Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110340 | MCH96087.1 | 77.778 | 90 | 13 | 1 | 25 | 107 | 29 | 118 | 1.84e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110340 | sp|F4JAA5|SKI2_ARATH | 63.333 | 90 | 26 | 1 | 25 | 107 | 1169 | 1258 | 3.37e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110340 | A0A392N8G1 | 77.778 | 90 | 13 | 1 | 25 | 107 | 29 | 118 | 8.80e-40 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016680 | Msa0110340 | 0.854988 | 8.528819e-62 | -8.615850e-47 |
| Msa0110340 | Msa0114060 | 0.804331 | 2.273852e-49 | -8.615850e-47 |
| Msa0110340 | Msa1228590 | 0.814214 | 1.726658e-51 | -8.615850e-47 |
| Msa0110340 | Msa1420490 | 0.800787 | 1.223421e-48 | -8.615850e-47 |
| Msa0110340 | Msa1423390 | 0.800297 | 1.539718e-48 | -8.615850e-47 |
| Msa0110340 | Msa1440810 | 0.800959 | 1.128076e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110340 | MtrunA17_Chr3g0103751 | 78.889 | 90 | 12 | 1 | 25 | 107 | 1156 | 1245 | 1.89e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110340 | AT3G46960.2 | 63.333 | 90 | 26 | 1 | 25 | 107 | 1032 | 1121 | 2.75e-31 | 116 |
| Msa0110340 | AT3G46960.3 | 63.333 | 90 | 26 | 1 | 25 | 107 | 1041 | 1130 | 2.89e-31 | 115 |
| Msa0110340 | AT3G46960.1 | 63.333 | 90 | 26 | 1 | 25 | 107 | 1169 | 1258 | 3.42e-31 | 115 |
Find 29 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCAAAGGTGTACATTT+TGG | 0.140890 | 1_3:+23165673 | Msa0110340:three_prime_UTR |
| CTTCACTCTTCAGGGCTTAT+TGG | 0.227219 | 1_3:-23165532 | None:intergenic |
| GGGCATACTCTTCACTCTTC+AGG | 0.230925 | 1_3:-23165541 | None:intergenic |
| CAATCAAGTAAAGTTGTATT+TGG | 0.256274 | 1_3:-23165635 | None:intergenic |
| GCCCAAGAAAATATCAAATT+TGG | 0.312676 | 1_3:+23165560 | Msa0110340:three_prime_UTR |
| TTCACTCTTCAGGGCTTATT+GGG | 0.325955 | 1_3:-23165531 | None:intergenic |
| TCAAATGTCAATTAGGCTTA+AGG | 0.342343 | 1_3:+23163002 | Msa0110340:intron |
| GGCATACTCTTCACTCTTCA+GGG | 0.347658 | 1_3:-23165540 | None:intergenic |
| ATTAACACTGTTGCTTCTTC+TGG | 0.358110 | 1_3:-23165207 | None:intergenic |
| CTGGTTCCAGTTCATCGAGC+TGG | 0.390858 | 1_3:-23165188 | None:intergenic |
| CTAAATTCTATTCATATGTT+AGG | 0.408564 | 1_3:-23165741 | None:intergenic |
| TGAGAACCAGCTCGATGAAC+TGG | 0.411981 | 1_3:+23165182 | Msa0110340:CDS |
| CGTTGAAGTGGTTTATGAAT+GGG | 0.412250 | 1_3:+23165586 | Msa0110340:three_prime_UTR |
| CTAAACTTACAGGAAGAAAC+AGG | 0.444412 | 1_3:+23162204 | Msa0110340:intron |
| TCGTTGAAGTGGTTTATGAA+TGG | 0.458799 | 1_3:+23165585 | Msa0110340:three_prime_UTR |
| TGCTACTGAGATGCGAAAGA+AGG | 0.460175 | 1_3:+23162229 | Msa0110340:CDS |
| GCTCGGATGCATTCTTCTGC+TGG | 0.462768 | 1_3:-23165245 | None:intergenic |
| AAGTGGTTTATGAATGGGAA+AGG | 0.511580 | 1_3:+23165591 | Msa0110340:three_prime_UTR |
| CAAATTTGGTCTCGTTGAAG+TGG | 0.531565 | 1_3:+23165574 | Msa0110340:three_prime_UTR |
| TTTGTTATCGTACCATGCAT+TGG | 0.532067 | 1_3:-23160531 | None:intergenic |
| GAGATGCGAAAGAAGGGAGT+TGG | 0.540849 | 1_3:+23162236 | Msa0110340:CDS |
| GCTACTGAGATGCGAAAGAA+GGG | 0.574228 | 1_3:+23162230 | Msa0110340:CDS |
| TACACACCACTCTAAAGGGA+AGG | 0.581971 | 1_3:+23162282 | Msa0110340:CDS |
| AAAATACCTTCCCTTTAGAG+TGG | 0.611628 | 1_3:-23162288 | None:intergenic |
| CCTAGGTGTGAGTGATGGCT+CGG | 0.612561 | 1_3:-23165262 | None:intergenic |
| GACAGCCTAGGTGTGAGTGA+TGG | 0.618203 | 1_3:-23165267 | None:intergenic |
| TATGAGACGTTACCAATGCA+TGG | 0.624492 | 1_3:+23160519 | None:intergenic |
| CCGAGCCATCACTCACACCT+AGG | 0.627548 | 1_3:+23165262 | Msa0110340:CDS |
| CACAAAATAGCTATACGACT+AGG | 0.641406 | 1_3:+23165484 | Msa0110340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATTTCATAATATATT+TGG | + | chr1_3:23162059-23162078 | Msa0110340:intron | 10.0% |
| !!! | ATATAATGAGAAATTTTAAT+TGG | + | chr1_3:23162450-23162469 | Msa0110340:intron | 10.0% |
| !! | TTTGACAAAAAAAAAAAATT+AGG | - | chr1_3:23162987-23163006 | None:intergenic | 10.0% |
| !! | ATTAGTTGGATTATATATAA+AGG | + | chr1_3:23160991-23161010 | Msa0110340:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr1_3:23161452-23161471 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_3:23161555-23161574 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_3:23161579-23161598 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_3:23161578-23161597 | Msa0110340:intron | 15.0% |
