr7_1:61244854-61244873 None:intergenic 40.0%
TCAATAGGTAAACTCTCTGC+TGG - chr7_1:61244855-61244874 None:intergenic 40.0%
!!! GATTTTGGTGGTGTTGGAGA+TGG + chr7_1:61241513-61241532 Msa1028420:CDS 45.0%
AGTCAGTATGGTTCTCAAGG+TGG + chr7_1:61241582-61241601 Msa1028420:CDS 45.0%
!! TACTCGAATTTGGTGTGTCC+TGG + chr7_1:61241759-61241778 Msa1028420:intron 45.0%
! GTAATCATATGCGTCGGTGT+GGG - chr7_1:61241805-61241824 None:intergenic 45.0%
! TGTAATCATATGCGTCGGTG+TGG - chr7_1:61241806-61241825 None:intergenic 45.0%
GGGTAGCTGCATCTTGAAAA+GGG - chr7_1:61242001-61242020 None:intergenic 45.0%
GTTATAGAGGGAATCACGTG+AGG + chr7_1:61242467-61242486 Msa1028420:intron 45.0%
CCTGATTGGTGTGTGAATGT+AGG - chr7_1:61242665-61242684 None:intergenic 45.0%
CCTACATTCACACACCAATC+AGG + chr7_1:61242662-61242681 Msa1028420:intron 45.0%
ACCAATCAGGCCATAATGTG+TGG + chr7_1:61242675-61242694 Msa1028420:intron 45.0%
ACCACACATTATGGCCTGAT+TGG - chr7_1:61242679-61242698 None:intergenic 45.0%
CCTCTACCGTATGATGGTAA+TGG - chr7_1:61242868-61242887 None:intergenic 45.0%
CCATTACCATCATACGGTAG+AGG + chr7_1:61242865-61242884 Msa1028420:CDS 45.0%
TCTCTTCCTCTACCGTATGA+TGG - chr7_1:61242874-61242893 None:intergenic 45.0%
AAGCTTCTGAATCTTCCTGC+TGG - chr7_1:61242901-61242920 None:intergenic 45.0%
CTGTGACAATAACATCCGTG+AGG - chr7_1:61242939-61242958 None:intergenic 45.0%
CTCACGGATGTTATTGTCAC+AGG + chr7_1:61242937-61242956 Msa1028420:CDS 45.0%
GACAGTGACTTGACTGATGT+CGG - chr7_1:61243267-61243286 None:intergenic 45.0%
! TTTTGGACCACCTATGAAGG+TGG - chr7_1:61243394-61243413 None:intergenic 45.0%
!! GTTCCTTAACTTGTGCCCTA+AGG - chr7_1:61243464-61243483 None:intergenic 45.0%
TGCCCTTAGGGCATAAGTTA+AGG - chr7_1:61243590-61243609 None:intergenic 45.0%
AATGGCACCATAGATGGTCA+AGG + chr7_1:61243668-61243687 Msa1028420:CDS 45.0%
! ATGGTCAAGGTGCATTTTGG+TGG + chr7_1:61243681-61243700 Msa1028420:CDS 45.0%
CTCTCCTTAATTCCCCATCA+TGG + chr7_1:61243792-61243811 Msa1028420:CDS 45.0%
TAGTGGTACCTGCTGTAAAC+AGG - chr7_1:61243827-61243846 None:intergenic 45.0%
!! GGGTTGATACCATCAGTGTT+AGG - chr7_1:61243979-61243998 None:intergenic 45.0%
AACACTGATGGTATCAACCC+AGG + chr7_1:61243979-61243998 Msa1028420:CDS 45.0%
TGTTGCTGTGAAGAGTGGAT+GGG + chr7_1:61244266-61244285 Msa1028420:CDS 45.0%
AAGAGTGGATGGGATGAGTA+TGG + chr7_1:61244276-61244295 Msa1028420:CDS 45.0%
AAGGCAATGGTTGCACTGAA+TGG - chr7_1:61244360-61244379 None:intergenic 45.0%
