Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017520 | sp|B9DHD7|VAP22_ARATH | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.57e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017520 | Msa0079080 | 0.861772 | 8.110612e-64 | -8.615850e-47 |
| Msa0017520 | Msa0127660 | 0.865252 | 6.757430e-65 | -8.615850e-47 |
| Msa0017520 | Msa1305800 | 0.986832 | 3.992245e-168 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017520 | MtrunA17_Chr1g0191261 | 97.078 | 308 | 9 | 0 | 5 | 312 | 69 | 376 | 0.0 | 581 |
| Msa0017520 | MtrunA17_Chr4g0066671 | 62.162 | 74 | 28 | 0 | 5 | 78 | 68 | 141 | 5.18e-23 | 97.4 |
| Msa0017520 | MtrunA17_Chr7g0230901 | 44.776 | 67 | 37 | 0 | 5 | 71 | 69 | 135 | 8.97e-13 | 67.0 |
| Msa0017520 | MtrunA17_Chr4g0012521 | 31.544 | 149 | 87 | 4 | 5 | 143 | 69 | 212 | 3.23e-12 | 65.5 |
| Msa0017520 | MtrunA17_Chr5g0399741 | 48.485 | 66 | 33 | 1 | 4 | 69 | 68 | 132 | 1.95e-11 | 62.8 |
| Msa0017520 | MtrunA17_Chr4g0012141 | 46.774 | 62 | 33 | 0 | 4 | 65 | 80 | 141 | 2.04e-11 | 62.4 |
| Msa0017520 | MtrunA17_Chr5g0399141 | 35.789 | 95 | 58 | 1 | 5 | 96 | 71 | 165 | 3.81e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017520 | AT1G08820.1 | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.61e-24 | 102 |
| Msa0017520 | AT1G08820.5 | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.61e-24 | 102 |
| Msa0017520 | AT1G08820.3 | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.61e-24 | 102 |
| Msa0017520 | AT1G08820.4 | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.61e-24 | 102 |
| Msa0017520 | AT1G08820.2 | 30.195 | 308 | 162 | 9 | 5 | 310 | 68 | 324 | 2.61e-24 | 102 |
| Msa0017520 | AT3G60600.1 | 42.105 | 76 | 42 | 1 | 5 | 80 | 85 | 158 | 7.90e-13 | 68.2 |
| Msa0017520 | AT2G45140.2 | 44.737 | 76 | 40 | 1 | 5 | 80 | 68 | 141 | 8.09e-13 | 67.4 |
| Msa0017520 | AT2G45140.1 | 44.737 | 76 | 40 | 1 | 5 | 80 | 68 | 141 | 1.26e-12 | 67.0 |
| Msa0017520 | AT3G60600.2 | 42.105 | 76 | 42 | 1 | 5 | 80 | 85 | 158 | 1.31e-12 | 66.6 |
| Msa0017520 | AT3G60600.3 | 42.105 | 76 | 42 | 1 | 5 | 80 | 85 | 158 | 1.37e-12 | 67.0 |
| Msa0017520 | AT4G00170.2 | 44.000 | 75 | 41 | 1 | 5 | 79 | 43 | 116 | 5.21e-11 | 62.0 |
| Msa0017520 | AT4G00170.1 | 43.421 | 76 | 42 | 1 | 5 | 80 | 70 | 144 | 7.39e-11 | 62.0 |
Find 141 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCCTAACCTTATTAAAA+TGG | 0.144741 | 1_1:-29212250 | Msa0017520:three_prime_UTR |
| CCAGAACTAGTTCCTGTTAA+TGG | 0.166308 | 1_1:-29214180 | Msa0017520:CDS |
| CTGCCACCTTGTCAAGATTT+TGG | 0.169575 | 1_1:-29212985 | Msa0017520:three_prime_UTR |
| GGCACTTATCTGTGTCTTCT+TGG | 0.212884 | 1_1:-29211700 | Msa0017520:three_prime_UTR |
| CGATACTTTGTATATAATAT+TGG | 0.236274 | 1_1:-29212295 | Msa0017520:three_prime_UTR |
| CCGTTTACACTCTTGATATC+TGG | 0.242302 | 1_1:-29211673 | Msa0017520:three_prime_UTR |
| GCTTGCTGTAAATAACTATT+AGG | 0.249918 | 1_1:-29212881 | Msa0017520:three_prime_UTR |
| ATACAAACGCAACGTGATTA+TGG | 0.266988 | 1_1:+29211499 | None:intergenic |
| GCAAGATAGTGAAATATAAT+TGG | 0.268359 | 1_1:+29212764 | None:intergenic |
| TCCTTGCACACCAAATCTTC+AGG | 0.271440 | 1_1:+29214446 | None:intergenic |
| TGCCTCAAGTTTGTTATATT+AGG | 0.272978 | 1_1:-29211613 | Msa0017520:three_prime_UTR |
| TTCAACCCTGCTTCTTCTCT+TGG | 0.273735 | 1_1:+29213568 | None:intergenic |
| TTCTTTGAGTCTCCATTAAC+AGG | 0.295800 | 1_1:+29214168 | None:intergenic |
| GTTGAAGGTAGAATATGATA+TGG | 0.309168 | 1_1:-29213620 | Msa0017520:CDS |
| TGCAGAGATTGAAGAGGATA+TGG | 0.310428 | 1_1:-29213644 | Msa0017520:CDS |
| TATGGGGTTGGATGCTATTA+AGG | 0.319281 | 1_1:-29213602 | Msa0017520:CDS |
| GTTTGTTATATTAGGAGTTT+AGG | 0.320753 | 1_1:-29211605 | Msa0017520:three_prime_UTR |
| TCAAAATGTTAGTATCTTCC+TGG | 0.337913 | 1_1:+29211638 | None:intergenic |
| TTTCGTCTAACCATGGGTTC+AGG | 0.347161 | 1_1:+29214087 | None:intergenic |
| CCTCCTCTCCTCTGTTAACT+TGG | 0.348926 | 1_1:+29212122 | None:intergenic |
| TTTCCTAACCTTATTAAAAT+GGG | 0.349263 | 1_1:-29212249 | Msa0017520:three_prime_UTR |
| CCATTAACAGGAACTAGTTC+TGG | 0.359456 | 1_1:+29214180 | None:intergenic |
| ACGGGTAGCCCCTGAAGATT+TGG | 0.371733 | 1_1:-29214456 | Msa0017520:CDS |
| AGGGGAAAGTGGTGTGTATA+AGG | 0.371875 | 1_1:+29212609 | None:intergenic |
| GCACTTATCTGTGTCTTCTT+GGG | 0.372916 | 1_1:-29211699 | Msa0017520:three_prime_UTR |
| TTGAGATTTGAGATGTTAGT+TGG | 0.374216 | 1_1:-29212914 | Msa0017520:three_prime_UTR |
| TGAAGAGGATATGGAGTTGA+AGG | 0.374389 | 1_1:-29213635 | Msa0017520:CDS |
| CACATAGGATTGAGCCTGTA+TGG | 0.375175 | 1_1:+29212329 | None:intergenic |
| GATGAAGGTGTCAAAAGATC+TGG | 0.376784 | 1_1:-29213401 | Msa0017520:CDS |
| CAAATGCCATAGTTCCAAAA+AGG | 0.385651 | 1_1:+29211182 | None:intergenic |
| TGATGAGATTAGTGGAAAAC+TGG | 0.389046 | 1_1:-29211412 | Msa0017520:three_prime_UTR |
| ATTGAGCCTGTATGGATGTT+AGG | 0.390986 | 1_1:+29212337 | None:intergenic |
| GGAACTAGTTCTGGTGAATC+AGG | 0.392780 | 1_1:+29214189 | None:intergenic |
