Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017360 | sp|Q5R533|SERC3_PONAB | 25.622 | 402 | 220 | 15 | 84 | 421 | 84 | 470 | 3.26e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017360 | A0A072VIB5 | 87.472 | 439 | 34 | 3 | 3 | 438 | 7 | 427 | 0.0 | 750 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017360 | Msa0065580 | 0.850851 | 1.299544e-60 | -8.615850e-47 |
| Msa0017360 | Msa0111030 | 0.837646 | 4.596382e-57 | -8.615850e-47 |
| Msa0017360 | Msa0154970 | 0.955010 | 8.098419e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017360 | MtrunA17_Chr1g0169271 | 87.472 | 439 | 34 | 3 | 3 | 438 | 7 | 427 | 0.0 | 750 |
| Msa0017360 | MtrunA17_Chr8g0390691 | 45.865 | 399 | 190 | 7 | 24 | 417 | 11 | 388 | 8.88e-113 | 337 |
| Msa0017360 | MtrunA17_Chr6g0485111 | 45.063 | 395 | 188 | 9 | 39 | 425 | 28 | 401 | 3.16e-108 | 325 |
| Msa0017360 | MtrunA17_Chr2g0287641 | 28.463 | 397 | 244 | 6 | 47 | 421 | 28 | 406 | 5.76e-45 | 161 |
| Msa0017360 | MtrunA17_Chr7g0237091 | 27.431 | 401 | 242 | 12 | 47 | 421 | 31 | 408 | 3.67e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017360 | AT2G33205.1 | 55.046 | 436 | 161 | 6 | 1 | 425 | 1 | 412 | 3.83e-162 | 464 |
| Msa0017360 | AT2G33205.8 | 54.795 | 438 | 161 | 7 | 1 | 425 | 1 | 414 | 3.05e-160 | 459 |
| Msa0017360 | AT2G33205.5 | 54.795 | 438 | 161 | 7 | 1 | 425 | 1 | 414 | 3.05e-160 | 459 |
| Msa0017360 | AT2G33205.9 | 54.869 | 421 | 153 | 7 | 1 | 408 | 1 | 397 | 3.82e-152 | 437 |
| Msa0017360 | AT2G33205.6 | 53.149 | 397 | 149 | 7 | 1 | 384 | 1 | 373 | 6.24e-135 | 392 |
| Msa0017360 | AT2G33205.2 | 56.342 | 339 | 113 | 6 | 98 | 425 | 5 | 319 | 1.18e-122 | 360 |
| Msa0017360 | AT2G33205.7 | 56.707 | 328 | 107 | 6 | 109 | 425 | 1 | 304 | 1.42e-119 | 351 |
| Msa0017360 | AT3G24460.2 | 43.250 | 400 | 189 | 6 | 35 | 421 | 28 | 402 | 4.99e-110 | 330 |
| Msa0017360 | AT3G24460.1 | 43.250 | 400 | 189 | 6 | 35 | 421 | 28 | 402 | 4.99e-110 | 330 |
| Msa0017360 | AT2G33205.3 | 50.568 | 352 | 139 | 6 | 1 | 341 | 1 | 328 | 7.01e-109 | 325 |
| Msa0017360 | AT2G33205.4 | 50.568 | 352 | 139 | 6 | 1 | 341 | 1 | 328 | 7.01e-109 | 325 |
| Msa0017360 | AT4G13345.1 | 44.792 | 384 | 178 | 5 | 47 | 421 | 33 | 391 | 9.26e-108 | 324 |
| Msa0017360 | AT4G13345.2 | 44.271 | 384 | 180 | 5 | 47 | 421 | 33 | 391 | 5.97e-107 | 322 |
| Msa0017360 | AT4G13345.6 | 44.271 | 384 | 180 | 5 | 47 | 421 | 33 | 391 | 5.97e-107 | 322 |
| Msa0017360 | AT4G13345.4 | 44.744 | 371 | 171 | 5 | 47 | 408 | 33 | 378 | 2.60e-101 | 308 |
| Msa0017360 | AT4G13345.5 | 42.939 | 347 | 164 | 5 | 47 | 384 | 33 | 354 | 3.08e-86 | 268 |
| Msa0017360 | AT4G13345.3 | 40.288 | 278 | 132 | 5 | 47 | 315 | 33 | 285 | 2.21e-52 | 178 |
| Msa0017360 | AT4G13345.7 | 40.288 | 278 | 132 | 5 | 47 | 315 | 33 | 285 | 2.21e-52 | 178 |
| Msa0017360 | AT3G06170.1 | 28.788 | 396 | 243 | 7 | 47 | 421 | 29 | 406 | 8.86e-41 | 150 |
| Msa0017360 | AT1G16180.2 | 26.065 | 399 | 252 | 8 | 47 | 421 | 31 | 410 | 1.80e-31 | 125 |
| Msa0017360 | AT1G16180.1 | 26.065 | 399 | 252 | 8 | 47 | 421 | 31 | 410 | 1.80e-31 | 125 |
Find 78 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACGCCCGTTATTATTT+TGG | 0.172149 | 1_1:-28753153 | Msa0017360:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1_1:-28750965 | Msa0017360:intron |
| AACCACTATTTCCAATTTCT+TGG | 0.209768 | 1_1:+28751163 | None:intergenic |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1_1:+28751185 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1_1:+28751002 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1_1:-28751004 | Msa0017360:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1_1:+28751887 | None:intergenic |
