AlfalfaGEDB | Msa0079080

M. sativa cultivar zhongmu-4 / Msa0079080

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0098827
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	KEH43062.1	97.037	270	8	0	2	271	37	306	4.52e-177	503

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	A0A072VMK2	97.037	270	8	0	2	271	37	306	2.16e-177	503

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0079080	0.829682	4.491164e-55	-8.615850e-47
Msa0017520	Msa0079080	0.861772	8.110612e-64	-8.615850e-47
Msa0020930	Msa0079080	0.811597	6.466924e-51	-8.615850e-47
Msa0079080	Msa0094120	0.807494	4.919049e-50	-8.615850e-47
Msa0079080	Msa0110970	0.816615	5.046413e-52	-8.615850e-47
Msa0079080	Msa0114060	0.804210	2.409951e-49	-8.615850e-47
Msa0079080	Msa0127660	0.951138	3.836847e-109	-8.615850e-47
Msa0079080	Msa0136070	0.826559	2.538444e-54	-8.615850e-47
Msa0079080	Msa0136100	0.804784	1.829727e-49	-8.615850e-47
Msa0079080	Msa0157290	0.829708	4.425099e-55	-8.615850e-47
Msa0079080	Msa0159930	0.804424	2.174494e-49	-8.615850e-47
Msa0079080	Msa0192510	0.830822	2.365106e-55	-8.615850e-47
Msa0079080	Msa0193470	0.826602	2.479559e-54	-8.615850e-47
Msa0079080	Msa0210450	0.808545	2.938083e-50	-8.615850e-47
Msa0079080	Msa0211150	0.821777	3.371270e-53	-8.615850e-47
Msa0079080	Msa0223690	0.804568	2.029803e-49	-8.615850e-47
Msa0079080	Msa0225740	0.809116	2.218364e-50	-8.615850e-47
Msa0079080	Msa0234430	0.842742	2.147755e-58	-8.615850e-47
Msa0079080	Msa0243100	0.811808	5.816225e-51	-8.615850e-47
Msa0079080	Msa0272720	0.821263	4.431163e-53	-8.615850e-47
Msa0079080	Msa0287650	0.823148	1.619089e-53	-8.615850e-47
Msa0079080	Msa0291540	0.801341	9.425001e-49	-8.615850e-47
Msa0079080	Msa0309770	0.804181	2.443643e-49	-8.615850e-47
Msa0079080	Msa0312160	0.801949	7.072946e-49	-8.615850e-47
Msa0079080	Msa0333720	-0.800245	1.577621e-48	-8.615850e-47
Msa0079080	Msa0334350	0.816750	4.707424e-52	-8.615850e-47
Msa0079080	Msa0345970	0.842480	2.520783e-58	-8.615850e-47
Msa0079080	Msa0351110	0.802274	6.065197e-49	-8.615850e-47
Msa0079080	Msa0363070	0.803569	3.273903e-49	-8.615850e-47
Msa0079080	Msa0389340	0.814963	1.178787e-51	-8.615850e-47
Msa0079080	Msa0414170	0.800565	1.357833e-48	-8.615850e-47
Msa0079080	Msa0417270	0.815893	7.321644e-52	-8.615850e-47
Msa0079080	Msa0437560	0.813645	2.305350e-51	-8.615850e-47
Msa0079080	Msa0440750	0.830411	2.982481e-55	-8.615850e-47
Msa0079080	Msa0469030	0.807763	4.312454e-50	-8.615850e-47
Msa0079080	Msa0500360	0.806722	7.166933e-50	-8.615850e-47
Msa0079080	Msa0502880	0.809497	1.838034e-50	-8.615850e-47
Msa0079080	Msa0507680	0.815733	7.948336e-52	-8.615850e-47
Msa0079080	Msa0515010	0.800831	1.198482e-48	-8.615850e-47
Msa0079080	Msa0516320	0.806137	9.519922e-50	-8.615850e-47
Msa0079080	Msa0532060	0.805241	1.467727e-49	-8.615850e-47
Msa0079080	Msa0584860	0.806772	6.994617e-50	-8.615850e-47
Msa0079080	Msa0585300	0.803781	2.959769e-49	-8.615850e-47
Msa0079080	Msa0593650	0.809220	2.106881e-50	-8.615850e-47
Msa0079080	Msa0596800	0.804822	1.796245e-49	-8.615850e-47
Msa0079080	Msa0606730	0.802919	4.464152e-49	-8.615850e-47
Msa0079080	Msa0616160	0.824747	6.827939e-54	-8.615850e-47
Msa0079080	Msa0621490	0.816616	5.046241e-52	-8.615850e-47
Msa0079080	Msa0643180	0.812505	4.099697e-51	-8.615850e-47
Msa0079080	Msa0643560	0.801681	8.029006e-49	-8.615850e-47
Msa0079080	Msa0661190	-0.838874	2.218878e-57	-8.615850e-47
Msa0079080	Msa0669320	0.803767	2.979648e-49	-8.615850e-47
Msa0079080	Msa0682840	0.801720	7.881864e-49	-8.615850e-47
Msa0079080	Msa0691380	0.817351	3.449665e-52	-8.615850e-47
Msa0079080	Msa0692230	0.804553	2.043675e-49	-8.615850e-47
Msa0079080	Msa0725250	0.820550	6.465123e-53	-8.615850e-47
Msa0079080	Msa0760380	0.811549	6.621434e-51	-8.615850e-47
Msa0079080	Msa0769920	0.814125	1.806156e-51	-8.615850e-47
Msa0079080	Msa0796530	0.810251	1.264864e-50	-8.615850e-47
Msa0079080	Msa0796700	0.816290	5.969563e-52	-8.615850e-47
Msa0079080	Msa0808270	0.808823	2.562691e-50	-8.615850e-47
Msa0079080	Msa0844240	0.811751	5.986608e-51	-8.615850e-47
Msa0079080	Msa0845400	0.826643	2.423925e-54	-8.615850e-47
Msa0079080	Msa0862110	0.801976	6.984342e-49	-8.615850e-47
Msa0079080	Msa0878500	0.819742	9.898007e-53	-8.615850e-47
Msa0079080	Msa0880140	0.828966	6.698941e-55	-8.615850e-47
Msa0079080	Msa0938220	0.803979	2.691432e-49	-8.615850e-47
Msa0079080	Msa0944190	0.838511	2.753900e-57	-8.615850e-47
Msa0079080	Msa0945970	0.825542	4.430071e-54	-8.615850e-47
Msa0079080	Msa0969520	0.806735	7.121510e-50	-8.615850e-47
Msa0079080	Msa0993290	0.804396	2.204291e-49	-8.615850e-47
Msa0079080	Msa0993600	0.801148	1.032499e-48	-8.615850e-47
Msa0079080	Msa1023400	0.831369	1.735520e-55	-8.615850e-47
Msa0079080	Msa1075220	-0.803867	2.839548e-49	-8.615850e-47
Msa0079080	Msa1082500	0.805097	1.573246e-49	-8.615850e-47