| TAACCATGGGTTCAGGGGAC+TGG | 0.399998 | 1_1:+29214094 | None:intergenic |
| TTGAAGGTAGAATATGATAT+GGG | 0.407459 | 1_1:-29213619 | Msa0017520:CDS |
| CGTTTACACTCTTGATATCT+GGG | 0.413556 | 1_1:-29211672 | Msa0017520:three_prime_UTR |
| CTGCATCAACCAATGTGCTT+TGG | 0.415416 | 1_1:+29214411 | None:intergenic |
| ATATGAACCTTATTATGCTC+TGG | 0.416859 | 1_1:+29213691 | None:intergenic |
| GAGATGAAGTTAAAACTAGA+TGG | 0.426084 | 1_1:-29213127 | Msa0017520:CDS |
| AGTTACAATGCAAGCACAAC+GGG | 0.438906 | 1_1:-29214474 | Msa0017520:CDS |
| CCAGATATCAAGAGTGTAAA+CGG | 0.442402 | 1_1:+29211673 | None:intergenic |
| CAGGCAGATCTCATTAATAC+AGG | 0.447142 | 1_1:-29211771 | Msa0017520:three_prime_UTR |
| AAGTTCATTCATAGTTCGTC+AGG | 0.448784 | 1_1:+29211211 | None:intergenic |
| TAATCAAAGTTTGTCAAGGA+TGG | 0.450137 | 1_1:-29214261 | Msa0017520:intron |
| GGTACAAGTCTCAAAAGATC+TGG | 0.453038 | 1_1:-29213476 | Msa0017520:CDS |
| CCTTGCACACCAAATCTTCA+GGG | 0.463467 | 1_1:+29214447 | None:intergenic |
| AGCGGAGTCAAGAGTTTCAA+AGG | 0.463926 | 1_1:-29213185 | Msa0017520:CDS |
| TGATGAAGCAATTGAGCATA+TGG | 0.464813 | 1_1:-29212272 | Msa0017520:three_prime_UTR |
| AAGAGTTTCAAAGGGTATTG+AGG | 0.466356 | 1_1:-29213176 | Msa0017520:CDS |
| GCAGAATTTCTCACTTGTAA+AGG | 0.477676 | 1_1:-29211474 | Msa0017520:three_prime_UTR |
| TTATTTACAGCAAGCGGTGA+AGG | 0.483076 | 1_1:+29212889 | None:intergenic |
| TTCGTCTAACCATGGGTTCA+GGG | 0.488202 | 1_1:+29214088 | None:intergenic |
| TATATTTCACTATCTTGCTA+TGG | 0.488375 | 1_1:-29212759 | Msa0017520:three_prime_UTR |
| GTTAATGGAGACTCAAAGAA+TGG | 0.489508 | 1_1:-29214165 | Msa0017520:CDS |
| ATTGAAAACATATGACCAAA+AGG | 0.489902 | 1_1:+29212938 | None:intergenic |
| AATGCTCCATCTGATCTGTC+TGG | 0.490201 | 1_1:-29211523 | Msa0017520:three_prime_UTR |
| TACTGTCTTAATCACTGTAT+CGG | 0.494218 | 1_1:+29213240 | None:intergenic |
| GGAACTGAAACCAGGAAAAG+AGG | 0.496214 | 1_1:-29213428 | Msa0017520:CDS |
| TGAGGAGATGAACTCAGTAA+AGG | 0.496472 | 1_1:-29213533 | Msa0017520:CDS |
| GAGGAGATGAACTCAGTAAA+GGG | 0.496692 | 1_1:-29213532 | Msa0017520:CDS |
| AGGAAAAGAGGCAGAGATGA+AGG | 0.499789 | 1_1:-29213416 | Msa0017520:CDS |
| GTCCAAGAAAAGTTCAAGTC+GGG | 0.504636 | 1_1:-29211749 | Msa0017520:three_prime_UTR |
| CAATTGAGTTCACAGGGAAA+AGG | 0.509750 | 1_1:+29211357 | None:intergenic |
| CCCTGAAGATTTGGTGTGCA+AGG | 0.515432 | 1_1:-29214447 | Msa0017520:CDS |
| TACTAATCAATTGAGTTCAC+AGG | 0.522756 | 1_1:+29211350 | None:intergenic |
| AAAGCAGAGGAACTGAAACC+TGG | 0.523769 | 1_1:-29213361 | Msa0017520:CDS |
| GGAGAGCCAAGAGAAGAAGC+AGG | 0.526638 | 1_1:-29213574 | Msa0017520:CDS |
| TGCCTTTCCATTGTTTACTG+TGG | 0.527555 | 1_1:+29213300 | None:intergenic |
| ACAGTAACTTGCGACTTGCT+AGG | 0.530256 | 1_1:+29213017 | None:intergenic |
| CGAACTATGAATGAACTTGA+GGG | 0.530541 | 1_1:-29211206 | Msa0017520:three_prime_UTR |
| TAGAGATTAGCATGAAAGTC+GGG | 0.531474 | 1_1:+29212205 | None:intergenic |
| TTGGATGCTATTAAGGATGT+AGG | 0.531555 | 1_1:-29213595 | Msa0017520:CDS |
| AAATGAAAACAAGGGGAAAG+TGG | 0.541657 | 1_1:+29212598 | None:intergenic |
| TCACGAACCTTAGTATGCTC+TGG | 0.541662 | 1_1:+29213667 | None:intergenic |
| CCCACTTCTATATGTCTGCA+TGG | 0.542803 | 1_1:-29211724 | Msa0017520:three_prime_UTR |
| TTTATAATCAAAGTTTGTCA+AGG | 0.543341 | 1_1:-29214265 | Msa0017520:intron |
| CTAACCTTATTAAAATGGGG+TGG | 0.544581 | 1_1:-29212245 | Msa0017520:three_prime_UTR |
| TGAAGATGTTACTTCCAGCT+TGG | 0.553773 | 1_1:-29214378 | Msa0017520:intron |
| ATGAAGGTGTCAAAAGATCT+GGG | 0.554191 | 1_1:-29213400 | Msa0017520:CDS |
| TCATATACCAGAGCATACTA+AGG | 0.554759 | 1_1:-29213674 | Msa0017520:CDS |
| TTCCTAACCTTATTAAAATG+GGG | 0.556230 | 1_1:-29212248 | Msa0017520:three_prime_UTR |
| TATTGAGGAGCTGAAACTGC+TGG | 0.560970 | 1_1:-29213161 | Msa0017520:CDS |
| AGTACAAGGTATATAGCGGT+CGG | 0.562262 | 1_1:-29211444 | Msa0017520:three_prime_UTR |
| GTACAAGGTATATAGCGGTC+GGG | 0.562608 | 1_1:-29211443 | Msa0017520:three_prime_UTR |
| TATTTACAGCAAGCGGTGAA+GGG | 0.563134 | 1_1:+29212890 | None:intergenic |
| TAATAGTTATTTACAGCAAG+CGG | 0.565680 | 1_1:+29212883 | None:intergenic |
| AAAGCTCCTAACATCCATAC+AGG | 0.567411 | 1_1:-29212343 | Msa0017520:three_prime_UTR |
| GGTAGAATATGATATGGGGT+TGG | 0.570375 | 1_1:-29213614 | Msa0017520:CDS |
| ACGAACTATGAATGAACTTG+AGG | 0.570667 | 1_1:-29211207 | Msa0017520:three_prime_UTR |
| GCGGAGTCAAGAGTTTCAAA+GGG | 0.572722 | 1_1:-29213184 | Msa0017520:CDS |
| TAAGTATATCCATACCAAGC+TGG | 0.573060 | 1_1:+29214364 | None:intergenic |
| TAGATGACTGATGAGATTAG+TGG | 0.575372 | 1_1:-29211420 | Msa0017520:three_prime_UTR |
| TATGGACCAGACAGATCAGA+TGG | 0.577642 | 1_1:+29211517 | None:intergenic |
| GTTGAAAGTGTCAAGAGTTG+AGG | 0.580023 | 1_1:-29213551 | Msa0017520:CDS |
| AATTTAATCAAATGAAAACA+AGG | 0.581727 | 1_1:+29212589 | None:intergenic |
| AATCCAGTCCCCTGAACCCA+TGG | 0.582271 | 1_1:-29214097 | Msa0017520:intron |
| ATTTAATCAAATGAAAACAA+GGG | 0.588911 | 1_1:+29212590 | None:intergenic |