| GAGACAAATAACCAAGAAAT+TGG | 0.290791 | 1_1:-28751174 | Msa0017360:CDS |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1_1:-28752230 | Msa0017360:CDS |
| CTTGGTAACAGGTGCTCCTT+TGG | 0.300859 | 1_1:-28751727 | Msa0017360:intron |
| GTGATTTACCTGAAAGCATT+TGG | 0.310592 | 1_1:+28750957 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1_1:-28751587 | Msa0017360:CDS |
| CAATTGCAAATATGGCAATA+AGG | 0.374529 | 1_1:+28751010 | None:intergenic |
| AACCAAGAAATTGGAAATAG+TGG | 0.389373 | 1_1:-28751165 | Msa0017360:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1_1:+28751192 | None:intergenic |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1_1:-28751879 | Msa0017360:CDS |
| GGGGTTCTCCGTGTGAGTTT+AGG | 0.395668 | 1_1:-28752681 | Msa0017360:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1_1:+28750241 | None:intergenic |
| GAAAGGTTCTTACATAGAAA+TGG | 0.401222 | 1_1:-28752076 | Msa0017360:intron |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1_1:-28750610 | Msa0017360:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1_1:-28752735 | Msa0017360:intron |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1_1:+28750978 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1_1:-28753217 | Msa0017360:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1_1:-28750611 | Msa0017360:CDS |
| ATAGTATACCTTTGAATGTA+AGG | 0.434180 | 1_1:+28751558 | None:intergenic |
| TGATAGGCAGAGGGGTCCTC+TGG | 0.434826 | 1_1:-28753238 | Msa0017360:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1_1:-28752310 | Msa0017360:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.454260 | 1_1:+28753146 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1_1:-28752726 | Msa0017360:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1_1:-28750672 | Msa0017360:CDS |
| TTTATATTGGTGCTATATGT+GGG | 0.469364 | 1_1:-28751684 | Msa0017360:CDS |
| ATATTGTTCATGTTAGTGAT+AGG | 0.469895 | 1_1:-28753254 | Msa0017360:CDS |
| GAAATAGCTCGTATTGGTGC+AGG | 0.472544 | 1_1:-28752028 | Msa0017360:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1_1:+28753145 | None:intergenic |
| GCAGGTGAAATAGCTCGTAT+TGG | 0.478741 | 1_1:-28752034 | Msa0017360:CDS |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1_1:-28750236 | Msa0017360:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1_1:-28751566 | Msa0017360:CDS |
| ATAGAACTTACAACGAATCC+AGG | 0.494801 | 1_1:+28753065 | None:intergenic |
| ATTAATCTTCAGTGGTTCAA+AGG | 0.498219 | 1_1:-28750085 | Msa0017360:three_prime_UTR |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1_1:-28752322 | Msa0017360:CDS |
| AAGAAATTGGAAATAGTGGT+TGG | 0.507471 | 1_1:-28751161 | Msa0017360:CDS |
| TTCATGTTAGTGATAGGCAG+AGG | 0.526988 | 1_1:-28753248 | Msa0017360:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1_1:+28752233 | None:intergenic |
| TTAGATGGAGCATTGATGTT+GGG | 0.535180 | 1_1:-28750483 | Msa0017360:intron |
| CTGACTCAGTTGATGCATGA+TGG | 0.552921 | 1_1:-28750186 | Msa0017360:exon |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1_1:+28752245 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1_1:+28750629 | None:intergenic |
| AAATAGTAATTAATCTTCAG+TGG | 0.561162 | 1_1:-28750093 | Msa0017360:three_prime_UTR |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1_1:-28752306 | Msa0017360:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1_1:+28752234 | None:intergenic |