Msa0079080	Msa1085200	0.804196	2.426007e-49	-8.615850e-47
Msa0079080	Msa1116130	-0.813393	2.619110e-51	-8.615850e-47
Msa0079080	Msa1120530	0.812110	4.998228e-51	-8.615850e-47
Msa0079080	Msa1130550	0.803986	2.683151e-49	-8.615850e-47
Msa0079080	Msa1139000	-0.802559	5.297710e-49	-8.615850e-47
Msa0079080	Msa1140210	0.802788	4.751041e-49	-8.615850e-47
Msa0079080	Msa1151910	0.800687	1.282134e-48	-8.615850e-47
Msa0079080	Msa1203250	0.807139	5.847531e-50	-8.615850e-47
Msa0079080	Msa1204090	0.804721	1.885419e-49	-8.615850e-47
Msa0079080	Msa1209460	0.814529	1.470976e-51	-8.615850e-47
Msa0079080	Msa1242240	0.812286	4.576836e-51	-8.615850e-47
Msa0079080	Msa1256250	0.822831	1.919250e-53	-8.615850e-47
Msa0079080	Msa1264020	0.800539	1.374194e-48	-8.615850e-47
Msa0079080	Msa1267600	0.821545	3.814174e-53	-8.615850e-47
Msa0079080	Msa1272900	0.813364	2.656852e-51	-8.615850e-47
Msa0079080	Msa1283840	0.817360	3.433580e-52	-8.615850e-47
Msa0079080	Msa1284260	0.836026	1.190583e-56	-8.615850e-47
Msa0079080	Msa1305800	0.847074	1.455191e-59	-8.615850e-47
Msa0079080	Msa1322860	0.814073	1.854587e-51	-8.615850e-47
Msa0079080	Msa1327050	0.836216	1.065884e-56	-8.615850e-47
Msa0079080	Msa1332040	-0.807448	5.030160e-50	-8.615850e-47
Msa0079080	Msa1341520	0.804060	2.589366e-49	-8.615850e-47
Msa0079080	Msa1353980	0.804874	1.752172e-49	-8.615850e-47
Msa0079080	Msa1384350	0.817551	3.110608e-52	-8.615850e-47
Msa0079080	Msa1415640	0.801026	1.093462e-48	-8.615850e-47
Msa0079080	Msa1445610	-0.815025	1.142080e-51	-8.615850e-47
Msa0079080	Msa1452240	0.810458	1.141445e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079080	MtrunA17_Chr1g0191261	97.037	270	8	0	2	271	107	376	2.42e-180	504

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 129 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTCCTAACCTTATTAAAA+TGG	0.144741	1_2:+56815202	Msa0079080:three_prime_UTR
CCAGAACTAGTTCCTGTTAA+TGG	0.166308	1_2:+56813354	Msa0079080:CDS
CTGCCACCTTGTCAAGATTT+TGG	0.169575	1_2:+56814549	Msa0079080:three_prime_UTR
GGCACTTATCTGTGTCTTCT+TGG	0.212884	1_2:+56815752	Msa0079080:three_prime_UTR
CGATACTTTGTATATAATAT+TGG	0.236274	1_2:+56815157	Msa0079080:three_prime_UTR
CCGTTTACACTCTTGATATC+TGG	0.242302	1_2:+56815779	Msa0079080:three_prime_UTR
GCTTGCTGCAAATAACTATT+AGG	0.264426	1_2:+56814653	Msa0079080:three_prime_UTR
ATACAAACGCAACGTGATTA+TGG	0.266988	1_2:-56815953	None:intergenic
GCAAGATAGTGAAATATAAT+TGG	0.268359	1_2:-56814769	None:intergenic
TGCCTCAAGTTTGTTATATT+AGG	0.272978	1_2:+56815839	Msa0079080:three_prime_UTR
TTCAACCCTGCTTCTTCTCT+TGG	0.273735	1_2:-56813966	None:intergenic
TTCTTTGAGTCTCCATTAAC+AGG	0.295800	1_2:-56813366	None:intergenic
GTTGAAGGTAGAATATGATA+TGG	0.309168	1_2:+56813914	Msa0079080:CDS
TGCAGAGATTGAAGAGGATA+TGG	0.310428	1_2:+56813890	Msa0079080:CDS
TATGGGGTTGGATGCTATTA+AGG	0.319281	1_2:+56813932	Msa0079080:CDS
GTTTGTTATATTAGGAGTTT+AGG	0.320753	1_2:+56815847	Msa0079080:three_prime_UTR
TCAAAATGTTAGTATCTTCC+TGG	0.337913	1_2:-56815814	None:intergenic
TTTCGTCTAACCATGGGTTC+AGG	0.347161	1_2:-56813447	None:intergenic
CCTCCTCTCCTCTGTTAACT+TGG	0.348926	1_2:-56815330	None:intergenic
TTTCCTAACCTTATTAAAAT+GGG	0.349263	1_2:+56815203	Msa0079080:three_prime_UTR
AGGGGAAAGTGGTGTATATA+AGG	0.357111	1_2:-56814925	None:intergenic
CCATTAACAGGAACTAGTTC+TGG	0.359456	1_2:-56813354	None:intergenic
GCACTTATCTGTGTCTTCTT+GGG	0.372916	1_2:+56815753	Msa0079080:three_prime_UTR
TTGAGATTTGAGATGTTAGT+TGG	0.374216	1_2:+56814620	Msa0079080:three_prime_UTR
TGAAGAGGATATGGAGTTGA+AGG	0.374389	1_2:+56813899	Msa0079080:CDS
CACATAGGATTGAGCCTGTA+TGG	0.375175	1_2:-56815123	None:intergenic
GATGAAGGTGTCAAAAGATC+TGG	0.376784	1_2:+56814133	Msa0079080:CDS
CAAATGCCATAGTTCCAAAA+AGG	0.385651	1_2:-56816270	None:intergenic
TGATGAGATTAGTGGAAAAC+TGG	0.389046	1_2:+56816040	Msa0079080:three_prime_UTR
ATTGAGCCTGTATGGATGTT+AGG	0.390986	1_2:-56815115	None:intergenic
GGAACTAGTTCTGGTGAATC+AGG	0.392780	1_2:-56813345	None:intergenic
TAACCATGGGTTCAGGGGAC+TGG	0.399998	1_2:-56813440	None:intergenic
TTGAAGGTAGAATATGATAT+GGG	0.407459	1_2:+56813915	Msa0079080:CDS
CGTTTACACTCTTGATATCT+GGG	0.413556	1_2:+56815780	Msa0079080:three_prime_UTR
ATATGAACCTTATTATGCTC+TGG	0.416859	1_2:-56813843	None:intergenic
GAGATGAAGTTAAAACTAGA+TGG	0.426084	1_2:+56814407	Msa0079080:CDS
CCAGATATCAAGAGTGTAAA+CGG	0.442402	1_2:-56815779	None:intergenic
CAGGCAGATCTCATTAATAC+AGG	0.447142	1_2:+56815681	Msa0079080:intron
AAGTTCATTCATAGTTCGTC+AGG	0.448784	1_2:-56816241	None:intergenic
GGTACAAGTCTCAAAAGATC+TGG	0.453038	1_2:+56814058	Msa0079080:CDS
TAATCGAAGTTTGTCAAGGA+TGG	0.457053	1_2:+56813273	Msa0079080:intron
AGCGGAGTCAAGAGTTTCAA+AGG	0.463926	1_2:+56814349	Msa0079080:CDS
TGATGAAGCAATTGAGCATA+TGG	0.464813	1_2:+56815180	Msa0079080:three_prime_UTR
AAGAGTTTCAAAGGGTATTG+AGG	0.466356	1_2:+56814358	Msa0079080:CDS
