Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111030 | sp|Q5R533|SERC3_PONAB | 25.613 | 367 | 210 | 9 | 100 | 404 | 105 | 470 | 2.73e-29 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111030 | A0A072VIB5 | 93.939 | 429 | 18 | 2 | 1 | 423 | 1 | 427 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017360 | Msa0111030 | 0.837646 | 4.596382e-57 | -8.615850e-47 |
| Msa0065580 | Msa0111030 | 0.870559 | 1.331772e-66 | -8.615850e-47 |
| Msa0111030 | Msa0154970 | 0.842201 | 2.988073e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111030 | MtrunA17_Chr1g0169271 | 93.939 | 429 | 18 | 2 | 1 | 423 | 1 | 427 | 0.0 | 801 |
| Msa0111030 | MtrunA17_Chr8g0390691 | 51.261 | 357 | 165 | 4 | 51 | 400 | 34 | 388 | 5.13e-126 | 370 |
| Msa0111030 | MtrunA17_Chr6g0485111 | 48.138 | 376 | 183 | 6 | 43 | 408 | 28 | 401 | 1.37e-120 | 356 |
| Msa0111030 | MtrunA17_Chr2g0287641 | 29.058 | 382 | 240 | 6 | 51 | 404 | 28 | 406 | 1.14e-50 | 176 |
| Msa0111030 | MtrunA17_Chr7g0237091 | 28.312 | 385 | 238 | 11 | 51 | 404 | 31 | 408 | 3.44e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111030 | AT2G33205.1 | 60.945 | 402 | 149 | 3 | 21 | 415 | 19 | 419 | 4.67e-178 | 503 |
| Msa0111030 | AT2G33205.8 | 60.644 | 404 | 149 | 4 | 21 | 415 | 19 | 421 | 3.40e-176 | 499 |
| Msa0111030 | AT2G33205.5 | 60.644 | 404 | 149 | 4 | 21 | 415 | 19 | 421 | 3.40e-176 | 499 |
| Msa0111030 | AT2G33205.9 | 61.842 | 380 | 135 | 4 | 21 | 391 | 19 | 397 | 2.76e-167 | 475 |
| Msa0111030 | AT2G33205.6 | 60.393 | 356 | 131 | 4 | 21 | 367 | 19 | 373 | 1.54e-150 | 432 |
| Msa0111030 | AT2G33205.2 | 63.950 | 319 | 111 | 3 | 100 | 415 | 9 | 326 | 1.30e-146 | 420 |
| Msa0111030 | AT2G33205.7 | 64.423 | 312 | 107 | 3 | 107 | 415 | 1 | 311 | 1.34e-143 | 412 |
| Msa0111030 | AT2G33205.3 | 57.729 | 317 | 126 | 3 | 21 | 330 | 19 | 334 | 1.05e-124 | 365 |
| Msa0111030 | AT2G33205.4 | 57.729 | 317 | 126 | 3 | 21 | 330 | 19 | 334 | 1.05e-124 | 365 |
| Msa0111030 | AT3G24460.2 | 47.253 | 364 | 181 | 3 | 51 | 404 | 40 | 402 | 1.05e-120 | 357 |
| Msa0111030 | AT3G24460.1 | 47.253 | 364 | 181 | 3 | 51 | 404 | 40 | 402 | 1.05e-120 | 357 |
| Msa0111030 | AT4G13345.1 | 47.778 | 360 | 181 | 2 | 51 | 404 | 33 | 391 | 2.85e-119 | 353 |
| Msa0111030 | AT4G13345.2 | 47.222 | 360 | 183 | 2 | 51 | 404 | 33 | 391 | 4.04e-118 | 350 |
| Msa0111030 | AT4G13345.6 | 47.222 | 360 | 183 | 2 | 51 | 404 | 33 | 391 | 4.04e-118 | 350 |
| Msa0111030 | AT4G13345.4 | 47.839 | 347 | 174 | 2 | 51 | 391 | 33 | 378 | 7.07e-113 | 337 |
| Msa0111030 | AT4G13345.5 | 46.130 | 323 | 167 | 2 | 51 | 367 | 33 | 354 | 1.88e-97 | 296 |
| Msa0111030 | AT4G13345.3 | 44.094 | 254 | 135 | 2 | 51 | 298 | 33 | 285 | 6.90e-64 | 207 |
| Msa0111030 | AT4G13345.7 | 44.094 | 254 | 135 | 2 | 51 | 298 | 33 | 285 | 6.90e-64 | 207 |
| Msa0111030 | AT3G06170.1 | 28.609 | 381 | 242 | 6 | 51 | 404 | 29 | 406 | 5.44e-46 | 164 |
| Msa0111030 | AT1G16180.2 | 26.562 | 384 | 248 | 8 | 51 | 404 | 31 | 410 | 1.44e-36 | 138 |
| Msa0111030 | AT1G16180.1 | 26.562 | 384 | 248 | 8 | 51 | 404 | 31 | 410 | 1.44e-36 | 138 |
Find 72 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGCCCGTTATTATTT+TGG | 0.113799 | 1_3:+24471033 | Msa0111030:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1_3:+24473409 | Msa0111030:CDS |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1_3:-24473214 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1_3:-24473372 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1_3:+24473370 | Msa0111030:CDS |
| TCACAATTTGTACAAATATA+TGG | 0.265815 | 1_3:+24472007 | Msa0111030:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1_3:-24472287 | None:intergenic |
