Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154970 | XP_013467157.1 | 87.472 | 439 | 34 | 3 | 3 | 438 | 7 | 427 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154970 | sp|Q5R533|SERC3_PONAB | 25.622 | 402 | 220 | 15 | 84 | 421 | 84 | 470 | 3.26e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154970 | A0A072VIB5 | 87.472 | 439 | 34 | 3 | 3 | 438 | 7 | 427 | 0.0 | 750 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017360 | Msa0154970 | 0.955010 | 8.098419e-113 | -8.615850e-47 |
| Msa0065580 | Msa0154970 | 0.848276 | 6.796102e-60 | -8.615850e-47 |
| Msa0111030 | Msa0154970 | 0.842201 | 2.988073e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154970 | MtrunA17_Chr1g0169271 | 87.472 | 439 | 34 | 3 | 3 | 438 | 7 | 427 | 0.0 | 750 |
| Msa0154970 | MtrunA17_Chr8g0390691 | 45.865 | 399 | 190 | 7 | 24 | 417 | 11 | 388 | 8.88e-113 | 337 |
| Msa0154970 | MtrunA17_Chr6g0485111 | 45.063 | 395 | 188 | 9 | 39 | 425 | 28 | 401 | 3.16e-108 | 325 |
| Msa0154970 | MtrunA17_Chr2g0287641 | 28.463 | 397 | 244 | 6 | 47 | 421 | 28 | 406 | 5.76e-45 | 161 |
| Msa0154970 | MtrunA17_Chr7g0237091 | 27.431 | 401 | 242 | 12 | 47 | 421 | 31 | 408 | 3.67e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154970 | AT2G33205.1 | 55.046 | 436 | 161 | 6 | 1 | 425 | 1 | 412 | 3.83e-162 | 464 |
| Msa0154970 | AT2G33205.8 | 54.795 | 438 | 161 | 7 | 1 | 425 | 1 | 414 | 3.05e-160 | 459 |
| Msa0154970 | AT2G33205.5 | 54.795 | 438 | 161 | 7 | 1 | 425 | 1 | 414 | 3.05e-160 | 459 |
| Msa0154970 | AT2G33205.9 | 54.869 | 421 | 153 | 7 | 1 | 408 | 1 | 397 | 3.82e-152 | 437 |
| Msa0154970 | AT2G33205.6 | 53.149 | 397 | 149 | 7 | 1 | 384 | 1 | 373 | 6.24e-135 | 392 |
| Msa0154970 | AT2G33205.2 | 56.342 | 339 | 113 | 6 | 98 | 425 | 5 | 319 | 1.18e-122 | 360 |
| Msa0154970 | AT2G33205.7 | 56.707 | 328 | 107 | 6 | 109 | 425 | 1 | 304 | 1.42e-119 | 351 |
| Msa0154970 | AT3G24460.2 | 43.250 | 400 | 189 | 6 | 35 | 421 | 28 | 402 | 4.99e-110 | 330 |
| Msa0154970 | AT3G24460.1 | 43.250 | 400 | 189 | 6 | 35 | 421 | 28 | 402 | 4.99e-110 | 330 |
| Msa0154970 | AT2G33205.3 | 50.568 | 352 | 139 | 6 | 1 | 341 | 1 | 328 | 7.01e-109 | 325 |
| Msa0154970 | AT2G33205.4 | 50.568 | 352 | 139 | 6 | 1 | 341 | 1 | 328 | 7.01e-109 | 325 |
| Msa0154970 | AT4G13345.1 | 44.792 | 384 | 178 | 5 | 47 | 421 | 33 | 391 | 9.26e-108 | 324 |
| Msa0154970 | AT4G13345.2 | 44.271 | 384 | 180 | 5 | 47 | 421 | 33 | 391 | 5.97e-107 | 322 |
| Msa0154970 | AT4G13345.6 | 44.271 | 384 | 180 | 5 | 47 | 421 | 33 | 391 | 5.97e-107 | 322 |
| Msa0154970 | AT4G13345.4 | 44.744 | 371 | 171 | 5 | 47 | 408 | 33 | 378 | 2.60e-101 | 308 |
| Msa0154970 | AT4G13345.5 | 42.939 | 347 | 164 | 5 | 47 | 384 | 33 | 354 | 3.08e-86 | 268 |
| Msa0154970 | AT4G13345.3 | 40.288 | 278 | 132 | 5 | 47 | 315 | 33 | 285 | 2.21e-52 | 178 |
| Msa0154970 | AT4G13345.7 | 40.288 | 278 | 132 | 5 | 47 | 315 | 33 | 285 | 2.21e-52 | 178 |
| Msa0154970 | AT3G06170.1 | 28.788 | 396 | 243 | 7 | 47 | 421 | 29 | 406 | 8.86e-41 | 150 |
| Msa0154970 | AT1G16180.2 | 26.065 | 399 | 252 | 8 | 47 | 421 | 31 | 410 | 1.80e-31 | 125 |
| Msa0154970 | AT1G16180.1 | 26.065 | 399 | 252 | 8 | 47 | 421 | 31 | 410 | 1.80e-31 | 125 |
Find 78 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACGCCCGTTATTATTT+TGG | 0.172149 | 1_4:-19830602 | Msa0154970:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1_4:-19828414 | Msa0154970:intron |
