Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017680 | sp|P46604|HAT22_ARATH | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 6.38e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0017680 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017680 | Msa0098030 | 0.871994 | 4.468833e-67 | -8.615850e-47 |
| Msa0017680 | Msa0307660 | 0.818468 | 1.929385e-52 | -8.615850e-47 |
| Msa0017680 | Msa0792380 | 0.818461 | 1.937182e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017680 | MtrunA17_Chr1g0151971 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Msa0017680 | MtrunA17_Chr4g0054421 | 72.308 | 130 | 32 | 2 | 118 | 245 | 112 | 239 | 3.63e-60 | 192 |
| Msa0017680 | MtrunA17_Chr5g0400781 | 50.431 | 232 | 98 | 5 | 49 | 272 | 41 | 263 | 8.83e-60 | 191 |
| Msa0017680 | MtrunA17_Chr1g0175651 | 70.079 | 127 | 36 | 1 | 119 | 245 | 142 | 266 | 1.04e-57 | 186 |
| Msa0017680 | MtrunA17_Chr7g0258831 | 69.919 | 123 | 35 | 1 | 124 | 246 | 153 | 273 | 1.88e-56 | 183 |
| Msa0017680 | MtrunA17_Chr3g0135331 | 48.473 | 262 | 111 | 10 | 28 | 271 | 34 | 289 | 1.34e-53 | 176 |
| Msa0017680 | MtrunA17_Chr5g0399491 | 51.892 | 185 | 75 | 5 | 89 | 271 | 96 | 268 | 1.89e-53 | 175 |
| Msa0017680 | MtrunA17_Chr4g0055851 | 52.778 | 180 | 68 | 5 | 89 | 267 | 85 | 248 | 1.20e-52 | 172 |
| Msa0017680 | MtrunA17_Chr2g0308611 | 71.552 | 116 | 31 | 1 | 130 | 245 | 199 | 312 | 2.78e-52 | 173 |
| Msa0017680 | MtrunA17_Chr8g0335131 | 69.565 | 115 | 32 | 2 | 130 | 243 | 145 | 257 | 1.05e-49 | 166 |
| Msa0017680 | MtrunA17_Chr4g0044091 | 47.674 | 172 | 67 | 5 | 85 | 243 | 20 | 181 | 1.41e-41 | 142 |
| Msa0017680 | MtrunA17_Chr2g0299031 | 49.032 | 155 | 75 | 3 | 95 | 249 | 49 | 199 | 6.09e-37 | 130 |
| Msa0017680 | MtrunA17_Chr4g0071411 | 59.292 | 113 | 44 | 2 | 133 | 243 | 90 | 202 | 2.47e-34 | 124 |
| Msa0017680 | MtrunA17_Chr6g0450991 | 51.648 | 91 | 44 | 0 | 128 | 218 | 64 | 154 | 7.15e-21 | 89.7 |
| Msa0017680 | MtrunA17_Chr7g0217111 | 42.991 | 107 | 54 | 1 | 130 | 229 | 79 | 185 | 2.48e-18 | 82.4 |
| Msa0017680 | MtrunA17_Chr7g0265521 | 41.346 | 104 | 61 | 0 | 115 | 218 | 47 | 150 | 4.83e-18 | 80.9 |
| Msa0017680 | MtrunA17_Chr8g0381741 | 44.628 | 121 | 56 | 3 | 105 | 218 | 32 | 148 | 1.87e-17 | 80.5 |
| Msa0017680 | MtrunA17_Chr3g0119291 | 45.631 | 103 | 47 | 2 | 125 | 218 | 51 | 153 | 4.75e-17 | 78.6 |
| Msa0017680 | MtrunA17_Chr5g0416391 | 43.434 | 99 | 54 | 1 | 122 | 218 | 66 | 164 | 5.15e-17 | 79.0 |
| Msa0017680 | MtrunA17_Chr8g0362151 | 40.678 | 118 | 59 | 2 | 103 | 218 | 56 | 164 | 9.13e-17 | 78.2 |
| Msa0017680 | MtrunA17_Chr3g0123691 | 47.368 | 95 | 43 | 1 | 131 | 218 | 60 | 154 | 1.46e-16 | 77.8 |
| Msa0017680 | MtrunA17_Chr1g0179581 | 44.944 | 89 | 49 | 0 | 125 | 213 | 22 | 110 | 1.90e-16 | 73.6 |
| Msa0017680 | MtrunA17_Chr8g0362751 | 46.875 | 96 | 44 | 1 | 129 | 217 | 87 | 182 | 3.08e-16 | 76.6 |
| Msa0017680 | MtrunA17_Chr6g0453021 | 47.872 | 94 | 42 | 1 | 131 | 217 | 96 | 189 | 5.98e-16 | 75.9 |
| Msa0017680 | MtrunA17_Chr4g0060031 | 48.864 | 88 | 45 | 0 | 131 | 218 | 95 | 182 | 8.36e-16 | 76.3 |