| TTGATTTACCTGAAAGCATT+TGG | 0.328625 | 1_3:-24473417 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1_3:+24472603 | Msa0111030:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1_3:-24473207 | None:intergenic |
| TTCTAGATGGTGGGAATTCA+AGG | 0.391262 | 1_3:+24471940 | Msa0111030:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1_3:-24474111 | None:intergenic |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1_3:+24473735 | Msa0111030:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1_3:+24471448 | Msa0111030:intron |
| CAATTGCAAATATGGCAATA+AGG | 0.413383 | 1_3:-24473364 | None:intergenic |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1_3:-24473396 | None:intergenic |
| TCATTTGGTGGAATAAGTAC+TGG | 0.422140 | 1_3:+24472295 | Msa0111030:CDS |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1_3:+24470969 | Msa0111030:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1_3:+24473734 | Msa0111030:CDS |
| AACCACTATTTCCAATGTCT+TGG | 0.431009 | 1_3:-24473236 | None:intergenic |
| AACCAAGACATTGGAAATAG+TGG | 0.433497 | 1_3:+24473234 | Msa0111030:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1_3:+24471927 | Msa0111030:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.453850 | 1_3:-24471040 | None:intergenic |
| ATAGTATACCTTTGAATGTA+AGG | 0.456135 | 1_3:-24472632 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1_3:+24471457 | Msa0111030:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1_3:+24473673 | Msa0111030:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1_3:-24471041 | None:intergenic |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1_3:+24474116 | Msa0111030:CDS |
| TGATAGGCAGAGTGTTCCTC+TGG | 0.490976 | 1_3:+24470948 | Msa0111030:CDS |
| ATTAATCTTCAGTGGTTCAA+AGG | 0.498219 | 1_3:+24474273 | Msa0111030:three_prime_UTR |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1_3:+24471915 | Msa0111030:CDS |
| GGTCATCTCCTTACATTCAA+AGG | 0.504823 | 1_3:+24472624 | Msa0111030:CDS |
| ATGGACAAAGTGTTCTACCT+TGG | 0.514469 | 1_3:+24471103 | Msa0111030:CDS |
| GCAGGCGAGATAGCTCGTAT+TGG | 0.533542 | 1_3:+24472137 | Msa0111030:intron |
| TTAGGTGGAGCATTGATGTT+GGG | 0.537476 | 1_3:+24473869 | Msa0111030:intron |
| TATATTTGTACAAATTGTGA+AGG | 0.543697 | 1_3:-24472004 | None:intergenic |
| TATGTTGGTGTGCAATCAGA+AGG | 0.545171 | 1_3:+24472772 | Msa0111030:CDS |
| AATTGTGAAGGGATGAAGAA+TGG | 0.550221 | 1_3:-24471992 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1_3:-24473716 | None:intergenic |
| AAATAGTAATTAATCTTCAG+TGG | 0.561162 | 1_3:+24474265 | Msa0111030:three_prime_UTR |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1_3:+24471931 | Msa0111030:CDS |
| GAGATAGCTCGTATTGGCGC+AGG | 0.565164 | 1_3:+24472143 | Msa0111030:CDS |
| AAGACATTGGAAATAGTGGT+TGG | 0.573163 | 1_3:+24473238 | Msa0111030:CDS |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1_3:+24471930 | Msa0111030:CDS |
| GAGACAAATAACCAAGACAT+TGG | 0.577748 | 1_3:+24473225 | Msa0111030:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1_3:-24473211 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.585126 | 1_3:+24472708 | Msa0111030:intron |
| CTTCAGTGGTTCAAAGGCAA+AGG | 0.585598 | 1_3:+24474279 | Msa0111030:three_prime_UTR |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1_3:+24473884 | Msa0111030:CDS |
| GATACAAATACAACTATGCA+AGG | 0.590595 | 1_3:+24474144 | Msa0111030:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1_3:+24471067 | Msa0111030:CDS |
