Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016680 | sp|F4JAA5|SKI2_ARATH | 72.973 | 74 | 20 | 0 | 8 | 81 | 1185 | 1258 | 3.46e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016680 | Msa0020930 | 0.804892 | 1.737002e-49 | -8.615850e-47 |
| Msa0016680 | Msa0110340 | 0.854988 | 8.528819e-62 | -8.615850e-47 |
| Msa0016680 | Msa0114060 | 0.809984 | 1.443719e-50 | -8.615850e-47 |
| Msa0016680 | Msa0220580 | 0.809915 | 1.494621e-50 | -8.615850e-47 |
| Msa0016680 | Msa0796700 | 0.801581 | 8.417556e-49 | -8.615850e-47 |
| Msa0016680 | Msa1228590 | 0.810415 | 1.166088e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016680 | MtrunA17_Chr3g0103751 | 91.892 | 74 | 6 | 0 | 8 | 81 | 1172 | 1245 | 1.82e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016680 | AT3G46960.3 | 72.973 | 74 | 20 | 0 | 8 | 81 | 1057 | 1130 | 2.65e-31 | 114 |
| Msa0016680 | AT3G46960.2 | 72.973 | 74 | 20 | 0 | 8 | 81 | 1048 | 1121 | 2.81e-31 | 114 |
| Msa0016680 | AT3G46960.1 | 72.973 | 74 | 20 | 0 | 8 | 81 | 1185 | 1258 | 3.52e-31 | 114 |
Find 30 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCAAAGGTGTACATTT+TGG | 0.140890 | 1_1:-27740972 | Msa0016680:three_prime_UTR |
| CTTCACTCTTCAGGGCTTAT+TGG | 0.227219 | 1_1:+27741113 | None:intergenic |
| GGGCATACTCTTCACTCTTC+AGG | 0.230925 | 1_1:+27741104 | None:intergenic |
| CAATCAAGTAAAGTTGTATT+TGG | 0.256274 | 1_1:+27741010 | None:intergenic |
| TATTTCTTAGTTAGTACATT+TGG | 0.288529 | 1_1:-27743250 | Msa0016680:five_prime_UTR |
| GCCCAAGAAAATATCAAATT+TGG | 0.312676 | 1_1:-27741085 | Msa0016680:three_prime_UTR |
| TTCACTCTTCAGGGCTTATT+GGG | 0.325955 | 1_1:+27741114 | None:intergenic |
| GGCATACTCTTCACTCTTCA+GGG | 0.347658 | 1_1:+27741105 | None:intergenic |
| ATTTCTTAGTTAGTACATTT+GGG | 0.370811 | 1_1:-27743249 | Msa0016680:five_prime_UTR |
| ATTAACACTGCTGCTTCTTC+TGG | 0.386800 | 1_1:+27741438 | None:intergenic |
| CTGGTTCCAGTTCATCGAGC+TGG | 0.390858 | 1_1:+27741457 | None:intergenic |
| CTAAATTCTATTCATATGTT+AGG | 0.408564 | 1_1:+27740904 | None:intergenic |
| TGAGAACCAGCTCGATGAAC+TGG | 0.411981 | 1_1:-27741463 | Msa0016680:CDS |
| CGTTGAAGTGGTTTATGAAT+GGG | 0.412250 | 1_1:-27741059 | Msa0016680:three_prime_UTR |
| TCGTTGAAGTGGTTTATGAA+TGG | 0.458799 | 1_1:-27741060 | Msa0016680:three_prime_UTR |
| GCTCGGATGCATTCTTCTGC+TGG | 0.462768 | 1_1:+27741400 | None:intergenic |
| AAGTGGTTTATGAATGGGAA+AGG | 0.511580 | 1_1:-27741054 | Msa0016680:three_prime_UTR |
| CAAATTTGGTCTCGTTGAAG+TGG | 0.531565 | 1_1:-27741071 | Msa0016680:three_prime_UTR |
| TGGACAACCACGACACTTGA+CGG | 0.534623 | 1_1:+27743221 | None:intergenic |
| GATTGCAAAAGCTATGAAGC+TGG | 0.548585 | 1_1:-27742463 | Msa0016680:exon |
| GGATTCGCCGTCAAGTGTCG+TGG | 0.582573 | 1_1:-27743228 | Msa0016680:five_prime_UTR |
