Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065580 | sp|Q5R533|SERC3_PONAB | 25.341 | 367 | 211 | 9 | 96 | 400 | 105 | 470 | 6.88e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065580 | A0A072VIB5 | 93.853 | 423 | 18 | 2 | 3 | 419 | 7 | 427 | 0.0 | 790 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017360 | Msa0065580 | 0.850851 | 1.299544e-60 | -8.615850e-47 |
| Msa0065580 | Msa0111030 | 0.870559 | 1.331772e-66 | -8.615850e-47 |
| Msa0065580 | Msa0154970 | 0.848276 | 6.796102e-60 | -8.615850e-47 |
| Msa0065580 | Msa0313900 | 0.806557 | 7.762399e-50 | -8.615850e-47 |
| Msa0065580 | Msa0567380 | 0.806722 | 7.164144e-50 | -8.615850e-47 |
| Msa0065580 | Msa0702720 | 0.812001 | 5.280930e-51 | -8.615850e-47 |
| Msa0065580 | Msa0703800 | 0.805312 | 1.418633e-49 | -8.615850e-47 |
| Msa0065580 | Msa1341840 | 0.808938 | 2.422250e-50 | -8.615850e-47 |
| Msa0065580 | Msa1407750 | 0.828315 | 9.625892e-55 | -8.615850e-47 |
| Msa0065580 | Msa1461370 | 0.822060 | 2.898484e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065580 | MtrunA17_Chr1g0169271 | 93.853 | 423 | 18 | 2 | 3 | 419 | 7 | 427 | 0.0 | 790 |
| Msa0065580 | MtrunA17_Chr8g0390691 | 48.947 | 380 | 185 | 4 | 24 | 396 | 11 | 388 | 3.68e-125 | 367 |
| Msa0065580 | MtrunA17_Chr6g0485111 | 48.138 | 376 | 183 | 6 | 39 | 404 | 28 | 401 | 4.15e-120 | 355 |
| Msa0065580 | MtrunA17_Chr2g0287641 | 29.319 | 382 | 239 | 6 | 47 | 400 | 28 | 406 | 1.02e-50 | 176 |
| Msa0065580 | MtrunA17_Chr7g0237091 | 28.571 | 385 | 237 | 11 | 47 | 400 | 31 | 408 | 2.30e-41 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065580 | AT2G33205.1 | 59.286 | 420 | 161 | 4 | 1 | 411 | 1 | 419 | 1.51e-177 | 502 |
| Msa0065580 | AT2G33205.8 | 59.005 | 422 | 161 | 5 | 1 | 411 | 1 | 421 | 9.84e-176 | 498 |
| Msa0065580 | AT2G33205.5 | 59.005 | 422 | 161 | 5 | 1 | 411 | 1 | 421 | 9.84e-176 | 498 |
| Msa0065580 | AT2G33205.9 | 60.050 | 398 | 147 | 5 | 1 | 387 | 1 | 397 | 7.10e-167 | 474 |
| Msa0065580 | AT2G33205.6 | 58.556 | 374 | 143 | 5 | 1 | 363 | 1 | 373 | 7.40e-150 | 430 |
| Msa0065580 | AT2G33205.2 | 63.950 | 319 | 111 | 3 | 96 | 411 | 9 | 326 | 1.30e-145 | 417 |
| Msa0065580 | AT2G33205.7 | 64.423 | 312 | 107 | 3 | 103 | 411 | 1 | 311 | 2.10e-142 | 409 |
| Msa0065580 | AT2G33205.3 | 55.821 | 335 | 138 | 4 | 1 | 326 | 1 | 334 | 3.05e-124 | 363 |
| Msa0065580 | AT2G33205.4 | 55.821 | 335 | 138 | 4 | 1 | 326 | 1 | 334 | 3.05e-124 | 363 |
| Msa0065580 | AT3G24460.2 | 46.277 | 376 | 191 | 3 | 35 | 400 | 28 | 402 | 5.30e-121 | 358 |
| Msa0065580 | AT3G24460.1 | 46.277 | 376 | 191 | 3 | 35 | 400 | 28 | 402 | 5.30e-121 | 358 |
| Msa0065580 | AT4G13345.1 | 48.056 | 360 | 180 | 2 | 47 | 400 | 33 | 391 | 1.20e-119 | 354 |
| Msa0065580 | AT4G13345.2 | 47.500 | 360 | 182 | 2 | 47 | 400 | 33 | 391 | 1.63e-118 | 351 |
| Msa0065580 | AT4G13345.6 | 47.500 | 360 | 182 | 2 | 47 | 400 | 33 | 391 | 1.63e-118 | 351 |
| Msa0065580 | AT4G13345.4 | 48.127 | 347 | 173 | 2 | 47 | 387 | 33 | 378 | 2.98e-113 | 338 |
| Msa0065580 | AT4G13345.5 | 46.440 | 323 | 166 | 2 | 47 | 363 | 33 | 354 | 7.63e-98 | 296 |
| Msa0065580 | AT4G13345.3 | 44.488 | 254 | 134 | 2 | 47 | 294 | 33 | 285 | 2.46e-64 | 209 |
| Msa0065580 | AT4G13345.7 | 44.488 | 254 | 134 | 2 | 47 | 294 | 33 | 285 | 2.46e-64 | 209 |
| Msa0065580 | AT3G06170.1 | 28.871 | 381 | 241 | 6 | 47 | 400 | 29 | 406 | 2.50e-46 | 164 |
| Msa0065580 | AT1G16180.2 | 26.823 | 384 | 247 | 8 | 47 | 400 | 31 | 410 | 1.05e-36 | 139 |
| Msa0065580 | AT1G16180.1 | 26.823 | 384 | 247 | 8 | 47 | 400 | 31 | 410 | 1.05e-36 | 139 |