| !! | TCAAACATGATTAAAAAATT+TGG | - | chr1_3:23161967-23161986 | None:intergenic | 15.0% |
| !! | ATCAAAAGATATAAGATTTA+AGG | - | chr1_3:23162184-23162203 | None:intergenic | 15.0% |
| !!! | ACTATTTTTCAACTAAAAAT+TGG | - | chr1_3:23163091-23163110 | None:intergenic | 15.0% |
| !!! | AATACTTGTATTTGAATTTT+CGG | + | chr1_3:23163537-23163556 | Msa0110340:intron | 15.0% |
| !!! | TGATTAGGTTTTTTTTTTTT+TGG | + | chr1_3:23163985-23164004 | Msa0110340:intron | 15.0% |
| !! | TAATAAAAAAAAAACTAGCT+AGG | - | chr1_3:23164121-23164140 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTGTTTGGAAT+TGG | + | chr1_3:23164323-23164342 | Msa0110340:intron | 15.0% |
| !!! | TATAATTTTTGTTTGGAATT+GGG | + | chr1_3:23164324-23164343 | Msa0110340:intron | 15.0% |
| !!! | GATTAAACTATTTTAAGTAA+AGG | + | chr1_3:23164563-23164582 | Msa0110340:intron | 15.0% |
| !! | AAGTTAAAAGAAAATGAAAA+TGG | - | chr1_3:23164876-23164895 | None:intergenic | 15.0% |
| !! | GTTATAAAAAAAATTAAGAG+GGG | - | chr1_3:23165372-23165391 | None:intergenic | 15.0% |
| !! | CGTTATAAAAAAAATTAAGA+GGG | - | chr1_3:23165373-23165392 | None:intergenic | 15.0% |
| !! | ACGTTATAAAAAAAATTAAG+AGG | - | chr1_3:23165374-23165393 | None:intergenic | 15.0% |
| !! | TTGGATTATATATAAAGGAT+AGG | + | chr1_3:23160996-23161015 | Msa0110340:intron | 20.0% |
| !!! | AATGAATAAGGGTATAATAA+TGG | + | chr1_3:23161211-23161230 | Msa0110340:intron | 20.0% |
| !!! | GTATTTTAATCAATATTGCA+TGG | + | chr1_3:23161331-23161350 | Msa0110340:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_3:23161492-23161511 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_3:23161569-23161588 | Msa0110340:intron | 20.0% |
| !! | TAAGCTATGATTAGATATAA+GGG | + | chr1_3:23161772-23161791 | Msa0110340:intron | 20.0% |
| !! | TAATGGTGTAGTAATATATT+TGG | + | chr1_3:23162030-23162049 | Msa0110340:intron | 20.0% |
| !!! | TCTTATAATTGGTTTTCTTA+TGG | + | chr1_3:23162388-23162407 | Msa0110340:intron | 20.0% |
| !! | TTATATCTTCATGTCTTAAA+TGG | - | chr1_3:23162436-23162455 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAATAACAGTTT+AGG | - | chr1_3:23162807-23162826 | None:intergenic | 20.0% |
| !!! | GAATTTTCTTAATATTACCA+AGG | - | chr1_3:23162870-23162889 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAATGTCAATT+AGG | + | chr1_3:23162995-23163014 | Msa0110340:intron | 20.0% |
| !! | AGCTTAAACTTTGTAAAAAT+AGG | + | chr1_3:23163184-23163203 | Msa0110340:intron | 20.0% |
| !! | TATTTCTTAGTTAGTACATT+TGG | + | chr1_3:23163393-23163412 | Msa0110340:intron | 20.0% |
| !! | ATTTCTTAGTTAGTACATTT+GGG | + | chr1_3:23163394-23163413 | Msa0110340:intron | 20.0% |
| !! | ATGAACAATAAGATTAACTT+TGG | - | chr1_3:23163566-23163585 | None:intergenic | 20.0% |
| !!! | GTTAATCAATTTTTTTCTCA+AGG | + | chr1_3:23163700-23163719 | Msa0110340:intron | 20.0% |
| !! | CAAAAAAATGTTAATCATAC+AGG | - | chr1_3:23164012-23164031 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTCTTCTGAAAA+AGG | + | chr1_3:23164150-23164169 | Msa0110340:intron | 20.0% |
| !!! | CTGAACATATAATTTTTGTT+TGG | + | chr1_3:23164317-23164336 | Msa0110340:intron | 20.0% |
| !! | AAGTAAACAATTCAATAAGA+AGG | - | chr1_3:23164677-23164696 | None:intergenic | 20.0% |
| !!! | CTATATTCATTTTATGTGTT+TGG | + | chr1_3:23165124-23165143 | Msa0110340:intron | 20.0% |
| !!! | ACCAAATTTGATATTTTCTT+GGG | - | chr1_3:23165564-23165583 | None:intergenic | 20.0% |
| !! | CTAAATTCTATTCATATGTT+AGG | - | chr1_3:23165744-23165763 | None:intergenic | 20.0% |
| ! | TTAGAAATTGAATAGAGTCA+TGG | - | chr1_3:23160576-23160595 | None:intergenic | 25.0% |
| ! | ATAAAAACTAAGTTACAGCA+TGG | + | chr1_3:23160698-23160717 | Msa0110340:intron | 25.0% |
| ! | TAAAAACTAAGTTACAGCAT+GGG | + | chr1_3:23160699-23160718 | Msa0110340:intron | 25.0% |
| ! | AACTAATTGCAATTAATTCC+TGG | - | chr1_3:23160978-23160997 | None:intergenic | 25.0% |
| ! | AGGAATTAATTGCAATTAGT+TGG | + | chr1_3:23160977-23160996 | Msa0110340:intron | 25.0% |
| ! | AAACGACAATAATTTAGAGA+CGG | - | chr1_3:23161067-23161086 | None:intergenic | 25.0% |
| !! | CTCTAAATTATTGTCGTTTA+AGG | + | chr1_3:23161068-23161087 | Msa0110340:intron | 25.0% |