| CTGTCTTACAGCACATCTCA+AGG | 0.588076 | 1_1:-27743187 | Msa0016680:intron |
| CCTAGGTGTGAGTGATGGCT+CGG | 0.612561 | 1_1:+27741383 | None:intergenic |
| GACAGCCTAGGTGTGAGTGA+TGG | 0.618203 | 1_1:+27741378 | None:intergenic |
| CCGAGCCATCACTCACACCT+AGG | 0.627548 | 1_1:-27741383 | Msa0016680:CDS |
| CACAAAATAGCTATACGACT+AGG | 0.641406 | 1_1:-27741161 | Msa0016680:CDS |
| GGGCATTACGTACCTCCTCA+CGG | 0.645455 | 1_1:+27742436 | None:intergenic |
| GTAAGACAGTTGAAGAAGTG+TGG | 0.662636 | 1_1:+27743201 | None:intergenic |
| GAAGCTGGAGTTCCGTGAGG+AGG | 0.674460 | 1_1:-27742448 | Msa0016680:intron |
| TATGAAGCTGGAGTTCCGTG+AGG | 0.748586 | 1_1:-27742451 | Msa0016680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTTGTATTTGAATTTT+CGG | - | chr1_1:27740995-27741014 | Msa0016680:three_prime_UTR | 15.0% |
| !!! | ATGATTAGGTTTTTTTTTTT+TGG | - | chr1_1:27741441-27741460 | Msa0016680:CDS | 15.0% |
| !! | AATAAAAAAAAAAACTAGCT+AGG | + | chr1_1:27741577-27741596 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTGTTTGGAAT+TGG | - | chr1_1:27741780-27741799 | Msa0016680:intron | 15.0% |
| !!! | TATAATTTTTGTTTGGAATT+GGG | - | chr1_1:27741781-27741800 | Msa0016680:intron | 15.0% |
| !!! | GATTAAACTATTTTAAGTAA+AGG | - | chr1_1:27742019-27742038 | Msa0016680:intron | 15.0% |
| !! | AAGTTAAAAGAAAATGAAAA+TGG | + | chr1_1:27742332-27742351 | None:intergenic | 15.0% |
| !! | GTTATAAAAAAAATTAAGAG+GGG | + | chr1_1:27742828-27742847 | None:intergenic | 15.0% |
| !! | CGTTATAAAAAAAATTAAGA+GGG | + | chr1_1:27742829-27742848 | None:intergenic | 15.0% |
| !! | ACGTTATAAAAAAAATTAAG+AGG | + | chr1_1:27742830-27742849 | None:intergenic | 15.0% |
| !! | TATTTCTTAGTTAGTACATT+TGG | - | chr1_1:27740851-27740870 | Msa0016680:three_prime_UTR | 20.0% |
| !! | ATTTCTTAGTTAGTACATTT+GGG | - | chr1_1:27740852-27740871 | Msa0016680:three_prime_UTR | 20.0% |
| !! | ATGAACAATAAGATTAACTT+TGG | + | chr1_1:27741024-27741043 | None:intergenic | 20.0% |
| !!! | GTTAATCAATTTTTTTCTCA+AGG | - | chr1_1:27741158-27741177 | Msa0016680:CDS | 20.0% |
| !! | CAAAAAAATGTTAATCATAC+AGG | + | chr1_1:27741468-27741487 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTCTTCTGAAAA+AGG | - | chr1_1:27741607-27741626 | Msa0016680:intron | 20.0% |
| !!! | CTGAACATATAATTTTTGTT+TGG | - | chr1_1:27741774-27741793 | Msa0016680:intron | 20.0% |
| !! | AAGTAAACAATTCAATAAGA+AGG | + | chr1_1:27742133-27742152 | None:intergenic | 20.0% |
| !!! | CTATATTCATTTTATGTGTT+TGG | - | chr1_1:27742580-27742599 | Msa0016680:intron | 20.0% |
| !!! | ACCAAATTTGATATTTTCTT+GGG | + | chr1_1:27743020-27743039 | None:intergenic | 20.0% |
| !! | CTAAATTCTATTCATATGTT+AGG | + | chr1_1:27743200-27743219 | None:intergenic | 20.0% |
| ! | ATTAAAACTAAGAGTAACAC+AGG | + | chr1_1:27740956-27740975 | None:intergenic | 25.0% |