| AACCACTATTTCCAATTTCT+TGG | 0.209768 | 1_4:+19828612 | None:intergenic |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1_4:+19828634 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1_4:+19828451 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1_4:-19828453 | Msa0154970:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1_4:+19829336 | None:intergenic |
| GAGACAAATAACCAAGAAAT+TGG | 0.290791 | 1_4:-19828623 | Msa0154970:CDS |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1_4:-19829679 | Msa0154970:CDS |
| CTTGGTAACAGGTGCTCCTT+TGG | 0.300859 | 1_4:-19829176 | Msa0154970:intron |
| GTGATTTACCTGAAAGCATT+TGG | 0.310592 | 1_4:+19828406 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1_4:-19829036 | Msa0154970:CDS |
| CAATTGCAAATATGGCAATA+AGG | 0.374529 | 1_4:+19828459 | None:intergenic |
| AACCAAGAAATTGGAAATAG+TGG | 0.389373 | 1_4:-19828614 | Msa0154970:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1_4:+19828641 | None:intergenic |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1_4:-19829328 | Msa0154970:CDS |
| GGGGTTCTCCGTGTGAGTTT+AGG | 0.395668 | 1_4:-19830130 | Msa0154970:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1_4:+19827690 | None:intergenic |
| GAAAGGTTCTTACATAGAAA+TGG | 0.401222 | 1_4:-19829525 | Msa0154970:intron |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1_4:-19828059 | Msa0154970:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1_4:-19830184 | Msa0154970:intron |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1_4:+19828427 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1_4:-19830666 | Msa0154970:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1_4:-19828060 | Msa0154970:CDS |
| ATAGTATACCTTTGAATGTA+AGG | 0.434180 | 1_4:+19829007 | None:intergenic |
| TGATAGGCAGAGGGGTCCTC+TGG | 0.434826 | 1_4:-19830687 | Msa0154970:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1_4:-19829759 | Msa0154970:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.454260 | 1_4:+19830595 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1_4:-19830175 | Msa0154970:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1_4:-19828121 | Msa0154970:CDS |
| TTTATATTGGTGCTATATGT+GGG | 0.469364 | 1_4:-19829133 | Msa0154970:CDS |
| ATATTGTTCATGTTAGTGAT+AGG | 0.469895 | 1_4:-19830703 | Msa0154970:CDS |
| GAAATAGCTCGTATTGGTGC+AGG | 0.472544 | 1_4:-19829477 | Msa0154970:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1_4:+19830594 | None:intergenic |
| GCAGGTGAAATAGCTCGTAT+TGG | 0.478741 | 1_4:-19829483 | Msa0154970:CDS |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1_4:-19827685 | Msa0154970:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1_4:-19829015 | Msa0154970:CDS |
| ATAGAACTTACAACGAATCC+AGG | 0.494801 | 1_4:+19830514 | None:intergenic |
| ATTAATCTTCAGTGGTTCAA+AGG | 0.498219 | 1_4:-19827534 | Msa0154970:three_prime_UTR |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1_4:-19829771 | Msa0154970:CDS |
| AAGAAATTGGAAATAGTGGT+TGG | 0.507471 | 1_4:-19828610 | Msa0154970:CDS |
| TTCATGTTAGTGATAGGCAG+AGG | 0.526988 | 1_4:-19830697 | Msa0154970:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1_4:+19829682 | None:intergenic |
| TTAGATGGAGCATTGATGTT+GGG | 0.535180 | 1_4:-19827932 | Msa0154970:intron |
| CTGACTCAGTTGATGCATGA+TGG | 0.552921 | 1_4:-19827635 | Msa0154970:exon |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1_4:+19829694 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1_4:+19828078 | None:intergenic |
| AAATAGTAATTAATCTTCAG+TGG | 0.561162 | 1_4:-19827542 | Msa0154970:three_prime_UTR |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1_4:-19829755 | Msa0154970:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1_4:+19829683 | None:intergenic |