TTCAGTGCAACCATTGCCTT+AGG + chr7_1:61244360-61244379 Msa1028420:CDS 45.0%
CATCTCACTTCCTAAGGCAA+TGG - chr7_1:61244373-61244392 None:intergenic 45.0%
TCCTGACATCTCACTTCCTA+AGG - chr7_1:61244379-61244398 None:intergenic 45.0%
TTAGGAAGTGAGATGTCAGG+AGG + chr7_1:61244378-61244397 Msa1028420:CDS 45.0%
TAGGAAGTGAGATGTCAGGA+GGG + chr7_1:61244379-61244398 Msa1028420:CDS 45.0%
TCGAATGGCTGTGATGTCTT+CGG - chr7_1:61244421-61244440 None:intergenic 45.0%
CACAGCCATTCGAACAGAAT+CGG + chr7_1:61244428-61244447 Msa1028420:CDS 45.0%
ACAGCCATTCGAACAGAATC+GGG + chr7_1:61244429-61244448 Msa1028420:CDS 45.0%
! AAAACAGCTGTTGGTAGAGG+AGG + chr7_1:61244462-61244481 Msa1028420:CDS 45.0%
! AAACAGCTGTTGGTAGAGGA+GGG + chr7_1:61244463-61244482 Msa1028420:CDS 45.0%
! GCAATCTCAGGCAAAGCATT+AGG - chr7_1:61244591-61244610 None:intergenic 45.0%
ACCATAGCAGCTAGGTTTCA+AGG + chr7_1:61244648-61244667 Msa1028420:CDS 45.0%
TCCTTGAAACCTAGCTGCTA+TGG - chr7_1:61244652-61244671 None:intergenic 45.0%
TGCAAATGTGACACTAGGGA+TGG + chr7_1:61244704-61244723 Msa1028420:CDS 45.0%
TGGCTGTTAAGGCCAAGAAA+AGG + chr7_1:61244724-61244743 Msa1028420:CDS 45.0%
! GCATGTCCATGACCTTTTCT+TGG - chr7_1:61244739-61244758 None:intergenic 45.0%
TGATCAGGCAACAGATCACA+AGG - chr7_1:61244801-61244820 None:intergenic 45.0%
TGTGATCTGTTGCCTGATCA+AGG + chr7_1:61244801-61244820 Msa1028420:CDS 45.0%
GTGATCTGTTGCCTGATCAA+GGG + chr7_1:61244802-61244821 Msa1028420:CDS 45.0%
! ATTTTCTCAGGCCCTTGATC+AGG - chr7_1:61244816-61244835 None:intergenic 45.0%
GATCAAGGGCCTGAGAAAAT+CGG + chr7_1:61244816-61244835 Msa1028420:CDS 45.0%
ATCAAGGGCCTGAGAAAATC+GGG + chr7_1:61244817-61244836 Msa1028420:CDS 45.0%
!!! AAAAAAAAAAAAAAAGATTT+TGG - chr7_1:61242075-61242094 None:intergenic 5.0%
TGCTCTCTTTGTGGTGACAC+TGG + chr7_1:61241392-61241411 Msa1028420:CDS 50.0%
TCTCAGCTGTATGTTCCAGC+AGG + chr7_1:61241606-61241625 Msa1028420:CDS 50.0%
TGCTGTTCTCCTTGCTTCTC+AGG + chr7_1:61241689-61241708 Msa1028420:CDS 50.0%
GACGTCGACGTGTCAGTATA+TGG + chr7_1:61241858-61241877 Msa1028420:intron 50.0%
GGGGTAGCTGCATCTTGAAA+AGG - chr7_1:61242002-61242021 None:intergenic 50.0%
!! GATGGTAATGGTTCAAGCGC+AGG - chr7_1:61242856-61242875 None:intergenic 50.0%
ACATAGCCTATTCGACGTGG+CGG + chr7_1:61243053-61243072 Msa1028420:intron 50.0%
TTATCACCGCCACGTCGAAT+AGG - chr7_1:61243062-61243081 None:intergenic 50.0%
CCTATGAAGGTGGTACACTG+TGG - chr7_1:61243384-61243403 None:intergenic 50.0%