| ! | TCTGTTAATCAATTGGTTAA+AGG | - | chr1_1:27741090-27741109 | Msa0016680:three_prime_UTR | 25.0% |
| ! | TTAATCAATTGGTTAAAGGA+AGG | - | chr1_1:27741094-27741113 | Msa0016680:three_prime_UTR | 25.0% |
| ! | TAATCAATTGGTTAAAGGAA+GGG | - | chr1_1:27741095-27741114 | Msa0016680:three_prime_UTR | 25.0% |
| ! | GAGAAAAAAATTGATTAACG+CGG | + | chr1_1:27741157-27741176 | None:intergenic | 25.0% |
| !! | ATATTGCCAAACTATTTTGT+AGG | - | chr1_1:27741337-27741356 | Msa0016680:intron | 25.0% |
| !!! | ATTGTGTTTTTGTTTTAGTC+TGG | - | chr1_1:27741886-27741905 | Msa0016680:intron | 25.0% |
| !!! | TTGTAGATGTTGTTTTTACT+TGG | - | chr1_1:27741932-27741951 | Msa0016680:intron | 25.0% |
| ! | CAATCCTAACATATTTGTAT+AGG | - | chr1_1:27742374-27742393 | Msa0016680:intron | 25.0% |
| !! | GACCAAATTTGATATTTTCT+TGG | + | chr1_1:27743021-27743040 | None:intergenic | 25.0% |
| ! | CAATCAAGTAAAGTTGTATT+TGG | + | chr1_1:27743094-27743113 | None:intergenic | 25.0% |
| !!! | AGCATAGTTTTTAAGATCAA+AGG | - | chr1_1:27743117-27743136 | Msa0016680:intron | 25.0% |
| ATATATCCATGTGTATGTGA+TGG | - | chr1_1:27741054-27741073 | Msa0016680:three_prime_UTR | 30.0% | |
| ACTTGTCTCTGTTAATCAAT+TGG | - | chr1_1:27741083-27741102 | Msa0016680:three_prime_UTR | 30.0% | |
| AATCAATTGGTTAAAGGAAG+GGG | - | chr1_1:27741096-27741115 | Msa0016680:exon | 30.0% | |
| !! | GAATTTGTTAACAGTCTAGA+TGG | - | chr1_1:27741119-27741138 | Msa0016680:CDS | 30.0% |
| TTTATAGAACTTTGTGTGTG+TGG | - | chr1_1:27741230-27741249 | Msa0016680:intron | 30.0% | |
| AGCATTCCTACAAAATAGTT+TGG | + | chr1_1:27741346-27741365 | None:intergenic | 30.0% | |
| GAATTAGAGAGAAGAATCAA+AGG | + | chr1_1:27741373-27741392 | None:intergenic | 30.0% | |
| TATATGTTCAGAATCACAGT+TGG | + | chr1_1:27741765-27741784 | None:intergenic | 30.0% | |
| ACTGATGTGTAGAAAGAAAA+AGG | - | chr1_1:27741837-27741856 | Msa0016680:intron | 30.0% | |
| CTGATGTGTAGAAAGAAAAA+GGG | - | chr1_1:27741838-27741857 | Msa0016680:intron | 30.0% | |
| ! | TGGTTGTTGTTCTTATTGAA+AGG | - | chr1_1:27741906-27741925 | Msa0016680:intron | 30.0% |
| ! | GATATGAAGTGTTCTAATTC+CGG | - | chr1_1:27741972-27741991 | Msa0016680:intron | 30.0% |
| CAAGATGAAAATGACAGTAA+TGG | - | chr1_1:27742056-27742075 | Msa0016680:intron | 30.0% | |
| TTCATCGTGTAAAATTTGTG+TGG | - | chr1_1:27742165-27742184 | Msa0016680:intron | 30.0% | |
| AAACAAGAATTCAAGTATCC+TGG | + | chr1_1:27742210-27742229 | None:intergenic | 30.0% | |
| ATCATCGTTCAATTGGTTAA+AGG | - | chr1_1:27742269-27742288 | Msa0016680:intron | 30.0% | |
| TTCAATTGGTTAAAGGAAGA+GGG | - | chr1_1:27742276-27742295 | Msa0016680:intron | 30.0% | |
| !! | TAGGATTGTGTAAAAGTGTT+GGG | + | chr1_1:27742362-27742381 | None:intergenic | 30.0% |
| ! | TTAGGATTGTGTAAAAGTGT+TGG | + | chr1_1:27742363-27742382 | None:intergenic | 30.0% |