| ATTAGGTGGAGCATTGATGT+TGG | 0.592264 | 1_3:+24473868 | Msa0111030:intron |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1_3:+24473905 | Msa0111030:CDS |
| ATATTTGTACAAATTGTGAA+GGG | 0.601189 | 1_3:-24472003 | None:intergenic |
| GGTGGAGCATTGATGTTGGG+TGG | 0.602838 | 1_3:+24473872 | Msa0111030:intron |
| ATCTTCATTGGAGTTAAACA+AGG | 0.603902 | 1_3:+24470981 | Msa0111030:CDS |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1_3:-24471095 | None:intergenic |
| ATAGACTTACAACGAATCCA+AGG | 0.615316 | 1_3:-24471120 | None:intergenic |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1_3:-24470964 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1_3:+24473891 | Msa0111030:CDS |
| TGCATCGGAGCAATCAGCTG+AGG | 0.626852 | 1_3:+24470894 | Msa0111030:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1_3:+24471902 | Msa0111030:CDS |
| GCATCGGAGCAATCAGCTGA+GGG | 0.629995 | 1_3:+24470895 | Msa0111030:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1_3:-24473402 | None:intergenic |
| TGTTGACACAAGCAGTCCAA+AGG | 0.637567 | 1_3:-24472479 | None:intergenic |
| TGATTGAAGAATGAGTGCAT+CGG | 0.649564 | 1_3:+24470879 | None:intergenic |
| AGTTGATGCATGATTGACAA+TGG | 0.653924 | 1_3:+24474179 | Msa0111030:exon |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1_3:-24473702 | None:intergenic |
| GTAAGAAGCCATAATTCCTG+AGG | 0.670534 | 1_3:-24472739 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1_3:-24472599 | None:intergenic |
| AGATAGCTCGTATTGGCGCA+GGG | 0.682305 | 1_3:+24472144 | Msa0111030:CDS |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1_3:+24473885 | Msa0111030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAGAAAAAATACA+AGG | - | chr1_3:24472696-24472715 | None:intergenic | 10.0% |
| !!! | ATATTATTCATTTTAGTGAT+AGG | + | chr1_3:24470932-24470951 | Msa0111030:CDS | 15.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | - | chr1_3:24471044-24471063 | None:intergenic | 15.0% |
| !!! | CTACAATATAAAAGTTTTAA+AGG | - | chr1_3:24471298-24471317 | None:intergenic | 15.0% |
| !!! | TCCATTTTTCATTTTATTAT+CGG | - | chr1_3:24471641-24471660 | None:intergenic | 15.0% |
| !! | AATAAATTGTAAGAATTAAG+AGG | - | chr1_3:24472052-24472071 | None:intergenic | 15.0% |
| !!! | TTTGTTTTCTAAAATATCTT+TGG | + | chr1_3:24472084-24472103 | Msa0111030:intron | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | + | chr1_3:24472698-24472717 | Msa0111030:intron | 15.0% |
| !! | TGTAAATTGTATTAATTAGA+AGG | + | chr1_3:24472960-24472979 | Msa0111030:intron | 15.0% |
| !!! | AGCTTTTATTTACTTTAAAT+GGG | - | chr1_3:24473466-24473485 | None:intergenic | 15.0% |
| !!! | TAGCTTTTATTTACTTTAAA+TGG | - | chr1_3:24473467-24473486 | None:intergenic | 15.0% |
| !!! | TTCATTTTCAACTTTATTTT+TGG | - | chr1_3:24473653-24473672 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1_3:24474076-24474095 | Msa0111030:intron | 15.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | - | chr1_3:24471043-24471062 | None:intergenic | 20.0% |
| !!! | AGAATCATAGTTCTAAATTT+TGG | - | chr1_3:24471321-24471340 | None:intergenic | 20.0% |
| !!! | ATGATTGTTTTCATTCATTA+GGG | + | chr1_3:24471482-24471501 | Msa0111030:CDS | 20.0% |
| !! | ACCGATAATAAAATGAAAAA+TGG | + | chr1_3:24471637-24471656 | Msa0111030:intron | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1_3:24471964-24471983 | Msa0111030:CDS | 20.0% |
| !! | ATATTTGTACAAATTGTGAA+GGG | - | chr1_3:24472006-24472025 | None:intergenic | 20.0% |
| !! | TATATTTGTACAAATTGTGA+AGG | - | chr1_3:24472007-24472026 | None:intergenic | 20.0% |
| !! | TCACAATTTGTACAAATATA+TGG | + | chr1_3:24472007-24472026 | Msa0111030:CDS | 20.0% |