GCAGAATTTCTCACTTGTAA+AGG	0.477676	1_2:+56815978	Msa0079080:three_prime_UTR
TTATTTGCAGCAAGCGGTGA+AGG	0.485372	1_2:-56814645	None:intergenic
TTCGTCTAACCATGGGTTCA+GGG	0.488202	1_2:-56813446	None:intergenic
TATATTTCACTATCTTGCTA+TGG	0.488375	1_2:+56814774	Msa0079080:three_prime_UTR
GTTAATGGAGACTCAAAGAA+TGG	0.489508	1_2:+56813369	Msa0079080:CDS
ATTGAAAACATATGACCAAA+AGG	0.489902	1_2:-56814596	None:intergenic
AATGCTCCATCTGATCTGTC+TGG	0.490201	1_2:+56815929	Msa0079080:three_prime_UTR
TACTGTCTTAATCACTGTAT+CGG	0.494218	1_2:-56814294	None:intergenic
GGAACTGAAACCAGGAAAAG+AGG	0.496214	1_2:+56814106	Msa0079080:CDS
TGAGGAGATGAACTCAGTAA+AGG	0.496472	1_2:+56814001	Msa0079080:CDS
GAGGAGATGAACTCAGTAAA+GGG	0.496692	1_2:+56814002	Msa0079080:CDS
AGGAAAAGAGGCAGAGATGA+AGG	0.499789	1_2:+56814118	Msa0079080:CDS
GTCCAAGAAAAGTTCAAGTC+GGG	0.504636	1_2:+56815703	Msa0079080:three_prime_UTR
CAATTGAGTTCACAGGGAAA+AGG	0.509750	1_2:-56816095	None:intergenic
TACTAATCAATTGAGTTCAC+AGG	0.522756	1_2:-56816102	None:intergenic
AAAGCAGAGGAACTGAAACC+TGG	0.523769	1_2:+56814173	Msa0079080:CDS
GGAGAGCCAAGAGAAGAAGC+AGG	0.526638	1_2:+56813960	Msa0079080:CDS
TGCCTTTCCATTGTTTACTG+TGG	0.527555	1_2:-56814234	None:intergenic
ACAGTAACTTGCGACTTGCT+AGG	0.530256	1_2:-56814517	None:intergenic
CGAACTATGAATGAACTTGA+GGG	0.530541	1_2:+56816246	Msa0079080:three_prime_UTR
TAGAGATTAGCATGAAAGTC+GGG	0.531474	1_2:-56815247	None:intergenic
TTGGATGCTATTAAGGATGT+AGG	0.531555	1_2:+56813939	Msa0079080:CDS
AAATGAAAACAAGGGGAAAG+TGG	0.541657	1_2:-56814936	None:intergenic
TCACGAACCTTAGTATGCTC+TGG	0.541662	1_2:-56813867	None:intergenic
CCCACTTCTATATGTCTGCA+TGG	0.542803	1_2:+56815728	Msa0079080:three_prime_UTR
CTAACCTTATTAAAATGGGG+TGG	0.544581	1_2:+56815207	Msa0079080:three_prime_UTR
TATTTGCAGCAAGCGGTGAA+GGG	0.549143	1_2:-56814644	None:intergenic
ATGAAGGTGTCAAAAGATCT+GGG	0.554191	1_2:+56814134	Msa0079080:CDS
TCATATACCAGAGCATACTA+AGG	0.554759	1_2:+56813860	Msa0079080:CDS
TTCCTAACCTTATTAAAATG+GGG	0.556230	1_2:+56815204	Msa0079080:three_prime_UTR
TATTGAGGAGCTGAAACTGC+TGG	0.560970	1_2:+56814373	Msa0079080:CDS
AGTACAAGGTATATAGCGGT+CGG	0.562262	1_2:+56816008	Msa0079080:three_prime_UTR
GTACAAGGTATATAGCGGTC+GGG	0.562608	1_2:+56816009	Msa0079080:three_prime_UTR
TTTATAATCGAAGTTTGTCA+AGG	0.566542	1_2:+56813269	Msa0079080:intron
AAAGCTCCTAACATCCATAC+AGG	0.567411	1_2:+56815109	Msa0079080:three_prime_UTR
GGTAGAATATGATATGGGGT+TGG	0.570375	1_2:+56813920	Msa0079080:CDS
ACGAACTATGAATGAACTTG+AGG	0.570667	1_2:+56816245	Msa0079080:three_prime_UTR
GCGGAGTCAAGAGTTTCAAA+GGG	0.572722	1_2:+56814350	Msa0079080:CDS
TAGATGACTGATGAGATTAG+TGG	0.575372	1_2:+56816032	Msa0079080:three_prime_UTR
TATGGACCAGACAGATCAGA+TGG	0.577642	1_2:-56815935	None:intergenic
GTTGAAAGTGTCAAGAGTTG+AGG	0.580023	1_2:+56813983	Msa0079080:CDS
AATTTAATCAAATGAAAACA+AGG	0.581727	1_2:-56814945	None:intergenic
AATCCAGTCCCCTGAACCCA+TGG	0.582271	1_2:+56813437	Msa0079080:CDS
ATTTAATCAAATGAAAACAA+GGG	0.588911	1_2:-56814944	None:intergenic
TAATAGTTATTTGCAGCAAG+CGG	0.592267	1_2:-56814651	None:intergenic
GTAGAGATTAGCATGAAAGT+CGG	0.592962	1_2:-56815248	None:intergenic
CCAAGTTAACAGAGGAGAGG+AGG	0.593009	1_2:+56815330	Msa0079080:three_prime_UTR
ATATAAGTTTGAATTAGAGA+AGG	0.594130	1_2:+56815012	Msa0079080:three_prime_UTR
ATTCTTTGCTGGCTCCTCTG+TGG	0.598825	1_2:-56815035	None:intergenic
AATGCAGAGGAACTGAAACC+AGG	0.603182	1_2:+56814098	Msa0079080:CDS
TTAATTATACTTTCAATGCG+TGG	0.605126	1_2:+56814846	Msa0079080:three_prime_UTR
ACTAGTTCTGGTGAATCAGG+TGG	0.606820	1_2:-56813342	None:intergenic
TATTGAAGAAAATAAGCTGA+AGG	0.613728	1_2:+56813305	Msa0079080:CDS
GGTCCAAGAAAAGTTCAAGT+CGG	0.614155	1_2:+56815702	Msa0079080:three_prime_UTR
GAGGAGGTTAAGCAATCAAG+AGG	0.616339	1_2:+56815346	Msa0079080:three_prime_UTR
TCGTCTAACCATGGGTTCAG+GGG	0.618454	1_2:-56813445	None:intergenic
CTCCTAATATAACAAACTTG+AGG	0.620387	1_2:-56815841	None:intergenic
ACTTGAGTCAAAGCTAAATG+AGG	0.624176	1_2:+56814430	Msa0079080:CDS
GACCACAGTAAACAATGGAA+AGG	0.626884	1_2:+56814232	Msa0079080:CDS
TTTAATCAAATGAAAACAAG+GGG	0.626903	1_2:-56814943	None:intergenic
TCGTGATGCAGAGATTGAAG+AGG	0.628341	1_2:+56813884	Msa0079080:CDS
ACCATGCAGACATATAGAAG+TGG	0.631855	1_2:-56815729	None:intergenic
GTTTACACTCTTGATATCTG+GGG	0.632135	1_2:+56815781	Msa0079080:three_prime_UTR
GATGAACTCAGTAAAGGGTG+CGG	0.632166	1_2:+56814007	Msa0079080:CDS
GAGAGCCAAGAGAAGAAGCA+GGG	0.633793	1_2:+56813961	Msa0079080:CDS
TAAGACAGTAAAGAATGTTG+AGG	0.634008	1_2:+56814307	Msa0079080:CDS
TGAAGGTAGAATATGATATG+GGG	0.634862	1_2:+56813916	Msa0079080:CDS
AACAATATCCAAGTTAACAG+AGG	0.640525	1_2:+56815322	Msa0079080:three_prime_UTR
ACTAATCAATTGAGTTCACA+GGG	0.640770	1_2:-56816101	None:intergenic
TGAAGAAAATAAGCTGAAGG+TGG	0.641027	1_2:+56813308	Msa0079080:CDS
TTTACACTCTTGATATCTGG+GGG	0.641415	1_2:+56815782	Msa0079080:three_prime_UTR
