Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792380 | XP_013465933.1 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792380 | sp|P46604|HAT22_ARATH | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 5.85e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792380 | A0A072VD79 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0792380 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017680 | Msa0792380 | 0.818461 | 1.937182e-52 | -8.615850e-47 |
| Msa0098030 | Msa0792380 | 0.818951 | 1.499547e-52 | -8.615850e-47 |
| Msa0307660 | Msa0792380 | 0.976733 | 2.150595e-142 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792380 | MtrunA17_Chr1g0151971 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Msa0792380 | MtrunA17_Chr4g0054421 | 72.308 | 130 | 32 | 2 | 118 | 245 | 112 | 239 | 3.12e-60 | 192 |
| Msa0792380 | MtrunA17_Chr5g0400781 | 49.784 | 231 | 101 | 5 | 49 | 272 | 41 | 263 | 2.93e-59 | 189 |
| Msa0792380 | MtrunA17_Chr1g0175651 | 70.079 | 127 | 36 | 1 | 119 | 245 | 142 | 266 | 9.93e-58 | 186 |
| Msa0792380 | MtrunA17_Chr7g0258831 | 69.919 | 123 | 35 | 1 | 124 | 246 | 153 | 273 | 1.65e-56 | 183 |
| Msa0792380 | MtrunA17_Chr3g0135331 | 48.473 | 262 | 111 | 10 | 28 | 271 | 34 | 289 | 2.54e-54 | 177 |
| Msa0792380 | MtrunA17_Chr5g0399491 | 51.892 | 185 | 75 | 5 | 89 | 271 | 96 | 268 | 2.10e-53 | 175 |
| Msa0792380 | MtrunA17_Chr4g0055851 | 52.778 | 180 | 68 | 5 | 89 | 267 | 85 | 248 | 1.77e-52 | 172 |
| Msa0792380 | MtrunA17_Chr2g0308611 | 71.552 | 116 | 31 | 1 | 130 | 245 | 199 | 312 | 2.72e-52 | 173 |
| Msa0792380 | MtrunA17_Chr8g0335131 | 69.565 | 115 | 32 | 2 | 130 | 243 | 145 | 257 | 8.87e-50 | 166 |
| Msa0792380 | MtrunA17_Chr4g0044091 | 47.674 | 172 | 67 | 5 | 85 | 243 | 20 | 181 | 1.55e-41 | 141 |
| Msa0792380 | MtrunA17_Chr2g0299031 | 49.032 | 155 | 75 | 3 | 95 | 249 | 49 | 199 | 5.02e-37 | 130 |
| Msa0792380 | MtrunA17_Chr4g0071411 | 59.292 | 113 | 44 | 2 | 133 | 243 | 90 | 202 | 3.26e-34 | 123 |
| Msa0792380 | MtrunA17_Chr6g0450991 | 51.648 | 91 | 44 | 0 | 128 | 218 | 64 | 154 | 7.83e-21 | 89.7 |
| Msa0792380 | MtrunA17_Chr7g0217111 | 42.991 | 107 | 54 | 1 | 130 | 229 | 79 | 185 | 3.32e-18 | 82.0 |
| Msa0792380 | MtrunA17_Chr3g0119291 | 33.511 | 188 | 78 | 6 | 125 | 273 | 51 | 230 | 4.30e-18 | 81.6 |
| Msa0792380 | MtrunA17_Chr8g0381741 | 45.455 | 121 | 55 | 3 | 105 | 218 | 32 | 148 | 4.74e-18 | 82.4 |
| Msa0792380 | MtrunA17_Chr7g0265521 | 41.748 | 103 | 60 | 0 | 115 | 217 | 47 | 149 | 1.18e-17 | 79.7 |
| Msa0792380 | MtrunA17_Chr5g0416391 | 44.444 | 99 | 53 | 1 | 122 | 218 | 66 | 164 | 1.47e-17 | 80.5 |
| Msa0792380 | MtrunA17_Chr8g0362151 | 41.525 | 118 | 58 | 2 | 103 | 218 | 56 | 164 | 2.56e-17 | 79.7 |