Find 76 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACGCCCGTTATTATTT+TGG | 0.172149 | 1_2:+28088554 | Msa0065580:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.204290 | 1_2:+28090925 | Msa0065580:CDS |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1_2:-28090730 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1_2:-28090888 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1_2:+28090886 | Msa0065580:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1_2:-28089820 | None:intergenic |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1_2:+28089477 | Msa0065580:CDS |
| CTTGGTAACAGGTGCTCCTT+TGG | 0.300859 | 1_2:+28089980 | Msa0065580:intron |
| TTGATTTACCTGAAAGCATT+TGG | 0.328625 | 1_2:-28090933 | None:intergenic |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1_2:+28090120 | Msa0065580:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1_2:-28090723 | None:intergenic |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1_2:+28089828 | Msa0065580:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1_2:-28091627 | None:intergenic |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1_2:+28091251 | Msa0065580:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1_2:+28088972 | Msa0065580:intron |
| CAATTGCAAATATGGCAATA+AGG | 0.413383 | 1_2:-28090880 | None:intergenic |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1_2:-28090912 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1_2:+28088490 | Msa0065580:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1_2:+28091250 | Msa0065580:CDS |
| AACCACTATTTCCAATGTCT+TGG | 0.431009 | 1_2:-28090752 | None:intergenic |
| AACCAAGACATTGGAAATAG+TGG | 0.433497 | 1_2:+28090750 | Msa0065580:CDS |
| ATAGTATACCTTTGAATGTA+AGG | 0.434180 | 1_2:-28090149 | None:intergenic |
| TGATAGGCAGAGGGGTCCTC+TGG | 0.434826 | 1_2:+28088469 | Msa0065580:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1_2:+28089397 | Msa0065580:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.454260 | 1_2:-28088561 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1_2:+28088981 | Msa0065580:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1_2:+28091189 | Msa0065580:CDS |
| TTTATATTGGTGCTATATGT+GGG | 0.469364 | 1_2:+28090023 | Msa0065580:CDS |
| ATATTGTTCATGTTAGTGAT+AGG | 0.469895 | 1_2:+28088453 | Msa0065580:CDS |
| GAAATAGCTCGTATTGGTGC+AGG | 0.472544 | 1_2:+28089679 | Msa0065580:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1_2:-28088562 | None:intergenic |
| GCAGGTGAAATAGCTCGTAT+TGG | 0.478741 | 1_2:+28089673 | Msa0065580:intron |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1_2:+28091632 | Msa0065580:CDS |
| GGTCATATCCTTACATTCAA+AGG | 0.491318 | 1_2:+28090141 | Msa0065580:CDS |
| ATAGAACTTACAACGAATCC+AGG | 0.494801 | 1_2:-28088642 | None:intergenic |
| ATTAATCTTCAGTGGTTCAA+AGG | 0.498219 | 1_2:+28091789 | Msa0065580:three_prime_UTR |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1_2:+28089385 | Msa0065580:CDS |
| TTCATGTTAGTGATAGGCAG+AGG | 0.526988 | 1_2:+28088459 | Msa0065580:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1_2:-28089474 | None:intergenic |
| TTAGGTGGAGCATTGATGTT+GGG | 0.537476 | 1_2:+28091385 | Msa0065580:intron |
| TATGTTGGTGTGCAATCAGA+AGG | 0.545171 | 1_2:+28090289 | Msa0065580:CDS |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1_2:-28089462 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1_2:-28091232 | None:intergenic |
| AAATAGTAATTAATCTTCAG+TGG | 0.561162 | 1_2:+28091781 | Msa0065580:three_prime_UTR |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1_2:+28089401 | Msa0065580:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1_2:-28089473 | None:intergenic |
| AAGACATTGGAAATAGTGGT+TGG | 0.573163 | 1_2:+28090754 | Msa0065580:CDS |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1_2:+28089400 | Msa0065580:CDS |