CCATGCAGACATATAGAAGT+GGG	0.643537	1_2:-56815728	None:intergenic
GAACTCAGTAAAGGGTGCGG+AGG	0.643899	1_2:+56814010	Msa0079080:CDS
CTAGTTCTGGTGAATCAGGT+GGG	0.646582	1_2:-56813341	None:intergenic
CATTTGACCACAGTAAACAA+TGG	0.650155	1_2:+56814227	Msa0079080:CDS
TATCCAAGTTAACAGAGGAG+AGG	0.652511	1_2:+56815327	Msa0079080:three_prime_UTR
TGAATTAGAGAAGGCCACAG+AGG	0.653557	1_2:+56815021	Msa0079080:three_prime_UTR
GTAAAGGTACAGATAGTACA+AGG	0.666698	1_2:+56815994	Msa0079080:three_prime_UTR
TAACCAAAATCTTGACAAGG+TGG	0.668289	1_2:-56814552	None:intergenic
ACTTCTATATGTCTGCATGG+TGG	0.671243	1_2:+56815731	Msa0079080:three_prime_UTR
ATTGTTACTCCAGACTACAA+AGG	0.682862	1_2:-56815305	None:intergenic
AGATAGTACAAGGTATATAG+CGG	0.684320	1_2:+56816004	Msa0079080:three_prime_UTR
TAATAACCAAAATCTTGACA+AGG	0.687571	1_2:-56814555	None:intergenic
AATCACAGTAAAGAATGCAG+AGG	0.689548	1_2:+56814085	Msa0079080:CDS
AATTACAGTAAAGAAAGCAG+AGG	0.696501	1_2:+56814160	Msa0079080:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAATTTTTTAAATTATA+TGG	+	chr1_2:56814871-56814890	Msa0079080:three_prime_UTR	0.0%
!!!	TTATTTTCTTACATTATTAT+CGG	-	chr1_2:56812249-56812268	None:intergenic	10.0%
!!	GTTAATATTCAAAAAACTTA+TGG	-	chr1_2:56812940-56812959	None:intergenic	15.0%
!!	AAAAACAGAAATAAAATTAG+GGG	-	chr1_2:56813021-56813040	None:intergenic	15.0%
!!	GAAAAACAGAAATAAAATTA+GGG	-	chr1_2:56813022-56813041	None:intergenic	15.0%
!!	AGAAAAACAGAAATAAAATT+AGG	-	chr1_2:56813023-56813042	None:intergenic	15.0%
!!!	CTTATTATATATTTTGTATC+TGG	+	chr1_2:56813197-56813216	Msa0079080:intron	15.0%
!!	AAAAAAAATTCACAATAGAA+TGG	-	chr1_2:56814467-56814486	None:intergenic	15.0%
!!!	AAAAACTTGTTTAAATTAGT+AGG	+	chr1_2:56814687-56814706	Msa0079080:three_prime_UTR	15.0%
!!	ATTTAATCAAATGAAAACAA+GGG	-	chr1_2:56814947-56814966	None:intergenic	15.0%
!!	AATTTAATCAAATGAAAACA+AGG	-	chr1_2:56814948-56814967	None:intergenic	15.0%
!!!	AAATGAAAACTAAATTTTAC+AGG	-	chr1_2:56815629-56815648	None:intergenic	15.0%
!!	ATAAGTTGTTTATTCAAACA+AGG	+	chr1_2:56812675-56812694	Msa0079080:intron	20.0%
!!!	ATTTTTGGATATTCATTGAA+TGG	+	chr1_2:56812818-56812837	Msa0079080:intron	20.0%
!!!	AATTATCTTTCTAAAGGATT+TGG	-	chr1_2:56813535-56813554	None:intergenic	20.0%
!!!	AAATCCTTTAGAAAGATAAT+TGG	+	chr1_2:56813534-56813553	Msa0079080:intron	20.0%
!!	CAAATTTCAAGAACATTATA+TGG	-	chr1_2:56813807-56813826	None:intergenic	20.0%
!!	TTTAATCAAATGAAAACAAG+GGG	-	chr1_2:56814946-56814965	None:intergenic	20.0%
!!	ATATAAGTTTGAATTAGAGA+AGG	+	chr1_2:56815012-56815031	Msa0079080:three_prime_UTR	20.0%
!!	CGATACTTTGTATATAATAT+TGG	+	chr1_2:56815157-56815176	Msa0079080:three_prime_UTR	20.0%
!!	TTTCCTAACCTTATTAAAAT+GGG	+	chr1_2:56815203-56815222	Msa0079080:three_prime_UTR	20.0%
!!!	AGTAAATAGTAATGTTTTTG+TGG	+	chr1_2:56815422-56815441	Msa0079080:intron	20.0%
!!!	GTAAATAGTAATGTTTTTGT+GGG	+	chr1_2:56815423-56815442	Msa0079080:intron	20.0%
!!	TAAATTTACATGAAAAAGTG+CGG	-	chr1_2:56815577-56815596	None:intergenic	20.0%
!!!	AAATTTTACAGGCTTAATAA+GGG	-	chr1_2:56815618-56815637	None:intergenic	20.0%
!!!	TAAATTTTACAGGCTTAATA+AGG	-	chr1_2:56815619-56815638	None:intergenic	20.0%
!	AATTACAGCACATTAATCAA+TGG	-	chr1_2:56811905-56811924	None:intergenic	25.0%
!!	ATCGCATTTCTTTCAATTTT+TGG	+	chr1_2:56812015-56812034	Msa0079080:intron	25.0%
!!!	AATCGTTTTTGTATGTTTTC+AGG	+	chr1_2:56812068-56812087	Msa0079080:intron	25.0%
!!	TTGAAATTTTCAATCAGACT+TGG	+	chr1_2:56812419-56812438	Msa0079080:intron	25.0%
!!	TGAAATTTTCAATCAGACTT+GGG	+	chr1_2:56812420-56812439	Msa0079080:intron	25.0%
!!!	TTGTTTTTCGTAAGTTATCT+TGG	-	chr1_2:56812558-56812577	None:intergenic	25.0%
!	TGATATCAACAAGAACAATA+AGG	-	chr1_2:56812701-56812720	None:intergenic	25.0%
!	TTAAAACTCTATTGAGAGTA+AGG	+	chr1_2:56812775-56812794	Msa0079080:intron	25.0%
!	GACTTAAATTTGTCATGTTA+GGG	+	chr1_2:56812840-56812859	Msa0079080:intron	25.0%
!	ACTTAAATTTGTCATGTTAG+GGG	+	chr1_2:56812841-56812860	Msa0079080:intron	25.0%
!	TTTATAATCGAAGTTTGTCA+AGG	+	chr1_2:56813269-56813288	Msa0079080:intron	25.0%
!	TATTGAAGAAAATAAGCTGA+AGG	+	chr1_2:56813305-56813324	Msa0079080:CDS	25.0%
!	ACTTCCAATTATCTTTCTAA+AGG	-	chr1_2:56813541-56813560	None:intergenic	25.0%
!	ATTTGAAAATTACCTTGCTA+TGG	+	chr1_2:56813619-56813638	Msa0079080:intron	25.0%
!	ATAATCCAACATATACACAA+AGG	-	chr1_2:56813754-56813773	None:intergenic	25.0%
!	GTAATTGATAAGTAGAAGTT+GGG	-	chr1_2:56813783-56813802	None:intergenic	25.0%
!	TAATGTTCTTGAAATTTGTC+AGG	+	chr1_2:56813809-56813828	Msa0079080:intron	25.0%
!	TAAAAAACCAGAGCATAATA+AGG	+	chr1_2:56813836-56813855	Msa0079080:CDS	25.0%
!	TTGAAGGTAGAATATGATAT+GGG	+	chr1_2:56813915-56813934	Msa0079080:CDS	25.0%
!!!	TTTGACTCTATTTCTTTTTC+TGG	-	chr1_2:56814266-56814285	None:intergenic	25.0%
!!!	TTTTAACTTCATCTCTTCAA+TGG	-	chr1_2:56814402-56814421	None:intergenic	25.0%
!	AAAAATTCACAATAGAATGG+TGG	-	chr1_2:56814464-56814483	None:intergenic	25.0%