| GTAGAGATTAGCATGAAAGT+CGG | 0.592962 | 1_1:+29212204 | None:intergenic |
| CCAAGTTAACAGAGGAGAGG+AGG | 0.593009 | 1_1:-29212122 | Msa0017520:three_prime_UTR |
| ATATAAGTTTGAATTAGAGA+AGG | 0.594130 | 1_1:-29212522 | Msa0017520:three_prime_UTR |
| ATTCTTTGCTGGCTCCTCTG+TGG | 0.598825 | 1_1:+29212499 | None:intergenic |
| AATGCAGAGGAACTGAAACC+AGG | 0.603182 | 1_1:-29213436 | Msa0017520:CDS |
| TTAATTATACTTTCAATGCG+TGG | 0.605126 | 1_1:-29212687 | Msa0017520:three_prime_UTR |
| ACTAGTTCTGGTGAATCAGG+TGG | 0.606820 | 1_1:+29214192 | None:intergenic |
| TATTGAAGAAAATAAGCTGA+AGG | 0.613728 | 1_1:-29214229 | Msa0017520:CDS |
| GGTCCAAGAAAAGTTCAAGT+CGG | 0.614155 | 1_1:-29211750 | Msa0017520:three_prime_UTR |
| GAGGAGGTTAAGCAATCAAG+AGG | 0.616339 | 1_1:-29212106 | Msa0017520:three_prime_UTR |
| TCGTCTAACCATGGGTTCAG+GGG | 0.618454 | 1_1:+29214089 | None:intergenic |
| CTCCTAATATAACAAACTTG+AGG | 0.620387 | 1_1:+29211611 | None:intergenic |
| ACTTGAGTCAAAGCTAAATG+AGG | 0.624176 | 1_1:-29213104 | Msa0017520:CDS |
| GTTCTTAGTCCAAAGCACAT+TGG | 0.626743 | 1_1:-29214420 | Msa0017520:CDS |
| GACCACAGTAAACAATGGAA+AGG | 0.626884 | 1_1:-29213302 | Msa0017520:CDS |
| TTTAATCAAATGAAAACAAG+GGG | 0.626903 | 1_1:+29212591 | None:intergenic |
| TCGTGATGCAGAGATTGAAG+AGG | 0.628341 | 1_1:-29213650 | Msa0017520:CDS |
| ACCATGCAGACATATAGAAG+TGG | 0.631855 | 1_1:+29211723 | None:intergenic |
| GTTTACACTCTTGATATCTG+GGG | 0.632135 | 1_1:-29211671 | Msa0017520:three_prime_UTR |
| GATGAACTCAGTAAAGGGTG+CGG | 0.632166 | 1_1:-29213527 | Msa0017520:CDS |
| GAGAGCCAAGAGAAGAAGCA+GGG | 0.633793 | 1_1:-29213573 | Msa0017520:CDS |
| TAAGACAGTAAAGAATGTTG+AGG | 0.634008 | 1_1:-29213227 | Msa0017520:CDS |
| TGAAGGTAGAATATGATATG+GGG | 0.634862 | 1_1:-29213618 | Msa0017520:CDS |
| AACAATATCCAAGTTAACAG+AGG | 0.640525 | 1_1:-29212130 | Msa0017520:three_prime_UTR |
| ACTAATCAATTGAGTTCACA+GGG | 0.640770 | 1_1:+29211351 | None:intergenic |
| TGAAGAAAATAAGCTGAAGG+TGG | 0.641027 | 1_1:-29214226 | Msa0017520:CDS |
| TTTACACTCTTGATATCTGG+GGG | 0.641415 | 1_1:-29211670 | Msa0017520:three_prime_UTR |
| CCATGCAGACATATAGAAGT+GGG | 0.643537 | 1_1:+29211724 | None:intergenic |
| GAACTCAGTAAAGGGTGCGG+AGG | 0.643899 | 1_1:-29213524 | Msa0017520:CDS |
| CTAGTTCTGGTGAATCAGGT+GGG | 0.646582 | 1_1:+29214193 | None:intergenic |
| CATTTGACCACAGTAAACAA+TGG | 0.650155 | 1_1:-29213307 | Msa0017520:CDS |
| TATCCAAGTTAACAGAGGAG+AGG | 0.652511 | 1_1:-29212125 | Msa0017520:three_prime_UTR |
| GCTGGAAGTAACATCTTCAG+TGG | 0.653214 | 1_1:+29214382 | None:intergenic |
| TGAATTAGAGAAGGCCACAG+AGG | 0.653557 | 1_1:-29212513 | Msa0017520:three_prime_UTR |
| CAGTTACAATGCAAGCACAA+CGG | 0.657510 | 1_1:-29214475 | Msa0017520:CDS |
| GTAAAGGTACAGATAGTACA+AGG | 0.666698 | 1_1:-29211458 | Msa0017520:three_prime_UTR |
| TAACCAAAATCTTGACAAGG+TGG | 0.668289 | 1_1:+29212982 | None:intergenic |
| ACTTCTATATGTCTGCATGG+TGG | 0.671243 | 1_1:-29211721 | Msa0017520:three_prime_UTR |
| CTTGCACACCAAATCTTCAG+GGG | 0.675637 | 1_1:+29214448 | None:intergenic |
| ATTGTTACTCCAGACTACAA+AGG | 0.682862 | 1_1:+29212147 | None:intergenic |
| AGATAGTACAAGGTATATAG+CGG | 0.684320 | 1_1:-29211448 | Msa0017520:three_prime_UTR |
| TAATAACCAAAATCTTGACA+AGG | 0.687571 | 1_1:+29212979 | None:intergenic |
| AATCACAGTAAAGAAAGCAG+AGG | 0.689548 | 1_1:-29213374 | Msa0017520:CDS |
| AATCACAGTAAAGAATGCAG+AGG | 0.689548 | 1_1:-29213449 | Msa0017520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAATTTTTAAATTATA+TGG | - | chr1_1:29214180-29214199 | Msa0017520:CDS | 0.0% |
| !!! | TTATTTTCTCAGATTATTAT+CGG | + | chr1_1:29211553-29211572 | None:intergenic | 15.0% |
| !! | GTTAATATTCAAAAAACTTA+TGG | + | chr1_1:29212244-29212263 | None:intergenic | 15.0% |
| !! | AAAAACAGAAATAAAATTAG+GGG | + | chr1_1:29212325-29212344 | None:intergenic | 15.0% |
| !! | GAAAAACAGAAATAAAATTA+GGG | + | chr1_1:29212326-29212345 | None:intergenic | 15.0% |
| !! | AGAAAAACAGAAATAAAATT+AGG | + | chr1_1:29212327-29212346 | None:intergenic | 15.0% |
| !! | AAAAAAAATTCACAATAGAA+TGG | + | chr1_1:29213776-29213795 | None:intergenic | 15.0% |
| !!! | AAAAACTTGTTTAAATTAGT+AGG | - | chr1_1:29213997-29214016 | Msa0017520:intron | 15.0% |
| !! | ATTTAATCAAATGAAAACAA+GGG | + | chr1_1:29214256-29214275 | None:intergenic | 15.0% |
| !! | AATTTAATCAAATGAAAACA+AGG | + | chr1_1:29214257-29214276 | None:intergenic | 15.0% |
| !!! | AAATGAAAACTAAATTTTAC+AGG | + | chr1_1:29215020-29215039 | None:intergenic | 15.0% |
| !! | ATAAGTTGTTTATTCAAACA+AGG | - | chr1_1:29211979-29211998 | Msa0017520:intron | 20.0% |
| !!! | ATTTTTGGATATTCATTGAA+TGG | - | chr1_1:29212122-29212141 | Msa0017520:three_prime_UTR | 20.0% |
| !! | TTTATAATCAAAGTTTGTCA+AGG | - | chr1_1:29212578-29212597 | Msa0017520:three_prime_UTR | 20.0% |
| !!! | AATTATCTTTCTAAAGGATT+TGG | + | chr1_1:29212844-29212863 | None:intergenic | 20.0% |
| !!! | AAATCCTTTAGAAAGATAAT+TGG | - | chr1_1:29212843-29212862 | Msa0017520:three_prime_UTR | 20.0% |