| GAGACAAATAACCAAGACAT+TGG | 0.577748 | 1_2:+28090741 | Msa0065580:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1_2:-28090727 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.585126 | 1_2:+28090225 | Msa0065580:intron |
| CTTCAGTGGTTCAAAGGCAA+AGG | 0.585598 | 1_2:+28091795 | Msa0065580:three_prime_UTR |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1_2:+28091400 | Msa0065580:CDS |
| GATACAAATACAACTATGCA+AGG | 0.590595 | 1_2:+28091660 | Msa0065580:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1_2:+28088588 | Msa0065580:CDS |
| TCATGTTAGTGATAGGCAGA+GGG | 0.592097 | 1_2:+28088460 | Msa0065580:CDS |
| ATTAGGTGGAGCATTGATGT+TGG | 0.592264 | 1_2:+28091384 | Msa0065580:intron |
| ATGGACAAAGTGTTCTACCC+TGG | 0.592870 | 1_2:+28088624 | Msa0065580:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1_2:+28091421 | Msa0065580:CDS |
| GGTGGAGCATTGATGTTGGG+TGG | 0.602838 | 1_2:+28091388 | Msa0065580:intron |
| GAACACTTTGTCCATAATCA+CGG | 0.614777 | 1_2:-28088616 | None:intergenic |
| TTGAAGAATGAGTGCATCTG+AGG | 0.616765 | 1_2:+28088415 | None:intergenic |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1_2:-28088485 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1_2:+28091407 | Msa0065580:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1_2:+28089372 | Msa0065580:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1_2:-28090918 | None:intergenic |
| TAGAACTTACAACGAATCCA+GGG | 0.632769 | 1_2:-28088641 | None:intergenic |
| AAATAGCTCGTATTGGTGCA+GGG | 0.645847 | 1_2:+28089680 | Msa0065580:CDS |
| AGTTGATGCATGATTGACAA+TGG | 0.653924 | 1_2:+28091695 | Msa0065580:exon |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1_2:+28088416 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1_2:-28091218 | None:intergenic |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1_2:-28089996 | None:intergenic |
| GTAAGAAGCCATAATTCCTG+AGG | 0.670534 | 1_2:-28090256 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1_2:-28090116 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1_2:+28091401 | Msa0065580:CDS |
| CATGTTAGTGATAGGCAGAG+GGG | 0.724209 | 1_2:+28088461 | Msa0065580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGAAAAAAATATATTTA+TGG | + | chr1_2:28089562-28089581 | Msa0065580:intron | 10.0% |
| !! | AATAATTAAGAAAAAATACA+AGG | - | chr1_2:28090213-28090232 | None:intergenic | 10.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | - | chr1_2:28088565-28088584 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTAATTATTGC+AGG | + | chr1_2:28090215-28090234 | Msa0065580:intron | 15.0% |
| !! | TGTAAATTGTATTAATTAGA+AGG | + | chr1_2:28090476-28090495 | Msa0065580:intron | 15.0% |
| !!! | AGCTTTTATTTACTTTAAAT+GGG | - | chr1_2:28090982-28091001 | None:intergenic | 15.0% |
| !!! | TAGCTTTTATTTACTTTAAA+TGG | - | chr1_2:28090983-28091002 | None:intergenic | 15.0% |
| !!! | TTCATTTTCAACTTTATTTT+TGG | - | chr1_2:28091169-28091188 | None:intergenic | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1_2:28091592-28091611 | Msa0065580:intron | 15.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | - | chr1_2:28088564-28088583 | None:intergenic | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | - | chr1_2:28089165-28089184 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1_2:28089434-28089453 | Msa0065580:CDS | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | - | chr1_2:28089476-28089495 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | - | chr1_2:28089477-28089496 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | + | chr1_2:28089477-28089496 | Msa0065580:CDS | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | + | chr1_2:28089481-28089500 | Msa0065580:intron | 20.0% |