| !! | AATTTGTACAAATATATGGT+TGG | + | chr1_3:24472011-24472030 | Msa0111030:intron | 20.0% |
| !! | AAAAACATTGAAGTGTATTA+TGG | - | chr1_3:24472117-24472136 | None:intergenic | 20.0% |
| !! | AGGAATAATCATAAAATCTA+AGG | + | chr1_3:24472365-24472384 | Msa0111030:intron | 20.0% |
| !!! | TTTTTTTAATCTGTGTGAAA+TGG | - | chr1_3:24472878-24472897 | None:intergenic | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+TGG | + | chr1_3:24473046-24473065 | Msa0111030:intron | 20.0% |
| !! | TTACAAATATTAACATGAGA+AGG | - | chr1_3:24473119-24473138 | None:intergenic | 20.0% |
| !! | TGTATACATTCTAATTCATA+TGG | - | chr1_3:24473301-24473320 | None:intergenic | 20.0% |
| !! | TACATAATCTCATACTATAA+AGG | + | chr1_3:24473317-24473336 | Msa0111030:intron | 20.0% |
| !! | ACTAATTATTTCAACATGTA+CGG | - | chr1_3:24473610-24473629 | None:intergenic | 20.0% |
| !!! | TATTTTTGGAAAACTGTTAA+AGG | - | chr1_3:24473639-24473658 | None:intergenic | 20.0% |
| !! | AAAAATCATCACATCTTAAA+AGG | - | chr1_3:24473810-24473829 | None:intergenic | 20.0% |
| !! | TGCATTATTAAGATACTATA+AGG | - | chr1_3:24473837-24473856 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1_3:24473994-24474013 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1_3:24473995-24474014 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1_3:24474054-24474073 | None:intergenic | 20.0% |
| !! | AAATAGTAATTAATCTTCAG+TGG | + | chr1_3:24474265-24474284 | Msa0111030:three_prime_UTR | 20.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | - | chr1_3:24471440-24471459 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1_3:24471448-24471467 | Msa0111030:intron | 25.0% |
| !! | GATGATTGTTTTCATTCATT+AGG | + | chr1_3:24471481-24471500 | Msa0111030:CDS | 25.0% |
| !! | TGATTGTTTTCATTCATTAG+GGG | + | chr1_3:24471483-24471502 | Msa0111030:CDS | 25.0% |
| ! | AACAATTGCTTTCGATAATA+GGG | - | chr1_3:24471786-24471805 | None:intergenic | 25.0% |
| ! | TAACAATTGCTTTCGATAAT+AGG | - | chr1_3:24471787-24471806 | None:intergenic | 25.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1_3:24471902-24471921 | Msa0111030:CDS | 25.0% |
| ! | GTTGTAGTTAATGTTTACAT+AGG | + | chr1_3:24472232-24472251 | Msa0111030:intron | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1_3:24472290-24472309 | None:intergenic | 25.0% |
| ! | TACATATTATTATTGCTGCA+AGG | + | chr1_3:24472345-24472364 | Msa0111030:intron | 25.0% |
| ! | TTATTGAAGGGATAACAAAA+TGG | - | chr1_3:24472423-24472442 | None:intergenic | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | + | chr1_3:24472493-24472512 | Msa0111030:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | + | chr1_3:24472505-24472524 | Msa0111030:CDS | 25.0% |
| !! | TCAATATATTTTTCATCGCA+TGG | + | chr1_3:24472575-24472594 | Msa0111030:CDS | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | - | chr1_3:24472635-24472654 | None:intergenic | 25.0% |
| ! | TACATTGACATGAAAAATTC+TGG | + | chr1_3:24472661-24472680 | Msa0111030:intron | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | + | chr1_3:24472757-24472776 | Msa0111030:CDS | 25.0% |
| ! | GTTGACTACAATTGATTAAA+AGG | - | chr1_3:24472822-24472841 | None:intergenic | 25.0% |
| ! | GATAATTGAAAGAAAGAAGA+TGG | + | chr1_3:24472906-24472925 | Msa0111030:intron | 25.0% |
| !! | TCAAAAGTGACAATCTTTTT+AGG | + | chr1_3:24473020-24473039 | Msa0111030:intron | 25.0% |
| ! | TTTGAGAGATTAACTTTAGA+TGG | - | chr1_3:24473521-24473540 | None:intergenic | 25.0% |
| ! | CTAATTATTTCAACATGTAC+GGG | - | chr1_3:24473609-24473628 | None:intergenic | 25.0% |