| CTTAGATGGAGCATTGATGT+TGG | 0.573927 | 1_1:-28750484 | Msa0017360:intron |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1_1:-28752307 | Msa0017360:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1_1:+28751188 | None:intergenic |
| CTTCAGTGGTTCAAAGGCAA+AGG | 0.585598 | 1_1:-28750079 | Msa0017360:three_prime_UTR |
| GATAATGATACAACTATGCA+AGG | 0.586049 | 1_1:-28750214 | Msa0017360:CDS |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1_1:-28750468 | Msa0017360:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1_1:-28753119 | Msa0017360:CDS |
| TCATGTTAGTGATAGGCAGA+GGG | 0.592097 | 1_1:-28753247 | Msa0017360:CDS |
| ATGGACAAAGTGTTCTACCC+TGG | 0.592870 | 1_1:-28753083 | Msa0017360:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1_1:-28750447 | Msa0017360:CDS |
| GATGGAGCATTGATGTTGGG+TGG | 0.603110 | 1_1:-28750480 | Msa0017360:CDS |
| AAATTGTACAAATATATGGT+TGG | 0.611451 | 1_1:-28752226 | Msa0017360:intron |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1_1:+28753091 | None:intergenic |
| TTGAAGAATGAGTGCATCTG+AGG | 0.616765 | 1_1:-28753292 | None:intergenic |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1_1:+28753222 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1_1:-28750461 | Msa0017360:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1_1:-28752335 | Msa0017360:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1_1:+28750972 | None:intergenic |
| TAGAACTTACAACGAATCCA+GGG | 0.632769 | 1_1:+28753066 | None:intergenic |
| CAAAGCATCCTAAACTCACA+CGG | 0.641175 | 1_1:+28752673 | None:intergenic |
| AAATAGCTCGTATTGGTGCA+GGG | 0.645847 | 1_1:-28752027 | Msa0017360:intron |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1_1:-28753291 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1_1:+28750643 | None:intergenic |
| AGTTGATGCATGATGGACAA+TGG | 0.666240 | 1_1:-28750179 | Msa0017360:exon |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1_1:+28751711 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1_1:+28751591 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1_1:-28750467 | Msa0017360:CDS |
| CATGTTAGTGATAGGCAGAG+GGG | 0.724209 | 1_1:-28753246 | Msa0017360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGAAAAAAATATATTTA+TGG | - | chr1_1:28751178-28751197 | Msa0017360:CDS | 10.0% |
| !! | AATAATTAAGAAAAAATACA+AGG | + | chr1_1:28751829-28751848 | None:intergenic | 10.0% |
| !! | AAATGTACATTATTAATATA+AGG | + | chr1_1:28752814-28752833 | None:intergenic | 10.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | + | chr1_1:28750181-28750200 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | - | chr1_1:28751831-28751850 | Msa0017360:intron | 15.0% |
| !! | ACTAATTATTTCAACATATA+GGG | + | chr1_1:28752589-28752608 | None:intergenic | 15.0% |
| !! | AACTAATTATTTCAACATAT+AGG | + | chr1_1:28752590-28752609 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | - | chr1_1:28753047-28753066 | Msa0017360:intron | 15.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | + | chr1_1:28750180-28750199 | None:intergenic | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | + | chr1_1:28750781-28750800 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | - | chr1_1:28751050-28751069 | Msa0017360:intron | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | + | chr1_1:28751092-28751111 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | + | chr1_1:28751093-28751112 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | - | chr1_1:28751093-28751112 | Msa0017360:intron | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | - | chr1_1:28751097-28751116 | Msa0017360:intron | 20.0% |