| Msa0017680 | MtrunA17_Chr5g0415941 | 45.263 | 95 | 45 | 1 | 131 | 218 | 87 | 181 | 4.27e-15 | 73.9 |
| Msa0017680 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 134 | 219 | 41 | 133 | 2.79e-11 | 62.0 |
| Msa0017680 | MtrunA17_Chr5g0403691 | 45.882 | 85 | 46 | 0 | 131 | 215 | 53 | 137 | 3.26e-11 | 61.6 |
| Msa0017680 | MtrunA17_Chr5g0410711 | 34.375 | 128 | 72 | 2 | 90 | 216 | 61 | 177 | 7.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017680 | AT4G37790.1 | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 6.49e-61 | 194 |
| Msa0017680 | AT5G06710.1 | 56.425 | 179 | 63 | 5 | 89 | 258 | 140 | 312 | 1.98e-58 | 189 |
| Msa0017680 | AT2G22800.1 | 45.968 | 248 | 108 | 6 | 1 | 245 | 1 | 225 | 2.66e-54 | 177 |
| Msa0017680 | AT4G16780.1 | 59.589 | 146 | 48 | 4 | 124 | 267 | 121 | 257 | 1.70e-51 | 170 |
| Msa0017680 | AT3G60390.1 | 66.667 | 123 | 40 | 1 | 121 | 243 | 152 | 273 | 1.11e-50 | 169 |
| Msa0017680 | AT5G47370.1 | 46.544 | 217 | 91 | 7 | 65 | 270 | 54 | 256 | 3.80e-49 | 164 |
| Msa0017680 | AT2G44910.1 | 68.376 | 117 | 34 | 2 | 130 | 245 | 162 | 276 | 1.24e-48 | 164 |
| Msa0017680 | AT4G17460.1 | 40.408 | 245 | 132 | 6 | 16 | 247 | 7 | 250 | 4.06e-46 | 156 |
| Msa0017680 | AT2G01430.1 | 46.584 | 161 | 73 | 5 | 94 | 245 | 93 | 249 | 1.73e-38 | 136 |
| Msa0017680 | AT1G70920.1 | 46.667 | 150 | 67 | 2 | 106 | 253 | 44 | 182 | 1.85e-34 | 124 |
| Msa0017680 | AT1G70920.2 | 46.667 | 150 | 67 | 2 | 106 | 253 | 14 | 152 | 2.10e-34 | 122 |
| Msa0017680 | AT5G06710.4 | 54.369 | 103 | 37 | 3 | 89 | 182 | 140 | 241 | 1.75e-23 | 97.1 |
| Msa0017680 | AT2G01430.2 | 46.465 | 99 | 44 | 3 | 93 | 182 | 92 | 190 | 9.34e-20 | 85.5 |
| Msa0017680 | AT3G01470.1 | 46.316 | 95 | 44 | 1 | 129 | 216 | 66 | 160 | 1.74e-17 | 80.5 |
| Msa0017680 | AT1G69780.1 | 46.591 | 88 | 47 | 0 | 131 | 218 | 85 | 172 | 2.43e-16 | 77.8 |
| Msa0017680 | AT1G26960.1 | 39.837 | 123 | 68 | 3 | 126 | 246 | 64 | 182 | 2.99e-16 | 76.6 |
| Msa0017680 | AT5G15150.1 | 38.462 | 143 | 75 | 3 | 122 | 253 | 102 | 242 | 8.08e-16 | 76.3 |
| Msa0017680 | AT2G22430.1 | 37.956 | 137 | 72 | 3 | 95 | 221 | 23 | 156 | 1.12e-15 | 75.9 |
| Msa0017680 | AT4G40060.1 | 42.857 | 105 | 56 | 1 | 121 | 221 | 49 | 153 | 3.06e-15 | 74.3 |
| Msa0017680 | AT5G65310.1 | 43.434 | 99 | 49 | 1 | 131 | 222 | 72 | 170 | 6.49e-15 | 73.9 |
| Msa0017680 | AT5G65310.2 | 43.434 | 99 | 49 | 1 | 131 | 222 | 54 | 152 | 7.88e-15 | 73.2 |
| Msa0017680 | AT1G27045.1 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 8.66e-15 | 72.0 |
| Msa0017680 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 131 | 196 | 17 | 82 | 1.10e-14 | 70.9 |
| Msa0017680 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 1.23e-14 | 70.9 |
| Msa0017680 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 1.23e-14 | 70.9 |
| Msa0017680 | AT1G27045.4 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 1.30e-14 | 72.0 |
| Msa0017680 | AT2G36610.1 | 41.176 | 102 | 52 | 1 | 126 | 219 | 66 | 167 | 4.54e-14 | 69.3 |