| !!! | ATTGATTGTGTTGATTTCAA+TGG | + | chr1_3:23161116-23161135 | Msa0110340:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr1_3:23161168-23161187 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_3:23161169-23161188 | None:intergenic | 25.0% |
| ! | TGGATGAAATTCAATGAATA+AGG | + | chr1_3:23161199-23161218 | Msa0110340:intron | 25.0% |
| ! | GGATGAAATTCAATGAATAA+GGG | + | chr1_3:23161200-23161219 | Msa0110340:intron | 25.0% |
| ! | AAAAGTAATAAATGCTGCAT+TGG | + | chr1_3:23161237-23161256 | Msa0110340:intron | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr1_3:23161612-23161631 | None:intergenic | 25.0% |
| ! | AGTAATTAACACTATTAGGA+GGG | + | chr1_3:23161688-23161707 | Msa0110340:intron | 25.0% |
| ! | GTAAGCTATGATTAGATATA+AGG | + | chr1_3:23161771-23161790 | Msa0110340:intron | 25.0% |
| ! | CTTGTATAATATAGCCAAAT+TGG | + | chr1_3:23161884-23161903 | Msa0110340:intron | 25.0% |
| !! | TTTTAATCATGTTTGATTCC+TGG | + | chr1_3:23161971-23161990 | Msa0110340:intron | 25.0% |
| ! | GAATTCCTCATATATATGTT+TGG | + | chr1_3:23162106-23162125 | Msa0110340:intron | 25.0% |
| !! | ATCTTTTGATCTAAACTTAC+AGG | + | chr1_3:23162194-23162213 | Msa0110340:intron | 25.0% |
| !! | TCTTAAATGGTTAACCATTT+TGG | - | chr1_3:23162423-23162442 | None:intergenic | 25.0% |
| ! | GATTAATTGAATTAAGAGCT+TGG | + | chr1_3:23162560-23162579 | Msa0110340:intron | 25.0% |
| ! | ATTTATATTGTTTCACAGGA+GGG | - | chr1_3:23162607-23162626 | None:intergenic | 25.0% |
| ! | AATTTATATTGTTTCACAGG+AGG | - | chr1_3:23162608-23162627 | None:intergenic | 25.0% |
| ! | CTCAATTTATATTGTTTCAC+AGG | - | chr1_3:23162611-23162630 | None:intergenic | 25.0% |
| ! | GATTCAAACCATATTCTTAA+GGG | - | chr1_3:23162683-23162702 | None:intergenic | 25.0% |
| ! | AGATTCAAACCATATTCTTA+AGG | - | chr1_3:23162684-23162703 | None:intergenic | 25.0% |
| !! | TATGCATAAAATTTGTTTCC+AGG | + | chr1_3:23163148-23163167 | Msa0110340:intron | 25.0% |
| !! | ATGCATAAAATTTGTTTCCA+GGG | + | chr1_3:23163149-23163168 | Msa0110340:intron | 25.0% |
| ! | TCTGTTAATCAATTGGTTAA+AGG | + | chr1_3:23163632-23163651 | Msa0110340:intron | 25.0% |
| ! | TTAATCAATTGGTTAAAGGA+AGG | + | chr1_3:23163636-23163655 | Msa0110340:intron | 25.0% |
| ! | TAATCAATTGGTTAAAGGAA+GGG | + | chr1_3:23163637-23163656 | Msa0110340:intron | 25.0% |
| ! | GAGAAAAAAATTGATTAACG+CGG | - | chr1_3:23163699-23163718 | None:intergenic | 25.0% |
| !! | ATATTGCCAAACTATTTTGT+AGG | + | chr1_3:23163880-23163899 | Msa0110340:intron | 25.0% |
| ! | AAATTAGAGAGAAGAATCAA+AGG | - | chr1_3:23163916-23163935 | None:intergenic | 25.0% |
| !!! | ATTGTGTTTTTGTTTTAGTC+TGG | + | chr1_3:23164430-23164449 | Msa0110340:intron | 25.0% |
| !!! | TTGTAGATGTTGTTTTTACT+TGG | + | chr1_3:23164476-23164495 | Msa0110340:intron | 25.0% |
| ! | CAATCCTAACATATTTGTAT+AGG | + | chr1_3:23164918-23164937 | Msa0110340:intron | 25.0% |
| !! | GACCAAATTTGATATTTTCT+TGG | - | chr1_3:23165565-23165584 | None:intergenic | 25.0% |
| ! | CAATCAAGTAAAGTTGTATT+TGG | - | chr1_3:23165638-23165657 | None:intergenic | 25.0% |
| !!! | AGCATAGTTTTTAAGATCAA+AGG | + | chr1_3:23165661-23165680 | Msa0110340:three_prime_UTR | 25.0% |
| ATATTATAGACAGAATGCCT+TGG | + | chr1_3:23160646-23160665 | Msa0110340:intron | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr1_3:23161165-23161184 | Msa0110340:intron | 30.0% | |
| AAGAGACTATTATTGTGAGA+CGG | + | chr1_3:23161303-23161322 | Msa0110340:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_3:23161660-23161679 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_3:23161661-23161680 | Msa0110340:intron | 30.0% |
| AGGGAGTAATTAACACTATT+AGG | + | chr1_3:23161684-23161703 | Msa0110340:intron | 30.0% | |
| GAGTAATTAACACTATTAGG+AGG | + | chr1_3:23161687-23161706 | Msa0110340:intron | 30.0% | |
| TAACCCTAATTCTAAATACC+TGG | - | chr1_3:23161747-23161766 | None:intergenic | 30.0% | |
| TAATATAGCCAAATTGGCAA+AGG | + | chr1_3:23161890-23161909 | Msa0110340:intron | 30.0% | |
| ! | AAAAGGATCGGATTTGTTTA+AGG | + | chr1_3:23161997-23162016 | Msa0110340:intron | 30.0% |
| TTCCTCATATATATGTTTGG+AGG | + | chr1_3:23162109-23162128 | Msa0110340:intron | 30.0% | |