| !!! | ATTTAAGTTGATGATTACAT+AGG | - | chr1_1:28751381-28751400 | Msa0017360:intron | 20.0% |
| !!! | ATATTAACATGTTATTGACT+TGG | - | chr1_1:28751578-28751597 | Msa0017360:CDS | 20.0% |
| !!! | TTAATATATTTTTCATCGCA+TGG | - | chr1_1:28751708-28751727 | Msa0017360:CDS | 20.0% |
| !!! | TCAAAAGTGACAATATTTTT+AGG | - | chr1_1:28751944-28751963 | Msa0017360:intron | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+CGG | - | chr1_1:28751970-28751989 | Msa0017360:intron | 20.0% |
| !! | TAGATACATTCTAATTCATA+TGG | + | chr1_1:28752250-28752269 | None:intergenic | 20.0% |
| !! | TCTATAATCTCATACTATAA+AGG | - | chr1_1:28752266-28752285 | Msa0017360:CDS | 20.0% |
| !!! | ATACTTTACATGCTTTAAAT+GGG | + | chr1_1:28752415-28752434 | None:intergenic | 20.0% |
| !!! | TATACTTTACATGCTTTAAA+TGG | + | chr1_1:28752416-28752435 | None:intergenic | 20.0% |
| !!! | TTTGAGAAATTAATTTGAGA+TGG | + | chr1_1:28752506-28752525 | None:intergenic | 20.0% |
| !! | CTAATTATTTCAACATATAG+GGG | + | chr1_1:28752588-28752607 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGAAAACTGTTA+AGG | + | chr1_1:28752618-28752637 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAGCTTTATTTT+TGG | + | chr1_1:28752631-28752650 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | + | chr1_1:28752965-28752984 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | + | chr1_1:28752966-28752985 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | + | chr1_1:28753025-28753044 | None:intergenic | 20.0% |
| !! | AAATAGTAATTAATCTTCAG+TGG | - | chr1_1:28753230-28753249 | Msa0017360:CDS | 20.0% |
| ! | ATATTGTTCATGTTAGTGAT+AGG | - | chr1_1:28750069-28750088 | Msa0017360:three_prime_UTR | 25.0% |
| !! | AAAATGCTAGTGTCTAAAAT+TGG | + | chr1_1:28750297-28750316 | None:intergenic | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | + | chr1_1:28750580-28750599 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | - | chr1_1:28750588-28750607 | Msa0017360:CDS | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | - | chr1_1:28750620-28750639 | Msa0017360:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | - | chr1_1:28750621-28750640 | Msa0017360:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | - | chr1_1:28750622-28750641 | Msa0017360:CDS | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | - | chr1_1:28750777-28750796 | Msa0017360:intron | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | + | chr1_1:28750873-28750892 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | + | chr1_1:28750940-28750959 | None:intergenic | 25.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | - | chr1_1:28750988-28751007 | Msa0017360:CDS | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | + | chr1_1:28751138-28751157 | None:intergenic | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | + | chr1_1:28751439-28751458 | None:intergenic | 25.0% |
| !! | TTTCTATGAATGCTTTTGAA+GGG | + | chr1_1:28751543-28751562 | None:intergenic | 25.0% |
| !! | ATTTCTATGAATGCTTTTGA+AGG | + | chr1_1:28751544-28751563 | None:intergenic | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | - | chr1_1:28751626-28751645 | Msa0017360:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | - | chr1_1:28751638-28751657 | Msa0017360:CDS | 25.0% |
| !!! | TTTATATTGGTGCTATATGT+GGG | - | chr1_1:28751639-28751658 | Msa0017360:CDS | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | + | chr1_1:28751768-28751787 | None:intergenic | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | - | chr1_1:28751890-28751909 | Msa0017360:CDS | 25.0% |