| ! | AAGGAATGATGTGATAAATT+AGG | - | chr1_3:24473791-24473810 | None:intergenic | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1_3:24473993-24474012 | None:intergenic | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1_3:24474053-24474072 | None:intergenic | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1_3:24474055-24474074 | None:intergenic | 25.0% |
| ! | AGTAGCAAAAAATTAAAAGG+AGG | - | chr1_3:24474223-24474242 | None:intergenic | 25.0% |
| ! | ACGAGTAGCAAAAAATTAAA+AGG | - | chr1_3:24474226-24474245 | None:intergenic | 25.0% |
| GGAAGAAGTAATATCTTCAT+TGG | + | chr1_3:24470969-24470988 | Msa0111030:CDS | 30.0% | |
| ATCTTCATTGGAGTTAAACA+AGG | + | chr1_3:24470981-24471000 | Msa0111030:CDS | 30.0% | |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1_3:24471067-24471086 | Msa0111030:CDS | 30.0% |
| ! | ATTTTCAATGCTTTTCCGAT+TGG | + | chr1_3:24471141-24471160 | Msa0111030:intron | 30.0% |
| !!! | AGTTTTAAAGGTTACTTCGA+AGG | - | chr1_3:24471286-24471305 | None:intergenic | 30.0% |
| AAGTTACCAATGACTAATCT+TGG | - | chr1_3:24471412-24471431 | None:intergenic | 30.0% | |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1_3:24471457-24471476 | Msa0111030:CDS | 30.0% | |
| ATAATTCCTCATGAAGTATG+TGG | - | chr1_3:24471551-24471570 | None:intergenic | 30.0% | |
| !! | ATGAAGTATTGACACAAACA+CGG | + | chr1_3:24471580-24471599 | Msa0111030:intron | 30.0% |
| ATGAATACCAGTAACATGTT+CGG | - | chr1_3:24471609-24471628 | None:intergenic | 30.0% | |
| TTCTTAGCACAGTAAAAACA+AGG | + | chr1_3:24471888-24471907 | Msa0111030:CDS | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | + | chr1_3:24471915-24471934 | Msa0111030:CDS | 30.0% | |
| !! | ATACACTTCAATGTTTTTGC+AGG | + | chr1_3:24472119-24472138 | Msa0111030:intron | 30.0% |
| CTTTCATTCACTTGAAGTTA+TGG | + | chr1_3:24472189-24472208 | Msa0111030:intron | 30.0% | |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1_3:24472280-24472299 | Msa0111030:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1_3:24472283-24472302 | Msa0111030:CDS | 30.0% |
| TTTCTGTGAAGGTTATTGAA+GGG | - | chr1_3:24472435-24472454 | None:intergenic | 30.0% | |
| ATTTCTGTGAAGGTTATTGA+AGG | - | chr1_3:24472436-24472455 | None:intergenic | 30.0% | |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1_3:24472602-24472621 | None:intergenic | 30.0% | |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1_3:24472603-24472622 | Msa0111030:CDS | 30.0% |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1_3:24472708-24472727 | Msa0111030:intron | 30.0% | |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1_3:24472731-24472750 | Msa0111030:CDS | 30.0% |
| CAATTGATTAAAAGGAGACA+AGG | - | chr1_3:24472814-24472833 | None:intergenic | 30.0% | |
| ! | AAAGAATAATAACTTGCGAG+TGG | + | chr1_3:24472937-24472956 | Msa0111030:intron | 30.0% |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1_3:24473217-24473236 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1_3:24473367-24473386 | None:intergenic | 30.0% | |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1_3:24473370-24473389 | Msa0111030:CDS | 30.0% |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1_3:24473375-24473394 | None:intergenic | 30.0% | |
| !! | TTGATTTACCTGAAAGCATT+TGG | - | chr1_3:24473420-24473439 | None:intergenic | 30.0% |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1_3:24473734-24473753 | Msa0111030:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1_3:24473735-24473754 | Msa0111030:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1_3:24473763-24473782 | Msa0111030:intron | 30.0% | |
| AATGCACATTTCATACCATT+AGG | + | chr1_3:24473851-24473870 | Msa0111030:intron | 30.0% | |