| TACCTCCAAACATATATATG+AGG | - | chr1_3:23162114-23162133 | None:intergenic | 30.0% | |
| !! | TTGGTTTTCAGCAATCAAAA+GGG | + | chr1_3:23162255-23162274 | Msa0110340:CDS | 30.0% |
| TATGGCATTATATGCCAAAA+TGG | + | chr1_3:23162406-23162425 | Msa0110340:intron | 30.0% | |
| ! | GTCTAAATTTTGTAACACAC+TGG | + | chr1_3:23162652-23162671 | Msa0110340:intron | 30.0% |
| TGGTTTATCCCTTAAGAATA+TGG | + | chr1_3:23162672-23162691 | Msa0110340:intron | 30.0% | |
| AAAGTTTCAGCTCAGAAAAT+AGG | - | chr1_3:23162750-23162769 | None:intergenic | 30.0% | |
| TGGAATGTTCATAACTCATA+AGG | - | chr1_3:23162895-23162914 | None:intergenic | 30.0% | |
| !! | AATCAACCGGAATTTTGAAA+CGG | - | chr1_3:23162934-23162953 | None:intergenic | 30.0% |
| TGGCAGTTTAATTCATATCA+AGG | + | chr1_3:23162953-23162972 | Msa0110340:intron | 30.0% | |
| TCAAATGTCAATTAGGCTTA+AGG | + | chr1_3:23163002-23163021 | Msa0110340:intron | 30.0% | |
| ACATGAGATAGTATAGACAT+TGG | - | chr1_3:23163229-23163248 | None:intergenic | 30.0% | |
| ! | TCTCATGTTTGTGAACTTTT+AGG | + | chr1_3:23163241-23163260 | Msa0110340:intron | 30.0% |
| ATTAAAACCAAGAGTAACAC+TGG | - | chr1_3:23163498-23163517 | None:intergenic | 30.0% | |
| ATATATCCATGTGTATGTGA+TGG | + | chr1_3:23163596-23163615 | Msa0110340:intron | 30.0% | |
| ACTTGTCTCTGTTAATCAAT+TGG | + | chr1_3:23163625-23163644 | Msa0110340:intron | 30.0% | |
| AATCAATTGGTTAAAGGAAG+GGG | + | chr1_3:23163638-23163657 | Msa0110340:intron | 30.0% | |
| !! | GAATTTGTTAACAGTCTAGA+TGG | + | chr1_3:23163661-23163680 | Msa0110340:intron | 30.0% |
| TTTATACAACTTTGTGTGTG+TGG | + | chr1_3:23163771-23163790 | Msa0110340:intron | 30.0% | |
| AGCATTCCTACAAAATAGTT+TGG | - | chr1_3:23163889-23163908 | None:intergenic | 30.0% | |
| TATATGTTCAGAATCACAGT+TGG | - | chr1_3:23164308-23164327 | None:intergenic | 30.0% | |
| ACTGATGTGTAGAAAGAAAA+AGG | + | chr1_3:23164380-23164399 | Msa0110340:intron | 30.0% | |
| CTGATGTGTAGAAAGAAAAA+GGG | + | chr1_3:23164381-23164400 | Msa0110340:intron | 30.0% | |
| ! | TGGTTGTTGTTCTTATTGAA+AGG | + | chr1_3:23164450-23164469 | Msa0110340:intron | 30.0% |
| !! | GATAAGAAGTGTTCTAATTC+CGG | + | chr1_3:23164516-23164535 | Msa0110340:intron | 30.0% |
| CAAGATGAAAATGACAGTAA+TGG | + | chr1_3:23164600-23164619 | Msa0110340:intron | 30.0% | |
| TTCATCGTGTAAAATTTGTG+TGG | + | chr1_3:23164709-23164728 | Msa0110340:intron | 30.0% | |
| AAACAAGAATTCAAGTATCC+TGG | - | chr1_3:23164754-23164773 | None:intergenic | 30.0% | |
| ATCATCGTTCAATTGGTTAA+AGG | + | chr1_3:23164813-23164832 | Msa0110340:intron | 30.0% | |
| TTCAATTGGTTAAAGGAAGA+GGG | + | chr1_3:23164820-23164839 | Msa0110340:intron | 30.0% | |
| !! | TAGGATTGTGTAAAAGTGTT+GGG | - | chr1_3:23164906-23164925 | None:intergenic | 30.0% |
| ! | TTAGGATTGTGTAAAAGTGT+TGG | - | chr1_3:23164907-23164926 | None:intergenic | 30.0% |
| AGTGCCTATACAAATATGTT+AGG | - | chr1_3:23164925-23164944 | None:intergenic | 30.0% | |
| AACATATTTGTATAGGCACT+AGG | + | chr1_3:23164925-23164944 | Msa0110340:intron | 30.0% | |
| TGTGTTCGGTTAAAAGTAAT+AGG | + | chr1_3:23164951-23164970 | Msa0110340:intron | 30.0% | |
| TTCTGATTGGAATCAACATA+TGG | + | chr1_3:23165432-23165451 | Msa0110340:intron | 30.0% | |
| GCCCAAGAAAATATCAAATT+TGG | + | chr1_3:23165560-23165579 | Msa0110340:three_prime_UTR | 30.0% | |
| !! | AAGATCAAAGGTGTACATTT+TGG | + | chr1_3:23165673-23165692 | Msa0110340:three_prime_UTR | 30.0% |
| !! | AGATCAAAGGTGTACATTTT+GGG | + | chr1_3:23165674-23165693 | Msa0110340:three_prime_UTR | 30.0% |
| CATGGTACGATAACAAAGTA+TGG | + | chr1_3:23160537-23160556 | Msa0110340:intron | 35.0% | |
| CTGTCTATAATATACCCTCA+TGG | - | chr1_3:23160639-23160658 | None:intergenic | 35.0% | |
| TAAGTTACAGCATGGGAATA+TGG | + | chr1_3:23160706-23160725 | Msa0110340:intron | 35.0% | |
| CAAACCAAAATTCTTGGTCT+TGG | - | chr1_3:23160783-23160802 | None:intergenic | 35.0% | |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | + | chr1_3:23160781-23160800 | Msa0110340:intron | 35.0% |
| TGTGACCAAACCAAAATTCT+TGG | - | chr1_3:23160903-23160922 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr1_3:23160903-23160922 | Msa0110340:intron | 35.0% | |
| GACAATAATTTAGAGACGGA+GGG | - | chr1_3:23161063-23161082 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | + | chr1_3:23161179-23161198 | Msa0110340:intron | 35.0% | |