| ! | AAGCAATCATGTGATAAATT+AGG | + | chr1_1:28752769-28752788 | None:intergenic | 25.0% |
| ! | TTTATCACATGATTGCTTTA+AGG | - | chr1_1:28752771-28752790 | Msa0017360:intron | 25.0% |
| !! | TGTACATTTTATACCTTAGA+TGG | - | chr1_1:28752825-28752844 | Msa0017360:intron | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | + | chr1_1:28752964-28752983 | None:intergenic | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | + | chr1_1:28753024-28753043 | None:intergenic | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | + | chr1_1:28753026-28753045 | None:intergenic | 25.0% |
| ! | AGTAGCAAAAAATTAAAAGG+AGG | + | chr1_1:28753188-28753207 | None:intergenic | 25.0% |
| ! | ACGAGTAGCAAAAAATTAAA+AGG | + | chr1_1:28753191-28753210 | None:intergenic | 25.0% |
| GGAAGAAGTAATATCTTCAT+TGG | - | chr1_1:28750106-28750125 | Msa0017360:three_prime_UTR | 30.0% | |
| ! | TGATAATGAATCTTGTTGCA+TGG | - | chr1_1:28750204-28750223 | Msa0017360:CDS | 30.0% |
| CTATTACAGTTGTTTAACTG+TGG | - | chr1_1:28750322-28750341 | Msa0017360:intron | 30.0% | |
| !!! | AGTTTTAAAGATCACATCGA+AGG | + | chr1_1:28750426-28750445 | None:intergenic | 30.0% |
| ATCAAAGTTTGTGGAAATGA+AGG | - | chr1_1:28750597-28750616 | Msa0017360:CDS | 30.0% | |
| ! | TGATTGTTTTCATTCATTGG+GGG | - | chr1_1:28750623-28750642 | Msa0017360:CDS | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | - | chr1_1:28750720-28750739 | Msa0017360:intron | 30.0% |
| ATGTATACCAGTAACATGTT+TGG | + | chr1_1:28750749-28750768 | None:intergenic | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | - | chr1_1:28751001-28751020 | Msa0017360:CDS | 30.0% | |
| !!! | GGTCAATTTTGTTTTGAGAA+AGG | - | chr1_1:28751230-28751249 | Msa0017360:intron | 30.0% |
| GAAAGGTTCTTACATAGAAA+TGG | - | chr1_1:28751247-28751266 | Msa0017360:intron | 30.0% | |
| !! | TCTAACTTCTATGTTTTTGC+AGG | - | chr1_1:28751271-28751290 | Msa0017360:intron | 30.0% |
| ! | CTTTCATTCACTTCAAGTTA+TGG | - | chr1_1:28751338-28751357 | Msa0017360:intron | 30.0% |
| CATCAACTTAAATAGTTAGC+TGG | + | chr1_1:28751374-28751393 | None:intergenic | 30.0% | |
| ! | GTGTGATCCATTTTATCATT+TGG | - | chr1_1:28751429-28751448 | Msa0017360:intron | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | - | chr1_1:28751432-28751451 | Msa0017360:intron | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | - | chr1_1:28751444-28751463 | Msa0017360:intron | 30.0% |
| AATTACAGCAAGAAGAATTG+CGG | + | chr1_1:28751735-28751754 | None:intergenic | 30.0% | |
| ! | AATTCTTCTTGCTGTAATTC+TGG | - | chr1_1:28751736-28751755 | Msa0017360:intron | 30.0% |
| TACATTGACATGAAAAATCC+TGG | - | chr1_1:28751794-28751813 | Msa0017360:intron | 30.0% | |
| AATACAAGGAATGAAAAACC+AGG | + | chr1_1:28751815-28751834 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | - | chr1_1:28751841-28751860 | Msa0017360:intron | 30.0% | |
| ! | TCTTTTATCCTCAGGAATTA+TGG | - | chr1_1:28751864-28751883 | Msa0017360:CDS | 30.0% |
| GTTATTTGTCTCACATCTTA+TGG | + | chr1_1:28752141-28752160 | None:intergenic | 30.0% | |
| GAGACAAATAACCAAGAAAT+TGG | - | chr1_1:28752149-28752168 | Msa0017360:intron | 30.0% | |
| AACCAAGAAATTGGAAATAG+TGG | - | chr1_1:28752158-28752177 | Msa0017360:intron | 30.0% | |
| AACCACTATTTCCAATTTCT+TGG | + | chr1_1:28752163-28752182 | None:intergenic | 30.0% | |
| AAGAAATTGGAAATAGTGGT+TGG | - | chr1_1:28752162-28752181 | Msa0017360:intron | 30.0% | |
| AATAAGGAATCCCTATTAAG+AGG | + | chr1_1:28752300-28752319 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | + | chr1_1:28752316-28752335 | None:intergenic | 30.0% | |