!	TAATAACCAAAATCTTGACA+AGG	-	chr1_2:56814558-56814577	None:intergenic	25.0%
!	ATTGAAAACATATGACCAAA+AGG	-	chr1_2:56814599-56814618	None:intergenic	25.0%
!	GCAAGATAGTGAAATATAAT+TGG	-	chr1_2:56814772-56814791	None:intergenic	25.0%
!	TATATTTCACTATCTTGCTA+TGG	+	chr1_2:56814774-56814793	Msa0079080:three_prime_UTR	25.0%
!	TTAATTATACTTTCAATGCG+TGG	+	chr1_2:56814846-56814865	Msa0079080:three_prime_UTR	25.0%
!!	AAGAATCTTTTTGGATGTAT+AGG	+	chr1_2:56815052-56815071	Msa0079080:three_prime_UTR	25.0%
!!	AGAATCTTTTTGGATGTATA+GGG	+	chr1_2:56815053-56815072	Msa0079080:three_prime_UTR	25.0%
!!	ATCGATAAACATTTTCACAT+AGG	-	chr1_2:56815141-56815160	None:intergenic	25.0%
!	GTTTCCTAACCTTATTAAAA+TGG	+	chr1_2:56815202-56815221	Msa0079080:three_prime_UTR	25.0%
!	TTCCTAACCTTATTAAAATG+GGG	+	chr1_2:56815204-56815223	Msa0079080:three_prime_UTR	25.0%
!	TAAGTTCATTTCAACATATG+CGG	-	chr1_2:56815550-56815569	None:intergenic	25.0%
!	ATGTAAATTTAGTCCTCTTT+AGG	+	chr1_2:56815586-56815605	Msa0079080:intron	25.0%
!	TGTAAATTTAGTCCTCTTTA+GGG	+	chr1_2:56815587-56815606	Msa0079080:intron	25.0%
!!	AATTTTACAGGCTTAATAAG+GGG	-	chr1_2:56815617-56815636	None:intergenic	25.0%
!!!	GTTTTCATTTTAGAAACTCA+AGG	+	chr1_2:56815639-56815658	Msa0079080:intron	25.0%
!!!	GTTTGTTATATTAGGAGTTT+AGG	+	chr1_2:56815847-56815866	Msa0079080:three_prime_UTR	25.0%
	ACTATGAAGCACAAATACTT+TGG	-	chr1_2:56812336-56812355	None:intergenic	30.0%
!	GAAATTTTCAATCAGACTTG+GGG	+	chr1_2:56812421-56812440	Msa0079080:intron	30.0%
!!!	ACTGGCATAAGTTTTTTAGA+CGG	+	chr1_2:56812461-56812480	Msa0079080:intron	30.0%
	TTCTTGTTGATATCAGTTAG+AGG	+	chr1_2:56812706-56812725	Msa0079080:intron	30.0%
	GGACTTAAATTTGTCATGTT+AGG	+	chr1_2:56812839-56812858	Msa0079080:intron	30.0%
	CATGAAAAAGTTCAGATACA+TGG	+	chr1_2:56813399-56813418	Msa0079080:CDS	30.0%
	AACGTCTATGAAAGAAAAAG+AGG	-	chr1_2:56813512-56813531	None:intergenic	30.0%
	CGTAATTGATAAGTAGAAGT+TGG	-	chr1_2:56813784-56813803	None:intergenic	30.0%
	ATATGAACCTTATTATGCTC+TGG	-	chr1_2:56813846-56813865	None:intergenic	30.0%
	GTTGAAGGTAGAATATGATA+TGG	+	chr1_2:56813914-56813933	Msa0079080:CDS	30.0%
	TGAAGGTAGAATATGATATG+GGG	+	chr1_2:56813916-56813935	Msa0079080:CDS	30.0%
	GAAACCACAGAAAAAAATAG+AGG	+	chr1_2:56814037-56814056	Msa0079080:CDS	30.0%
!!!	TGTACCTCTATTTTTTTCTG+TGG	-	chr1_2:56814044-56814063	None:intergenic	30.0%
	AATTACAGTAAAGAAAGCAG+AGG	+	chr1_2:56814160-56814179	Msa0079080:CDS	30.0%
	TACTGTCTTAATCACTGTAT+CGG	-	chr1_2:56814297-56814316	None:intergenic	30.0%
	TAAGACAGTAAAGAATGTTG+AGG	+	chr1_2:56814307-56814326	Msa0079080:CDS	30.0%
	GAGATGAAGTTAAAACTAGA+TGG	+	chr1_2:56814407-56814426	Msa0079080:CDS	30.0%
!	TTGAGATTTGAGATGTTAGT+TGG	+	chr1_2:56814620-56814639	Msa0079080:three_prime_UTR	30.0%
	TAATAGTTATTTGCAGCAAG+CGG	-	chr1_2:56814654-56814673	None:intergenic	30.0%
!	GAATCTTTTTGGATGTATAG+GGG	+	chr1_2:56815054-56815073	Msa0079080:three_prime_UTR	30.0%
	AACAATATCCAAGTTAACAG+AGG	+	chr1_2:56815322-56815341	Msa0079080:three_prime_UTR	30.0%
	ACTTAAAAATTCCTCCAAAC+TGG	-	chr1_2:56815476-56815495	None:intergenic	30.0%
!!!	GAATTTTTAAGTGCACTTGT+AGG	+	chr1_2:56815484-56815503	Msa0079080:intron	30.0%
	TCAAAATGTTAGTATCTTCC+TGG	-	chr1_2:56815817-56815836	None:intergenic	30.0%
!!	TGCCTCAAGTTTGTTATATT+AGG	+	chr1_2:56815839-56815858	Msa0079080:three_prime_UTR	30.0%
	CTCCTAATATAACAAACTTG+AGG	-	chr1_2:56815844-56815863	None:intergenic	30.0%
!	CAGTGATTTTTCTATACTTG+AGG	+	chr1_2:56815901-56815920	Msa0079080:three_prime_UTR	30.0%
	AGATAGTACAAGGTATATAG+CGG	+	chr1_2:56816004-56816023	Msa0079080:three_prime_UTR	30.0%
	ACTAATCAATTGAGTTCACA+GGG	-	chr1_2:56816104-56816123	None:intergenic	30.0%
	TACTAATCAATTGAGTTCAC+AGG	-	chr1_2:56816105-56816124	None:intergenic	30.0%
!!!	TTAGTAGTTTTGTTGAGTTG+TGG	+	chr1_2:56816119-56816138	Msa0079080:three_prime_UTR	30.0%
!!	CAAGTGCAACTATTTTTCAA+AGG	-	chr1_2:56816219-56816238	None:intergenic	30.0%
	GAAGAAACAAAGTTCGTGTA+CGG	+	chr1_2:56811946-56811965	Msa0079080:intron	35.0%
	ATTCTCAACACAACTACTCT+AGG	-	chr1_2:56812041-56812060	None:intergenic	35.0%
	GGTCGAACTGAATATTTCTT+AGG	-	chr1_2:56812108-56812127	None:intergenic	35.0%
	TATTCAGTTCGACCAAATGT+TGG	+	chr1_2:56812114-56812133	Msa0079080:intron	35.0%
	ACTTTGGATTAAGCGTAACA+AGG	-	chr1_2:56812320-56812339	None:intergenic	35.0%
!	GCTTGTTTGAGTTTATCTAC+TGG	+	chr1_2:56812443-56812462	Msa0079080:intron	35.0%
	TTCAATTGCATCAACGATCA+AGG	-	chr1_2:56812743-56812762	None:intergenic	35.0%
!	TCGTTGTGGTGGTTAATTTT+TGG	+	chr1_2:56812803-56812822	Msa0079080:intron	35.0%
	TCAAAAAACTTATGGCTGCA+AGG	-	chr1_2:56812932-56812951	None:intergenic	35.0%
	TAATCGAAGTTTGTCAAGGA+TGG	+	chr1_2:56813273-56813292	Msa0079080:intron	35.0%
	TGAAGAAAATAAGCTGAAGG+TGG	+	chr1_2:56813308-56813327	Msa0079080:CDS	35.0%
	TTCTTTGAGTCTCCATTAAC+AGG	-	chr1_2:56813369-56813388	None:intergenic	35.0%