| CTTTAACCTTTCAGCTTACT+AGG | - | chr1_3:23161380-23161399 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr1_3:23161426-23161445 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr1_3:23161526-23161545 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr1_3:23161530-23161549 | None:intergenic | 35.0% |
| ATAAGGGATGAATCCAACAT+CGG | + | chr1_3:23161788-23161807 | Msa0110340:intron | 35.0% | |
| GAATCCTGATTATTGGTCAA+AGG | + | chr1_3:23161857-23161876 | Msa0110340:intron | 35.0% | |
| CAAACCTTTGACCAATAATC+AGG | - | chr1_3:23161864-23161883 | None:intergenic | 35.0% | |
| TGTTTGATTCCTGGACTAAA+AGG | + | chr1_3:23161980-23161999 | Msa0110340:intron | 35.0% | |
| ! | ATCGGATTTGTTTAAGGTAG+TGG | + | chr1_3:23162003-23162022 | Msa0110340:intron | 35.0% |
| CTAAACTTACAGGAAGAAAC+AGG | + | chr1_3:23162204-23162223 | Msa0110340:intron | 35.0% | |
| !!! | GTTGGTTTTCAGCAATCAAA+AGG | + | chr1_3:23162254-23162273 | Msa0110340:CDS | 35.0% |
| ! | CTTTTACACACCACTCTAAA+GGG | + | chr1_3:23162278-23162297 | Msa0110340:CDS | 35.0% |
| ! | AAAATACCTTCCCTTTAGAG+TGG | - | chr1_3:23162291-23162310 | None:intergenic | 35.0% |
| TTGGAATAGACGATGTATGA+AGG | - | chr1_3:23162323-23162342 | None:intergenic | 35.0% | |
| ATCAAGCATTTCGCATTTCT+TGG | - | chr1_3:23162342-23162361 | None:intergenic | 35.0% | |
| ! | GTTTTTGTATGTTCTCGTTG+TGG | + | chr1_3:23162364-23162383 | Msa0110340:intron | 35.0% |
| CTCGTTGTGGTTCTTATAAT+TGG | + | chr1_3:23162377-23162396 | Msa0110340:intron | 35.0% | |
| AAGAGTAGACCTTTCATATC+GGG | - | chr1_3:23162515-23162534 | None:intergenic | 35.0% | |
| CAAGAGTAGACCTTTCATAT+CGG | - | chr1_3:23162516-23162535 | None:intergenic | 35.0% | |
| GTCTACTCTTGGCTATTATA+CGG | + | chr1_3:23162525-23162544 | Msa0110340:intron | 35.0% | |
| !! | TTGAGTGTTGAGAACAATAG+AGG | + | chr1_3:23162626-23162645 | Msa0110340:intron | 35.0% |
| GTACTGTAATAGATAGACCT+TGG | + | chr1_3:23162850-23162869 | Msa0110340:intron | 35.0% | |
| CTTCTACCGTTTCAAAATTC+CGG | + | chr1_3:23162925-23162944 | Msa0110340:intron | 35.0% | |
| GTTTCAAAATTCCGGTTGAT+TGG | + | chr1_3:23162933-23162952 | Msa0110340:intron | 35.0% | |
| GAATTAAACTGCCAATCAAC+CGG | - | chr1_3:23162947-23162966 | None:intergenic | 35.0% | |
| !! | TTTGTTTCCAGGGTATTGAT+AGG | + | chr1_3:23163159-23163178 | Msa0110340:intron | 35.0% |
| ! | ATAGACATTGGTTAGACACA+TGG | - | chr1_3:23163217-23163236 | None:intergenic | 35.0% |
| AGTAACACTGGTAAAGAGAA+GGG | - | chr1_3:23163486-23163505 | None:intergenic | 35.0% | |
| ATCAATTGGTTAAAGGAAGG+GGG | + | chr1_3:23163639-23163658 | Msa0110340:intron | 35.0% | |
| ! | TTCATGGGAGGAACAATTTT+TGG | - | chr1_3:23164236-23164255 | None:intergenic | 35.0% |
| !!! | CAGTTGCTTTTGCAAAATCA+CGG | + | chr1_3:23164263-23164282 | Msa0110340:intron | 35.0% |
| CTTTGACATCATCGTTCAAT+TGG | + | chr1_3:23164806-23164825 | Msa0110340:intron | 35.0% | |
| GTTCAATTGGTTAAAGGAAG+AGG | + | chr1_3:23164819-23164838 | Msa0110340:intron | 35.0% | |
| !!! | CATAGTCTAATGCCACTTTT+CGG | + | chr1_3:23165024-23165043 | Msa0110340:intron | 35.0% |
| ! | ATTAACACTGTTGCTTCTTC+TGG | - | chr1_3:23165210-23165229 | None:intergenic | 35.0% |
| AATCAGAATTTCAGAGAAGC+AGG | - | chr1_3:23165420-23165439 | None:intergenic | 35.0% | |
| !! | TGCTTCTCTGAAATTCTGAT+TGG | + | chr1_3:23165419-23165438 | Msa0110340:intron | 35.0% |
| CACAAAATAGCTATACGACT+AGG | + | chr1_3:23165484-23165503 | Msa0110340:CDS | 35.0% | |
| TCGTTGAAGTGGTTTATGAA+TGG | + | chr1_3:23165585-23165604 | Msa0110340:three_prime_UTR | 35.0% | |
| CGTTGAAGTGGTTTATGAAT+GGG | + | chr1_3:23165586-23165605 | Msa0110340:three_prime_UTR | 35.0% | |
| AAGTGGTTTATGAATGGGAA+AGG | + | chr1_3:23165591-23165610 | Msa0110340:three_prime_UTR | 35.0% | |
| !! | GATCAAAGGTGTACATTTTG+GGG | + | chr1_3:23165675-23165694 | Msa0110340:three_prime_UTR | 35.0% |
| TAACAAAGTATGGACGTCGT+CGG | + | chr1_3:23160547-23160566 | Msa0110340:intron | 40.0% | |
| ATGAAAGAAACCTTGCACGA+TGG | + | chr1_3:23160607-23160626 | Msa0110340:intron | 40.0% | |
| TACAGCATGGGAATATGGAA+AGG | + | chr1_3:23160711-23160730 | Msa0110340:intron | 40.0% | |