| Msa0792380 | MtrunA17_Chr3g0123691 | 46.226 | 106 | 49 | 2 | 121 | 218 | 49 | 154 | 4.12e-17 | 79.3 |
| Msa0792380 | MtrunA17_Chr6g0453021 | 48.936 | 94 | 41 | 1 | 131 | 217 | 96 | 189 | 1.80e-16 | 77.4 |
| Msa0792380 | MtrunA17_Chr8g0362751 | 46.875 | 96 | 44 | 1 | 129 | 217 | 87 | 182 | 3.71e-16 | 76.6 |
| Msa0792380 | MtrunA17_Chr1g0179581 | 43.820 | 89 | 50 | 0 | 125 | 213 | 22 | 110 | 8.47e-16 | 71.6 |
| Msa0792380 | MtrunA17_Chr4g0060031 | 48.864 | 88 | 45 | 0 | 131 | 218 | 95 | 182 | 8.61e-16 | 76.3 |
| Msa0792380 | MtrunA17_Chr5g0415941 | 45.263 | 95 | 45 | 1 | 131 | 218 | 87 | 181 | 4.99e-15 | 73.9 |
| Msa0792380 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 134 | 219 | 41 | 133 | 1.12e-11 | 63.2 |
| Msa0792380 | MtrunA17_Chr5g0403691 | 45.882 | 85 | 46 | 0 | 131 | 215 | 53 | 137 | 2.82e-11 | 62.0 |
| Msa0792380 | MtrunA17_Chr8g0346251 | 36.585 | 123 | 72 | 2 | 94 | 216 | 10 | 126 | 7.96e-11 | 60.8 |
| Msa0792380 | MtrunA17_Chr5g0410711 | 34.375 | 128 | 72 | 2 | 90 | 216 | 61 | 177 | 8.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792380 | AT4G37790.1 | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 5.95e-61 | 194 |
| Msa0792380 | AT5G06710.1 | 56.425 | 179 | 63 | 5 | 89 | 258 | 140 | 312 | 1.45e-58 | 190 |
| Msa0792380 | AT2G22800.1 | 45.968 | 248 | 108 | 6 | 1 | 245 | 1 | 225 | 2.90e-54 | 177 |
| Msa0792380 | AT4G16780.1 | 59.589 | 146 | 48 | 4 | 124 | 267 | 121 | 257 | 2.00e-51 | 170 |
| Msa0792380 | AT3G60390.1 | 66.667 | 123 | 40 | 1 | 121 | 243 | 152 | 273 | 9.19e-51 | 169 |
| Msa0792380 | AT5G47370.1 | 46.544 | 217 | 91 | 7 | 65 | 270 | 54 | 256 | 3.06e-49 | 164 |
| Msa0792380 | AT2G44910.1 | 68.376 | 117 | 34 | 2 | 130 | 245 | 162 | 276 | 9.60e-49 | 164 |
| Msa0792380 | AT4G17460.1 | 40.408 | 245 | 132 | 6 | 16 | 247 | 7 | 250 | 3.21e-46 | 156 |
| Msa0792380 | AT2G01430.1 | 46.584 | 161 | 73 | 5 | 94 | 245 | 93 | 249 | 8.41e-39 | 137 |
| Msa0792380 | AT1G70920.1 | 46.667 | 150 | 67 | 2 | 106 | 253 | 44 | 182 | 1.97e-34 | 124 |
| Msa0792380 | AT1G70920.2 | 46.667 | 150 | 67 | 2 | 106 | 253 | 14 | 152 | 2.28e-34 | 122 |
| Msa0792380 | AT5G06710.4 | 60.000 | 85 | 30 | 2 | 101 | 182 | 158 | 241 | 1.38e-23 | 97.1 |
| Msa0792380 | AT2G01430.2 | 46.465 | 99 | 44 | 3 | 93 | 182 | 92 | 190 | 3.70e-20 | 86.7 |
| Msa0792380 | AT3G01470.1 | 46.316 | 95 | 44 | 1 | 129 | 216 | 66 | 160 | 1.84e-17 | 80.5 |
| Msa0792380 | AT1G26960.1 | 40.650 | 123 | 67 | 3 | 126 | 246 | 64 | 182 | 6.55e-17 | 78.6 |
| Msa0792380 | AT1G69780.1 | 47.368 | 95 | 48 | 1 | 126 | 218 | 78 | 172 | 6.65e-17 | 79.3 |
| Msa0792380 | AT2G22430.1 | 38.686 | 137 | 71 | 3 | 95 | 221 | 23 | 156 | 3.32e-16 | 77.4 |
| Msa0792380 | AT5G15150.1 | 37.086 | 151 | 82 | 3 | 122 | 261 | 102 | 250 | 3.39e-16 | 77.4 |