	GTTAATGGAGACTCAAAGAA+TGG	+	chr1_2:56813369-56813388	Msa0079080:CDS	35.0%
	ATGAAGTTTCGTCTAACCAT+GGG	-	chr1_2:56813456-56813475	None:intergenic	35.0%
	AGACGAAACTTCATGATGTT+TGG	+	chr1_2:56813462-56813481	Msa0079080:intron	35.0%
	GTCTATGAAAGAAAAAGAGG+CGG	-	chr1_2:56813509-56813528	None:intergenic	35.0%
!	TGAATTTTCTTTAGTCCCCT+GGG	+	chr1_2:56813662-56813681	Msa0079080:intron	35.0%
	TTCAAAGAATTTCATCCCAG+GGG	-	chr1_2:56813680-56813699	None:intergenic	35.0%
	GTTCAAAGAATTTCATCCCA+GGG	-	chr1_2:56813681-56813700	None:intergenic	35.0%
	TGTTGCCTTTGTGTATATGT+TGG	+	chr1_2:56813746-56813765	Msa0079080:intron	35.0%
	TCATATACCAGAGCATACTA+AGG	+	chr1_2:56813860-56813879	Msa0079080:CDS	35.0%
	TTGGATGCTATTAAGGATGT+AGG	+	chr1_2:56813939-56813958	Msa0079080:CDS	35.0%
	AATCACAGTAAAGAATGCAG+AGG	+	chr1_2:56814085-56814104	Msa0079080:CDS	35.0%
!!	ATGAAGGTGTCAAAAGATCT+GGG	+	chr1_2:56814134-56814153	Msa0079080:CDS	35.0%
	CATTTGACCACAGTAAACAA+TGG	+	chr1_2:56814227-56814246	Msa0079080:CDS	35.0%
!!	AAGAGTTTCAAAGGGTATTG+AGG	+	chr1_2:56814358-56814377	Msa0079080:CDS	35.0%
	ACTTGAGTCAAAGCTAAATG+AGG	+	chr1_2:56814430-56814449	Msa0079080:CDS	35.0%
	TAACCAAAATCTTGACAAGG+TGG	-	chr1_2:56814555-56814574	None:intergenic	35.0%
!	TTTTGTCTTAGCACTCCTTT+TGG	+	chr1_2:56814581-56814600	Msa0079080:three_prime_UTR	35.0%
!	GCTTGCTGCAAATAACTATT+AGG	+	chr1_2:56814653-56814672	Msa0079080:three_prime_UTR	35.0%
	AAATGAAAACAAGGGGAAAG+TGG	-	chr1_2:56814939-56814958	None:intergenic	35.0%
	CATCCAAAAAGATTCTTTGC+TGG	-	chr1_2:56815049-56815068	None:intergenic	35.0%
	TGATGAAGCAATTGAGCATA+TGG	+	chr1_2:56815180-56815199	Msa0079080:three_prime_UTR	35.0%
!!	CACCCCATTTTAATAAGGTT+AGG	-	chr1_2:56815209-56815228	None:intergenic	35.0%
	CTAACCTTATTAAAATGGGG+TGG	+	chr1_2:56815207-56815226	Msa0079080:three_prime_UTR	35.0%
!!	ACATCCACCCCATTTTAATA+AGG	-	chr1_2:56815214-56815233	None:intergenic	35.0%
	TAGAGATTAGCATGAAAGTC+GGG	-	chr1_2:56815250-56815269	None:intergenic	35.0%
	GTAGAGATTAGCATGAAAGT+CGG	-	chr1_2:56815251-56815270	None:intergenic	35.0%
!	TTTTTGCTTCCTTTGTAGTC+TGG	+	chr1_2:56815296-56815315	Msa0079080:three_prime_UTR	35.0%
	ATTGTTACTCCAGACTACAA+AGG	-	chr1_2:56815308-56815327	None:intergenic	35.0%
	TTCTTGCCATATTACCAGTT+TGG	+	chr1_2:56815459-56815478	Msa0079080:intron	35.0%
	ATTCCTCCAAACTGGTAATA+TGG	-	chr1_2:56815468-56815487	None:intergenic	35.0%
!!	TCATTTTAGAAACTCAAGGC+TGG	+	chr1_2:56815643-56815662	Msa0079080:intron	35.0%
!!!	CTGGCTTGTTTTATATTTGC+AGG	+	chr1_2:56815662-56815681	Msa0079080:intron	35.0%
!	CCAGATATCAAGAGTGTAAA+CGG	-	chr1_2:56815782-56815801	None:intergenic	35.0%
	CGTTTACACTCTTGATATCT+GGG	+	chr1_2:56815780-56815799	Msa0079080:three_prime_UTR	35.0%
	GTTTACACTCTTGATATCTG+GGG	+	chr1_2:56815781-56815800	Msa0079080:three_prime_UTR	35.0%
	TTTACACTCTTGATATCTGG+GGG	+	chr1_2:56815782-56815801	Msa0079080:three_prime_UTR	35.0%
	ATACAAACGCAACGTGATTA+TGG	-	chr1_2:56815956-56815975	None:intergenic	35.0%
	GCAGAATTTCTCACTTGTAA+AGG	+	chr1_2:56815978-56815997	Msa0079080:three_prime_UTR	35.0%
!	GTAAAGGTACAGATAGTACA+AGG	+	chr1_2:56815994-56816013	Msa0079080:three_prime_UTR	35.0%
	TAGATGACTGATGAGATTAG+TGG	+	chr1_2:56816032-56816051	Msa0079080:three_prime_UTR	35.0%
	TGATGAGATTAGTGGAAAAC+TGG	+	chr1_2:56816040-56816059	Msa0079080:three_prime_UTR	35.0%
	AAGTTCATTCATAGTTCGTC+AGG	-	chr1_2:56816244-56816263	None:intergenic	35.0%
	ACGAACTATGAATGAACTTG+AGG	+	chr1_2:56816245-56816264	Msa0079080:three_prime_UTR	35.0%
	CGAACTATGAATGAACTTGA+GGG	+	chr1_2:56816246-56816265	Msa0079080:three_prime_UTR	35.0%
	ATGATACCTTGAAAGCGACA+TGG	-	chr1_2:56811997-56812016	None:intergenic	40.0%
!	ATGAATTCGCCAGTAGCTTT+TGG	-	chr1_2:56812150-56812169	None:intergenic	40.0%
	AAAGCTACTGGCGAATTCAT+AGG	+	chr1_2:56812150-56812169	Msa0079080:intron	40.0%
!!	TGCTTGCTATGAAACACAGT+TGG	+	chr1_2:56812203-56812222	Msa0079080:intron	40.0%
	CATATGAGTATGTGTCGTGT+CGG	+	chr1_2:56812284-56812303	Msa0079080:intron	40.0%
	GATTAAGCGTAACAAGGTGT+TGG	-	chr1_2:56812314-56812333	None:intergenic	40.0%
	AGAGTAAGGTTTAGTCGTTG+TGG	+	chr1_2:56812789-56812808	Msa0079080:intron	40.0%
	CAGTTACAATGCAAGCACAA+CGG	+	chr1_2:56813064-56813083	Msa0079080:intron	40.0%
	AGTTACAATGCAAGCACAAC+GGG	+	chr1_2:56813065-56813084	Msa0079080:intron	40.0%
	GTTCTTAGTCCAAAGCACAT+TGG	+	chr1_2:56813119-56813138	Msa0079080:intron	40.0%
!	TGAAGATGTTACTTCCAGCT+TGG	+	chr1_2:56813161-56813180	Msa0079080:intron	40.0%
!	ATGTTACTTCCAGCTTGGTA+TGG	+	chr1_2:56813166-56813185	Msa0079080:intron	40.0%
	GAAGTATATCCATACCAAGC+TGG	-	chr1_2:56813178-56813197	None:intergenic	40.0%
	CCATTAACAGGAACTAGTTC+TGG	-	chr1_2:56813357-56813376	None:intergenic	40.0%
	CCAGAACTAGTTCCTGTTAA+TGG	+	chr1_2:56813354-56813373	Msa0079080:CDS	40.0%
	CATGAAGTTTCGTCTAACCA+TGG	-	chr1_2:56813457-56813476	None:intergenic	40.0%
	AGTCTTAGTCACACACTCTA+AGG	+	chr1_2:56813558-56813577	Msa0079080:intron	40.0%