| Msa0017680 | AT3G01220.1 | 41.667 | 108 | 52 | 2 | 122 | 218 | 74 | 181 | 4.64e-14 | 71.2 |
| Msa0017680 | AT5G03790.1 | 40.449 | 89 | 53 | 0 | 131 | 219 | 77 | 165 | 3.24e-13 | 67.8 |
| Msa0017680 | AT2G46680.2 | 42.353 | 85 | 49 | 0 | 134 | 218 | 35 | 119 | 1.45e-12 | 66.2 |
| Msa0017680 | AT2G46680.1 | 42.353 | 85 | 49 | 0 | 134 | 218 | 35 | 119 | 1.58e-12 | 66.2 |
| Msa0017680 | AT5G03790.2 | 36.207 | 116 | 68 | 2 | 131 | 240 | 77 | 192 | 3.19e-12 | 64.3 |
| Msa0017680 | AT2G18550.1 | 37.864 | 103 | 63 | 1 | 115 | 217 | 46 | 147 | 3.48e-11 | 62.0 |
Find 66 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGAATCTTCATATAAA+AGG | 0.190194 | 1_1:+29529250 | None:intergenic |
| TCTTCACTCTCTTCCTTTGA+TGG | 0.194879 | 1_1:+29531039 | None:intergenic |
| ACATTTCCTATCCTTGTAAT+TGG | 0.209590 | 1_1:+29530856 | None:intergenic |
| AAAACCTTGAAGAAAATTAT+TGG | 0.218253 | 1_1:+29531250 | None:intergenic |
| AGAAAATGTTGATGATTATT+AGG | 0.223772 | 1_1:+29531403 | None:intergenic |
| CCCTCAACAACATTGCTTAC+TGG | 0.286571 | 1_1:-29529164 | Msa0017680:CDS |
| GTGAGCCTAAGTTTCTTCCT+TGG | 0.317530 | 1_1:+29530817 | None:intergenic |
| AAAACAACAATCAGAAGTTT+TGG | 0.327778 | 1_1:-29530794 | Msa0017680:CDS |
| AAATCCATCAAAATGCATTA+AGG | 0.347365 | 1_1:-29531085 | Msa0017680:CDS |
| TTGTAGGTTGCAATATTCTT+TGG | 0.352214 | 1_1:+29531279 | None:intergenic |
| CTTCAACTTGATCTTGATCT+AGG | 0.366943 | 1_1:-29531171 | Msa0017680:CDS |
| TGAGCCTAAGTTTCTTCCTT+GGG | 0.367322 | 1_1:+29530818 | None:intergenic |
| GGAGAGTGGTGAGGAATTTG+AGG | 0.383101 | 1_1:-29530896 | Msa0017680:CDS |
| ACCACTCTCCTTCCTGATGC+TGG | 0.385112 | 1_1:+29530909 | None:intergenic |
| GCTTATCCAATGCTTACATT+AGG | 0.396378 | 1_1:-29531063 | Msa0017680:CDS |
| AAATTATTGGAGGAGCTTGT+AGG | 0.401643 | 1_1:+29531263 | None:intergenic |
| TAGAGGTGTGGTTTCAAAAT+CGG | 0.417824 | 1_1:-29529973 | Msa0017680:CDS |
| TTGATGAAAATCGGCTTAGA+AGG | 0.425528 | 1_1:-29528944 | Msa0017680:three_prime_UTR |
| TGTGTTATGTTGATGAAAAT+CGG | 0.433278 | 1_1:-29528953 | Msa0017680:three_prime_UTR |
| TTTCAAATTCCACCAGCATC+AGG | 0.453960 | 1_1:-29530921 | Msa0017680:CDS |
| GATGATTATTAGGATTTAGT+GGG | 0.457094 | 1_1:+29531413 | None:intergenic |
| TGATGATTATTAGGATTTAG+TGG | 0.461554 | 1_1:+29531412 | None:intergenic |
| AGCAAATAAGCTGAATCTGC+AGG | 0.462898 | 1_1:-29530005 | Msa0017680:CDS |
| CCTTCGTGCGAGACAATTTG+TGG | 0.481936 | 1_1:-29529209 | Msa0017680:CDS |
| AAGCAATGTTGTTGAGGGTA+AGG | 0.487754 | 1_1:+29529169 | None:intergenic |
| TATAAACACGAGTTTATAAG+TGG | 0.489216 | 1_1:+29528910 | None:intergenic |
| GCTGGAATCTTCATATAAAA+GGG | 0.492378 | 1_1:+29529251 | None:intergenic |
| ATAGGAAATGTTGATAAAGA+TGG | 0.494478 | 1_1:-29530844 | Msa0017680:CDS |
| GACATATATTTGATATAGAT+CGG | 0.499381 | 1_1:-29529039 | Msa0017680:three_prime_UTR |
| GATGGTCCTAATGTAAGCAT+TGG | 0.505729 | 1_1:+29531057 | None:intergenic |
| GGTTTCAAAATCGGAGAGCC+AGG | 0.511878 | 1_1:-29529964 | Msa0017680:intron |
| GGAGAACAAGAAGTTGCAAA+AGG | 0.515455 | 1_1:-29529315 | Msa0017680:CDS |