| !! | CAAATTTCAAGAACATTATA+TGG | + | chr1_1:29213116-29213135 | None:intergenic | 20.0% |
| !! | TTTAATCAAATGAAAACAAG+GGG | + | chr1_1:29214255-29214274 | None:intergenic | 20.0% |
| !! | ATATAAGTTTGAATTAGAGA+AGG | - | chr1_1:29214321-29214340 | Msa0017520:intron | 20.0% |
| !! | CGATACTTTGTATATAATAT+TGG | - | chr1_1:29214548-29214567 | Msa0017520:intron | 20.0% |
| !! | TTTCCTAACCTTATTAAAAT+GGG | - | chr1_1:29214594-29214613 | Msa0017520:intron | 20.0% |
| !!! | AGTAAATAGTAATGTTTTTG+TGG | - | chr1_1:29214813-29214832 | Msa0017520:intron | 20.0% |
| !!! | GTAAATAGTAATGTTTTTGT+GGG | - | chr1_1:29214814-29214833 | Msa0017520:intron | 20.0% |
| !! | TAAATTTACATGAAAAAGTG+CGG | + | chr1_1:29214968-29214987 | None:intergenic | 20.0% |
| !!! | AAATTTTACAGGCTTAATAA+GGG | + | chr1_1:29215009-29215028 | None:intergenic | 20.0% |
| !!! | TAAATTTTACAGGCTTAATA+AGG | + | chr1_1:29215010-29215029 | None:intergenic | 20.0% |
| ! | AATTACAGCACATTAATCAA+TGG | + | chr1_1:29211221-29211240 | None:intergenic | 25.0% |
| !! | ATCGCATTTCTTTCAATTTT+TGG | - | chr1_1:29211331-29211350 | Msa0017520:three_prime_UTR | 25.0% |
| !!! | AATCGTTTTTGTATGTTTTC+AGG | - | chr1_1:29211384-29211403 | Msa0017520:three_prime_UTR | 25.0% |
| !! | TTGAAATTTTCAATCAGACT+TGG | - | chr1_1:29211723-29211742 | Msa0017520:three_prime_UTR | 25.0% |
| !! | TGAAATTTTCAATCAGACTT+GGG | - | chr1_1:29211724-29211743 | Msa0017520:three_prime_UTR | 25.0% |
| !!! | TTGTTTTTCGTAAGTTATCT+TGG | + | chr1_1:29211862-29211881 | None:intergenic | 25.0% |
| ! | TGATATCAACAAGAACAATA+AGG | + | chr1_1:29212005-29212024 | None:intergenic | 25.0% |
| ! | TTAAAACTCTATTGAGAGTA+AGG | - | chr1_1:29212079-29212098 | Msa0017520:intron | 25.0% |
| ! | GACTTAAATTTGTCATGTTA+GGG | - | chr1_1:29212144-29212163 | Msa0017520:three_prime_UTR | 25.0% |
| ! | ACTTAAATTTGTCATGTTAG+GGG | - | chr1_1:29212145-29212164 | Msa0017520:three_prime_UTR | 25.0% |
| ! | TATTGAAGAAAATAAGCTGA+AGG | - | chr1_1:29212614-29212633 | Msa0017520:three_prime_UTR | 25.0% |
| ! | ACTTCCAATTATCTTTCTAA+AGG | + | chr1_1:29212850-29212869 | None:intergenic | 25.0% |
| ! | ATTTGAAAATTACCTTGCTA+TGG | - | chr1_1:29212928-29212947 | Msa0017520:three_prime_UTR | 25.0% |
| ! | ATAATCCAACATATACACAA+AGG | + | chr1_1:29213063-29213082 | None:intergenic | 25.0% |
| ! | GTAATTGATAAGTAGAAGTT+GGG | + | chr1_1:29213092-29213111 | None:intergenic | 25.0% |
| ! | TAATGTTCTTGAAATTTGTC+AGG | - | chr1_1:29213118-29213137 | Msa0017520:CDS | 25.0% |
| ! | TAAAAAACCAGAGCATAATA+AGG | - | chr1_1:29213145-29213164 | Msa0017520:CDS | 25.0% |
| ! | TTGAAGGTAGAATATGATAT+GGG | - | chr1_1:29213224-29213243 | Msa0017520:CDS | 25.0% |
| !!! | TTTGACTCTATTTCTTTTTC+TGG | + | chr1_1:29213575-29213594 | None:intergenic | 25.0% |
| !!! | TTTTAACTTCATCTCTTCAA+TGG | + | chr1_1:29213711-29213730 | None:intergenic | 25.0% |
| ! | AAAAATTCACAATAGAATGG+TGG | + | chr1_1:29213773-29213792 | None:intergenic | 25.0% |
| ! | TAATAACCAAAATCTTGACA+AGG | + | chr1_1:29213867-29213886 | None:intergenic | 25.0% |
| ! | ATTGAAAACATATGACCAAA+AGG | + | chr1_1:29213908-29213927 | None:intergenic | 25.0% |
| ! | TAATAGTTATTTACAGCAAG+CGG | + | chr1_1:29213963-29213982 | None:intergenic | 25.0% |
| ! | GCAAGATAGTGAAATATAAT+TGG | + | chr1_1:29214082-29214101 | None:intergenic | 25.0% |
| ! | TATATTTCACTATCTTGCTA+TGG | - | chr1_1:29214084-29214103 | Msa0017520:intron | 25.0% |
| ! | TTAATTATACTTTCAATGCG+TGG | - | chr1_1:29214156-29214175 | Msa0017520:CDS | 25.0% |
| !! | AAGAATCTTTTTGGATGTAT+AGG | - | chr1_1:29214361-29214380 | Msa0017520:intron | 25.0% |
| !! | AGAATCTTTTTGGATGTATA+GGG | - | chr1_1:29214362-29214381 | Msa0017520:intron | 25.0% |
| !! | ATCGATAAACATTTTCACAT+AGG | + | chr1_1:29214532-29214551 | None:intergenic | 25.0% |
| ! | GTTTCCTAACCTTATTAAAA+TGG | - | chr1_1:29214593-29214612 | Msa0017520:intron | 25.0% |
| ! | TTCCTAACCTTATTAAAATG+GGG | - | chr1_1:29214595-29214614 | Msa0017520:intron | 25.0% |
| ! | TAAGTTCATTTCAACATATG+CGG | + | chr1_1:29214941-29214960 | None:intergenic | 25.0% |
| ! | ATGTAAATTTAGTCCTCTTT+AGG | - | chr1_1:29214977-29214996 | Msa0017520:intron | 25.0% |
| ! | TGTAAATTTAGTCCTCTTTA+GGG | - | chr1_1:29214978-29214997 | Msa0017520:intron | 25.0% |
| !! | AATTTTACAGGCTTAATAAG+GGG | + | chr1_1:29215008-29215027 | None:intergenic | 25.0% |
| !!! | GTTTTCATTTTAGAAACTCA+AGG | - | chr1_1:29215030-29215049 | Msa0017520:intron | 25.0% |
| !!! | GTTTGTTATATTAGGAGTTT+AGG | - | chr1_1:29215238-29215257 | Msa0017520:intron | 25.0% |
| ACTATGAAGCACAAATACTT+TGG | + | chr1_1:29211640-29211659 | None:intergenic | 30.0% | |
| ! | GAAATTTTCAATCAGACTTG+GGG | - | chr1_1:29211725-29211744 | Msa0017520:three_prime_UTR | 30.0% |
| !!! | ACTGGCATAAGTTTTTTAGA+CGG | - | chr1_1:29211765-29211784 | Msa0017520:three_prime_UTR | 30.0% |
| TTCTTGTTGATATCAGTTAG+AGG | - | chr1_1:29212010-29212029 | Msa0017520:intron | 30.0% | |
| GGACTTAAATTTGTCATGTT+AGG | - | chr1_1:29212143-29212162 | Msa0017520:three_prime_UTR | 30.0% | |