	GTCTTAGTCACACACTCTAA+GGG	+	chr1_2:56813559-56813578	Msa0079080:intron	40.0%
!	GTGAATTTTCTTTAGTCCCC+TGG	+	chr1_2:56813661-56813680	Msa0079080:intron	40.0%
	CGTTCAAAGAATTTCATCCC+AGG	-	chr1_2:56813682-56813701	None:intergenic	40.0%
	TGCAGAGATTGAAGAGGATA+TGG	+	chr1_2:56813890-56813909	Msa0079080:CDS	40.0%
	TGAAGAGGATATGGAGTTGA+AGG	+	chr1_2:56813899-56813918	Msa0079080:CDS	40.0%
	GGTAGAATATGATATGGGGT+TGG	+	chr1_2:56813920-56813939	Msa0079080:CDS	40.0%
	TATGGGGTTGGATGCTATTA+AGG	+	chr1_2:56813932-56813951	Msa0079080:CDS	40.0%
!!	GTTGAAAGTGTCAAGAGTTG+AGG	+	chr1_2:56813983-56814002	Msa0079080:CDS	40.0%
	TGAGGAGATGAACTCAGTAA+AGG	+	chr1_2:56814001-56814020	Msa0079080:CDS	40.0%
	GAGGAGATGAACTCAGTAAA+GGG	+	chr1_2:56814002-56814021	Msa0079080:CDS	40.0%
	GGTACAAGTCTCAAAAGATC+TGG	+	chr1_2:56814058-56814077	Msa0079080:CDS	40.0%
!!	GATGAAGGTGTCAAAAGATC+TGG	+	chr1_2:56814133-56814152	Msa0079080:CDS	40.0%
!	TTCAAGTCTGCTTCTTTTCC+AGG	-	chr1_2:56814194-56814213	None:intergenic	40.0%
	GACCACAGTAAACAATGGAA+AGG	+	chr1_2:56814232-56814251	Msa0079080:CDS	40.0%
	TGCCTTTCCATTGTTTACTG+TGG	-	chr1_2:56814237-56814256	None:intergenic	40.0%
	ACTGAAGCCAGAAAAAGAAG+CGG	+	chr1_2:56814331-56814350	Msa0079080:CDS	40.0%
	AGGGGAAAGTGGTGTATATA+AGG	-	chr1_2:56814928-56814947	None:intergenic	40.0%
!	GAGCCAGCAAAGAATCTTTT+TGG	+	chr1_2:56815043-56815062	Msa0079080:three_prime_UTR	40.0%
	AAAGCTCCTAACATCCATAC+AGG	+	chr1_2:56815109-56815128	Msa0079080:three_prime_UTR	40.0%
	ATTGAGCCTGTATGGATGTT+AGG	-	chr1_2:56815118-56815137	None:intergenic	40.0%
	TATCCAAGTTAACAGAGGAG+AGG	+	chr1_2:56815327-56815346	Msa0079080:three_prime_UTR	40.0%
	TTGCCATATTACCAGTTTGG+AGG	+	chr1_2:56815462-56815481	Msa0079080:intron	40.0%
	CAGGCAGATCTCATTAATAC+AGG	+	chr1_2:56815681-56815700	Msa0079080:intron	40.0%
	GGTCCAAGAAAAGTTCAAGT+CGG	+	chr1_2:56815702-56815721	Msa0079080:three_prime_UTR	40.0%
	GTCCAAGAAAAGTTCAAGTC+GGG	+	chr1_2:56815703-56815722	Msa0079080:three_prime_UTR	40.0%
!!	AACCCGACTTGAACTTTTCT+TGG	-	chr1_2:56815708-56815727	None:intergenic	40.0%
	CCATGCAGACATATAGAAGT+GGG	-	chr1_2:56815731-56815750	None:intergenic	40.0%
	ACCATGCAGACATATAGAAG+TGG	-	chr1_2:56815732-56815751	None:intergenic	40.0%
	ACTTCTATATGTCTGCATGG+TGG	+	chr1_2:56815731-56815750	Msa0079080:three_prime_UTR	40.0%
	GCACTTATCTGTGTCTTCTT+GGG	+	chr1_2:56815753-56815772	Msa0079080:three_prime_UTR	40.0%
	CCGTTTACACTCTTGATATC+TGG	+	chr1_2:56815779-56815798	Msa0079080:three_prime_UTR	40.0%
	AGTACAAGGTATATAGCGGT+CGG	+	chr1_2:56816008-56816027	Msa0079080:three_prime_UTR	40.0%
	CAATTGAGTTCACAGGGAAA+AGG	-	chr1_2:56816098-56816117	None:intergenic	40.0%
!	ATGAACTTGAGGGTCCTTTT+TGG	+	chr1_2:56816256-56816275	Msa0079080:three_prime_UTR	40.0%
	ACAAAGTTCGTGTACGGTTC+AGG	+	chr1_2:56811952-56811971	Msa0079080:intron	45.0%
	CTTGAAAGCGACATGGTGAT+AGG	-	chr1_2:56811990-56812009	None:intergenic	45.0%
!!	CTATCACCATGTCGCTTTCA+AGG	+	chr1_2:56811988-56812007	Msa0079080:intron	45.0%
	GTAAGGTTTAGTCGTTGTGG+TGG	+	chr1_2:56812792-56812811	Msa0079080:intron	45.0%
	CGTTGTGCTTGCATTGTAAC+TGG	-	chr1_2:56813066-56813085	None:intergenic	45.0%
	CTTGCACACCAAATCTTCAG+GGG	-	chr1_2:56813094-56813113	None:intergenic	45.0%
	CCTTGCACACCAAATCTTCA+GGG	-	chr1_2:56813095-56813114	None:intergenic	45.0%
	TCCTTGCACACCAAATCTTC+AGG	-	chr1_2:56813096-56813115	None:intergenic	45.0%
	CTGCATCAACCAATGTGCTT+TGG	-	chr1_2:56813131-56813150	None:intergenic	45.0%
	GCTGGAAGTAACATCTTCAG+TGG	-	chr1_2:56813160-56813179	None:intergenic	45.0%
!!	CTAGTTCTGGTGAATCAGGT+GGG	-	chr1_2:56813344-56813363	None:intergenic	45.0%
!!	ACTAGTTCTGGTGAATCAGG+TGG	-	chr1_2:56813345-56813364	None:intergenic	45.0%
!!	GGAACTAGTTCTGGTGAATC+AGG	-	chr1_2:56813348-56813367	None:intergenic	45.0%
	TTCGTCTAACCATGGGTTCA+GGG	-	chr1_2:56813449-56813468	None:intergenic	45.0%
	TTTCGTCTAACCATGGGTTC+AGG	-	chr1_2:56813450-56813469	None:intergenic	45.0%
	AGATCTGCAACTCCATAGCA+AGG	-	chr1_2:56813634-56813653	None:intergenic	45.0%
	TCACGAACCTTAGTATGCTC+TGG	-	chr1_2:56813870-56813889	None:intergenic	45.0%
	TCGTGATGCAGAGATTGAAG+AGG	+	chr1_2:56813884-56813903	Msa0079080:CDS	45.0%
	TTCAACCCTGCTTCTTCTCT+TGG	-	chr1_2:56813969-56813988	None:intergenic	45.0%
	GATGAACTCAGTAAAGGGTG+CGG	+	chr1_2:56814007-56814026	Msa0079080:CDS	45.0%
	AATGCAGAGGAACTGAAACC+AGG	+	chr1_2:56814098-56814117	Msa0079080:CDS	45.0%
	GGAACTGAAACCAGGAAAAG+AGG	+	chr1_2:56814106-56814125	Msa0079080:CDS	45.0%
!	TTCATCTCTGCCTCTTTTCC+TGG	-	chr1_2:56814119-56814138	None:intergenic	45.0%
	AGGAAAAGAGGCAGAGATGA+AGG	+	chr1_2:56814118-56814137	Msa0079080:CDS	45.0%
	AAAGCAGAGGAACTGAAACC+TGG	+	chr1_2:56814173-56814192	Msa0079080:CDS	45.0%
!	CTTGACTCCGCTTCTTTTTC+TGG	-	chr1_2:56814341-56814360	None:intergenic	45.0%
	AGCGGAGTCAAGAGTTTCAA+AGG	+	chr1_2:56814349-56814368	Msa0079080:CDS	45.0%