| !!! | ATTTAAGTTGATGATTACAT+AGG | + | chr1_2:28089765-28089784 | Msa0065580:intron | 20.0% |
| !!! | ATATTAACATGTTATTGACT+TGG | + | chr1_2:28089962-28089981 | Msa0065580:intron | 20.0% |
| !!! | TTAATATATTTTTCATCGCA+TGG | + | chr1_2:28090092-28090111 | Msa0065580:CDS | 20.0% |
| !!! | TTTTTTTAATCTGTGTGAAA+TGG | - | chr1_2:28090395-28090414 | None:intergenic | 20.0% |
| !!! | AATATTTTTTACGAATGTGA+TGG | + | chr1_2:28090562-28090581 | Msa0065580:intron | 20.0% |
| !! | TTACAAATATTAACATGAGA+AGG | - | chr1_2:28090635-28090654 | None:intergenic | 20.0% |
| !! | TGTATACATTCTAATTCATA+TGG | - | chr1_2:28090817-28090836 | None:intergenic | 20.0% |
| !! | TACATAATCTCATACTATAA+AGG | + | chr1_2:28090833-28090852 | Msa0065580:intron | 20.0% |
| !! | ACTAATTATTTCAACATGTA+CGG | - | chr1_2:28091126-28091145 | None:intergenic | 20.0% |
| !!! | TATTTTTGGAAAACTGTTAA+AGG | - | chr1_2:28091155-28091174 | None:intergenic | 20.0% |
| !! | AAAAATCATCACATCTTAAA+AGG | - | chr1_2:28091326-28091345 | None:intergenic | 20.0% |
| !! | TGCATTATTAAGATACTATA+AGG | - | chr1_2:28091353-28091372 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1_2:28091510-28091529 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1_2:28091511-28091530 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1_2:28091570-28091589 | None:intergenic | 20.0% |
| !! | AAATAGTAATTAATCTTCAG+TGG | + | chr1_2:28091781-28091800 | Msa0065580:three_prime_UTR | 20.0% |
| ! | ATATTGTTCATGTTAGTGAT+AGG | + | chr1_2:28088453-28088472 | Msa0065580:CDS | 25.0% |
| !! | AAAATGCTAGTGTCTAAAAT+TGG | - | chr1_2:28088681-28088700 | None:intergenic | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | - | chr1_2:28088964-28088983 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1_2:28088972-28088991 | Msa0065580:intron | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | + | chr1_2:28089004-28089023 | Msa0065580:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | + | chr1_2:28089005-28089024 | Msa0065580:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | + | chr1_2:28089006-28089025 | Msa0065580:CDS | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | + | chr1_2:28089161-28089180 | Msa0065580:intron | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | - | chr1_2:28089257-28089276 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | - | chr1_2:28089324-28089343 | None:intergenic | 25.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1_2:28089372-28089391 | Msa0065580:CDS | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | - | chr1_2:28089522-28089541 | None:intergenic | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1_2:28089823-28089842 | None:intergenic | 25.0% |
| !! | TTTCTATGAATGCTTTTGAA+GGG | - | chr1_2:28089927-28089946 | None:intergenic | 25.0% |
| !! | ATTTCTATGAATGCTTTTGA+AGG | - | chr1_2:28089928-28089947 | None:intergenic | 25.0% |
| !!! | GTGTCAACATTGTTTTATAT+TGG | + | chr1_2:28090010-28090029 | Msa0065580:CDS | 25.0% |
| !!! | TTTTATATTGGTGCTATATG+TGG | + | chr1_2:28090022-28090041 | Msa0065580:CDS | 25.0% |
| !!! | TTTATATTGGTGCTATATGT+GGG | + | chr1_2:28090023-28090042 | Msa0065580:CDS | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | - | chr1_2:28090152-28090171 | None:intergenic | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | + | chr1_2:28090274-28090293 | Msa0065580:CDS | 25.0% |
| ! | GTTGACTACAATTGATTAAA+AGG | - | chr1_2:28090339-28090358 | None:intergenic | 25.0% |
| ! | GATAATTGAAAGAAAGAAGA+TGG | + | chr1_2:28090422-28090441 | Msa0065580:intron | 25.0% |
| !! | TCAAAAGTGACAATCTTTTT+AGG | + | chr1_2:28090536-28090555 | Msa0065580:intron | 25.0% |
| ! | TTTGAGAGATTAACTTTAGA+TGG | - | chr1_2:28091037-28091056 | None:intergenic | 25.0% |