| GATCATCAAAATGATCATGA+AGG | 0.517966 | 1_1:+29531142 | None:intergenic |
| CCAGTAAGCAATGTTGTTGA+GGG | 0.519543 | 1_1:+29529164 | None:intergenic |
| CACAAATTGTCTCGCACGAA+GGG | 0.524067 | 1_1:+29529210 | None:intergenic |
| AGAGCATTCTACTCTTAATC+CGG | 0.524461 | 1_1:-29530758 | Msa0017680:intron |
| AAGGTGCCAATTACAAGGAT+AGG | 0.527337 | 1_1:-29530862 | Msa0017680:CDS |
| GCCAGTAAGCAATGTTGTTG+AGG | 0.532003 | 1_1:+29529163 | None:intergenic |
| CAGAACAAAGCTGAAACAAA+CGG | 0.533275 | 1_1:-29529384 | Msa0017680:CDS |
| GAAATAGGAAATGATAGGAA+TGG | 0.538478 | 1_1:+29531343 | None:intergenic |
| ATTTGAGGTAGAGATAGAAA+AGG | 0.543575 | 1_1:-29530881 | Msa0017680:CDS |
| ACTCTCCTTCCTGATGCTGG+TGG | 0.545711 | 1_1:+29530912 | None:intergenic |
| TAGAAAAGGTGCCAATTACA+AGG | 0.547476 | 1_1:-29530867 | Msa0017680:CDS |
| ATCAAGTTGAAGCCATGTGT+TGG | 0.549755 | 1_1:+29531182 | None:intergenic |
| GTAGCCCAAGGAAGAAACTT+AGG | 0.555898 | 1_1:-29530822 | Msa0017680:CDS |
| AAGTTGAAGCCATGTGTTGG+AGG | 0.556547 | 1_1:+29531185 | None:intergenic |
| ATCATCAAAATGATCATGAA+GGG | 0.572662 | 1_1:+29531143 | None:intergenic |
| GATGTGAAATAGGAAATGAT+AGG | 0.577447 | 1_1:+29531338 | None:intergenic |
| CTTGCAGAAGTAAATTGAGT+AGG | 0.581739 | 1_1:+29530958 | None:intergenic |
| GCTTACATTAGGACCATCAA+AGG | 0.583436 | 1_1:-29531052 | Msa0017680:CDS |
| TGTCTCGCACGAAGGGCAGA+TGG | 0.584824 | 1_1:+29529217 | None:intergenic |
| ATGATTATTAGGATTTAGTG+GGG | 0.587890 | 1_1:+29531414 | None:intergenic |
| ATTTGTGGTGGCAACAACAA+TGG | 0.596806 | 1_1:-29529194 | Msa0017680:CDS |
| CAGATGGTAAGTGTTGCTGC+TGG | 0.599263 | 1_1:+29529233 | None:intergenic |
| ACCTTGAAGAAAATTATTGG+AGG | 0.600954 | 1_1:+29531253 | None:intergenic |
| TTGATGATACCTCCAACACA+TGG | 0.609555 | 1_1:-29531194 | Msa0017680:CDS |
| ACAACATTCAACATCAAAGA+CGG | 0.613762 | 1_1:-29531001 | Msa0017680:CDS |
| AAATTCCACCAGCATCAGGA+AGG | 0.618266 | 1_1:-29530917 | Msa0017680:CDS |
| TCTGCAGGCTAGACAAGTAG+AGG | 0.619659 | 1_1:-29529990 | Msa0017680:CDS |
| TTGATAAAGATGGTAGCCCA+AGG | 0.634722 | 1_1:-29530834 | Msa0017680:CDS |
| TCGTGCGAGACAATTTGTGG+TGG | 0.644683 | 1_1:-29529206 | Msa0017680:CDS |
| ACCAGCATCAGGAAGGAGAG+TGG | 0.645786 | 1_1:-29530910 | Msa0017680:CDS |
| GTGTTGCGAATCTCTAACAG+AGG | 0.648660 | 1_1:-29529336 | Msa0017680:CDS |
| CCACAAATTGTCTCGCACGA+AGG | 0.651452 | 1_1:+29529209 | None:intergenic |
| CATCAGGAAGGAGAGTGGTG+AGG | 0.670590 | 1_1:-29530905 | Msa0017680:CDS |
| AGGCTAGACAAGTAGAGGTG+TGG | 0.674713 | 1_1:-29529985 | Msa0017680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATTAAATTCTA+AGG | + | chr1_1:29530187-29530206 | None:intergenic | 10.0% |
| !!! | ATTTTATTAGAATTAGATCT+TGG | - | chr1_1:29529882-29529901 | Msa0017680:intron | 15.0% |
| !! | AAGTTTATAAAAATTGTTTC+AGG | + | chr1_1:29530092-29530111 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAACTTGTA+CGG | - | chr1_1:29530095-29530114 | Msa0017680:intron | 15.0% |
| !! | AAACAAAGAAGTAAAATATA+TGG | + | chr1_1:29530598-29530617 | None:intergenic | 15.0% |