| TAATCAAAGTTTGTCAAGGA+TGG | - | chr1_1:29212582-29212601 | Msa0017520:three_prime_UTR | 30.0% | |
| CATGAAAAAGTTCAGATACA+TGG | - | chr1_1:29212708-29212727 | Msa0017520:three_prime_UTR | 30.0% | |
| AACGTCTATGAAAGAAAAAG+AGG | + | chr1_1:29212821-29212840 | None:intergenic | 30.0% | |
| CGTAATTGATAAGTAGAAGT+TGG | + | chr1_1:29213093-29213112 | None:intergenic | 30.0% | |
| ATATGAACCTTATTATGCTC+TGG | + | chr1_1:29213155-29213174 | None:intergenic | 30.0% | |
| GTTGAAGGTAGAATATGATA+TGG | - | chr1_1:29213223-29213242 | Msa0017520:CDS | 30.0% | |
| TGAAGGTAGAATATGATATG+GGG | - | chr1_1:29213225-29213244 | Msa0017520:CDS | 30.0% | |
| GAAACCACAGAAAAAAATAG+AGG | - | chr1_1:29213346-29213365 | Msa0017520:CDS | 30.0% | |
| !!! | TGTACCTCTATTTTTTTCTG+TGG | + | chr1_1:29213353-29213372 | None:intergenic | 30.0% |
| TACTGTCTTAATCACTGTAT+CGG | + | chr1_1:29213606-29213625 | None:intergenic | 30.0% | |
| TAAGACAGTAAAGAATGTTG+AGG | - | chr1_1:29213616-29213635 | Msa0017520:CDS | 30.0% | |
| GAGATGAAGTTAAAACTAGA+TGG | - | chr1_1:29213716-29213735 | Msa0017520:intron | 30.0% | |
| ! | TTGAGATTTGAGATGTTAGT+TGG | - | chr1_1:29213929-29213948 | Msa0017520:intron | 30.0% |
| !! | GCTTGCTGTAAATAACTATT+AGG | - | chr1_1:29213962-29213981 | Msa0017520:intron | 30.0% |
| ! | GAATCTTTTTGGATGTATAG+GGG | - | chr1_1:29214363-29214382 | Msa0017520:intron | 30.0% |
| ! | CACGATAAACATTTTCACAT+AGG | + | chr1_1:29214450-29214469 | None:intergenic | 30.0% |
| AACAATATCCAAGTTAACAG+AGG | - | chr1_1:29214713-29214732 | Msa0017520:intron | 30.0% | |
| ACTTAAAAATTCCTCCAAAC+TGG | + | chr1_1:29214867-29214886 | None:intergenic | 30.0% | |
| !!! | GAATTTTTAAGTGCACTTGT+AGG | - | chr1_1:29214875-29214894 | Msa0017520:intron | 30.0% |
| TCAAAATGTTAGTATCTTCC+TGG | + | chr1_1:29215208-29215227 | None:intergenic | 30.0% | |
| !! | TGCCTCAAGTTTGTTATATT+AGG | - | chr1_1:29215230-29215249 | Msa0017520:intron | 30.0% |
| CTCCTAATATAACAAACTTG+AGG | + | chr1_1:29215235-29215254 | None:intergenic | 30.0% | |
| ! | CAGTGATTTTTCTATACTTG+AGG | - | chr1_1:29215292-29215311 | Msa0017520:intron | 30.0% |
| AGATAGTACAAGGTATATAG+CGG | - | chr1_1:29215395-29215414 | Msa0017520:intron | 30.0% | |
| ACTAATCAATTGAGTTCACA+GGG | + | chr1_1:29215495-29215514 | None:intergenic | 30.0% | |
| TACTAATCAATTGAGTTCAC+AGG | + | chr1_1:29215496-29215515 | None:intergenic | 30.0% | |
| !!! | TTAGTAGTTTTGTTGAGTTG+TGG | - | chr1_1:29215510-29215529 | Msa0017520:intron | 30.0% |
| !! | CAAGTGCAACTATTTTTCAA+AGG | + | chr1_1:29215610-29215629 | None:intergenic | 30.0% |
| GAAGAAACAAAGTTCGTGTA+CGG | - | chr1_1:29211262-29211281 | Msa0017520:three_prime_UTR | 35.0% | |
| GGTCGAACTGAATATTTCTT+AGG | + | chr1_1:29211424-29211443 | None:intergenic | 35.0% | |
| TATTCAGTTCGACCAAATGT+TGG | - | chr1_1:29211430-29211449 | Msa0017520:three_prime_UTR | 35.0% | |
| TGTTTGTTTGTTTGCTTGCT+TGG | - | chr1_1:29211507-29211526 | Msa0017520:three_prime_UTR | 35.0% | |
| ACTTTGGATTAAGCGTAACA+AGG | + | chr1_1:29211624-29211643 | None:intergenic | 35.0% | |
| ! | GCTTGTTTGAGTTTATCTAC+TGG | - | chr1_1:29211747-29211766 | Msa0017520:three_prime_UTR | 35.0% |
| TTCAATTGCATCAACGATCA+AGG | + | chr1_1:29212047-29212066 | None:intergenic | 35.0% | |
| ! | TCGTTGTGGTGGTTAATTTT+TGG | - | chr1_1:29212107-29212126 | Msa0017520:three_prime_UTR | 35.0% |
| TCAAAAAACTTATGGCTGCA+AGG | + | chr1_1:29212236-29212255 | None:intergenic | 35.0% | |
| TAAGTATATCCATACCAAGC+TGG | + | chr1_1:29212482-29212501 | None:intergenic | 35.0% | |
| ! | ACCACTGAAGATTTTGTATC+TGG | - | chr1_1:29212506-29212525 | Msa0017520:three_prime_UTR | 35.0% |
| ACCAGATACAAAATCTTCAG+TGG | + | chr1_1:29212510-29212529 | None:intergenic | 35.0% | |
| TGAAGAAAATAAGCTGAAGG+TGG | - | chr1_1:29212617-29212636 | Msa0017520:three_prime_UTR | 35.0% | |
| TTCTTTGAGTCTCCATTAAC+AGG | + | chr1_1:29212678-29212697 | None:intergenic | 35.0% | |
| GTTAATGGAGACTCAAAGAA+TGG | - | chr1_1:29212678-29212697 | Msa0017520:three_prime_UTR | 35.0% | |
| ATGAAGTTTCGTCTAACCAT+GGG | + | chr1_1:29212765-29212784 | None:intergenic | 35.0% | |
| AGACGAAACTTCATGATGTT+TGG | - | chr1_1:29212771-29212790 | Msa0017520:three_prime_UTR | 35.0% | |
| GTCTATGAAAGAAAAAGAGG+CGG | + | chr1_1:29212818-29212837 | None:intergenic | 35.0% | |
| ! | TGAATTTTCTTTAGTCCCCT+GGG | - | chr1_1:29212971-29212990 | Msa0017520:three_prime_UTR | 35.0% |
| TTCAAAGAATTTCATCCCAG+GGG | + | chr1_1:29212989-29213008 | None:intergenic | 35.0% | |
| GTTCAAAGAATTTCATCCCA+GGG | + | chr1_1:29212990-29213009 | None:intergenic | 35.0% | |
| TGTTGCCTTTGTGTATATGT+TGG | - | chr1_1:29213055-29213074 | Msa0017520:CDS | 35.0% | |
| TCATATACCAGAGCATACTA+AGG | - | chr1_1:29213169-29213188 | Msa0017520:CDS | 35.0% | |
| TTGGATGCTATTAAGGATGT+AGG | - | chr1_1:29213248-29213267 | Msa0017520:CDS | 35.0% | |
| AATCACAGTAAAGAATGCAG+AGG | - | chr1_1:29213394-29213413 | Msa0017520:CDS | 35.0% | |
| !! | ATGAAGGTGTCAAAAGATCT+GGG | - | chr1_1:29213443-29213462 | Msa0017520:CDS | 35.0% |