| ! | CTAATTATTTCAACATGTAC+GGG | - | chr1_2:28091125-28091144 | None:intergenic | 25.0% |
| ! | AAGGAATGATGTGATAAATT+AGG | - | chr1_2:28091307-28091326 | None:intergenic | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1_2:28091509-28091528 | None:intergenic | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1_2:28091569-28091588 | None:intergenic | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1_2:28091571-28091590 | None:intergenic | 25.0% |
| ! | AGTAGCAAAAAATTAAAAGG+AGG | - | chr1_2:28091739-28091758 | None:intergenic | 25.0% |
| ! | ACGAGTAGCAAAAAATTAAA+AGG | - | chr1_2:28091742-28091761 | None:intergenic | 25.0% |
| GGAAGAAGTAATATCTTCAT+TGG | + | chr1_2:28088490-28088509 | Msa0065580:CDS | 30.0% | |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1_2:28088588-28088607 | Msa0065580:CDS | 30.0% |
| CTATTACAGTTGTTTAACTG+TGG | + | chr1_2:28088706-28088725 | Msa0065580:intron | 30.0% | |
| !!! | AGTTTTAAAGATCACATCGA+AGG | - | chr1_2:28088810-28088829 | None:intergenic | 30.0% |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1_2:28088981-28089000 | Msa0065580:CDS | 30.0% | |
| ! | TGATTGTTTTCATTCATTGG+GGG | + | chr1_2:28089007-28089026 | Msa0065580:CDS | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | + | chr1_2:28089104-28089123 | Msa0065580:intron | 30.0% |
| ATGTATACCAGTAACATGTT+TGG | - | chr1_2:28089133-28089152 | None:intergenic | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | + | chr1_2:28089385-28089404 | Msa0065580:CDS | 30.0% | |
| !!! | GGTCAATTTTGTTTTGAGAA+AGG | + | chr1_2:28089614-28089633 | Msa0065580:intron | 30.0% |
| GAAAGGTTCTTACATAGAAA+TGG | + | chr1_2:28089631-28089650 | Msa0065580:intron | 30.0% | |
| !! | TCTAACTTCTATGTTTTTGC+AGG | + | chr1_2:28089655-28089674 | Msa0065580:intron | 30.0% |
| ! | CTTTCATTCACTTCAAGTTA+TGG | + | chr1_2:28089722-28089741 | Msa0065580:intron | 30.0% |
| CATCAACTTAAATAGTTAGC+TGG | - | chr1_2:28089758-28089777 | None:intergenic | 30.0% | |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1_2:28089813-28089832 | Msa0065580:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1_2:28089816-28089835 | Msa0065580:CDS | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | + | chr1_2:28089828-28089847 | Msa0065580:CDS | 30.0% |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1_2:28090119-28090138 | None:intergenic | 30.0% | |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1_2:28090120-28090139 | Msa0065580:CDS | 30.0% |
| TACATTGACATGAAAAATCC+TGG | + | chr1_2:28090178-28090197 | Msa0065580:intron | 30.0% | |
| AATACAAGGAATGAAAAACC+AGG | - | chr1_2:28090199-28090218 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1_2:28090225-28090244 | Msa0065580:intron | 30.0% | |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1_2:28090248-28090267 | Msa0065580:CDS | 30.0% |
| CAATTGATTAAAAGGAGACA+AGG | - | chr1_2:28090331-28090350 | None:intergenic | 30.0% | |
| ! | AAAGAATAATAACTTGCGAG+TGG | + | chr1_2:28090453-28090472 | Msa0065580:intron | 30.0% |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1_2:28090733-28090752 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1_2:28090883-28090902 | None:intergenic | 30.0% | |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1_2:28090886-28090905 | Msa0065580:CDS | 30.0% |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1_2:28090891-28090910 | None:intergenic | 30.0% | |
| !! | TTGATTTACCTGAAAGCATT+TGG | - | chr1_2:28090936-28090955 | None:intergenic | 30.0% |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1_2:28091250-28091269 | Msa0065580:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1_2:28091251-28091270 | Msa0065580:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1_2:28091279-28091298 | Msa0065580:intron | 30.0% | |