| AAGGAGGAGAAAATCTTGTG+TGG | + | chr1_3:23160756-23160775 | Msa0110340:intron | 40.0% | |
| ! | TGGACCAAGACCAAGAATTT+TGG | + | chr1_3:23160776-23160795 | Msa0110340:intron | 40.0% |
| AAGAGAGAAGAGAGAGAAGA+GGG | + | chr1_3:23160820-23160839 | Msa0110340:intron | 40.0% | |
| !!! | CTGGACCAAGAATTTTGGTT+TGG | - | chr1_3:23160911-23160930 | None:intergenic | 40.0% |
| CAAACCAAAATTCTTGGTCC+AGG | + | chr1_3:23160909-23160928 | Msa0110340:intron | 40.0% | |
| TTTCCAGAGAAACACTTGTG+TGG | - | chr1_3:23160936-23160955 | None:intergenic | 40.0% | |
| ! | ACACAAGTGTTTCTCTGGAA+AGG | + | chr1_3:23160935-23160954 | Msa0110340:intron | 40.0% |
| CGACAATAATTTAGAGACGG+AGG | - | chr1_3:23161064-23161083 | None:intergenic | 40.0% | |
| ! | TGTCGTTTAAGGTTTGTGCA+CGG | + | chr1_3:23161079-23161098 | Msa0110340:intron | 40.0% |
| AGACTATTATTGTGAGACGG+AGG | + | chr1_3:23161306-23161325 | Msa0110340:intron | 40.0% | |
| GACTATTATTGTGAGACGGA+GGG | + | chr1_3:23161307-23161326 | Msa0110340:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_3:23161665-23161684 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr1_3:23161527-23161546 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_3:23161665-23161684 | Msa0110340:intron | 40.0% |
| ! | ATTTTCAAAAGATTGCCGCC+AGG | + | chr1_3:23161726-23161745 | Msa0110340:intron | 40.0% |
| CCCTAATTCTAAATACCTGG+CGG | - | chr1_3:23161744-23161763 | None:intergenic | 40.0% | |
| ! | CCGCCAGGTATTTAGAATTA+GGG | + | chr1_3:23161741-23161760 | Msa0110340:intron | 40.0% |
| AGTGATGAACACAGACTGTT+GGG | - | chr1_3:23161818-23161837 | None:intergenic | 40.0% | |
| AAGTGATGAACACAGACTGT+TGG | - | chr1_3:23161819-23161838 | None:intergenic | 40.0% | |
| TCTGTGTTCATCACTTTCAC+AGG | + | chr1_3:23161823-23161842 | Msa0110340:intron | 40.0% | |
| CTGTGTTCATCACTTTCACA+GGG | + | chr1_3:23161824-23161843 | Msa0110340:intron | 40.0% | |
| TCATCACTTTCACAGGGATA+CGG | + | chr1_3:23161830-23161849 | Msa0110340:intron | 40.0% | |
| CGGCTAAGAATCCTGATTAT+TGG | + | chr1_3:23161850-23161869 | Msa0110340:intron | 40.0% | |
| GATTCCTGGACTAAAAGGAT+CGG | + | chr1_3:23161985-23162004 | Msa0110340:intron | 40.0% | |
| ! | AAATCCGATCCTTTTAGTCC+AGG | - | chr1_3:23161992-23162011 | None:intergenic | 40.0% |
| ! | GGATTTGTTTAAGGTAGTGG+AGG | + | chr1_3:23162006-23162025 | Msa0110340:intron | 40.0% |
| !! | TTTAAGGTAGTGGAGGCTAA+TGG | + | chr1_3:23162013-23162032 | Msa0110340:intron | 40.0% |
| ! | GCTTTTACACACCACTCTAA+AGG | + | chr1_3:23162277-23162296 | Msa0110340:CDS | 40.0% |
| AGAGTAGACCTTTCATATCG+GGG | - | chr1_3:23162514-23162533 | None:intergenic | 40.0% | |
| CGATATGAAAGGTCTACTCT+TGG | + | chr1_3:23162514-23162533 | Msa0110340:intron | 40.0% | |
| GCTATTATACGGTGTGTTTG+TGG | + | chr1_3:23162536-23162555 | Msa0110340:intron | 40.0% | |
| GTAAGACAGTTGAAGAAGTG+TGG | - | chr1_3:23163445-23163464 | None:intergenic | 40.0% | |
| GAGTAACACTGGTAAAGAGA+AGG | - | chr1_3:23163487-23163506 | None:intergenic | 40.0% | |
| ! | CTCTTTACCAGTGTTACTCT+TGG | + | chr1_3:23163488-23163507 | Msa0110340:intron | 40.0% |
| TGAAGACCATCACATACACA+TGG | - | chr1_3:23163605-23163624 | None:intergenic | 40.0% | |
| ACGCGTCAAGTTCTATGATT+AGG | + | chr1_3:23163970-23163989 | Msa0110340:intron | 40.0% | |
| GATTGCAAAAGCTATGAAGC+TGG | + | chr1_3:23164181-23164200 | Msa0110340:intron | 40.0% | |
| !!! | TGGGAGGAACAATTTTTGGT+CGG | - | chr1_3:23164232-23164251 | None:intergenic | 40.0% |
| GAAAAAGGGATGAGCTTGAT+TGG | + | chr1_3:23164395-23164414 | Msa0110340:intron | 40.0% | |
| CCTACAAGAACAACATCAAC+CGG | - | chr1_3:23164538-23164557 | None:intergenic | 40.0% | |
| GCAAAATACCAACCGAAAAG+TGG | - | chr1_3:23165039-23165058 | None:intergenic | 40.0% | |
| !!! | TTTTTTGCATCAGACAGCCT+AGG | - | chr1_3:23165282-23165301 | None:intergenic | 40.0% |
| GGCTGTCTGATGCAAAAAAT+AGG | + | chr1_3:23165283-23165302 | Msa0110340:CDS | 40.0% | |
| TTCACTCTTCAGGGCTTATT+GGG | - | chr1_3:23165534-23165553 | None:intergenic | 40.0% | |
| CAAATTTGGTCTCGTTGAAG+TGG | + | chr1_3:23165574-23165593 | Msa0110340:three_prime_UTR | 40.0% | |
| ! | CACCAATACATTTTTCACCG+AGG | - | chr1_3:23165701-23165720 | None:intergenic | 40.0% |
| ! | ATGGATTGTACCATCGTGCA+AGG | - | chr1_3:23160620-23160639 | None:intergenic | 45.0% |