| !!! | AAAAATCTAGTTTTCTATAA+TGG | - | chr1_1:29531327-29531346 | Msa0017680:five_prime_UTR | 15.0% |
| !!! | AGAAAATGTTGATGATTATT+AGG | + | chr1_1:29528933-29528952 | None:intergenic | 20.0% |
| !! | AAAGTAAATATGAAAAAGAG+AGG | + | chr1_1:29529020-29529039 | None:intergenic | 20.0% |
| !! | AAAACCTTGAAGAAAATTAT+TGG | + | chr1_1:29529086-29529105 | None:intergenic | 20.0% |
| !! | ATGAGAATATTGATGAATTA+AGG | + | chr1_1:29529603-29529622 | None:intergenic | 20.0% |
| !! | AGTTTCAAAATTTATTCTCT+TGG | - | chr1_1:29529963-29529982 | Msa0017680:intron | 20.0% |
| !! | TTTCAGGAAATTATTTATTC+TGG | + | chr1_1:29530076-29530095 | None:intergenic | 20.0% |
| !!! | GAAACATTTCTAAAAAAATG+AGG | + | chr1_1:29530144-29530163 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAGAAATGTTTC+TGG | - | chr1_1:29530144-29530163 | Msa0017680:intron | 20.0% |
| !! | AAATTTGTAATACATTGGAT+TGG | + | chr1_1:29530230-29530249 | None:intergenic | 20.0% |
| !! | CTACAAAATTTGTAATACAT+TGG | + | chr1_1:29530235-29530254 | None:intergenic | 20.0% |
| !!! | ACTTCTTTGTTTTTTTTTAC+TGG | - | chr1_1:29530606-29530625 | Msa0017680:intron | 20.0% |
| !! | ATATAATTTCACAAAATCTG+AGG | + | chr1_1:29530894-29530913 | None:intergenic | 20.0% |
| !!! | TCATTTCCATAAAAACTTTT+TGG | - | chr1_1:29531204-29531223 | Msa0017680:CDS | 20.0% |
| !!! | ATCAAACCAAAAAGTTTTTA+TGG | + | chr1_1:29531213-29531232 | None:intergenic | 20.0% |
| !! | GACATATATTTGATATAGAT+CGG | - | chr1_1:29531294-29531313 | Msa0017680:five_prime_UTR | 20.0% |
| !!! | TATAGAAAACTAGATTTTTG+TGG | + | chr1_1:29531326-29531345 | None:intergenic | 20.0% |
| ! | ATGATTATTAGGATTTAGTG+GGG | + | chr1_1:29528922-29528941 | None:intergenic | 25.0% |
| ! | GATGATTATTAGGATTTAGT+GGG | + | chr1_1:29528923-29528942 | None:intergenic | 25.0% |
| ! | TGATGATTATTAGGATTTAG+TGG | + | chr1_1:29528924-29528943 | None:intergenic | 25.0% |
| ! | ATCATCAAAATGATCATGAA+GGG | + | chr1_1:29529193-29529212 | None:intergenic | 25.0% |
| !!! | ATGATCATTTTGATGATCAT+GGG | - | chr1_1:29529196-29529215 | Msa0017680:CDS | 25.0% |
| ! | AAATCCATCAAAATGCATTA+AGG | - | chr1_1:29529248-29529267 | Msa0017680:CDS | 25.0% |
| !! | ATAGGAAATGTTGATAAAGA+TGG | - | chr1_1:29529489-29529508 | Msa0017680:intron | 25.0% |
| !! | AAAACAACAATCAGAAGTTT+TGG | - | chr1_1:29529539-29529558 | Msa0017680:intron | 25.0% |
| ! | ATATTGATGAATTAAGGTAC+CGG | + | chr1_1:29529597-29529616 | None:intergenic | 25.0% |
| ! | CATCAATATTCTCATATCTT+TGG | - | chr1_1:29529608-29529627 | Msa0017680:intron | 25.0% |
| !! | AATATCAAAACAAAAGTACG+TGG | + | chr1_1:29529663-29529682 | None:intergenic | 25.0% |
| ! | ATATATATTGTTAGAGCGAA+AGG | - | chr1_1:29530709-29530728 | Msa0017680:intron | 25.0% |
| ! | ACAAAAAATGTTAACAGCTA+GGG | - | chr1_1:29530800-29530819 | Msa0017680:CDS | 25.0% |
| ! | AGACGTTTAAAAAGTTTAGA+AGG | + | chr1_1:29530841-29530860 | None:intergenic | 25.0% |
| !! | TGTGTTATGTTGATGAAAAT+CGG | - | chr1_1:29531380-29531399 | Msa0017680:five_prime_UTR | 25.0% |
| GAAATAGGAAATGATAGGAA+TGG | + | chr1_1:29528993-29529012 | None:intergenic | 30.0% | |