| GATACAAATACAACTATGCA+AGG | + | chr1_3:24474144-24474163 | Msa0111030:CDS | 30.0% | |
| ATTAATCTTCAGTGGTTCAA+AGG | + | chr1_3:24474273-24474292 | Msa0111030:three_prime_UTR | 30.0% | |
| GAAGATATTACTTCTTCCAG+AGG | - | chr1_3:24470967-24470986 | None:intergenic | 35.0% | |
| ! | CTTCATGCCCGTTATTATTT+TGG | + | chr1_3:24471033-24471052 | Msa0111030:CDS | 35.0% |
| GAACACTTTGTCCATAATCA+CGG | - | chr1_3:24471098-24471117 | None:intergenic | 35.0% | |
| ATAGACTTACAACGAATCCA+AGG | - | chr1_3:24471123-24471142 | None:intergenic | 35.0% | |
| GATGGAAACAAAAATGCTAG+TGG | - | chr1_3:24471169-24471188 | None:intergenic | 35.0% | |
| TTCCATCAGTTGTTTAACTG+TGG | + | chr1_3:24471182-24471201 | Msa0111030:intron | 35.0% | |
| AACCACAGTTAAACAACTGA+TGG | - | chr1_3:24471187-24471206 | None:intergenic | 35.0% | |
| ! | TAGACATGTGTTTGGTTTCA+TGG | - | chr1_3:24471355-24471374 | None:intergenic | 35.0% |
| AGCTAGATTAGACATGTGTT+TGG | - | chr1_3:24471363-24471382 | None:intergenic | 35.0% | |
| ! | AGAATGCCAAGATTAGTCAT+TGG | + | chr1_3:24471403-24471422 | Msa0111030:intron | 35.0% |
| GAAGTATGTGGCATAATTGA+AGG | - | chr1_3:24471539-24471558 | None:intergenic | 35.0% | |
| ATTATGCCACATACTTCATG+AGG | + | chr1_3:24471542-24471561 | Msa0111030:intron | 35.0% | |
| TCGATAATAGGGTTACATCT+AGG | - | chr1_3:24471775-24471794 | None:intergenic | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | + | chr1_3:24471927-24471946 | Msa0111030:CDS | 35.0% | |
| AATTGTGAAGGGATGAAGAA+TGG | - | chr1_3:24471995-24472014 | None:intergenic | 35.0% | |
| CATTAACTACAACAGTTAGC+TGG | - | chr1_3:24472225-24472244 | None:intergenic | 35.0% | |
| ! | TCATTTGGTGGAATAAGTAC+TGG | + | chr1_3:24472295-24472314 | Msa0111030:CDS | 35.0% |
| AAATGCAGACATTTCTGTGA+AGG | - | chr1_3:24472446-24472465 | None:intergenic | 35.0% | |
| ! | TCACAGAAATGTCTGCATTT+TGG | + | chr1_3:24472446-24472465 | Msa0111030:intron | 35.0% |
| !! | AAATGTCTGCATTTTGGTAC+AGG | + | chr1_3:24472452-24472471 | Msa0111030:intron | 35.0% |
| TTAAAAGGAGACAAGGATGA+AGG | - | chr1_3:24472807-24472826 | None:intergenic | 35.0% | |
| TGATGGTTATTATGAGACAG+AGG | + | chr1_3:24473063-24473082 | Msa0111030:intron | 35.0% | |
| GATGGTTATTATGAGACAGA+GGG | + | chr1_3:24473064-24473083 | Msa0111030:intron | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1_3:24473214-24473233 | None:intergenic | 35.0% | |
| GAGACAAATAACCAAGACAT+TGG | + | chr1_3:24473225-24473244 | Msa0111030:CDS | 35.0% | |
| AACCAAGACATTGGAAATAG+TGG | + | chr1_3:24473234-24473253 | Msa0111030:CDS | 35.0% | |
| AACCACTATTTCCAATGTCT+TGG | - | chr1_3:24473239-24473258 | None:intergenic | 35.0% | |
| AAGACATTGGAAATAGTGGT+TGG | + | chr1_3:24473238-24473257 | Msa0111030:CDS | 35.0% | |
| AGGTCTCTTATCCTCTTAAT+AGG | + | chr1_3:24473337-24473356 | Msa0111030:intron | 35.0% | |
| GGTCTCTTATCCTCTTAATA+GGG | + | chr1_3:24473338-24473357 | Msa0111030:intron | 35.0% | |
| AATAAGGAAGCCCTATTAAG+AGG | - | chr1_3:24473351-24473370 | None:intergenic | 35.0% | |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1_3:24473409-24473428 | Msa0111030:CDS | 35.0% |
| GATGATATTCCTTACAGCTA+TGG | + | chr1_3:24473673-24473692 | Msa0111030:CDS | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1_3:24473685-24473704 | None:intergenic | 35.0% | |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1_3:24474049-24474068 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1_3:24474114-24474133 | None:intergenic | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1_3:24474116-24474135 | Msa0111030:CDS | 35.0% | |