| ! | TGCCATATTTGCAATTGTTT+TGG | - | chr1_1:28752319-28752338 | Msa0017360:CDS | 30.0% |
| AGCCAAAACAATTGCAAATA+TGG | + | chr1_1:28752324-28752343 | None:intergenic | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | - | chr1_1:28752712-28752731 | Msa0017360:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | - | chr1_1:28752713-28752732 | Msa0017360:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | - | chr1_1:28752741-28752760 | Msa0017360:intron | 30.0% | |
| GATAATGATACAACTATGCA+AGG | - | chr1_1:28753109-28753128 | Msa0017360:CDS | 30.0% | |
| ATTAATCTTCAGTGGTTCAA+AGG | - | chr1_1:28753238-28753257 | Msa0017360:CDS | 30.0% | |
| GAAGATATTACTTCTTCCAG+AGG | + | chr1_1:28750104-28750123 | None:intergenic | 35.0% | |
| GAACACTTTGTCCATAATCA+CGG | + | chr1_1:28750235-28750254 | None:intergenic | 35.0% | |
| TAGAACTTACAACGAATCCA+GGG | + | chr1_1:28750260-28750279 | None:intergenic | 35.0% | |
| ATAGAACTTACAACGAATCC+AGG | + | chr1_1:28750261-28750280 | None:intergenic | 35.0% | |
| ! | TAGATGTGTGTTTGGTTTCT+CGG | + | chr1_1:28750495-28750514 | None:intergenic | 35.0% |
| AGCTAGATTAGATGTGTGTT+TGG | + | chr1_1:28750503-28750522 | None:intergenic | 35.0% | |
| ! | AGAATGCTACGATTAGTCAT+TGG | - | chr1_1:28750543-28750562 | Msa0017360:intron | 35.0% |
| ATAATTTCTCGTGAAGCATG+TGG | + | chr1_1:28750691-28750710 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | - | chr1_1:28750759-28750778 | Msa0017360:intron | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | - | chr1_1:28750974-28750993 | Msa0017360:CDS | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | - | chr1_1:28751013-28751032 | Msa0017360:CDS | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | + | chr1_1:28751081-28751100 | None:intergenic | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | - | chr1_1:28751192-28751211 | Msa0017360:CDS | 35.0% | |
| ATTAGGATCTTGGTTATAGC+TGG | - | chr1_1:28751209-28751228 | Msa0017360:intron | 35.0% | |
| !! | CTTTTGAAGGGATAGCAAAA+TGG | + | chr1_1:28751531-28751550 | None:intergenic | 35.0% |
| !! | CATGTTATTGACTTGGTAAC+AGG | - | chr1_1:28751585-28751604 | Msa0017360:CDS | 35.0% |
| GGTCATATCCTTACATTCAA+AGG | - | chr1_1:28751757-28751776 | Msa0017360:intron | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | + | chr1_1:28752138-28752157 | None:intergenic | 35.0% | |
| !! | GATTGTGTATGAACTTGTTG+TGG | + | chr1_1:28752225-28752244 | None:intergenic | 35.0% |
| ! | AGGTCTTTTGTCCTCTTAAT+AGG | - | chr1_1:28752286-28752305 | Msa0017360:CDS | 35.0% |
| ! | GGTCTTTTGTCCTCTTAATA+GGG | - | chr1_1:28752287-28752306 | Msa0017360:CDS | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | - | chr1_1:28752358-28752377 | Msa0017360:CDS | 35.0% |
| !! | GTGATTTACCTGAAAGCATT+TGG | + | chr1_1:28752369-28752388 | None:intergenic | 35.0% |
| GATGATATTCCTTACAGCTA+TGG | - | chr1_1:28752651-28752670 | Msa0017360:intron | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | + | chr1_1:28752663-28752682 | None:intergenic | 35.0% | |
| !! | TTAGATGGAGCATTGATGTT+GGG | - | chr1_1:28752840-28752859 | Msa0017360:intron | 35.0% |
| AATGAAAATGAGTTAGGGGT+GGG | + | chr1_1:28753020-28753039 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | + | chr1_1:28753085-28753104 | None:intergenic | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | - | chr1_1:28753087-28753106 | Msa0017360:CDS | 35.0% | |
| TTCATGTTAGTGATAGGCAG+AGG | - | chr1_1:28750075-28750094 | Msa0017360:three_prime_UTR | 40.0% | |