| CTTAGATGGAGCATTGATGT+TGG | 0.573927 | 1_4:-19827933 | Msa0154970:intron |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1_4:-19829756 | Msa0154970:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1_4:+19828637 | None:intergenic |
| CTTCAGTGGTTCAAAGGCAA+AGG | 0.585598 | 1_4:-19827528 | Msa0154970:three_prime_UTR |
| GATAATGATACAACTATGCA+AGG | 0.586049 | 1_4:-19827663 | Msa0154970:CDS |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1_4:-19827917 | Msa0154970:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1_4:-19830568 | Msa0154970:CDS |
| TCATGTTAGTGATAGGCAGA+GGG | 0.592097 | 1_4:-19830696 | Msa0154970:CDS |
| ATGGACAAAGTGTTCTACCC+TGG | 0.592870 | 1_4:-19830532 | Msa0154970:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1_4:-19827896 | Msa0154970:CDS |
| GATGGAGCATTGATGTTGGG+TGG | 0.603110 | 1_4:-19827929 | Msa0154970:CDS |
| AAATTGTACAAATATATGGT+TGG | 0.611451 | 1_4:-19829675 | Msa0154970:intron |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1_4:+19830540 | None:intergenic |
| TTGAAGAATGAGTGCATCTG+AGG | 0.616765 | 1_4:-19830741 | None:intergenic |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1_4:+19830671 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1_4:-19827910 | Msa0154970:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1_4:-19829784 | Msa0154970:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1_4:+19828421 | None:intergenic |
| TAGAACTTACAACGAATCCA+GGG | 0.632769 | 1_4:+19830515 | None:intergenic |
| CAAAGCATCCTAAACTCACA+CGG | 0.641175 | 1_4:+19830122 | None:intergenic |
| AAATAGCTCGTATTGGTGCA+GGG | 0.645847 | 1_4:-19829476 | Msa0154970:intron |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1_4:-19830740 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1_4:+19828092 | None:intergenic |
| AGTTGATGCATGATGGACAA+TGG | 0.666240 | 1_4:-19827628 | Msa0154970:exon |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1_4:+19829160 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1_4:+19829040 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1_4:-19827916 | Msa0154970:CDS |
| CATGTTAGTGATAGGCAGAG+GGG | 0.724209 | 1_4:-19830695 | Msa0154970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGAAAAAAATATATTTA+TGG | - | chr1_4:19828627-19828646 | Msa0154970:CDS | 10.0% |
| !! | AATAATTAAGAAAAAATACA+AGG | + | chr1_4:19829278-19829297 | None:intergenic | 10.0% |
| !! | AAATGTACATTATTAATATA+AGG | + | chr1_4:19830263-19830282 | None:intergenic | 10.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | + | chr1_4:19827630-19827649 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | - | chr1_4:19829280-19829299 | Msa0154970:intron | 15.0% |
| !! | ACTAATTATTTCAACATATA+GGG | + | chr1_4:19830038-19830057 | None:intergenic | 15.0% |
| !! | AACTAATTATTTCAACATAT+AGG | + | chr1_4:19830039-19830058 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | - | chr1_4:19830496-19830515 | Msa0154970:intron | 15.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | + | chr1_4:19827629-19827648 | None:intergenic | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | + | chr1_4:19828230-19828249 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | - | chr1_4:19828499-19828518 | Msa0154970:intron | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | + | chr1_4:19828541-19828560 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | + | chr1_4:19828542-19828561 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | - | chr1_4:19828542-19828561 | Msa0154970:intron | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | - | chr1_4:19828546-19828565 | Msa0154970:intron | 20.0% |