CCACAGTGTACCACCTTCAT+AGG + chr7_1:61243381-61243400 Msa1028420:intron 50.0%
CAGTGTACCACCTTCATAGG+TGG + chr7_1:61243384-61243403 Msa1028420:intron 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + chr7_1:61243458-61243477 Msa1028420:intron 50.0%
GGGGAAAATGGCACCATAGA+TGG + chr7_1:61243662-61243681 Msa1028420:intron 50.0%
! GACTGTGTTGCTGTGAAGAG+TGG + chr7_1:61244261-61244280 Msa1028420:CDS 50.0%
! GTGTTGCTGTGAAGAGTGGA+TGG + chr7_1:61244265-61244284 Msa1028420:CDS 50.0%
GCCTTAGGAAGTGAGATGTC+AGG + chr7_1:61244375-61244394 Msa1028420:CDS 50.0%
GACACCCGATTCTGTTCGAA+TGG - chr7_1:61244436-61244455 None:intergenic 50.0%
! TGGTAGAGGAGGGTATGTGA+AGG + chr7_1:61244473-61244492 Msa1028420:CDS 50.0%
GACACTAGGGATGGCTGTTA+AGG + chr7_1:61244713-61244732 Msa1028420:CDS 50.0%
TCAGGCAACAGATCACAAGG+CGG - chr7_1:61244798-61244817 None:intergenic 50.0%
TCAAGGGCCTGAGAAAATCG+GGG + chr7_1:61244818-61244837 Msa1028420:CDS 50.0%
! TCACATGCCCCGATTTTCTC+AGG - chr7_1:61244828-61244847 None:intergenic 50.0%
!! CCAGTGAGCCATTTTCCTGC+TGG - chr7_1:61241624-61241643 None:intergenic 55.0%
CCAGCAGGAAAATGGCTCAC+TGG + chr7_1:61241621-61241640 Msa1028420:CDS 55.0%
AACGACTCATGTGCGACACC+AGG - chr7_1:61241780-61241799 None:intergenic 55.0%
AGAGGAAGAGATGCACCAGC+AGG + chr7_1:61242883-61242902 Msa1028420:CDS 55.0%
GGCAACAGATCACAAGGCGG+AGG - chr7_1:61244795-61244814 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 61241354 61245064 61241354 ID=Msa1028420;Name=Msa1028420
chr7_1 mRNA 61241354 61245064 61241354 ID=Msa1028420-mRNA-1;Parent=Msa1028420;Name=Msa1028420-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.8|1|1|1|5|141|478
chr7_1 exon 61241354 61241710 61241354 ID=Msa1028420-mRNA-1:exon:12875;Parent=Msa1028420-mRNA-1
chr7_1 exon 61242838 61242958 61242838 ID=Msa1028420-mRNA-1:exon:12876;Parent=Msa1028420-mRNA-1
chr7_1 exon 61243663 61243837 61243663 ID=Msa1028420-mRNA-1:exon:12877;Parent=Msa1028420-mRNA-1
chr7_1 exon 61243930 61244000 61243930 ID=Msa1028420-mRNA-1:exon:12878;Parent=Msa1028420-mRNA-1
chr7_1 exon 61244211 61245064 61244211 ID=Msa1028420-mRNA-1:exon:12879;Parent=Msa1028420-mRNA-1
chr7_1 CDS 61241354 61241710 61241354 ID=Msa1028420-mRNA-1:cds;Parent=Msa1028420-mRNA-1
chr7_1 CDS 61242838 61242958 61242838 ID=Msa1028420-mRNA-1:cds;Parent=Msa1028420-mRNA-1