| TCATGTTAGTGATAGGCAGA+GGG | - | chr1_1:28750076-28750095 | Msa0017360:three_prime_UTR | 40.0% | |
| ! | CTTCACGCCCGTTATTATTT+TGG | - | chr1_1:28750170-28750189 | Msa0017360:exon | 40.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | - | chr1_1:28750221-28750240 | Msa0017360:CDS | 40.0% |
| TTTAACTGTGGTTGCGATTG+CGG | - | chr1_1:28750334-28750353 | Msa0017360:intron | 40.0% | |
| CAGCAGAATTCAGACAATTG+CGG | - | chr1_1:28750380-28750399 | Msa0017360:intron | 40.0% | |
| AGGCATCACAACAGAAATTG+CGG | + | chr1_1:28750406-28750425 | None:intergenic | 40.0% | |
| ! | CAAAGCATCCTAAACTCACA+CGG | + | chr1_1:28750653-28750672 | None:intergenic | 40.0% |
| ATTCATGGCATTCTAGATGG+TGG | - | chr1_1:28751016-28751035 | Msa0017360:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | - | chr1_1:28751017-28751036 | Msa0017360:CDS | 40.0% | |
| ! | ATCTGACTTTTCTCGCTACA+TGG | + | chr1_1:28751158-28751177 | None:intergenic | 40.0% |
| ! | AAATAGCTCGTATTGGTGCA+GGG | - | chr1_1:28751296-28751315 | Msa0017360:intron | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | + | chr1_1:28751473-28751492 | None:intergenic | 40.0% |
| CAGACGAAGAAACGAAAAAG+AGG | - | chr1_1:28751471-28751490 | Msa0017360:intron | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | + | chr1_1:28751615-28751634 | None:intergenic | 40.0% | |
| ! | CATAGAGGTCTTTTATCCTC+AGG | - | chr1_1:28751856-28751875 | Msa0017360:CDS | 40.0% |
| GTAAGAAGCCATAATTCCTG+AGG | + | chr1_1:28751875-28751894 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | - | chr1_1:28751905-28751924 | Msa0017360:CDS | 40.0% | |
| ! | CAGCTATGGATTTTTCCACA+TGG | - | chr1_1:28752665-28752684 | Msa0017360:intron | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | - | chr1_1:28752677-28752696 | Msa0017360:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | - | chr1_1:28752678-28752697 | Msa0017360:CDS | 40.0% |
| CAACATCAATGCTCCATCTA+AGG | + | chr1_1:28752841-28752860 | None:intergenic | 40.0% | |
| !! | CTTAGATGGAGCATTGATGT+TGG | - | chr1_1:28752839-28752858 | Msa0017360:intron | 40.0% |
| ATGTTGGGTGGATAAGTACA+TGG | - | chr1_1:28752855-28752874 | Msa0017360:intron | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | - | chr1_1:28752856-28752875 | Msa0017360:intron | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | + | chr1_1:28753021-28753040 | None:intergenic | 40.0% | |
| !! | AGTTGATGCATGATGGACAA+TGG | - | chr1_1:28753144-28753163 | Msa0017360:CDS | 40.0% |
| CATGTTAGTGATAGGCAGAG+GGG | - | chr1_1:28750077-28750096 | Msa0017360:three_prime_UTR | 45.0% | |
| ! | ATGGACAAAGTGTTCTACCC+TGG | - | chr1_1:28750240-28750259 | Msa0017360:CDS | 45.0% |
| GAAGCATGTGGCATAATCGA+AGG | + | chr1_1:28750679-28750698 | None:intergenic | 45.0% | |
| ACGGACACCAAACATGTTAC+TGG | - | chr1_1:28750739-28750758 | Msa0017360:intron | 45.0% | |
| GCAGGTGAAATAGCTCGTAT+TGG | - | chr1_1:28751289-28751308 | Msa0017360:intron | 45.0% | |
| ! | GAAATAGCTCGTATTGGTGC+AGG | - | chr1_1:28751295-28751314 | Msa0017360:intron | 45.0% |
| GGAATCAATGCCTGTGGAAA+AGG | + | chr1_1:28752348-28752367 | None:intergenic | 45.0% | |
| ! | GCATTTGGAATCAATGCCTG+TGG | + | chr1_1:28752354-28752373 | None:intergenic | 45.0% |
| TGCAAAGTACATTGCTCCCA+AGG | + | chr1_1:28752697-28752716 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | - | chr1_1:28752862-28752881 | Msa0017360:intron | 45.0% | |
| ! | CTGACTCAGTTGATGCATGA+TGG | - | chr1_1:28753137-28753156 | Msa0017360:CDS | 45.0% |
| CTTCAGTGGTTCAAAGGCAA+AGG | - | chr1_1:28753244-28753263 | Msa0017360:CDS | 45.0% | |