| AGTGCCTATACAAATATGTT+AGG | + | chr1_1:27742381-27742400 | None:intergenic | 30.0% | |
| AACATATTTGTATAGGCACT+AGG | - | chr1_1:27742381-27742400 | Msa0016680:intron | 30.0% | |
| TGTGTTCGGTTAAAAGTAAT+AGG | - | chr1_1:27742407-27742426 | Msa0016680:intron | 30.0% | |
| TTCTGATTGGAATCAACATA+TGG | - | chr1_1:27742888-27742907 | Msa0016680:intron | 30.0% | |
| GCCCAAGAAAATATCAAATT+TGG | - | chr1_1:27743016-27743035 | Msa0016680:intron | 30.0% | |
| !! | AAGATCAAAGGTGTACATTT+TGG | - | chr1_1:27743129-27743148 | Msa0016680:intron | 30.0% |
| !! | AGATCAAAGGTGTACATTTT+GGG | - | chr1_1:27743130-27743149 | Msa0016680:intron | 30.0% |
| AGTAACACAGGTAAAGAGAA+GGG | + | chr1_1:27740944-27740963 | None:intergenic | 35.0% | |
| ATCAATTGGTTAAAGGAAGG+GGG | - | chr1_1:27741097-27741116 | Msa0016680:exon | 35.0% | |
| ACAAGAATAAGATCGCGTTT+AGG | + | chr1_1:27741492-27741511 | None:intergenic | 35.0% | |
| ! | TTCATGGGAGGAACAATTTT+TGG | + | chr1_1:27741693-27741712 | None:intergenic | 35.0% |
| !!! | CAGTTGCTTTTGCAAAATCA+CGG | - | chr1_1:27741720-27741739 | Msa0016680:intron | 35.0% |
| CTTTGACATCATCGTTCAAT+TGG | - | chr1_1:27742262-27742281 | Msa0016680:intron | 35.0% | |
| GTTCAATTGGTTAAAGGAAG+AGG | - | chr1_1:27742275-27742294 | Msa0016680:intron | 35.0% | |
| !!! | CATAGTCTAATGCCACTTTT+CGG | - | chr1_1:27742480-27742499 | Msa0016680:intron | 35.0% |
| AATCAGAATTTCAGAGAAGC+AGG | + | chr1_1:27742876-27742895 | None:intergenic | 35.0% | |
| !! | TGCTTCTCTGAAATTCTGAT+TGG | - | chr1_1:27742875-27742894 | Msa0016680:intron | 35.0% |
| CACAAAATAGCTATACGACT+AGG | - | chr1_1:27742940-27742959 | Msa0016680:intron | 35.0% | |
| TCGTTGAAGTGGTTTATGAA+TGG | - | chr1_1:27743041-27743060 | Msa0016680:intron | 35.0% | |
| CGTTGAAGTGGTTTATGAAT+GGG | - | chr1_1:27743042-27743061 | Msa0016680:intron | 35.0% | |
| AAGTGGTTTATGAATGGGAA+AGG | - | chr1_1:27743047-27743066 | Msa0016680:intron | 35.0% | |
| !! | GATCAAAGGTGTACATTTTG+GGG | - | chr1_1:27743131-27743150 | Msa0016680:intron | 35.0% |
| GTAAGACAGTTGAAGAAGTG+TGG | + | chr1_1:27740903-27740922 | None:intergenic | 40.0% | |
| GAGTAACACAGGTAAAGAGA+AGG | + | chr1_1:27740945-27740964 | None:intergenic | 40.0% | |
| TGAAGACCATCACATACACA+TGG | + | chr1_1:27741063-27741082 | None:intergenic | 40.0% | |
| CTATCTAATGCAAGTGAGTG+TGG | - | chr1_1:27741256-27741275 | Msa0016680:intron | 40.0% | |
| ACGCGTCAAGTTCTATGATT+AGG | - | chr1_1:27741427-27741446 | Msa0016680:CDS | 40.0% | |
| GATTGCAAAAGCTATGAAGC+TGG | - | chr1_1:27741638-27741657 | Msa0016680:intron | 40.0% | |
| !!! | TGGGAGGAACAATTTTTGGT+CGG | + | chr1_1:27741689-27741708 | None:intergenic | 40.0% |
| GAAAAAGGGATGAGCTTGAT+TGG | - | chr1_1:27741852-27741871 | Msa0016680:intron | 40.0% | |
| CCTACAAGAACAACATCAAC+CGG | + | chr1_1:27741994-27742013 | None:intergenic | 40.0% | |