| !!! | ATTTAAGTTGATGATTACAT+AGG | - | chr1_4:19828830-19828849 | Msa0154970:intron | 20.0% |
| !!! | ATATTAACATGTTATTGACT+TGG | - | chr1_4:19829027-19829046 | Msa0154970:CDS | 20.0% |
| !!! | TTAATATATTTTTCATCGCA+TGG | - | chr1_4:19829157-19829176 | Msa0154970:CDS | 20.0% |
| !!! | TCAAAAGTGACAATATTTTT+AGG | - | chr1_4:19829393-19829412 | Msa0154970:intron | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+CGG | - | chr1_4:19829419-19829438 | Msa0154970:intron | 20.0% |
| !! | TAGATACATTCTAATTCATA+TGG | + | chr1_4:19829699-19829718 | None:intergenic | 20.0% |
| !! | TCTATAATCTCATACTATAA+AGG | - | chr1_4:19829715-19829734 | Msa0154970:CDS | 20.0% |
| !!! | ATACTTTACATGCTTTAAAT+GGG | + | chr1_4:19829864-19829883 | None:intergenic | 20.0% |
| !!! | TATACTTTACATGCTTTAAA+TGG | + | chr1_4:19829865-19829884 | None:intergenic | 20.0% |
| !!! | TTTGAGAAATTAATTTGAGA+TGG | + | chr1_4:19829955-19829974 | None:intergenic | 20.0% |
| !! | CTAATTATTTCAACATATAG+GGG | + | chr1_4:19830037-19830056 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGAAAACTGTTA+AGG | + | chr1_4:19830067-19830086 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAGCTTTATTTT+TGG | + | chr1_4:19830080-19830099 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | + | chr1_4:19830414-19830433 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | + | chr1_4:19830415-19830434 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | + | chr1_4:19830474-19830493 | None:intergenic | 20.0% |
| !! | AAATAGTAATTAATCTTCAG+TGG | - | chr1_4:19830679-19830698 | Msa0154970:CDS | 20.0% |
| ! | ATATTGTTCATGTTAGTGAT+AGG | - | chr1_4:19827518-19827537 | Msa0154970:three_prime_UTR | 25.0% |
| !! | AAAATGCTAGTGTCTAAAAT+TGG | + | chr1_4:19827746-19827765 | None:intergenic | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | + | chr1_4:19828029-19828048 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | - | chr1_4:19828037-19828056 | Msa0154970:CDS | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | - | chr1_4:19828069-19828088 | Msa0154970:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | - | chr1_4:19828070-19828089 | Msa0154970:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | - | chr1_4:19828071-19828090 | Msa0154970:CDS | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | - | chr1_4:19828226-19828245 | Msa0154970:intron | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | + | chr1_4:19828322-19828341 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | + | chr1_4:19828389-19828408 | None:intergenic | 25.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | - | chr1_4:19828437-19828456 | Msa0154970:CDS | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | + | chr1_4:19828587-19828606 | None:intergenic | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | + | chr1_4:19828888-19828907 | None:intergenic | 25.0% |
| !! | TTTCTATGAATGCTTTTGAA+GGG | + | chr1_4:19828992-19829011 | None:intergenic | 25.0% |
| !! | ATTTCTATGAATGCTTTTGA+AGG | + | chr1_4:19828993-19829012 | None:intergenic | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | - | chr1_4:19829075-19829094 | Msa0154970:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | - | chr1_4:19829087-19829106 | Msa0154970:CDS | 25.0% |
| !!! | TTTATATTGGTGCTATATGT+GGG | - | chr1_4:19829088-19829107 | Msa0154970:CDS | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | + | chr1_4:19829217-19829236 | None:intergenic | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | - | chr1_4:19829339-19829358 | Msa0154970:CDS | 25.0% |