	GCGGAGTCAAGAGTTTCAAA+GGG	+	chr1_2:56814350-56814369	Msa0079080:CDS	45.0%
	TATTGAGGAGCTGAAACTGC+TGG	+	chr1_2:56814373-56814392	Msa0079080:CDS	45.0%
!	ACAGTAACTTGCGACTTGCT+AGG	-	chr1_2:56814520-56814539	None:intergenic	45.0%
!	CTGCCACCTTGTCAAGATTT+TGG	+	chr1_2:56814549-56814568	Msa0079080:three_prime_UTR	45.0%
	TATTTGCAGCAAGCGGTGAA+GGG	-	chr1_2:56814647-56814666	None:intergenic	45.0%
	TTATTTGCAGCAAGCGGTGA+AGG	-	chr1_2:56814648-56814667	None:intergenic	45.0%
	TGAATTAGAGAAGGCCACAG+AGG	+	chr1_2:56815021-56815040	Msa0079080:three_prime_UTR	45.0%
	CACATAGGATTGAGCCTGTA+TGG	-	chr1_2:56815126-56815145	None:intergenic	45.0%
	GAGGAGGTTAAGCAATCAAG+AGG	+	chr1_2:56815346-56815365	Msa0079080:three_prime_UTR	45.0%
	ATAAGGGGACATCCCTAAAG+AGG	-	chr1_2:56815602-56815621	None:intergenic	45.0%
	CCCACTTCTATATGTCTGCA+TGG	+	chr1_2:56815728-56815747	Msa0079080:three_prime_UTR	45.0%
	GGCACTTATCTGTGTCTTCT+TGG	+	chr1_2:56815752-56815771	Msa0079080:three_prime_UTR	45.0%
	AATGCTCCATCTGATCTGTC+TGG	+	chr1_2:56815929-56815948	Msa0079080:three_prime_UTR	45.0%
	TATGGACCAGACAGATCAGA+TGG	-	chr1_2:56815938-56815957	None:intergenic	45.0%
	GTACAAGGTATATAGCGGTC+GGG	+	chr1_2:56816009-56816028	Msa0079080:three_prime_UTR	45.0%
!!	CCCTGAAGATTTGGTGTGCA+AGG	+	chr1_2:56813092-56813111	Msa0079080:intron	50.0%
	TCGTCTAACCATGGGTTCAG+GGG	-	chr1_2:56813448-56813467	None:intergenic	50.0%
	ACACAAAGGCAACATCAGCG+AGG	-	chr1_2:56813740-56813759	None:intergenic	50.0%
	GAGAGCCAAGAGAAGAAGCA+GGG	+	chr1_2:56813961-56813980	Msa0079080:CDS	50.0%
!!	ATTCTTTGCTGGCTCCTCTG+TGG	-	chr1_2:56815038-56815057	None:intergenic	50.0%
	CCTCCTCTCCTCTGTTAACT+TGG	-	chr1_2:56815333-56815352	None:intergenic	50.0%
	CCAAGTTAACAGAGGAGAGG+AGG	+	chr1_2:56815330-56815349	Msa0079080:three_prime_UTR	50.0%
	GGCGCGAGAACTCCAACATT+TGG	-	chr1_2:56812129-56812148	None:intergenic	55.0%
	GTTCTCGCGCCAAAAGCTAC+TGG	+	chr1_2:56812138-56812157	Msa0079080:intron	55.0%
	ACGGGTAGCCCCTGAAGATT+TGG	+	chr1_2:56813083-56813102	Msa0079080:intron	55.0%
	AATCCAGTCCCCTGAACCCA+TGG	+	chr1_2:56813437-56813456	Msa0079080:CDS	55.0%
	TAACCATGGGTTCAGGGGAC+TGG	-	chr1_2:56813443-56813462	None:intergenic	55.0%
	GGAGAGCCAAGAGAAGAAGC+AGG	+	chr1_2:56813960-56813979	Msa0079080:CDS	55.0%
!	GAACTCAGTAAAGGGTGCGG+AGG	+	chr1_2:56814010-56814029	Msa0079080:CDS	55.0%
	ATCTGGGGGATCAGTCGTCC+AGG	+	chr1_2:56815796-56815815	Msa0079080:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	56811873	56816285	56811873	ID=Msa0079080;Name=Msa0079080
chr1_2	mRNA	56811873	56816285	56811873	ID=Msa0079080-mRNA-1;Parent=Msa0079080;Name=Msa0079080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.66\|0.75\|1\|1\|0.75\|4\|1452\|297
chr1_2	exon	56811873	56811878	56811873	ID=Msa0079080-mRNA-1:exon:17905;Parent=Msa0079080-mRNA-1
chr1_2	exon	56813282	56813458	56813282	ID=Msa0079080-mRNA-1:exon:17906;Parent=Msa0079080-mRNA-1
chr1_2	exon	56813831	56815391	56813831	ID=Msa0079080-mRNA-1:exon:17907;Parent=Msa0079080-mRNA-1
chr1_2	exon	56815684	56816285	56815684	ID=Msa0079080-mRNA-1:exon:17908;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56811873	56811878	56811873	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56813282	56813458	56813282	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	CDS	56813831	56814541	56813831	ID=Msa0079080-mRNA-1:cds;Parent=Msa0079080-mRNA-1
chr1_2	three_prime_UTR	56814542	56815391	56814542	ID=Msa0079080-mRNA-1:three_prime_utr;Parent=Msa0079080-mRNA-1
chr1_2	three_prime_UTR	56815684	56816285	56815684	ID=Msa0079080-mRNA-1:three_prime_utr;Parent=Msa0079080-mRNA-1

Gene Sequence

>Msa0079080

ATGCTTTTTGTCAAGGATGGACTGCGATATATTGAAGAAAATAAGCTGAAGGTGGCTCTGATTAGCCCACCTGATTCACCAGAACTAGTTCCTGTTAATGGAGACTCAAAGAATGGATTTCATCATGAAAAAGTTCAGATACATGGCAAAGACGAAATTGAAATCCAGTCCCCTGAACCCATGGTTCTTAAAAAACCAGAGCATAATAAGGTTCATATACCAGAGCATACTAAGGTTCGTGATGCAGAGATTGAAGAGGATATGGAGTTGAAGGTAGAATATGATATGGGGTTGGATGCTATTAAGGATGTAGGAGAGCCAAGAGAAGAAGCAGGGTTGAAAGTGTCAAGAGTTGAGGAGATGAACTCAGTAAAGGGTGCGGAGGAACTGAAACCACAGAAAAAAATAGAGGTACAAGTCTCAAAAGATCTGGATTCAATCACAGTAAAGAATGCAGAGGAACTGAAACCAGGAAAAGAGGCAGAGATGAAGGTGTCAAAAGATCTGGGTTCAATTACAGTAAAGAAAGCAGAGGAACTGAAACCTGGAAAAGAAGCAGACTTGAATGTGTTAAAAGATCATTTGACCACAGTAAACAATGGAAAGGCACTGACGCCAGAAAAAGAAATAGAGTCAAAAGTGTCAACCGATACAGTGATTAAGACAGTAAAGAATGTTGAGGAACTGAAGCCAGAAAAAGAAGCGGAGTCAAGAGTTTCAAAGGGTATTGAGGAGCTGAAACTGCTGGAAGCCATTGAAGAGATGAAGTTAAAACTAGATGGACTTGAGTCAAAGCTAAATGAGGTCAGCATTCCACCATTCTATTGTGAATTTTTTTTTATCTGCTTGCTGTTACATGTGACATGCTTCCTAGCAAGTCGCAAGTTACTGTAA

Protein sequence

>Msa0079080

MLFVKDGLRYIEENKLKVALISPPDSPELVPVNGDSKNGFHHEKVQIHGKDEIEIQSPEPMVLKKPEHNKVHIPEHTKVRDAEIEEDMELKVEYDMGLDAIKDVGEPREEAGLKVSRVEEMNSVKGAEELKPQKKIEVQVSKDLDSITVKNAEELKPGKEAEMKVSKDLGSITVKKAEELKPGKEADLNVLKDHLTTVNNGKALTPEKEIESKVSTDTVIKTVKNVEELKPEKEAESRVSKGIEELKLLEAIEEMKLKLDGLESKLNEVSIPPFYCEFFFICLLLHVTCFLASRKLL*