| CACGATGGTACAATCCATGA+GGG | + | chr1_3:23160622-23160641 | Msa0110340:intron | 45.0% | |
| CATGGGAATATGGAAAGGAG+TGG | + | chr1_3:23160716-23160735 | Msa0110340:intron | 45.0% | |
| TATGGAAAGGAGTGGAAGCA+TGG | + | chr1_3:23160724-23160743 | Msa0110340:intron | 45.0% | |
| ! | ATGGAAAGGAGTGGAAGCAT+GGG | + | chr1_3:23160725-23160744 | Msa0110340:intron | 45.0% |
| ! | GGAAGCATGGGAATATGGAA+AGG | + | chr1_3:23160737-23160756 | Msa0110340:intron | 45.0% |
| AGCATGGGAATATGGAAAGG+AGG | + | chr1_3:23160714-23160733 | Msa0110340:intron | 45.0% | |
| GAAGAGAGAAGAGAGAGAAG+AGG | + | chr1_3:23160819-23160838 | Msa0110340:intron | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | chr1_3:23160863-23160882 | Msa0110340:intron | 45.0% | |
| ! | TGGACCTGGACCAAGAATTT+TGG | - | chr1_3:23160916-23160935 | None:intergenic | 45.0% |
| ! | AGTGTTTCTCTGGAAAGGAG+TGG | + | chr1_3:23160940-23160959 | Msa0110340:intron | 45.0% |
| ! | GTGTTTCTCTGGAAAGGAGT+GGG | + | chr1_3:23160941-23160960 | Msa0110340:intron | 45.0% |
| GAGTGGGTACTTAAATGACC+AGG | + | chr1_3:23160957-23160976 | Msa0110340:intron | 45.0% | |
| AATGCGCCTAGTAAGCTGAA+AGG | + | chr1_3:23161371-23161390 | Msa0110340:intron | 45.0% | |
| ACGGAGGGAGTAATTGACAT+TGG | - | chr1_3:23161407-23161426 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_3:23161664-23161683 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_3:23161664-23161683 | Msa0110340:intron | 45.0% |
| ! | GCCGCCAGGTATTTAGAATT+AGG | + | chr1_3:23161740-23161759 | Msa0110340:intron | 45.0% |
| ACTGTTGGGATTACCGATGT+TGG | - | chr1_3:23161804-23161823 | None:intergenic | 45.0% | |
| TGCTACTGAGATGCGAAAGA+AGG | + | chr1_3:23162229-23162248 | Msa0110340:CDS | 45.0% | |
| GCTACTGAGATGCGAAAGAA+GGG | + | chr1_3:23162230-23162249 | Msa0110340:CDS | 45.0% | |
| ! | TACACACCACTCTAAAGGGA+AGG | + | chr1_3:23162282-23162301 | Msa0110340:CDS | 45.0% |
| TAGACGATGTATGAAGGCAG+TGG | - | chr1_3:23162317-23162336 | None:intergenic | 45.0% | |
| ACAACAGACCCCGATATGAA+AGG | + | chr1_3:23162503-23162522 | Msa0110340:intron | 45.0% | |
| ACCAATGACATTGAGCGTCT+CGG | + | chr1_3:23162771-23162790 | Msa0110340:intron | 45.0% | |
| ACGGTAGAAGCTTCAAGCTT+TGG | - | chr1_3:23162915-23162934 | None:intergenic | 45.0% | |
| AAGCTTGCCTATCAATACCC+TGG | - | chr1_3:23163169-23163188 | None:intergenic | 45.0% | |
| CTGTCTTACAGCACATCTCA+AGG | + | chr1_3:23163456-23163475 | Msa0110340:intron | 45.0% | |
| !!! | GGGAGGAACAATTTTTGGTC+GGG | - | chr1_3:23164231-23164250 | None:intergenic | 45.0% |
| AGCAACTGAGCTCGATTCAT+GGG | - | chr1_3:23164251-23164270 | None:intergenic | 45.0% | |
| AAGCAACTGAGCTCGATTCA+TGG | - | chr1_3:23164252-23164271 | None:intergenic | 45.0% | |
| CAGTTGGTTAGCATCACTGT+AGG | - | chr1_3:23164292-23164311 | None:intergenic | 45.0% | |
| ! | CCGGTTGATGTTGTTCTTGT+AGG | + | chr1_3:23164535-23164554 | Msa0110340:intron | 45.0% |
| CCAGCACTTAGCTTCTTAAC+AGG | - | chr1_3:23164630-23164649 | None:intergenic | 45.0% | |
| CCTGTTAAGAAGCTAAGTGC+TGG | + | chr1_3:23164627-23164646 | Msa0110340:intron | 45.0% | |
| AATTCAAGTATCCTGGCCGT+GGG | - | chr1_3:23164747-23164766 | None:intergenic | 45.0% | |
| TAGGCACTAGGCAATGTGTT+CGG | + | chr1_3:23164937-23164956 | Msa0110340:intron | 45.0% | |
| !!! | GTCTAATGCCACTTTTCGGT+TGG | + | chr1_3:23165028-23165047 | Msa0110340:intron | 45.0% |
| CTTCACTCTTCAGGGCTTAT+TGG | - | chr1_3:23165535-23165554 | None:intergenic | 45.0% | |
| GGCATACTCTTCACTCTTCA+GGG | - | chr1_3:23165543-23165562 | None:intergenic | 45.0% | |
| GGCCTCGGTGAAAAATGTAT+TGG | + | chr1_3:23165696-23165715 | Msa0110340:three_prime_UTR | 45.0% | |
| GCACGATGGTACAATCCATG+AGG | + | chr1_3:23160621-23160640 | Msa0110340:intron | 50.0% | |
| AGAATGCCTTGGCAGATGAG+AGG | + | chr1_3:23160657-23160676 | Msa0110340:intron | 50.0% | |
| GAATGCCTTGGCAGATGAGA+GGG | + | chr1_3:23160658-23160677 | Msa0110340:intron | 50.0% | |
| ! | GGAGTGGAAGCATGGGAATA+TGG | + | chr1_3:23160732-23160751 | Msa0110340:intron | 50.0% |
| GAGAAACACTTGTGTGGACC+TGG | - | chr1_3:23160930-23160949 | None:intergenic | 50.0% | |
| GGTCCACACAAGTGTTTCTC+TGG | + | chr1_3:23160930-23160949 | Msa0110340:intron | 50.0% | |