| AATCACAGTAAAGAAAGCAG+AGG | - | chr1_1:29213469-29213488 | Msa0017520:CDS | 35.0% | |
| CATTTGACCACAGTAAACAA+TGG | - | chr1_1:29213536-29213555 | Msa0017520:CDS | 35.0% | |
| !! | AAGAGTTTCAAAGGGTATTG+AGG | - | chr1_1:29213667-29213686 | Msa0017520:CDS | 35.0% |
| ACTTGAGTCAAAGCTAAATG+AGG | - | chr1_1:29213739-29213758 | Msa0017520:intron | 35.0% | |
| TAACCAAAATCTTGACAAGG+TGG | + | chr1_1:29213864-29213883 | None:intergenic | 35.0% | |
| ! | TTTTGTCTTAGCACTCCTTT+TGG | - | chr1_1:29213890-29213909 | Msa0017520:intron | 35.0% |
| AAATGAAAACAAGGGGAAAG+TGG | + | chr1_1:29214248-29214267 | None:intergenic | 35.0% | |
| CATCCAAAAAGATTCTTTGC+TGG | + | chr1_1:29214358-29214377 | None:intergenic | 35.0% | |
| TGATGAAGCAATTGAGCATA+TGG | - | chr1_1:29214571-29214590 | Msa0017520:intron | 35.0% | |
| !! | CACCCCATTTTAATAAGGTT+AGG | + | chr1_1:29214600-29214619 | None:intergenic | 35.0% |
| CTAACCTTATTAAAATGGGG+TGG | - | chr1_1:29214598-29214617 | Msa0017520:intron | 35.0% | |
| !! | ACATCCACCCCATTTTAATA+AGG | + | chr1_1:29214605-29214624 | None:intergenic | 35.0% |
| TAGAGATTAGCATGAAAGTC+GGG | + | chr1_1:29214641-29214660 | None:intergenic | 35.0% | |
| GTAGAGATTAGCATGAAAGT+CGG | + | chr1_1:29214642-29214661 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCCTTTGTAGTC+TGG | - | chr1_1:29214687-29214706 | Msa0017520:intron | 35.0% |
| ATTGTTACTCCAGACTACAA+AGG | + | chr1_1:29214699-29214718 | None:intergenic | 35.0% | |
| TTCTTGCCATATTACCAGTT+TGG | - | chr1_1:29214850-29214869 | Msa0017520:intron | 35.0% | |
| ATTCCTCCAAACTGGTAATA+TGG | + | chr1_1:29214859-29214878 | None:intergenic | 35.0% | |
| !! | TCATTTTAGAAACTCAAGGC+TGG | - | chr1_1:29215034-29215053 | Msa0017520:intron | 35.0% |
| !!! | CTGGCTTGTTTTATATTTGC+AGG | - | chr1_1:29215053-29215072 | Msa0017520:intron | 35.0% |
| ! | CCAGATATCAAGAGTGTAAA+CGG | + | chr1_1:29215173-29215192 | None:intergenic | 35.0% |
| CGTTTACACTCTTGATATCT+GGG | - | chr1_1:29215171-29215190 | Msa0017520:intron | 35.0% | |
| GTTTACACTCTTGATATCTG+GGG | - | chr1_1:29215172-29215191 | Msa0017520:intron | 35.0% | |
| TTTACACTCTTGATATCTGG+GGG | - | chr1_1:29215173-29215192 | Msa0017520:intron | 35.0% | |
| ATACAAACGCAACGTGATTA+TGG | + | chr1_1:29215347-29215366 | None:intergenic | 35.0% | |
| GCAGAATTTCTCACTTGTAA+AGG | - | chr1_1:29215369-29215388 | Msa0017520:intron | 35.0% | |
| ! | GTAAAGGTACAGATAGTACA+AGG | - | chr1_1:29215385-29215404 | Msa0017520:intron | 35.0% |
| TAGATGACTGATGAGATTAG+TGG | - | chr1_1:29215423-29215442 | Msa0017520:intron | 35.0% | |
| TGATGAGATTAGTGGAAAAC+TGG | - | chr1_1:29215431-29215450 | Msa0017520:intron | 35.0% | |
| AAGTTCATTCATAGTTCGTC+AGG | + | chr1_1:29215635-29215654 | None:intergenic | 35.0% | |
| ACGAACTATGAATGAACTTG+AGG | - | chr1_1:29215636-29215655 | Msa0017520:intron | 35.0% | |
| CGAACTATGAATGAACTTGA+GGG | - | chr1_1:29215637-29215656 | Msa0017520:intron | 35.0% | |
| ATGATACCTTGAAAGCGACA+TGG | + | chr1_1:29211313-29211332 | None:intergenic | 40.0% | |
| ! | ATGAATTCGCCAGTAGCTTT+TGG | + | chr1_1:29211466-29211485 | None:intergenic | 40.0% |
| AAAGCTACTGGCGAATTCAT+AGG | - | chr1_1:29211466-29211485 | Msa0017520:three_prime_UTR | 40.0% | |
| CATATGAGTATGTGTCGTGT+CGG | - | chr1_1:29211588-29211607 | Msa0017520:three_prime_UTR | 40.0% | |
| GATTAAGCGTAACAAGGTGT+TGG | + | chr1_1:29211618-29211637 | None:intergenic | 40.0% | |
| AGAGTAAGGTTTAGTCGTTG+TGG | - | chr1_1:29212093-29212112 | Msa0017520:three_prime_UTR | 40.0% | |
| CAGTTACAATGCAAGCACAA+CGG | - | chr1_1:29212368-29212387 | Msa0017520:intron | 40.0% | |
| AGTTACAATGCAAGCACAAC+GGG | - | chr1_1:29212369-29212388 | Msa0017520:intron | 40.0% | |
| GTTCTTAGTCCAAAGCACAT+TGG | - | chr1_1:29212423-29212442 | Msa0017520:intron | 40.0% | |
| ! | TGAAGATGTTACTTCCAGCT+TGG | - | chr1_1:29212465-29212484 | Msa0017520:three_prime_UTR | 40.0% |
| ! | ATGTTACTTCCAGCTTGGTA+TGG | - | chr1_1:29212470-29212489 | Msa0017520:three_prime_UTR | 40.0% |
| CCATTAACAGGAACTAGTTC+TGG | + | chr1_1:29212666-29212685 | None:intergenic | 40.0% | |
| CCAGAACTAGTTCCTGTTAA+TGG | - | chr1_1:29212663-29212682 | Msa0017520:three_prime_UTR | 40.0% | |
| CATGAAGTTTCGTCTAACCA+TGG | + | chr1_1:29212766-29212785 | None:intergenic | 40.0% | |
| AGTCTTAGTCACACACTCTA+AGG | - | chr1_1:29212867-29212886 | Msa0017520:three_prime_UTR | 40.0% | |
| GTCTTAGTCACACACTCTAA+GGG | - | chr1_1:29212868-29212887 | Msa0017520:three_prime_UTR | 40.0% | |
| ! | GTGAATTTTCTTTAGTCCCC+TGG | - | chr1_1:29212970-29212989 | Msa0017520:three_prime_UTR | 40.0% |
| CGTTCAAAGAATTTCATCCC+AGG | + | chr1_1:29212991-29213010 | None:intergenic | 40.0% | |
| TGCAGAGATTGAAGAGGATA+TGG | - | chr1_1:29213199-29213218 | Msa0017520:CDS | 40.0% | |
| TGAAGAGGATATGGAGTTGA+AGG | - | chr1_1:29213208-29213227 | Msa0017520:CDS | 40.0% | |
| GGTAGAATATGATATGGGGT+TGG | - | chr1_1:29213229-29213248 | Msa0017520:CDS | 40.0% | |
| TATGGGGTTGGATGCTATTA+AGG | - | chr1_1:29213241-29213260 | Msa0017520:CDS | 40.0% | |