| AATGCACATTTCATACCATT+AGG | + | chr1_2:28091367-28091386 | Msa0065580:intron | 30.0% | |
| GATACAAATACAACTATGCA+AGG | + | chr1_2:28091660-28091679 | Msa0065580:CDS | 30.0% | |
| ATTAATCTTCAGTGGTTCAA+AGG | + | chr1_2:28091789-28091808 | Msa0065580:three_prime_UTR | 30.0% | |
| GAAGATATTACTTCTTCCAG+AGG | - | chr1_2:28088488-28088507 | None:intergenic | 35.0% | |
| GAACACTTTGTCCATAATCA+CGG | - | chr1_2:28088619-28088638 | None:intergenic | 35.0% | |
| TAGAACTTACAACGAATCCA+GGG | - | chr1_2:28088644-28088663 | None:intergenic | 35.0% | |
| ATAGAACTTACAACGAATCC+AGG | - | chr1_2:28088645-28088664 | None:intergenic | 35.0% | |
| ! | TAGATGTGTGTTTGGTTTCT+CGG | - | chr1_2:28088879-28088898 | None:intergenic | 35.0% |
| AGCTAGATTAGATGTGTGTT+TGG | - | chr1_2:28088887-28088906 | None:intergenic | 35.0% | |
| ! | AGAATGCTACGATTAGTCAT+TGG | + | chr1_2:28088927-28088946 | Msa0065580:intron | 35.0% |
| ATAATTTCTCGTGAAGCATG+TGG | - | chr1_2:28089075-28089094 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | + | chr1_2:28089143-28089162 | Msa0065580:intron | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | + | chr1_2:28089358-28089377 | Msa0065580:CDS | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | + | chr1_2:28089397-28089416 | Msa0065580:CDS | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | - | chr1_2:28089465-28089484 | None:intergenic | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | + | chr1_2:28089576-28089595 | Msa0065580:intron | 35.0% | |
| ATTAGGATCTTGGTTATAGC+TGG | + | chr1_2:28089593-28089612 | Msa0065580:intron | 35.0% | |
| !! | CTTTTGAAGGGATAGCAAAA+TGG | - | chr1_2:28089915-28089934 | None:intergenic | 35.0% |
| !! | CATGTTATTGACTTGGTAAC+AGG | + | chr1_2:28089969-28089988 | Msa0065580:intron | 35.0% |
| GGTCATATCCTTACATTCAA+AGG | + | chr1_2:28090141-28090160 | Msa0065580:CDS | 35.0% | |
| TTAAAAGGAGACAAGGATGA+AGG | - | chr1_2:28090324-28090343 | None:intergenic | 35.0% | |
| TGATGGTTATTATGAGACAG+AGG | + | chr1_2:28090579-28090598 | Msa0065580:intron | 35.0% | |
| GATGGTTATTATGAGACAGA+GGG | + | chr1_2:28090580-28090599 | Msa0065580:intron | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1_2:28090730-28090749 | None:intergenic | 35.0% | |
| GAGACAAATAACCAAGACAT+TGG | + | chr1_2:28090741-28090760 | Msa0065580:CDS | 35.0% | |
| AACCAAGACATTGGAAATAG+TGG | + | chr1_2:28090750-28090769 | Msa0065580:CDS | 35.0% | |
| AACCACTATTTCCAATGTCT+TGG | - | chr1_2:28090755-28090774 | None:intergenic | 35.0% | |
| AAGACATTGGAAATAGTGGT+TGG | + | chr1_2:28090754-28090773 | Msa0065580:CDS | 35.0% | |
| AGGTCTCTTATCCTCTTAAT+AGG | + | chr1_2:28090853-28090872 | Msa0065580:intron | 35.0% | |
| GGTCTCTTATCCTCTTAATA+GGG | + | chr1_2:28090854-28090873 | Msa0065580:intron | 35.0% | |
| AATAAGGAAGCCCTATTAAG+AGG | - | chr1_2:28090867-28090886 | None:intergenic | 35.0% | |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1_2:28090925-28090944 | Msa0065580:CDS | 35.0% |
| GATGATATTCCTTACAGCTA+TGG | + | chr1_2:28091189-28091208 | Msa0065580:CDS | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1_2:28091201-28091220 | None:intergenic | 35.0% | |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1_2:28091565-28091584 | None:intergenic | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1_2:28091630-28091649 | None:intergenic | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1_2:28091632-28091651 | Msa0065580:CDS | 35.0% | |
| ! | AGTTGATGCATGATTGACAA+TGG | + | chr1_2:28091695-28091714 | Msa0065580:exon | 35.0% |
| TTCATGTTAGTGATAGGCAG+AGG | + | chr1_2:28088459-28088478 | Msa0065580:CDS | 40.0% | |