| ! | AAGCAATCATGTGATAAATT+AGG | + | chr1_4:19830218-19830237 | None:intergenic | 25.0% |
| ! | TTTATCACATGATTGCTTTA+AGG | - | chr1_4:19830220-19830239 | Msa0154970:intron | 25.0% |
| !! | TGTACATTTTATACCTTAGA+TGG | - | chr1_4:19830274-19830293 | Msa0154970:intron | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | + | chr1_4:19830413-19830432 | None:intergenic | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | + | chr1_4:19830473-19830492 | None:intergenic | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | + | chr1_4:19830475-19830494 | None:intergenic | 25.0% |
| ! | AGTAGCAAAAAATTAAAAGG+AGG | + | chr1_4:19830637-19830656 | None:intergenic | 25.0% |
| ! | ACGAGTAGCAAAAAATTAAA+AGG | + | chr1_4:19830640-19830659 | None:intergenic | 25.0% |
| GGAAGAAGTAATATCTTCAT+TGG | - | chr1_4:19827555-19827574 | Msa0154970:three_prime_UTR | 30.0% | |
| ! | TGATAATGAATCTTGTTGCA+TGG | - | chr1_4:19827653-19827672 | Msa0154970:CDS | 30.0% |
| CTATTACAGTTGTTTAACTG+TGG | - | chr1_4:19827771-19827790 | Msa0154970:intron | 30.0% | |
| !!! | AGTTTTAAAGATCACATCGA+AGG | + | chr1_4:19827875-19827894 | None:intergenic | 30.0% |
| ATCAAAGTTTGTGGAAATGA+AGG | - | chr1_4:19828046-19828065 | Msa0154970:CDS | 30.0% | |
| ! | TGATTGTTTTCATTCATTGG+GGG | - | chr1_4:19828072-19828091 | Msa0154970:CDS | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | - | chr1_4:19828169-19828188 | Msa0154970:intron | 30.0% |
| ATGTATACCAGTAACATGTT+TGG | + | chr1_4:19828198-19828217 | None:intergenic | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | - | chr1_4:19828450-19828469 | Msa0154970:CDS | 30.0% | |
| !!! | GGTCAATTTTGTTTTGAGAA+AGG | - | chr1_4:19828679-19828698 | Msa0154970:intron | 30.0% |
| GAAAGGTTCTTACATAGAAA+TGG | - | chr1_4:19828696-19828715 | Msa0154970:intron | 30.0% | |
| !! | TCTAACTTCTATGTTTTTGC+AGG | - | chr1_4:19828720-19828739 | Msa0154970:intron | 30.0% |
| ! | CTTTCATTCACTTCAAGTTA+TGG | - | chr1_4:19828787-19828806 | Msa0154970:intron | 30.0% |
| CATCAACTTAAATAGTTAGC+TGG | + | chr1_4:19828823-19828842 | None:intergenic | 30.0% | |
| ! | GTGTGATCCATTTTATCATT+TGG | - | chr1_4:19828878-19828897 | Msa0154970:intron | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | - | chr1_4:19828881-19828900 | Msa0154970:intron | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | - | chr1_4:19828893-19828912 | Msa0154970:intron | 30.0% |
| AATTACAGCAAGAAGAATTG+CGG | + | chr1_4:19829184-19829203 | None:intergenic | 30.0% | |
| ! | AATTCTTCTTGCTGTAATTC+TGG | - | chr1_4:19829185-19829204 | Msa0154970:intron | 30.0% |
| TACATTGACATGAAAAATCC+TGG | - | chr1_4:19829243-19829262 | Msa0154970:intron | 30.0% | |
| AATACAAGGAATGAAAAACC+AGG | + | chr1_4:19829264-19829283 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | - | chr1_4:19829290-19829309 | Msa0154970:intron | 30.0% | |
| ! | TCTTTTATCCTCAGGAATTA+TGG | - | chr1_4:19829313-19829332 | Msa0154970:CDS | 30.0% |
| GTTATTTGTCTCACATCTTA+TGG | + | chr1_4:19829590-19829609 | None:intergenic | 30.0% | |
| GAGACAAATAACCAAGAAAT+TGG | - | chr1_4:19829598-19829617 | Msa0154970:intron | 30.0% | |
| AACCAAGAAATTGGAAATAG+TGG | - | chr1_4:19829607-19829626 | Msa0154970:intron | 30.0% | |
| AACCACTATTTCCAATTTCT+TGG | + | chr1_4:19829612-19829631 | None:intergenic | 30.0% | |
| AAGAAATTGGAAATAGTGGT+TGG | - | chr1_4:19829611-19829630 | Msa0154970:intron | 30.0% | |