| ! | AGTTGATGCATGATTGACAA+TGG | + | chr1_3:24474179-24474198 | Msa0111030:exon | 35.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | + | chr1_3:24471084-24471103 | Msa0111030:CDS | 40.0% |
| ! | ATGGACAAAGTGTTCTACCT+TGG | + | chr1_3:24471103-24471122 | Msa0111030:CDS | 40.0% |
| AAAATGCTAGTGGCTCCAAT+CGG | - | chr1_3:24471159-24471178 | None:intergenic | 40.0% | |
| TTTAACTGTGGTTGCGATGA+CGG | + | chr1_3:24471194-24471213 | Msa0111030:intron | 40.0% | |
| TGAATTCTGCTGCACTATCA+AGG | - | chr1_3:24471232-24471251 | None:intergenic | 40.0% | |
| ! | CAAAGCATCCTAAACTCACA+CGG | - | chr1_3:24471513-24471532 | None:intergenic | 40.0% |
| ATTCATGGCATTCTAGATGG+TGG | + | chr1_3:24471930-24471949 | Msa0111030:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | + | chr1_3:24471931-24471950 | Msa0111030:CDS | 40.0% | |
| !! | TTCTAGATGGTGGGAATTCA+AGG | + | chr1_3:24471940-24471959 | Msa0111030:CDS | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | - | chr1_3:24472324-24472343 | None:intergenic | 40.0% |
| CAGACGAAGAAACGAAAAAG+AGG | + | chr1_3:24472322-24472341 | Msa0111030:CDS | 40.0% | |
| GGTCATCTCCTTACATTCAA+AGG | + | chr1_3:24472624-24472643 | Msa0111030:CDS | 40.0% | |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1_3:24472723-24472742 | Msa0111030:CDS | 40.0% |
| GTAAGAAGCCATAATTCCTG+AGG | - | chr1_3:24472742-24472761 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1_3:24472772-24472791 | Msa0111030:CDS | 40.0% | |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1_3:24473687-24473706 | Msa0111030:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1_3:24473699-24473718 | Msa0111030:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1_3:24473700-24473719 | Msa0111030:CDS | 40.0% |
| GCACATTTCATACCATTAGG+TGG | + | chr1_3:24473854-24473873 | Msa0111030:intron | 40.0% | |
| AACATCAATGCTCCACCTAA+TGG | - | chr1_3:24473869-24473888 | None:intergenic | 40.0% | |
| !! | ATTAGGTGGAGCATTGATGT+TGG | + | chr1_3:24473868-24473887 | Msa0111030:intron | 40.0% |
| !! | TTAGGTGGAGCATTGATGTT+GGG | + | chr1_3:24473869-24473888 | Msa0111030:intron | 40.0% |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1_3:24473884-24473903 | Msa0111030:CDS | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1_3:24473885-24473904 | Msa0111030:CDS | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1_3:24474050-24474069 | None:intergenic | 40.0% | |
| ! | TTTTGGTACAGGTGCTCCTT+TGG | + | chr1_3:24472463-24472482 | Msa0111030:intron | 45.0% |
| TGTTGACACAAGCAGTCCAA+AGG | - | chr1_3:24472482-24472501 | None:intergenic | 45.0% | |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1_3:24473399-24473418 | None:intergenic | 45.0% | |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1_3:24473405-24473424 | None:intergenic | 45.0% |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1_3:24473719-24473738 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1_3:24473891-24473910 | Msa0111030:CDS | 45.0% | |
| CTTCAGTGGTTCAAAGGCAA+AGG | + | chr1_3:24474279-24474298 | Msa0111030:three_prime_UTR | 45.0% | |
| ! | TGATAGGCAGAGTGTTCCTC+TGG | + | chr1_3:24470948-24470967 | Msa0111030:CDS | 50.0% |
| ACGGACACCGAACATGTTAC+TGG | + | chr1_3:24471599-24471618 | Msa0111030:intron | 50.0% | |
| ! | AGATAGCTCGTATTGGCGCA+GGG | + | chr1_3:24472144-24472163 | Msa0111030:CDS | 50.0% |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1_3:24473210-24473229 | None:intergenic | 50.0% | |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1_3:24473386-24473405 | Msa0111030:CDS | 50.0% |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1_3:24473705-24473724 | None:intergenic | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1_3:24473905-24473924 | Msa0111030:CDS | 50.0% | |