| GATGTGAAATAGGAAATGAT+AGG | + | chr1_1:29528998-29529017 | None:intergenic | 30.0% | |
| AAAAAGAGAGGATGTGAAAT+AGG | + | chr1_1:29529008-29529027 | None:intergenic | 30.0% | |
| TTGTAGGTTGCAATATTCTT+TGG | + | chr1_1:29529057-29529076 | None:intergenic | 30.0% | |
| ! | TCCTCCAATAATTTTCTTCA+AGG | - | chr1_1:29529079-29529098 | Msa0017680:three_prime_UTR | 30.0% |
| ACCTTGAAGAAAATTATTGG+AGG | + | chr1_1:29529083-29529102 | None:intergenic | 30.0% | |
| GATCATCAAAATGATCATGA+AGG | + | chr1_1:29529194-29529213 | None:intergenic | 30.0% | |
| !! | CATGATCATTTTGATGATCA+TGG | - | chr1_1:29529195-29529214 | Msa0017680:CDS | 30.0% |
| ! | TAAGCCTTAATGCATTTTGA+TGG | + | chr1_1:29529255-29529274 | None:intergenic | 30.0% |
| ACAACATTCAACATCAAAGA+CGG | - | chr1_1:29529332-29529351 | Msa0017680:CDS | 30.0% | |
| ! | ATTTGAGGTAGAGATAGAAA+AGG | - | chr1_1:29529452-29529471 | Msa0017680:intron | 30.0% |
| ACATTTCCTATCCTTGTAAT+TGG | + | chr1_1:29529480-29529499 | None:intergenic | 30.0% | |
| ! | AAAACAAAAGTACGTGGTAT+AGG | + | chr1_1:29529657-29529676 | None:intergenic | 30.0% |
| TTAGAATTAGATCTTGGTCT+TGG | - | chr1_1:29529888-29529907 | Msa0017680:intron | 30.0% | |
| TATGAAGCAAACTCAATCTA+AGG | + | chr1_1:29529944-29529963 | None:intergenic | 30.0% | |
| ! | TCTCTTGGATTACATTTTCT+AGG | - | chr1_1:29529978-29529997 | Msa0017680:CDS | 30.0% |
| ! | ATTTTACCAAACACTTTGGT+GGG | + | chr1_1:29530013-29530032 | None:intergenic | 30.0% |
| ! | CAAGATTTTACCAAACACTT+TGG | + | chr1_1:29530017-29530036 | None:intergenic | 30.0% |
| GGTAAAATCTTGATATTCCT+AGG | - | chr1_1:29530025-29530044 | Msa0017680:CDS | 30.0% | |
| ATCATCATGACAATTGCTAA+TGG | + | chr1_1:29530476-29530495 | None:intergenic | 30.0% | |
| CACAAAAAATGTTAACAGCT+AGG | - | chr1_1:29530799-29530818 | Msa0017680:CDS | 30.0% | |
| AAAGTTTAGAAGGAGGTTTA+GGG | + | chr1_1:29530831-29530850 | None:intergenic | 30.0% | |
| AAAAGTTTAGAAGGAGGTTT+AGG | + | chr1_1:29530832-29530851 | None:intergenic | 30.0% | |
| CGTTTAAAAAGTTTAGAAGG+AGG | + | chr1_1:29530838-29530857 | None:intergenic | 30.0% | |
| TTCACAAAATCTGAGGAATA+AGG | + | chr1_1:29530887-29530906 | None:intergenic | 30.0% | |
| GCTGGAATCTTCATATAAAA+GGG | + | chr1_1:29531085-29531104 | None:intergenic | 30.0% | |
| TGCTGGAATCTTCATATAAA+AGG | + | chr1_1:29531086-29531105 | None:intergenic | 30.0% | |
| ! | AGAAAACTAGATTTTTGTGG+TGG | + | chr1_1:29531323-29531342 | None:intergenic | 30.0% |
| AAATTATTGGAGGAGCTTGT+AGG | + | chr1_1:29529073-29529092 | None:intergenic | 35.0% | |
| CTTCAACTTGATCTTGATCT+AGG | - | chr1_1:29529162-29529181 | Msa0017680:CDS | 35.0% | |
| GCTTATCCAATGCTTACATT+AGG | - | chr1_1:29529270-29529289 | Msa0017680:CDS | 35.0% | |
| CTTGCAGAAGTAAATTGAGT+AGG | + | chr1_1:29529378-29529397 | None:intergenic | 35.0% | |
| !! | TAGAAAAGGTGCCAATTACA+AGG | - | chr1_1:29529466-29529485 | Msa0017680:intron | 35.0% |
| !! | ACAACAATCAGAAGTTTTGG+AGG | - | chr1_1:29529542-29529561 | Msa0017680:intron | 35.0% |
| ! | AGAGCATTCTACTCTTAATC+CGG | - | chr1_1:29529575-29529594 | Msa0017680:intron | 35.0% |