| AATAAGGAATCCCTATTAAG+AGG | + | chr1_4:19829749-19829768 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | + | chr1_4:19829765-19829784 | None:intergenic | 30.0% | |
| ! | TGCCATATTTGCAATTGTTT+TGG | - | chr1_4:19829768-19829787 | Msa0154970:CDS | 30.0% |
| AGCCAAAACAATTGCAAATA+TGG | + | chr1_4:19829773-19829792 | None:intergenic | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | - | chr1_4:19830161-19830180 | Msa0154970:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | - | chr1_4:19830162-19830181 | Msa0154970:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | - | chr1_4:19830190-19830209 | Msa0154970:intron | 30.0% | |
| GATAATGATACAACTATGCA+AGG | - | chr1_4:19830558-19830577 | Msa0154970:CDS | 30.0% | |
| ATTAATCTTCAGTGGTTCAA+AGG | - | chr1_4:19830687-19830706 | Msa0154970:CDS | 30.0% | |
| GAAGATATTACTTCTTCCAG+AGG | + | chr1_4:19827553-19827572 | None:intergenic | 35.0% | |
| GAACACTTTGTCCATAATCA+CGG | + | chr1_4:19827684-19827703 | None:intergenic | 35.0% | |
| TAGAACTTACAACGAATCCA+GGG | + | chr1_4:19827709-19827728 | None:intergenic | 35.0% | |
| ATAGAACTTACAACGAATCC+AGG | + | chr1_4:19827710-19827729 | None:intergenic | 35.0% | |
| ! | TAGATGTGTGTTTGGTTTCT+CGG | + | chr1_4:19827944-19827963 | None:intergenic | 35.0% |
| AGCTAGATTAGATGTGTGTT+TGG | + | chr1_4:19827952-19827971 | None:intergenic | 35.0% | |
| ! | AGAATGCTACGATTAGTCAT+TGG | - | chr1_4:19827992-19828011 | Msa0154970:intron | 35.0% |
| ATAATTTCTCGTGAAGCATG+TGG | + | chr1_4:19828140-19828159 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | - | chr1_4:19828208-19828227 | Msa0154970:intron | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | - | chr1_4:19828423-19828442 | Msa0154970:CDS | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | - | chr1_4:19828462-19828481 | Msa0154970:CDS | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | + | chr1_4:19828530-19828549 | None:intergenic | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | - | chr1_4:19828641-19828660 | Msa0154970:CDS | 35.0% | |
| ATTAGGATCTTGGTTATAGC+TGG | - | chr1_4:19828658-19828677 | Msa0154970:intron | 35.0% | |
| !! | CTTTTGAAGGGATAGCAAAA+TGG | + | chr1_4:19828980-19828999 | None:intergenic | 35.0% |
| !! | CATGTTATTGACTTGGTAAC+AGG | - | chr1_4:19829034-19829053 | Msa0154970:CDS | 35.0% |
| GGTCATATCCTTACATTCAA+AGG | - | chr1_4:19829206-19829225 | Msa0154970:intron | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | + | chr1_4:19829587-19829606 | None:intergenic | 35.0% | |
| !! | GATTGTGTATGAACTTGTTG+TGG | + | chr1_4:19829674-19829693 | None:intergenic | 35.0% |
| ! | AGGTCTTTTGTCCTCTTAAT+AGG | - | chr1_4:19829735-19829754 | Msa0154970:CDS | 35.0% |
| ! | GGTCTTTTGTCCTCTTAATA+GGG | - | chr1_4:19829736-19829755 | Msa0154970:CDS | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | - | chr1_4:19829807-19829826 | Msa0154970:CDS | 35.0% |
| !! | GTGATTTACCTGAAAGCATT+TGG | + | chr1_4:19829818-19829837 | None:intergenic | 35.0% |
| GATGATATTCCTTACAGCTA+TGG | - | chr1_4:19830100-19830119 | Msa0154970:intron | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | + | chr1_4:19830112-19830131 | None:intergenic | 35.0% | |
| !! | TTAGATGGAGCATTGATGTT+GGG | - | chr1_4:19830289-19830308 | Msa0154970:intron | 35.0% |
| AATGAAAATGAGTTAGGGGT+GGG | + | chr1_4:19830469-19830488 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | + | chr1_4:19830534-19830553 | None:intergenic | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | - | chr1_4:19830536-19830555 | Msa0154970:CDS | 35.0% | |
| TTCATGTTAGTGATAGGCAG+AGG | - | chr1_4:19827524-19827543 | Msa0154970:three_prime_UTR | 40.0% | |