| AAGAATTCAAGTATCCTGGC+CGG | + | chr1_1:27742206-27742225 | None:intergenic | 40.0% | |
| GCAAAATACCAACCGAAAAG+TGG | + | chr1_1:27742495-27742514 | None:intergenic | 40.0% | |
| ! | ATTAACACTGCTGCTTCTTC+TGG | + | chr1_1:27742666-27742685 | None:intergenic | 40.0% |
| !!! | TTTTTTGCATCAGACAGCCT+AGG | + | chr1_1:27742738-27742757 | None:intergenic | 40.0% |
| GGCTGTCTGATGCAAAAAAT+AGG | - | chr1_1:27742739-27742758 | Msa0016680:intron | 40.0% | |
| TTCACTCTTCAGGGCTTATT+GGG | + | chr1_1:27742990-27743009 | None:intergenic | 40.0% | |
| CAAATTTGGTCTCGTTGAAG+TGG | - | chr1_1:27743030-27743049 | Msa0016680:intron | 40.0% | |
| ! | CACCAATACATTTTTCACCG+AGG | + | chr1_1:27743157-27743176 | None:intergenic | 40.0% |
| CTGTCTTACAGCACATCTCA+AGG | - | chr1_1:27740914-27740933 | Msa0016680:three_prime_UTR | 45.0% | |
| !!! | GGGAGGAACAATTTTTGGTC+GGG | + | chr1_1:27741688-27741707 | None:intergenic | 45.0% |
| AGCAACTGAGCTCGATTCAT+GGG | + | chr1_1:27741708-27741727 | None:intergenic | 45.0% | |
| AAGCAACTGAGCTCGATTCA+TGG | + | chr1_1:27741709-27741728 | None:intergenic | 45.0% | |
| CAGTTGGTTAGCATCACTGT+AGG | + | chr1_1:27741749-27741768 | None:intergenic | 45.0% | |
| ! | CCGGTTGATGTTGTTCTTGT+AGG | - | chr1_1:27741991-27742010 | Msa0016680:intron | 45.0% |
| CCAGCACTTAGCTTCTTAAC+AGG | + | chr1_1:27742086-27742105 | None:intergenic | 45.0% | |
| CCTGTTAAGAAGCTAAGTGC+TGG | - | chr1_1:27742083-27742102 | Msa0016680:intron | 45.0% | |
| AGAATTCAAGTATCCTGGCC+GGG | + | chr1_1:27742205-27742224 | None:intergenic | 45.0% | |
| TAGGCACTAGGCAATGTGTT+CGG | - | chr1_1:27742393-27742412 | Msa0016680:intron | 45.0% | |
| !!! | GTCTAATGCCACTTTTCGGT+TGG | - | chr1_1:27742484-27742503 | Msa0016680:intron | 45.0% |
| CTTCACTCTTCAGGGCTTAT+TGG | + | chr1_1:27742991-27743010 | None:intergenic | 45.0% | |
| GGCATACTCTTCACTCTTCA+GGG | + | chr1_1:27742999-27743018 | None:intergenic | 45.0% | |
| GGCCTCGGTGAAAAATGTAT+TGG | - | chr1_1:27743152-27743171 | Msa0016680:intron | 45.0% | |
| TGGACAACCACGACACTTGA+CGG | + | chr1_1:27740883-27740902 | None:intergenic | 50.0% | |
| TATGAAGCTGGAGTTCCGTG+AGG | - | chr1_1:27741650-27741669 | Msa0016680:intron | 50.0% | |
| AACTGAGCTCGATTCATGGG+AGG | + | chr1_1:27741705-27741724 | None:intergenic | 50.0% | |
| AATTCAAGTATCCTGGCCGG+GGG | + | chr1_1:27742203-27742222 | None:intergenic | 50.0% | |
| GAATTCAAGTATCCTGGCCG+GGG | + | chr1_1:27742204-27742223 | None:intergenic | 50.0% | |
| TGAGAACCAGCTCGATGAAC+TGG | - | chr1_1:27742638-27742657 | Msa0016680:intron | 50.0% | |
| GGGCATACTCTTCACTCTTC+AGG | + | chr1_1:27743000-27743019 | None:intergenic | 50.0% | |
| !!! | AGGTGTACATTTTGGGGCCT+CGG | - | chr1_1:27743137-27743156 | Msa0016680:intron | 50.0% |