| ! | ATTATTCCCACCAAAGTGTT+TGG | - | chr1_1:29530004-29530023 | Msa0017680:CDS | 35.0% |
| ! | GATTTTACCAAACACTTTGG+TGG | + | chr1_1:29530014-29530033 | None:intergenic | 35.0% |
| CTTGATATTCCTAGGAAAGT+TGG | - | chr1_1:29530033-29530052 | Msa0017680:intron | 35.0% | |
| ! | ATATTCCTAGGAAAGTTGGT+AGG | - | chr1_1:29530037-29530056 | Msa0017680:intron | 35.0% |
| ! | TCTAAGGTGTGTTTGTTTCA+AGG | + | chr1_1:29530171-29530190 | None:intergenic | 35.0% |
| ! | TAGAGGTGTGGTTTCAAAAT+CGG | - | chr1_1:29530360-29530379 | Msa0017680:intron | 35.0% |
| CGATACTATCTTAAAACGCA+CGG | + | chr1_1:29530407-29530426 | None:intergenic | 35.0% | |
| AGGTAAAGTATGCGATCAAA+GGG | + | chr1_1:29530867-29530886 | None:intergenic | 35.0% | |
| AAGGTAAAGTATGCGATCAA+AGG | + | chr1_1:29530868-29530887 | None:intergenic | 35.0% | |
| CAGAACAAAGCTGAAACAAA+CGG | - | chr1_1:29530949-29530968 | Msa0017680:CDS | 35.0% | |
| !!! | CTAGTTTTCTATAATGGACG+TGG | - | chr1_1:29531333-29531352 | Msa0017680:five_prime_UTR | 35.0% |
| ! | TTGATGAAAATCGGCTTAGA+AGG | - | chr1_1:29531389-29531408 | Msa0017680:five_prime_UTR | 35.0% |
| ! | TTGATGATACCTCCAACACA+TGG | - | chr1_1:29529139-29529158 | Msa0017680:CDS | 40.0% |
| !! | ATCAAGTTGAAGCCATGTGT+TGG | + | chr1_1:29529154-29529173 | None:intergenic | 40.0% |
| GATGGTCCTAATGTAAGCAT+TGG | + | chr1_1:29529279-29529298 | None:intergenic | 40.0% | |
| GCTTACATTAGGACCATCAA+AGG | - | chr1_1:29529281-29529300 | Msa0017680:CDS | 40.0% | |
| TCTTCACTCTCTTCCTTTGA+TGG | + | chr1_1:29529297-29529316 | None:intergenic | 40.0% | |
| TTTCAAATTCCACCAGCATC+AGG | - | chr1_1:29529412-29529431 | Msa0017680:intron | 40.0% | |
| ! | AAGGTGCCAATTACAAGGAT+AGG | - | chr1_1:29529471-29529490 | Msa0017680:intron | 40.0% |
| TTGATAAAGATGGTAGCCCA+AGG | - | chr1_1:29529499-29529518 | Msa0017680:intron | 40.0% | |
| TGAGCCTAAGTTTCTTCCTT+GGG | + | chr1_1:29529518-29529537 | None:intergenic | 40.0% | |
| ! | CACGCACAGTATTTTTCTCA+TGG | - | chr1_1:29529784-29529803 | Msa0017680:intron | 40.0% |
| ! | TGGTCTTGGTTGATTGTGTT+TGG | - | chr1_1:29529902-29529921 | Msa0017680:intron | 40.0% |
| AGCAAATAAGCTGAATCTGC+AGG | - | chr1_1:29530328-29530347 | Msa0017680:intron | 40.0% | |
| GCGAAAGGAGAAAACTTAGA+TGG | - | chr1_1:29530724-29530743 | Msa0017680:intron | 40.0% | |
| AGGAGAAAACTTAGATGGCA+CGG | - | chr1_1:29530729-29530748 | Msa0017680:intron | 40.0% | |
| TATTCTCTACGTGCGCAATA+TGG | + | chr1_1:29530766-29530785 | None:intergenic | 40.0% | |
| GGAGAACAAGAAGTTGCAAA+AGG | - | chr1_1:29531018-29531037 | Msa0017680:CDS | 40.0% | |
| ATTTGTGGTGGCAACAACAA+TGG | - | chr1_1:29531139-29531158 | Msa0017680:CDS | 40.0% | |
| AAGCAATGTTGTTGAGGGTA+AGG | + | chr1_1:29531167-29531186 | None:intergenic | 40.0% | |
| CCAGTAAGCAATGTTGTTGA+GGG | + | chr1_1:29531172-29531191 | None:intergenic | 40.0% | |
| AAGTTGAAGCCATGTGTTGG+AGG | + | chr1_1:29529151-29529170 | None:intergenic | 45.0% | |
| AAATTCCACCAGCATCAGGA+AGG | - | chr1_1:29529416-29529435 | Msa0017680:intron | 45.0% | |
