AlfalfaGEDB | Msa0079080

M. sativa cultivar zhongmu-4 / Msa0079080

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	KEH43062.1	97.037	270	8	0	2	271	37	306	4.52e-177	503

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	A0A072VMK2	97.037	270	8	0	2	271	37	306	2.16e-177	503

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0079080	0.829682	4.491164e-55	-8.615850e-47
Msa0017520	Msa0079080	0.861772	8.110612e-64	-8.615850e-47
Msa0020930	Msa0079080	0.811597	6.466924e-51	-8.615850e-47
Msa0079080	Msa0094120	0.807494	4.919049e-50	-8.615850e-47
Msa0079080	Msa0110970	0.816615	5.046413e-52	-8.615850e-47
Msa0079080	Msa0114060	0.804210	2.409951e-49	-8.615850e-47
Msa0079080	Msa0127660	0.951138	3.836847e-109	-8.615850e-47
Msa0079080	Msa0136070	0.826559	2.538444e-54	-8.615850e-47
Msa0079080	Msa0136100	0.804784	1.829727e-49	-8.615850e-47
Msa0079080	Msa0157290	0.829708	4.425099e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	MtrunA17_Chr1g0191261	97.037	270	8	0	2	271	107	376	2.42e-180	504

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 129 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGAGGAACTGAAACC+TGG	0.523769	1_2:+56814173	Msa0079080:CDS
AAAGCTCCTAACATCCATAC+AGG	0.567411	1_2:+56815109	Msa0079080:three_prime_UTR
AAATGAAAACAAGGGGAAAG+TGG	0.541657	1_2:-56814936	None:intergenic
AACAATATCCAAGTTAACAG+AGG	0.640525	1_2:+56815322	Msa0079080:three_prime_UTR
AAGAGTTTCAAAGGGTATTG+AGG	0.466356	1_2:+56814358	Msa0079080:CDS
AAGTTCATTCATAGTTCGTC+AGG	0.448784	1_2:-56816241	None:intergenic
AATCACAGTAAAGAATGCAG+AGG	0.689548	1_2:+56814085	Msa0079080:CDS
AATCCAGTCCCCTGAACCCA+TGG	0.582271	1_2:+56813437	Msa0079080:CDS
AATGCAGAGGAACTGAAACC+AGG	0.603182	1_2:+56814098	Msa0079080:CDS
AATGCTCCATCTGATCTGTC+TGG	0.490201	1_2:+56815929	Msa0079080:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATGAAGCACAAATACTT+TGG	-	chr1_2:56812336-56812355	None:intergenic	30.0%
TTCTTGTTGATATCAGTTAG+AGG	+	chr1_2:56812706-56812725	Msa0079080:intron	30.0%
GGACTTAAATTTGTCATGTT+AGG	+	chr1_2:56812839-56812858	Msa0079080:intron	30.0%
CATGAAAAAGTTCAGATACA+TGG	+	chr1_2:56813399-56813418	Msa0079080:CDS	30.0%
AACGTCTATGAAAGAAAAAG+AGG	-	chr1_2:56813512-56813531	None:intergenic	30.0%
CGTAATTGATAAGTAGAAGT+TGG	-	chr1_2:56813784-56813803	None:intergenic	30.0%
ATATGAACCTTATTATGCTC+TGG	-	chr1_2:56813846-56813865	None:intergenic	30.0%
GTTGAAGGTAGAATATGATA+TGG	+	chr1_2:56813914-56813933	Msa0079080:CDS	30.0%
TGAAGGTAGAATATGATATG+GGG	+	chr1_2:56813916-56813935	Msa0079080:CDS	30.0%
GAAACCACAGAAAAAAATAG+AGG	+	chr1_2:56814037-56814056	Msa0079080:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	56811873	56816285	56811873	ID=Msa0079080;Name=Msa0079080
chr1_2	mRNA	56811873	56816285	56811873	ID=Msa0079080-mRNA-1;Parent=Msa0079080;Name=Msa0079080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.66\|0.75\|1\|1\|0.75\|4\|1452\|297
chr1_2	exon	56811873	56811878	56811873	ID=Msa0079080-mRNA-1:exon:17905;Parent=Msa0079080-mRNA-1
chr1_2	exon	56813282	56813458	56813282	ID=Msa0079080-mRNA-1:exon:17906;Parent=Msa0079080-mRNA-1
chr1_2	exon	56813831	56815391	56813831	ID=Msa0079080-mRNA-1:exon:17907;Parent=Msa0079080-mRNA-1
chr1_2	exon	56815684	56816285	56815684	ID=Msa0079080-mRNA-1:exon:17908;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56811873	56811878	56811873	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56813282	56813458	56813282	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56813831	56814541	56813831	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	three_prime_UTR	56814542	56815391	56814542	ID=Msa0079080-mRNA-1:three_prime_utr;Parent=Msa0079080-mRNA-1
chr1_2	three_prime_UTR	56815684	56816285	56815684	ID=Msa0079080-mRNA-1:three_prime_utr;Parent=Msa0079080-mRNA-1