| GTGAGTGTGGTGTGTGTGTG+TGG | - | chr1_1:27741269-27741288 | Msa0016680:intron | 55.0% | |
| GGGCATTACGTACCTCCTCA+CGG | + | chr1_1:27741668-27741687 | None:intergenic | 55.0% | |
| GGCGAGTTGCGTCTTCACAA+AGG | - | chr1_1:27742104-27742123 | Msa0016680:intron | 55.0% | |
| CTGGTTCCAGTTCATCGAGC+TGG | + | chr1_1:27742647-27742666 | None:intergenic | 55.0% | |
| GCTCGGATGCATTCTTCTGC+TGG | + | chr1_1:27742704-27742723 | None:intergenic | 55.0% | |
| CCTAGGTGTGAGTGATGGCT+CGG | + | chr1_1:27742721-27742740 | None:intergenic | 55.0% | |
| GACAGCCTAGGTGTGAGTGA+TGG | + | chr1_1:27742726-27742745 | None:intergenic | 55.0% | |
| ! | GGATTCGCCGTCAAGTGTCG+TGG | - | chr1_1:27740873-27740892 | Msa0016680:three_prime_UTR | 60.0% |
| GAAGCTGGAGTTCCGTGAGG+AGG | - | chr1_1:27741653-27741672 | Msa0016680:intron | 60.0% | |
| AAGTATCCTGGCCGGGGGTA+GGG | + | chr1_1:27742198-27742217 | None:intergenic | 60.0% | |
| CCGAGCCATCACTCACACCT+AGG | - | chr1_1:27742718-27742737 | Msa0016680:intron | 60.0% | |
| AGTATCCTGGCCGGGGGTAG+GGG | + | chr1_1:27742197-27742216 | None:intergenic | 65.0% | |
| CAAGTATCCTGGCCGGGGGT+AGG | + | chr1_1:27742199-27742218 | None:intergenic | 65.0% | |
| GTGGCACTTGCCCCTACCCC+CGG | - | chr1_1:27742184-27742203 | Msa0016680:intron | 70.0% | |
| ACTTGCCCCTACCCCCGGCC+AGG | - | chr1_1:27742189-27742208 | Msa0016680:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27740834 | 27743289 | 27740834 | ID=Msa0016680;Name=Msa0016680 |
| chr1_1 | mRNA | 27740834 | 27743289 | 27740834 | ID=Msa0016680-mRNA-1;Parent=Msa0016680;Name=Msa0016680-mRNA-1;_AED=0.32;_eAED=0.32;_QI=124|0.66|0.75|1|0.66|0.5|4|281|81 |
| chr1_1 | exon | 27740834 | 27741187 | 27740834 | ID=Msa0016680-mRNA-1:exon:9308;Parent=Msa0016680-mRNA-1 |
| chr1_1 | exon | 27741363 | 27741511 | 27741363 | ID=Msa0016680-mRNA-1:exon:9307;Parent=Msa0016680-mRNA-1 |
| chr1_1 | exon | 27742449 | 27742494 | 27742449 | ID=Msa0016680-mRNA-1:exon:9306;Parent=Msa0016680-mRNA-1 |
| chr1_1 | exon | 27743188 | 27743289 | 27743188 | ID=Msa0016680-mRNA-1:exon:9305;Parent=Msa0016680-mRNA-1 |
| chr1_1 | five_prime_UTR | 27743188 | 27743289 | 27743188 | ID=Msa0016680-mRNA-1:five_prime_utr;Parent=Msa0016680-mRNA-1 |
| chr1_1 | five_prime_UTR | 27742473 | 27742494 | 27742473 | ID=Msa0016680-mRNA-1:five_prime_utr;Parent=Msa0016680-mRNA-1 |
| chr1_1 | CDS | 27742449 | 27742472 | 27742449 | ID=Msa0016680-mRNA-1:cds;Parent=Msa0016680-mRNA-1 |
| chr1_1 | CDS | 27741363 | 27741511 | 27741363 | ID=Msa0016680-mRNA-1:cds;Parent=Msa0016680-mRNA-1 |
| chr1_1 | CDS | 27741115 | 27741187 | 27741115 | ID=Msa0016680-mRNA-1:cds;Parent=Msa0016680-mRNA-1 |
| chr1_1 | three_prime_UTR | 27740834 | 27741114 | 27740834 | ID=Msa0016680-mRNA-1:three_prime_utr;Parent=Msa0016680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