chr7_1 CDS 61243663 61243837 61243663 ID=Msa1028420-mRNA-1:cds;Parent=Msa1028420-mRNA-1
chr7_1 CDS 61243930 61244000 61243930 ID=Msa1028420-mRNA-1:cds;Parent=Msa1028420-mRNA-1
chr7_1 CDS 61244211 61244923 61244211 ID=Msa1028420-mRNA-1:cds;Parent=Msa1028420-mRNA-1
chr7_1 three_prime_UTR 61244924 61245064 61244924 ID=Msa1028420-mRNA-1:three_prime_utr;Parent=Msa1028420-mRNA-1
Gene Sequence

>Msa1028420

ATGGCTATGTTGATTTTACAGGTTCTAAAAATAATTTTTGCTCTCTTTGTGGTGACACTGGTGTATCCAGAAAGAGCTGAGAGTAGAAAAGCAAAAATTGTGACAACTTCATTTGAGTACAATGGTATAAATTGTAGAGCACATAGTGCTTCATTGACAGATTTTGGTGGTGTTGGAGATGGAAATACATCTAATACAAAGGCTTTTGAGTCTGCAATTAGTCACCTAAGTCAGTATGGTTCTCAAGGTGGCTCTCAGCTGTATGTTCCAGCAGGAAAATGGCTCACTGGTAGTTTTAGTCTTACTAGTCACTTTACTCTCTATTTGGATAAAGATGCTGTTCTCCTTGCTTCTCAGGATATCACTGAGTGGCCTGCGCTTGAACCATTACCATCATACGGTAGAGGAAGAGATGCACCAGCAGGAAGATTCAGAAGCTTCATATTTGGAACAAACCTCACGGATGTTATTGTCACAGGGGAAAATGGCACCATAGATGGTCAAGGTGCATTTTGGTGGCAACAATTTCACAGAAAAAAATTGAAGTACACTCGTCCATACTTGATTGAACTTATGTTCTCAGACAGCATCCAAGTCTCAAATCTAACTCTCCTTAATTCCCCATCATGGAATGTTCATCCTGTTTACAGCAGCAACATTATTATACAAGGTATCACAATCATTGCTCCTATCTCATCTCCTAACACTGATGGTATCAACCCAGATTCTTGCACAAATACAAAAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTTGCTGTGAAGAGTGGATGGGATGAGTATGGCATCAAATTTGGCAGGCCTACAAAACAACTAGTAATCAGAAGACTAACATGCATTTCACCATTCAGTGCAACCATTGCCTTAGGAAGTGAGATGTCAGGAGGGATACAAGACGTCAGAGCCGAAGACATCACAGCCATTCGAACAGAATCGGGTGTCAGAATCAAAACAGCTGTTGGTAGAGGAGGGTATGTGAAGGACATATATGTAAAAAGATTTACCATGCATACTATGAAATGGGCATTTAAGATGACAGGTGATTATAATTCACATGCTGATACTCACTTTGACCCTAATGCTTTGCCTGAGATTGCAAATATCAACTATAGAGATGTTGTGGCTGAGAATGTTACCATAGCAGCTAGGTTTCAAGGAATCTCTAATGACCCTTTCAAGGGAATTTGTATTGCAAATGTGACACTAGGGATGGCTGTTAAGGCCAAGAAAAGGTCATGGACATGCACTGATATTGAAGGGATGACTAGCGGTGTGACGCCTCCGCCTTGTGATCTGTTGCCTGATCAAGGGCCTGAGAAAATCGGGGCATGTGATTTCCCAGCAGAGAGTTTACCTATTGATAACTTGGAGCTTAAGAAGTGTAGTTACAGCATGAAATATGTAATGTAG
Protein sequence

>Msa1028420

MAMLILQVLKIIFALFVVTLVYPERAESRKAKIVTTSFEYNGINCRAHSASLTDFGGVGDGNTSNTKAFESAISHLSQYGSQGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPALEPLPSYGRGRDAPAGRFRSFIFGTNLTDVIVTGENGTIDGQGAFWWQQFHRKKLKYTRPYLIELMFSDSIQVSNLTLLNSPSWNVHPVYSSNIIIQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGRPTKQLVIRRLTCISPFSATIALGSEMSGGIQDVRAEDITAIRTESGVRIKTAVGRGGYVKDIYVKRFTMHTMKWAFKMTGDYNSHADTHFDPNALPEIANINYRDVVAENVTIAARFQGISNDPFKGICIANVTLGMAVKAKKRSWTCTDIEGMTSGVTPPPCDLLPDQGPEKIGACDFPAESLPIDNLELKKCSYSMKYVM*