| CGTTGCTGCCTTTGCCAATT+TGG | - | chr1_3:23161901-23161920 | None:intergenic | 50.0% | |
| TGTGCGGCGTGTCTTGTATA+AGG | + | chr1_3:23161923-23161942 | Msa0110340:intron | 50.0% | |
| GAGATGCGAAAGAAGGGAGT+TGG | + | chr1_3:23162236-23162255 | Msa0110340:CDS | 50.0% | |
| TCCGAGACGCTCAATGTCAT+TGG | - | chr1_3:23162775-23162794 | None:intergenic | 50.0% | |
| TGGACAACCACGACACTTGA+CGG | - | chr1_3:23163425-23163444 | None:intergenic | 50.0% | |
| TATGAAGCTGGAGTTCCGTG+AGG | + | chr1_3:23164193-23164212 | Msa0110340:intron | 50.0% | |
| AACTGAGCTCGATTCATGGG+AGG | - | chr1_3:23164248-23164267 | None:intergenic | 50.0% | |
| GAATTCAAGTATCCTGGCCG+TGG | - | chr1_3:23164748-23164767 | None:intergenic | 50.0% | |
| TGAGAACCAGCTCGATGAAC+TGG | + | chr1_3:23165182-23165201 | Msa0110340:CDS | 50.0% | |
| GGGCATACTCTTCACTCTTC+AGG | - | chr1_3:23165544-23165563 | None:intergenic | 50.0% | |
| !!! | AGGTGTACATTTTGGGGCCT+CGG | + | chr1_3:23165681-23165700 | Msa0110340:three_prime_UTR | 50.0% |
| CAAAGGCAGCAACGACTGTG+CGG | + | chr1_3:23161907-23161926 | Msa0110340:intron | 55.0% | |
| GAGTGTGCTGTGTGTGTGTG+TGG | + | chr1_3:23163812-23163831 | Msa0110340:intron | 55.0% | |
| GGGCATTACGTACCTCCTCA+CGG | - | chr1_3:23164211-23164230 | None:intergenic | 55.0% | |
| GGCGAGTTGCGTCTTCACAA+AGG | + | chr1_3:23164648-23164667 | Msa0110340:intron | 55.0% | |
| AAGTATCCTGGCCGTGGGTA+GGG | - | chr1_3:23164742-23164761 | None:intergenic | 55.0% | |
| CTGGTTCCAGTTCATCGAGC+TGG | - | chr1_3:23165191-23165210 | None:intergenic | 55.0% | |
| GCTCGGATGCATTCTTCTGC+TGG | - | chr1_3:23165248-23165267 | None:intergenic | 55.0% | |
| CCTAGGTGTGAGTGATGGCT+CGG | - | chr1_3:23165265-23165284 | None:intergenic | 55.0% | |
| GACAGCCTAGGTGTGAGTGA+TGG | - | chr1_3:23165270-23165289 | None:intergenic | 55.0% | |
| ACACGCCCTCTCATCTGCCA+AGG | - | chr1_3:23160666-23160685 | None:intergenic | 60.0% | |
| ! | TTGGCAGATGAGAGGGCGTG+TGG | + | chr1_3:23160665-23160684 | Msa0110340:intron | 60.0% |
| ! | ATGAGAGGGCGTGTGGTGCA+TGG | + | chr1_3:23160672-23160691 | Msa0110340:intron | 60.0% |
| ! | GGATTCGCCGTCAAGTGTCG+TGG | + | chr1_3:23163415-23163434 | Msa0110340:intron | 60.0% |
| GAAGCTGGAGTTCCGTGAGG+AGG | + | chr1_3:23164196-23164215 | Msa0110340:intron | 60.0% | |
| AGTATCCTGGCCGTGGGTAG+GGG | - | chr1_3:23164741-23164760 | None:intergenic | 60.0% | |
| CAAGTATCCTGGCCGTGGGT+AGG | - | chr1_3:23164743-23164762 | None:intergenic | 60.0% | |
| CCGAGCCATCACTCACACCT+AGG | + | chr1_3:23165262-23165281 | Msa0110340:CDS | 60.0% | |
| GTGGCACTTGCCCCTACCCA+CGG | + | chr1_3:23164728-23164747 | Msa0110340:intron | 65.0% | |
| ACTTGCCCCTACCCACGGCC+AGG | + | chr1_3:23164733-23164752 | Msa0110340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23160534 | 23165830 | 23160534 | ID=Msa0110340;Name=Msa0110340 |
| chr1_3 | mRNA | 23160534 | 23165830 | 23160534 | ID=Msa0110340-mRNA-1;Parent=Msa0110340;Name=Msa0110340-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.25|0.4|0.6|1|1|5|278|107 |
| chr1_3 | exon | 23160534 | 23160540 | 23160534 | ID=Msa0110340-mRNA-1:exon:8105;Parent=Msa0110340-mRNA-1 |
| chr1_3 | exon | 23162216 | 23162303 | 23162216 | ID=Msa0110340-mRNA-1:exon:8106;Parent=Msa0110340-mRNA-1 |
| chr1_3 | exon | 23163017 | 23163023 | 23163017 | ID=Msa0110340-mRNA-1:exon:8107;Parent=Msa0110340-mRNA-1 |
| chr1_3 | exon | 23165156 | 23165304 | 23165156 | ID=Msa0110340-mRNA-1:exon:8108;Parent=Msa0110340-mRNA-1 |
| chr1_3 | exon | 23165480 | 23165830 | 23165480 | ID=Msa0110340-mRNA-1:exon:8109;Parent=Msa0110340-mRNA-1 |
| chr1_3 | CDS | 23160534 | 23160540 | 23160534 | ID=Msa0110340-mRNA-1:cds;Parent=Msa0110340-mRNA-1 |
| chr1_3 | CDS | 23162216 | 23162303 | 23162216 | ID=Msa0110340-mRNA-1:cds;Parent=Msa0110340-mRNA-1 |
| chr1_3 | CDS | 23163017 | 23163023 | 23163017 | ID=Msa0110340-mRNA-1:cds;Parent=Msa0110340-mRNA-1 |
| chr1_3 | CDS | 23165156 | 23165304 | 23165156 | ID=Msa0110340-mRNA-1:cds;Parent=Msa0110340-mRNA-1 |
| chr1_3 | CDS | 23165480 | 23165552 | 23165480 | ID=Msa0110340-mRNA-1:cds;Parent=Msa0110340-mRNA-1 |
| chr1_3 | three_prime_UTR | 23165553 | 23165830 | 23165553 | ID=Msa0110340-mRNA-1:three_prime_utr;Parent=Msa0110340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