| TCATGTTAGTGATAGGCAGA+GGG | + | chr1_2:28088460-28088479 | Msa0065580:CDS | 40.0% | |
| ! | CTTCACGCCCGTTATTATTT+TGG | + | chr1_2:28088554-28088573 | Msa0065580:CDS | 40.0% |
| ! | GCATGGTTTTTCCGTGATTA+TGG | + | chr1_2:28088605-28088624 | Msa0065580:CDS | 40.0% |
| TTTAACTGTGGTTGCGATTG+CGG | + | chr1_2:28088718-28088737 | Msa0065580:intron | 40.0% | |
| CAGCAGAATTCAGACAATTG+CGG | + | chr1_2:28088764-28088783 | Msa0065580:intron | 40.0% | |
| AGGCATCACAACAGAAATTG+CGG | - | chr1_2:28088790-28088809 | None:intergenic | 40.0% | |
| ! | CAAAGCATCCTAAACTCACA+CGG | - | chr1_2:28089037-28089056 | None:intergenic | 40.0% |
| ATTCATGGCATTCTAGATGG+TGG | + | chr1_2:28089400-28089419 | Msa0065580:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | + | chr1_2:28089401-28089420 | Msa0065580:CDS | 40.0% | |
| ! | ATCTGACTTTTCTCGCTACA+TGG | - | chr1_2:28089542-28089561 | None:intergenic | 40.0% |
| ! | AAATAGCTCGTATTGGTGCA+GGG | + | chr1_2:28089680-28089699 | Msa0065580:CDS | 40.0% |
| !! | CTCTTTTTCGTTTCTTCGTC+TGG | - | chr1_2:28089857-28089876 | None:intergenic | 40.0% |
| CAGACGAAGAAACGAAAAAG+AGG | + | chr1_2:28089855-28089874 | Msa0065580:CDS | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | - | chr1_2:28089999-28090018 | None:intergenic | 40.0% | |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1_2:28090240-28090259 | Msa0065580:CDS | 40.0% |
| GTAAGAAGCCATAATTCCTG+AGG | - | chr1_2:28090259-28090278 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1_2:28090289-28090308 | Msa0065580:CDS | 40.0% | |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1_2:28091203-28091222 | Msa0065580:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1_2:28091215-28091234 | Msa0065580:CDS | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1_2:28091216-28091235 | Msa0065580:CDS | 40.0% |
| GCACATTTCATACCATTAGG+TGG | + | chr1_2:28091370-28091389 | Msa0065580:intron | 40.0% | |
| AACATCAATGCTCCACCTAA+TGG | - | chr1_2:28091385-28091404 | None:intergenic | 40.0% | |
| !! | ATTAGGTGGAGCATTGATGT+TGG | + | chr1_2:28091384-28091403 | Msa0065580:intron | 40.0% |
| !! | TTAGGTGGAGCATTGATGTT+GGG | + | chr1_2:28091385-28091404 | Msa0065580:intron | 40.0% |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1_2:28091400-28091419 | Msa0065580:CDS | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1_2:28091401-28091420 | Msa0065580:CDS | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1_2:28091566-28091585 | None:intergenic | 40.0% | |
| CATGTTAGTGATAGGCAGAG+GGG | + | chr1_2:28088461-28088480 | Msa0065580:CDS | 45.0% | |
| ! | ATGGACAAAGTGTTCTACCC+TGG | + | chr1_2:28088624-28088643 | Msa0065580:CDS | 45.0% |
| GAAGCATGTGGCATAATCGA+AGG | - | chr1_2:28089063-28089082 | None:intergenic | 45.0% | |
| ACGGACACCAAACATGTTAC+TGG | + | chr1_2:28089123-28089142 | Msa0065580:intron | 45.0% | |
| GCAGGTGAAATAGCTCGTAT+TGG | + | chr1_2:28089673-28089692 | Msa0065580:intron | 45.0% | |
| ! | GAAATAGCTCGTATTGGTGC+AGG | + | chr1_2:28089679-28089698 | Msa0065580:CDS | 45.0% |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1_2:28090915-28090934 | None:intergenic | 45.0% | |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1_2:28090921-28090940 | None:intergenic | 45.0% |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1_2:28091235-28091254 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1_2:28091407-28091426 | Msa0065580:CDS | 45.0% | |
| CTTCAGTGGTTCAAAGGCAA+AGG | + | chr1_2:28091795-28091814 | Msa0065580:three_prime_UTR | 45.0% | |
| GGCACAGTGCATTAGGATCT+TGG | + | chr1_2:28089583-28089602 | Msa0065580:intron | 50.0% | |