| GGCACAGTGCATTAGGATCT+TGG | - | chr1_1:28751199-28751218 | Msa0017360:CDS | 50.0% | |
| ! | CTTGGTAACAGGTGCTCCTT+TGG | - | chr1_1:28751596-28751615 | Msa0017360:CDS | 50.0% |
| GTCTCACATCTTATGGTGGC+AGG | + | chr1_1:28752134-28752153 | None:intergenic | 50.0% | |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | - | chr1_1:28752335-28752354 | Msa0017360:CDS | 50.0% |
| CTCCCAAGGAAAACACCATG+TGG | + | chr1_1:28752683-28752702 | None:intergenic | 50.0% | |
| !! | GATGGAGCATTGATGTTGGG+TGG | - | chr1_1:28752843-28752862 | Msa0017360:intron | 50.0% |
| GGGTGAAGGTTCTCAATGAG+TGG | - | chr1_1:28752876-28752895 | Msa0017360:intron | 50.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | - | chr1_1:28750642-28750661 | Msa0017360:CDS | 55.0% | |
| TGATAGGCAGAGGGGTCCTC+TGG | - | chr1_1:28750085-28750104 | Msa0017360:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28750038 | 28753307 | 28750038 | ID=Msa0017360;Name=Msa0017360 |
| chr1_1 | mRNA | 28750038 | 28753307 | 28750038 | ID=Msa0017360-mRNA-1;Parent=Msa0017360;Name=Msa0017360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.54|1|0.7|0.63|11|151|438 |
| chr1_1 | exon | 28750038 | 28750280 | 28750038 | ID=Msa0017360-mRNA-1:exon:9610;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28750428 | 28750501 | 28750428 | ID=Msa0017360-mRNA-1:exon:9609;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28750588 | 28750721 | 28750588 | ID=Msa0017360-mRNA-1:exon:9608;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28750966 | 28751037 | 28750966 | ID=Msa0017360-mRNA-1:exon:9607;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28751149 | 28751218 | 28751149 | ID=Msa0017360-mRNA-1:exon:9606;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28751493 | 28751738 | 28751493 | ID=Msa0017360-mRNA-1:exon:9605;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28751853 | 28751942 | 28751853 | ID=Msa0017360-mRNA-1:exon:9604;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28752028 | 28752093 | 28752028 | ID=Msa0017360-mRNA-1:exon:9603;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28752227 | 28752390 | 28752227 | ID=Msa0017360-mRNA-1:exon:9602;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28752674 | 28752750 | 28752674 | ID=Msa0017360-mRNA-1:exon:9601;Parent=Msa0017360-mRNA-1 |
| chr1_1 | exon | 28753076 | 28753307 | 28753076 | ID=Msa0017360-mRNA-1:exon:9600;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28753076 | 28753307 | 28753076 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28752674 | 28752750 | 28752674 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28752227 | 28752390 | 28752227 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28752028 | 28752093 | 28752028 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28751853 | 28751942 | 28751853 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28751493 | 28751738 | 28751493 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28751149 | 28751218 | 28751149 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28750966 | 28751037 | 28750966 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28750588 | 28750721 | 28750588 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28750428 | 28750501 | 28750428 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | CDS | 28750189 | 28750280 | 28750189 | ID=Msa0017360-mRNA-1:cds;Parent=Msa0017360-mRNA-1 |
| chr1_1 | three_prime_UTR | 28750038 | 28750188 | 28750038 | ID=Msa0017360-mRNA-1:three_prime_utr;Parent=Msa0017360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