| TCATGTTAGTGATAGGCAGA+GGG | - | chr1_4:19827525-19827544 | Msa0154970:three_prime_UTR | 40.0% | |
| ! | CTTCACGCCCGTTATTATTT+TGG | - | chr1_4:19827619-19827638 | Msa0154970:exon | 40.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | - | chr1_4:19827670-19827689 | Msa0154970:CDS | 40.0% |
| TTTAACTGTGGTTGCGATTG+CGG | - | chr1_4:19827783-19827802 | Msa0154970:intron | 40.0% | |
| CAGCAGAATTCAGACAATTG+CGG | - | chr1_4:19827829-19827848 | Msa0154970:intron | 40.0% | |
| AGGCATCACAACAGAAATTG+CGG | + | chr1_4:19827855-19827874 | None:intergenic | 40.0% | |
| ! | CAAAGCATCCTAAACTCACA+CGG | + | chr1_4:19828102-19828121 | None:intergenic | 40.0% |
| ATTCATGGCATTCTAGATGG+TGG | - | chr1_4:19828465-19828484 | Msa0154970:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | - | chr1_4:19828466-19828485 | Msa0154970:CDS | 40.0% | |
| ! | ATCTGACTTTTCTCGCTACA+TGG | + | chr1_4:19828607-19828626 | None:intergenic | 40.0% |
| ! | AAATAGCTCGTATTGGTGCA+GGG | - | chr1_4:19828745-19828764 | Msa0154970:intron | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | + | chr1_4:19828922-19828941 | None:intergenic | 40.0% |
| CAGACGAAGAAACGAAAAAG+AGG | - | chr1_4:19828920-19828939 | Msa0154970:intron | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | + | chr1_4:19829064-19829083 | None:intergenic | 40.0% | |
| ! | CATAGAGGTCTTTTATCCTC+AGG | - | chr1_4:19829305-19829324 | Msa0154970:CDS | 40.0% |
| GTAAGAAGCCATAATTCCTG+AGG | + | chr1_4:19829324-19829343 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | - | chr1_4:19829354-19829373 | Msa0154970:CDS | 40.0% | |
| ! | CAGCTATGGATTTTTCCACA+TGG | - | chr1_4:19830114-19830133 | Msa0154970:intron | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | - | chr1_4:19830126-19830145 | Msa0154970:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | - | chr1_4:19830127-19830146 | Msa0154970:CDS | 40.0% |
| CAACATCAATGCTCCATCTA+AGG | + | chr1_4:19830290-19830309 | None:intergenic | 40.0% | |
| !! | CTTAGATGGAGCATTGATGT+TGG | - | chr1_4:19830288-19830307 | Msa0154970:intron | 40.0% |
| ATGTTGGGTGGATAAGTACA+TGG | - | chr1_4:19830304-19830323 | Msa0154970:intron | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | - | chr1_4:19830305-19830324 | Msa0154970:intron | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | + | chr1_4:19830470-19830489 | None:intergenic | 40.0% | |
| !! | AGTTGATGCATGATGGACAA+TGG | - | chr1_4:19830593-19830612 | Msa0154970:CDS | 40.0% |
| CATGTTAGTGATAGGCAGAG+GGG | - | chr1_4:19827526-19827545 | Msa0154970:three_prime_UTR | 45.0% | |
| ! | ATGGACAAAGTGTTCTACCC+TGG | - | chr1_4:19827689-19827708 | Msa0154970:CDS | 45.0% |
| GAAGCATGTGGCATAATCGA+AGG | + | chr1_4:19828128-19828147 | None:intergenic | 45.0% | |
| ACGGACACCAAACATGTTAC+TGG | - | chr1_4:19828188-19828207 | Msa0154970:intron | 45.0% | |
| GCAGGTGAAATAGCTCGTAT+TGG | - | chr1_4:19828738-19828757 | Msa0154970:intron | 45.0% | |
| ! | GAAATAGCTCGTATTGGTGC+AGG | - | chr1_4:19828744-19828763 | Msa0154970:intron | 45.0% |
| GGAATCAATGCCTGTGGAAA+AGG | + | chr1_4:19829797-19829816 | None:intergenic | 45.0% | |
| ! | GCATTTGGAATCAATGCCTG+TGG | + | chr1_4:19829803-19829822 | None:intergenic | 45.0% |
| TGCAAAGTACATTGCTCCCA+AGG | + | chr1_4:19830146-19830165 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | - | chr1_4:19830311-19830330 | Msa0154970:intron | 45.0% | |
| ! | CTGACTCAGTTGATGCATGA+TGG | - | chr1_4:19830586-19830605 | Msa0154970:CDS | 45.0% |
| CTTCAGTGGTTCAAAGGCAA+AGG | - | chr1_4:19830693-19830712 | Msa0154970:CDS | 45.0% | |