Gene Sequence

>Msa0079080

ATGCTTTTTGTCAAGGATGGACTGCGATATATTGAAGAAAATAAGCTGAAGGTGGCTCTGATTAGCCCACCTGATTCACCAGAACTAGTTCCTGTTAATGGAGACTCAAAGAATGGATTTCATCATGAAAAAGTTCAGATACATGGCAAAGACGAAATTGAAATCCAGTCCCCTGAACCCATGGTTCTTAAAAAACCAGAGCATAATAAGGTTCATATACCAGAGCATACTAAGGTTCGTGATGCAGAGATTGAAGAGGATATGGAGTTGAAGGTAGAATATGATATGGGGTTGGATGCTATTAAGGATGTAGGAGAGCCAAGAGAAGAAGCAGGGTTGAAAGTGTCAAGAGTTGAGGAGATGAACTCAGTAAAGGGTGCGGAGGAACTGAAACCACAGAAAAAAATAGAGGTACAAGTCTCAAAAGATCTGGATTCAATCACAGTAAAGAATGCAGAGGAACTGAAACCAGGAAAAGAGGCAGAGATGAAGGTGTCAAAAGATCTGGGTTCAATTACAGTAAAGAAAGCAGAGGAACTGAAACCTGGAAAAGAAGCAGACTTGAATGTGTTAAAAGATCATTTGACCACAGTAAACAATGGAAAGGCACTGACGCCAGAAAAAGAAATAGAGTCAAAAGTGTCAACCGATACAGTGATTAAGACAGTAAAGAATGTTGAGGAACTGAAGCCAGAAAAAGAAGCGGAGTCAAGAGTTTCAAAGGGTATTGAGGAGCTGAAACTGCTGGAAGCCATTGAAGAGATGAAGTTAAAACTAGATGGACTTGAGTCAAAGCTAAATGAGGTCAGCATTCCACCATTCTATTGTGAATTTTTTTTTATCTGCTTGCTGTTACATGTGACATGCTTCCTAGCAAGTCGCAAGTTACTGTAA

Protein sequence

>Msa0079080

MLFVKDGLRYIEENKLKVALISPPDSPELVPVNGDSKNGFHHEKVQIHGKDEIEIQSPEPMVLKKPEHNKVHIPEHTKVRDAEIEEDMELKVEYDMGLDAIKDVGEPREEAGLKVSRVEEMNSVKGAEELKPQKKIEVQVSKDLDSITVKNAEELKPGKEAEMKVSKDLGSITVKKAEELKPGKEADLNVLKDHLTTVNNGKALTPEKEIESKVSTDTVIKTVKNVEELKPEKEAESRVSKGIEELKLLEAIEEMKLKLDGLESKLNEVSIPPFYCEFFFICLLLHVTCFLASRKLL*