| GTAGCCCAAGGAAGAAACTT+AGG | - | chr1_1:29529511-29529530 | Msa0017680:intron | 45.0% | |
| GTGAGCCTAAGTTTCTTCCT+TGG | + | chr1_1:29529519-29529538 | None:intergenic | 45.0% | |
| ACACACCTACCAACTTTCCT+AGG | + | chr1_1:29530045-29530064 | None:intergenic | 45.0% | |
| GTGTTGCGAATCTCTAACAG+AGG | - | chr1_1:29530997-29531016 | Msa0017680:CDS | 45.0% | |
| CACAAATTGTCTCGCACGAA+GGG | + | chr1_1:29531126-29531145 | None:intergenic | 45.0% | |
| CCCTCAACAACATTGCTTAC+TGG | - | chr1_1:29531169-29531188 | Msa0017680:CDS | 45.0% | |
| GCCAGTAAGCAATGTTGTTG+AGG | + | chr1_1:29531173-29531192 | None:intergenic | 45.0% | |
| GGAGAGTGGTGAGGAATTTG+AGG | - | chr1_1:29529437-29529456 | Msa0017680:intron | 50.0% | |
| TCTGCAGGCTAGACAAGTAG+AGG | - | chr1_1:29530343-29530362 | Msa0017680:intron | 50.0% | |
| AGGCTAGACAAGTAGAGGTG+TGG | - | chr1_1:29530348-29530367 | Msa0017680:intron | 50.0% | |
| GGTTTCAAAATCGGAGAGCC+AGG | - | chr1_1:29530369-29530388 | Msa0017680:intron | 50.0% | |
| GCACGGAGCAGTAAATTACC+TGG | + | chr1_1:29530390-29530409 | None:intergenic | 50.0% | |
| ! | CAGATGGTAAGTGTTGCTGC+TGG | + | chr1_1:29531103-29531122 | None:intergenic | 50.0% |
| CCACAAATTGTCTCGCACGA+AGG | + | chr1_1:29531127-29531146 | None:intergenic | 50.0% | |
| CCTTCGTGCGAGACAATTTG+TGG | - | chr1_1:29531124-29531143 | Msa0017680:CDS | 50.0% | |
| TCGTGCGAGACAATTTGTGG+TGG | - | chr1_1:29531127-29531146 | Msa0017680:CDS | 50.0% | |
| ACTCTCCTTCCTGATGCTGG+TGG | + | chr1_1:29529424-29529443 | None:intergenic | 55.0% | |
| ACCAGCATCAGGAAGGAGAG+TGG | - | chr1_1:29529423-29529442 | Msa0017680:intron | 55.0% | |
| ACCACTCTCCTTCCTGATGC+TGG | + | chr1_1:29529427-29529446 | None:intergenic | 55.0% | |
| CATCAGGAAGGAGAGTGGTG+AGG | - | chr1_1:29529428-29529447 | Msa0017680:intron | 55.0% | |
| TGTCTCGCACGAAGGGCAGA+TGG | + | chr1_1:29531119-29531138 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29528911 | 29531444 | 29528911 | ID=Msa0017680;Name=Msa0017680 |
| chr1_1 | mRNA | 29528911 | 29531444 | 29528911 | ID=Msa0017680-mRNA-1;Parent=Msa0017680;Name=Msa0017680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=221|1|1|1|1|1|3|213|274 |
| chr1_1 | exon | 29528911 | 29529403 | 29528911 | ID=Msa0017680-mRNA-1:exon:9857;Parent=Msa0017680-mRNA-1 |
| chr1_1 | exon | 29529965 | 29530044 | 29529965 | ID=Msa0017680-mRNA-1:exon:9856;Parent=Msa0017680-mRNA-1 |
| chr1_1 | exon | 29530759 | 29531444 | 29530759 | ID=Msa0017680-mRNA-1:exon:9855;Parent=Msa0017680-mRNA-1 |
| chr1_1 | five_prime_UTR | 29531224 | 29531444 | 29531224 | ID=Msa0017680-mRNA-1:five_prime_utr;Parent=Msa0017680-mRNA-1 |
| chr1_1 | CDS | 29530759 | 29531223 | 29530759 | ID=Msa0017680-mRNA-1:cds;Parent=Msa0017680-mRNA-1 |
| chr1_1 | CDS | 29529965 | 29530044 | 29529965 | ID=Msa0017680-mRNA-1:cds;Parent=Msa0017680-mRNA-1 |
| chr1_1 | CDS | 29529124 | 29529403 | 29529124 | ID=Msa0017680-mRNA-1:cds;Parent=Msa0017680-mRNA-1 |
| chr1_1 | three_prime_UTR | 29528911 | 29529123 | 29528911 | ID=Msa0017680-mRNA-1:three_prime_utr;Parent=Msa0017680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