| TGCATCGGAGCAATCAGCTG+AGG | + | chr1_3:24470894-24470913 | Msa0111030:CDS | 55.0% | |
| GCATCGGAGCAATCAGCTGA+GGG | + | chr1_3:24470895-24470914 | Msa0111030:CDS | 55.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | + | chr1_3:24471502-24471521 | Msa0111030:intron | 55.0% | |
| GCAGGCGAGATAGCTCGTAT+TGG | + | chr1_3:24472137-24472156 | Msa0111030:intron | 55.0% | |
| ! | GAGATAGCTCGTATTGGCGC+AGG | + | chr1_3:24472143-24472162 | Msa0111030:CDS | 55.0% |
| !! | GGTGGAGCATTGATGTTGGG+TGG | + | chr1_3:24473872-24473891 | Msa0111030:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 24470889 | 24474342 | 24470889 | ID=Msa0111030;Name=Msa0111030 |
| chr1_3 | mRNA | 24470889 | 24474342 | 24470889 | ID=Msa0111030-mRNA-1;Parent=Msa0111030;Name=Msa0111030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.54|0.41|1|0.81|0.83|12|151|423 |
| chr1_3 | exon | 24470889 | 24471132 | 24470889 | ID=Msa0111030-mRNA-1:exon:8438;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24471455 | 24471513 | 24471455 | ID=Msa0111030-mRNA-1:exon:8439;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24471869 | 24472028 | 24471869 | ID=Msa0111030-mRNA-1:exon:8440;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24472141 | 24472165 | 24472141 | ID=Msa0111030-mRNA-1:exon:8441;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24472254 | 24472343 | 24472254 | ID=Msa0111030-mRNA-1:exon:8442;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24472474 | 24472645 | 24472474 | ID=Msa0111030-mRNA-1:exon:8443;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24472720 | 24472793 | 24472720 | ID=Msa0111030-mRNA-1:exon:8444;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24473203 | 24473272 | 24473203 | ID=Msa0111030-mRNA-1:exon:8445;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24473359 | 24473430 | 24473359 | ID=Msa0111030-mRNA-1:exon:8446;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24473646 | 24473779 | 24473646 | ID=Msa0111030-mRNA-1:exon:8447;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24473873 | 24473946 | 24473873 | ID=Msa0111030-mRNA-1:exon:8448;Parent=Msa0111030-mRNA-1 |
| chr1_3 | exon | 24474094 | 24474342 | 24474094 | ID=Msa0111030-mRNA-1:exon:8449;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24470889 | 24471132 | 24470889 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24471455 | 24471513 | 24471455 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24471869 | 24472028 | 24471869 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24472141 | 24472165 | 24472141 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24472254 | 24472343 | 24472254 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24472474 | 24472645 | 24472474 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24472720 | 24472793 | 24472720 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24473203 | 24473272 | 24473203 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24473359 | 24473430 | 24473359 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24473646 | 24473779 | 24473646 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24473873 | 24473946 | 24473873 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | CDS | 24474094 | 24474191 | 24474094 | ID=Msa0111030-mRNA-1:cds;Parent=Msa0111030-mRNA-1 |
| chr1_3 | three_prime_UTR | 24474192 | 24474342 | 24474192 | ID=Msa0111030-mRNA-1:three_prime_utr;Parent=Msa0111030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