| GGCACAGTGCATTAGGATCT+TGG | - | chr1_4:19828648-19828667 | Msa0154970:CDS | 50.0% | |
| ! | CTTGGTAACAGGTGCTCCTT+TGG | - | chr1_4:19829045-19829064 | Msa0154970:CDS | 50.0% |
| GTCTCACATCTTATGGTGGC+AGG | + | chr1_4:19829583-19829602 | None:intergenic | 50.0% | |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | - | chr1_4:19829784-19829803 | Msa0154970:CDS | 50.0% |
| CTCCCAAGGAAAACACCATG+TGG | + | chr1_4:19830132-19830151 | None:intergenic | 50.0% | |
| !! | GATGGAGCATTGATGTTGGG+TGG | - | chr1_4:19830292-19830311 | Msa0154970:intron | 50.0% |
| GGGTGAAGGTTCTCAATGAG+TGG | - | chr1_4:19830325-19830344 | Msa0154970:intron | 50.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | - | chr1_4:19828091-19828110 | Msa0154970:CDS | 55.0% | |
| TGATAGGCAGAGGGGTCCTC+TGG | - | chr1_4:19827534-19827553 | Msa0154970:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 19827487 | 19830756 | 19827487 | ID=Msa0154970;Name=Msa0154970 |
| chr1_4 | mRNA | 19827487 | 19830756 | 19827487 | ID=Msa0154970-mRNA-1;Parent=Msa0154970;Name=Msa0154970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.54|1|0.6|0.63|11|151|438 |
| chr1_4 | exon | 19827487 | 19827729 | 19827487 | ID=Msa0154970-mRNA-1:exon:7318;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19827877 | 19827950 | 19827877 | ID=Msa0154970-mRNA-1:exon:7317;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19828037 | 19828170 | 19828037 | ID=Msa0154970-mRNA-1:exon:7316;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19828415 | 19828486 | 19828415 | ID=Msa0154970-mRNA-1:exon:7315;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19828598 | 19828667 | 19828598 | ID=Msa0154970-mRNA-1:exon:7314;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19828942 | 19829187 | 19828942 | ID=Msa0154970-mRNA-1:exon:7313;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19829302 | 19829391 | 19829302 | ID=Msa0154970-mRNA-1:exon:7312;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19829477 | 19829542 | 19829477 | ID=Msa0154970-mRNA-1:exon:7311;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19829676 | 19829839 | 19829676 | ID=Msa0154970-mRNA-1:exon:7310;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19830123 | 19830199 | 19830123 | ID=Msa0154970-mRNA-1:exon:7309;Parent=Msa0154970-mRNA-1 |
| chr1_4 | exon | 19830525 | 19830756 | 19830525 | ID=Msa0154970-mRNA-1:exon:7308;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19830525 | 19830756 | 19830525 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19830123 | 19830199 | 19830123 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19829676 | 19829839 | 19829676 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19829477 | 19829542 | 19829477 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19829302 | 19829391 | 19829302 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19828942 | 19829187 | 19828942 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19828598 | 19828667 | 19828598 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19828415 | 19828486 | 19828415 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19828037 | 19828170 | 19828037 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19827877 | 19827950 | 19827877 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | CDS | 19827638 | 19827729 | 19827638 | ID=Msa0154970-mRNA-1:cds;Parent=Msa0154970-mRNA-1 |
| chr1_4 | three_prime_UTR | 19827487 | 19827637 | 19827487 | ID=Msa0154970-mRNA-1:three_prime_utr;Parent=Msa0154970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