| !! | GTTGAAAGTGTCAAGAGTTG+AGG | - | chr1_1:29213292-29213311 | Msa0017520:CDS | 40.0% |
| TGAGGAGATGAACTCAGTAA+AGG | - | chr1_1:29213310-29213329 | Msa0017520:CDS | 40.0% | |
| GAGGAGATGAACTCAGTAAA+GGG | - | chr1_1:29213311-29213330 | Msa0017520:CDS | 40.0% | |
| GGTACAAGTCTCAAAAGATC+TGG | - | chr1_1:29213367-29213386 | Msa0017520:CDS | 40.0% | |
| !! | GATGAAGGTGTCAAAAGATC+TGG | - | chr1_1:29213442-29213461 | Msa0017520:CDS | 40.0% |
| ! | TTCAAGTCTGCTTCTTTTCC+AGG | + | chr1_1:29213503-29213522 | None:intergenic | 40.0% |
| GACCACAGTAAACAATGGAA+AGG | - | chr1_1:29213541-29213560 | Msa0017520:CDS | 40.0% | |
| TGCCTTTCCATTGTTTACTG+TGG | + | chr1_1:29213546-29213565 | None:intergenic | 40.0% | |
| ACTGAAGCCAGAAAAAGAAG+CGG | - | chr1_1:29213640-29213659 | Msa0017520:CDS | 40.0% | |
| TATTTACAGCAAGCGGTGAA+GGG | + | chr1_1:29213956-29213975 | None:intergenic | 40.0% | |
| TTATTTACAGCAAGCGGTGA+AGG | + | chr1_1:29213957-29213976 | None:intergenic | 40.0% | |
| ! | GAGCCAGCAAAGAATCTTTT+TGG | - | chr1_1:29214352-29214371 | Msa0017520:intron | 40.0% |
| AAAGCTCCTAACATCCATAC+AGG | - | chr1_1:29214418-29214437 | Msa0017520:CDS | 40.0% | |
| ATTGAGCCTGTATGGATGTT+AGG | + | chr1_1:29214427-29214446 | None:intergenic | 40.0% | |
| AAAGCTCCTAACATCCATAC+AGG | - | chr1_1:29214418-29214437 | Msa0017520:CDS | 40.0% | |
| ATTGAGCCTGTATGGATGTT+AGG | + | chr1_1:29214427-29214446 | None:intergenic | 40.0% | |
| TATCCAAGTTAACAGAGGAG+AGG | - | chr1_1:29214718-29214737 | Msa0017520:intron | 40.0% | |
| TTGCCATATTACCAGTTTGG+AGG | - | chr1_1:29214853-29214872 | Msa0017520:intron | 40.0% | |
| CAGGCAGATCTCATTAATAC+AGG | - | chr1_1:29215072-29215091 | Msa0017520:intron | 40.0% | |
| GGTCCAAGAAAAGTTCAAGT+CGG | - | chr1_1:29215093-29215112 | Msa0017520:intron | 40.0% | |
| GTCCAAGAAAAGTTCAAGTC+GGG | - | chr1_1:29215094-29215113 | Msa0017520:intron | 40.0% | |
| !! | AACCCGACTTGAACTTTTCT+TGG | + | chr1_1:29215099-29215118 | None:intergenic | 40.0% |
| CCATGCAGACATATAGAAGT+GGG | + | chr1_1:29215122-29215141 | None:intergenic | 40.0% | |
| ACCATGCAGACATATAGAAG+TGG | + | chr1_1:29215123-29215142 | None:intergenic | 40.0% | |
| ACTTCTATATGTCTGCATGG+TGG | - | chr1_1:29215122-29215141 | Msa0017520:intron | 40.0% | |
| GCACTTATCTGTGTCTTCTT+GGG | - | chr1_1:29215144-29215163 | Msa0017520:intron | 40.0% | |
| CCGTTTACACTCTTGATATC+TGG | - | chr1_1:29215170-29215189 | Msa0017520:intron | 40.0% | |
| AGTACAAGGTATATAGCGGT+CGG | - | chr1_1:29215399-29215418 | Msa0017520:intron | 40.0% | |
| CAATTGAGTTCACAGGGAAA+AGG | + | chr1_1:29215489-29215508 | None:intergenic | 40.0% | |
| ! | ATGAACTTGAGGGTCCTTTT+TGG | - | chr1_1:29215647-29215666 | Msa0017520:intron | 40.0% |
| ACAAAGTTCGTGTACGGTTC+AGG | - | chr1_1:29211268-29211287 | Msa0017520:three_prime_UTR | 45.0% | |
| CTTGAAAGCGACATGGTGAT+AGG | + | chr1_1:29211306-29211325 | None:intergenic | 45.0% | |
| !! | CTATCACCATGTCGCTTTCA+AGG | - | chr1_1:29211304-29211323 | Msa0017520:three_prime_UTR | 45.0% |
| GTAAGGTTTAGTCGTTGTGG+TGG | - | chr1_1:29212096-29212115 | Msa0017520:three_prime_UTR | 45.0% | |
| CGTTGTGCTTGCATTGTAAC+TGG | + | chr1_1:29212370-29212389 | None:intergenic | 45.0% | |
| CTTGCACACCAAATCTTCAG+GGG | + | chr1_1:29212398-29212417 | None:intergenic | 45.0% | |
| CCTTGCACACCAAATCTTCA+GGG | + | chr1_1:29212399-29212418 | None:intergenic | 45.0% | |
| TCCTTGCACACCAAATCTTC+AGG | + | chr1_1:29212400-29212419 | None:intergenic | 45.0% | |
| CTGCATCAACCAATGTGCTT+TGG | + | chr1_1:29212435-29212454 | None:intergenic | 45.0% | |
| GCTGGAAGTAACATCTTCAG+TGG | + | chr1_1:29212464-29212483 | None:intergenic | 45.0% | |
| !! | CTAGTTCTGGTGAATCAGGT+GGG | + | chr1_1:29212653-29212672 | None:intergenic | 45.0% |
| !! | ACTAGTTCTGGTGAATCAGG+TGG | + | chr1_1:29212654-29212673 | None:intergenic | 45.0% |
| !! | GGAACTAGTTCTGGTGAATC+AGG | + | chr1_1:29212657-29212676 | None:intergenic | 45.0% |
| TTCGTCTAACCATGGGTTCA+GGG | + | chr1_1:29212758-29212777 | None:intergenic | 45.0% | |
| TTTCGTCTAACCATGGGTTC+AGG | + | chr1_1:29212759-29212778 | None:intergenic | 45.0% | |
| AGATCTGCAACTCCATAGCA+AGG | + | chr1_1:29212943-29212962 | None:intergenic | 45.0% | |
| TCACGAACCTTAGTATGCTC+TGG | + | chr1_1:29213179-29213198 | None:intergenic | 45.0% | |
| TCGTGATGCAGAGATTGAAG+AGG | - | chr1_1:29213193-29213212 | Msa0017520:CDS | 45.0% | |
| TTCAACCCTGCTTCTTCTCT+TGG | + | chr1_1:29213278-29213297 | None:intergenic | 45.0% | |
| GATGAACTCAGTAAAGGGTG+CGG | - | chr1_1:29213316-29213335 | Msa0017520:CDS | 45.0% | |
| AATGCAGAGGAACTGAAACC+AGG | - | chr1_1:29213407-29213426 | Msa0017520:CDS | 45.0% | |
| GGAACTGAAACCAGGAAAAG+AGG | - | chr1_1:29213415-29213434 | Msa0017520:CDS | 45.0% | |
| ! | TTCATCTCTGCCTCTTTTCC+TGG | + | chr1_1:29213428-29213447 | None:intergenic | 45.0% |
| AGGAAAAGAGGCAGAGATGA+AGG | - | chr1_1:29213427-29213446 | Msa0017520:CDS | 45.0% | |
| AAAGCAGAGGAACTGAAACC+TGG | - | chr1_1:29213482-29213501 | Msa0017520:CDS | 45.0% | |