| ! | CTTGGTAACAGGTGCTCCTT+TGG | + | chr1_2:28089980-28089999 | Msa0065580:intron | 50.0% |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1_2:28090726-28090745 | None:intergenic | 50.0% | |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1_2:28090902-28090921 | Msa0065580:CDS | 50.0% |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1_2:28091221-28091240 | None:intergenic | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1_2:28091421-28091440 | Msa0065580:CDS | 50.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | + | chr1_2:28089026-28089045 | Msa0065580:intron | 55.0% | |
| !! | GGTGGAGCATTGATGTTGGG+TGG | + | chr1_2:28091388-28091407 | Msa0065580:intron | 55.0% |
| TGATAGGCAGAGGGGTCCTC+TGG | + | chr1_2:28088469-28088488 | Msa0065580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 28088421 | 28091858 | 28088421 | ID=Msa0065580;Name=Msa0065580 |
| chr1_2 | mRNA | 28088421 | 28091858 | 28088421 | ID=Msa0065580-mRNA-1;Parent=Msa0065580;Name=Msa0065580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1|0.54|0.41|1|0.72|0.83|12|151|419 |
| chr1_2 | exon | 28088421 | 28088653 | 28088421 | ID=Msa0065580-mRNA-1:exon:9671;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28088979 | 28089037 | 28088979 | ID=Msa0065580-mRNA-1:exon:9672;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28089339 | 28089498 | 28089339 | ID=Msa0065580-mRNA-1:exon:9673;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28089677 | 28089701 | 28089677 | ID=Msa0065580-mRNA-1:exon:9674;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28089787 | 28089876 | 28089787 | ID=Msa0065580-mRNA-1:exon:9675;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28089991 | 28090162 | 28089991 | ID=Msa0065580-mRNA-1:exon:9676;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28090237 | 28090310 | 28090237 | ID=Msa0065580-mRNA-1:exon:9677;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28090719 | 28090788 | 28090719 | ID=Msa0065580-mRNA-1:exon:9678;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28090875 | 28090946 | 28090875 | ID=Msa0065580-mRNA-1:exon:9679;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28091162 | 28091295 | 28091162 | ID=Msa0065580-mRNA-1:exon:9680;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28091389 | 28091462 | 28091389 | ID=Msa0065580-mRNA-1:exon:9681;Parent=Msa0065580-mRNA-1 |
| chr1_2 | exon | 28091610 | 28091858 | 28091610 | ID=Msa0065580-mRNA-1:exon:9682;Parent=Msa0065580-mRNA-1 |
| chr1_2 | five_prime_UTR | 28088421 | 28088421 | 28088421 | ID=Msa0065580-mRNA-1:five_prime_utr;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28088422 | 28088653 | 28088422 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28088979 | 28089037 | 28088979 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28089339 | 28089498 | 28089339 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28089677 | 28089701 | 28089677 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28089787 | 28089876 | 28089787 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28089991 | 28090162 | 28089991 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28090237 | 28090310 | 28090237 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28090719 | 28090788 | 28090719 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28090875 | 28090946 | 28090875 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28091162 | 28091295 | 28091162 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28091389 | 28091462 | 28091389 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | CDS | 28091610 | 28091707 | 28091610 | ID=Msa0065580-mRNA-1:cds;Parent=Msa0065580-mRNA-1 |
| chr1_2 | three_prime_UTR | 28091708 | 28091858 | 28091708 | ID=Msa0065580-mRNA-1:three_prime_utr;Parent=Msa0065580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