| ! | CTTGACTCCGCTTCTTTTTC+TGG | + | chr1_1:29213650-29213669 | None:intergenic | 45.0% |
| AGCGGAGTCAAGAGTTTCAA+AGG | - | chr1_1:29213658-29213677 | Msa0017520:CDS | 45.0% | |
| GCGGAGTCAAGAGTTTCAAA+GGG | - | chr1_1:29213659-29213678 | Msa0017520:CDS | 45.0% | |
| TATTGAGGAGCTGAAACTGC+TGG | - | chr1_1:29213682-29213701 | Msa0017520:CDS | 45.0% | |
| ! | ACAGTAACTTGCGACTTGCT+AGG | + | chr1_1:29213829-29213848 | None:intergenic | 45.0% |
| ! | CTGCCACCTTGTCAAGATTT+TGG | - | chr1_1:29213858-29213877 | Msa0017520:intron | 45.0% |
| AGGGGAAAGTGGTGTGTATA+AGG | + | chr1_1:29214237-29214256 | None:intergenic | 45.0% | |
| TGAATTAGAGAAGGCCACAG+AGG | - | chr1_1:29214330-29214349 | Msa0017520:intron | 45.0% | |
| CACATAGGATTGAGCCTGTA+TGG | + | chr1_1:29214435-29214454 | None:intergenic | 45.0% | |
| CACATAGGATTGAGCCTGTA+TGG | + | chr1_1:29214435-29214454 | None:intergenic | 45.0% | |
| GAGGAGGTTAAGCAATCAAG+AGG | - | chr1_1:29214737-29214756 | Msa0017520:intron | 45.0% | |
| ATAAGGGGACATCCCTAAAG+AGG | + | chr1_1:29214993-29215012 | None:intergenic | 45.0% | |
| CCCACTTCTATATGTCTGCA+TGG | - | chr1_1:29215119-29215138 | Msa0017520:intron | 45.0% | |
| GGCACTTATCTGTGTCTTCT+TGG | - | chr1_1:29215143-29215162 | Msa0017520:intron | 45.0% | |
| AATGCTCCATCTGATCTGTC+TGG | - | chr1_1:29215320-29215339 | Msa0017520:intron | 45.0% | |
| TATGGACCAGACAGATCAGA+TGG | + | chr1_1:29215329-29215348 | None:intergenic | 45.0% | |
| GTACAAGGTATATAGCGGTC+GGG | - | chr1_1:29215400-29215419 | Msa0017520:intron | 45.0% | |
| !! | CCCTGAAGATTTGGTGTGCA+AGG | - | chr1_1:29212396-29212415 | Msa0017520:intron | 50.0% |
| TCGTCTAACCATGGGTTCAG+GGG | + | chr1_1:29212757-29212776 | None:intergenic | 50.0% | |
| ACACAAAGGCAACATCAGCG+AGG | + | chr1_1:29213049-29213068 | None:intergenic | 50.0% | |
| GAGAGCCAAGAGAAGAAGCA+GGG | - | chr1_1:29213270-29213289 | Msa0017520:CDS | 50.0% | |
| !! | ATTCTTTGCTGGCTCCTCTG+TGG | + | chr1_1:29214347-29214366 | None:intergenic | 50.0% |
| CCTCCTCTCCTCTGTTAACT+TGG | + | chr1_1:29214724-29214743 | None:intergenic | 50.0% | |
| CCAAGTTAACAGAGGAGAGG+AGG | - | chr1_1:29214721-29214740 | Msa0017520:intron | 50.0% | |
| GGCGCGAGAACTCCAACATT+TGG | + | chr1_1:29211445-29211464 | None:intergenic | 55.0% | |
| GTTCTCGCGCCAAAAGCTAC+TGG | - | chr1_1:29211454-29211473 | Msa0017520:three_prime_UTR | 55.0% | |
| ACGGGTAGCCCCTGAAGATT+TGG | - | chr1_1:29212387-29212406 | Msa0017520:intron | 55.0% | |
| AATCCAGTCCCCTGAACCCA+TGG | - | chr1_1:29212746-29212765 | Msa0017520:three_prime_UTR | 55.0% | |
| TAACCATGGGTTCAGGGGAC+TGG | + | chr1_1:29212752-29212771 | None:intergenic | 55.0% | |
| GGAGAGCCAAGAGAAGAAGC+AGG | - | chr1_1:29213269-29213288 | Msa0017520:CDS | 55.0% | |
| ! | GAACTCAGTAAAGGGTGCGG+AGG | - | chr1_1:29213319-29213338 | Msa0017520:CDS | 55.0% |
| ATCTGGGGGATCAGTCGTCC+AGG | - | chr1_1:29215187-29215206 | Msa0017520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29211189 | 29215676 | 29211189 | ID=Msa0017520;Name=Msa0017520 |
| chr1_1 | mRNA | 29211189 | 29215676 | 29211189 | ID=Msa0017520-mRNA-1;Parent=Msa0017520;Name=Msa0017520-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.66|0.71|1|0.83|0.71|7|1452|338 |
| chr1_1 | exon | 29211189 | 29211790 | 29211189 | ID=Msa0017520-mRNA-1:exon:9744;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29212083 | 29212376 | 29212083 | ID=Msa0017520-mRNA-1:exon:9743;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29212459 | 29213725 | 29212459 | ID=Msa0017520-mRNA-1:exon:9742;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29214098 | 29214274 | 29214098 | ID=Msa0017520-mRNA-1:exon:9741;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29214379 | 29214494 | 29214379 | ID=Msa0017520-mRNA-1:exon:9740;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29215593 | 29215599 | 29215593 | ID=Msa0017520-mRNA-1:exon:9739;Parent=Msa0017520-mRNA-1 |
| chr1_1 | exon | 29215671 | 29215676 | 29215671 | ID=Msa0017520-mRNA-1:exon:9738;Parent=Msa0017520-mRNA-1 |
| chr1_1 | CDS | 29215671 | 29215676 | 29215671 | ID=Msa0017520-mRNA-1:cds;Parent=Msa0017520-mRNA-1 |
| chr1_1 | CDS | 29215593 | 29215599 | 29215593 | ID=Msa0017520-mRNA-1:cds;Parent=Msa0017520-mRNA-1 |
| chr1_1 | CDS | 29214379 | 29214494 | 29214379 | ID=Msa0017520-mRNA-1:cds;Parent=Msa0017520-mRNA-1 |
| chr1_1 | CDS | 29214098 | 29214274 | 29214098 | ID=Msa0017520-mRNA-1:cds;Parent=Msa0017520-mRNA-1 |
| chr1_1 | CDS | 29213015 | 29213725 | 29213015 | ID=Msa0017520-mRNA-1:cds;Parent=Msa0017520-mRNA-1 |
| chr1_1 | three_prime_UTR | 29212459 | 29213014 | 29212459 | ID=Msa0017520-mRNA-1:three_prime_utr;Parent=Msa0017520-mRNA-1 |
| chr1_1 | three_prime_UTR | 29212083 | 29212376 | 29212083 | ID=Msa0017520-mRNA-1:three_prime_utr;Parent=Msa0017520-mRNA-1 |
| chr1_1 | three_prime_UTR | 29211189 | 29211790 | 29211189 | ID=Msa0017520-mRNA-1:three_prime_utr;Parent=Msa0017520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