| Msa0792380 | AT4G40060.1 | 43.810 | 105 | 55 | 1 | 121 | 221 | 49 | 153 | 8.63e-16 | 76.3 |
| Msa0792380 | AT5G65310.1 | 44.444 | 99 | 48 | 1 | 131 | 222 | 72 | 170 | 1.87e-15 | 75.5 |
| Msa0792380 | AT5G65310.2 | 44.444 | 99 | 48 | 1 | 131 | 222 | 54 | 152 | 2.46e-15 | 74.7 |
| Msa0792380 | AT1G27045.1 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 3.78e-15 | 73.2 |
| Msa0792380 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 131 | 196 | 17 | 82 | 4.71e-15 | 72.0 |
| Msa0792380 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 5.25e-15 | 72.0 |
| Msa0792380 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 5.25e-15 | 72.0 |
| Msa0792380 | AT1G27045.4 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 5.29e-15 | 73.2 |
| Msa0792380 | AT2G36610.1 | 42.157 | 102 | 51 | 1 | 126 | 219 | 66 | 167 | 1.21e-14 | 70.9 |
| Msa0792380 | AT3G01220.1 | 42.593 | 108 | 51 | 2 | 122 | 218 | 74 | 181 | 1.28e-14 | 72.8 |
| Msa0792380 | AT5G03790.1 | 40.449 | 89 | 53 | 0 | 131 | 219 | 77 | 165 | 3.27e-13 | 67.8 |
| Msa0792380 | AT2G46680.2 | 43.529 | 85 | 48 | 0 | 134 | 218 | 35 | 119 | 3.49e-13 | 68.2 |
| Msa0792380 | AT2G46680.1 | 43.529 | 85 | 48 | 0 | 134 | 218 | 35 | 119 | 4.10e-13 | 68.2 |
| Msa0792380 | AT5G03790.2 | 36.207 | 116 | 68 | 2 | 131 | 240 | 77 | 192 | 2.92e-12 | 64.3 |
| Msa0792380 | AT2G18550.1 | 37.864 | 103 | 63 | 1 | 115 | 217 | 46 | 147 | 1.33e-11 | 63.2 |
| Msa0792380 | AT3G61890.1 | 40.000 | 95 | 43 | 1 | 134 | 214 | 33 | 127 | 7.11e-11 | 61.2 |
Find 66 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAACAACATTGCTTAT+TGG | 0.141245 | 5_3:-3584832 | Msa0792380:CDS |
| GAAAATGTTGATTGATTATT+AGG | 0.148058 | 5_3:+3587021 | None:intergenic |
| TGCTGGAATCTTCATATAAA+AGG | 0.190194 | 5_3:+3584918 | None:intergenic |
| TCTTCACTCTCTTCCTTTGA+TGG | 0.194879 | 5_3:+3586656 | None:intergenic |
| ACATTTCCTATCCTTGTAAT+TGG | 0.209590 | 5_3:+3586473 | None:intergenic |
| AAAACCTTGAAGAAAATTAT+TGG | 0.218253 | 5_3:+3586867 | None:intergenic |
| GTGAGCCTAAGTTTCTTCCT+TGG | 0.317530 | 5_3:+3586434 | None:intergenic |
| AAAACAACAATCAAAAGTTT+TGG | 0.344899 | 5_3:-3586411 | Msa0792380:CDS |
| AAATCCATCAAAATGCATTA+AGG | 0.347365 | 5_3:-3586702 | Msa0792380:CDS |
| TTGTAGGTTGCAATATTCTT+TGG | 0.352214 | 5_3:+3586896 | None:intergenic |
| CTTCAACTTGATCTTGATCT+AGG | 0.366943 | 5_3:-3586788 | Msa0792380:CDS |
| TGAGCCTAAGTTTCTTCCTT+GGG | 0.367322 | 5_3:+3586435 | None:intergenic |
| GGAGAGTGGTGAGGAATTTG+AGG | 0.383101 | 5_3:-3586513 | Msa0792380:CDS |
| ACCACTCTCCTTCCTGATGC+TGG | 0.385112 | 5_3:+3586526 | None:intergenic |
| GCTTATCCAATGCTTACATT+AGG | 0.396378 | 5_3:-3586680 | Msa0792380:CDS |
| AAATTATTGGAGGAGCTTGT+AGG | 0.401643 | 5_3:+3586880 | None:intergenic |
| TAGAGGTGTGGTTTCAAAAT+CGG | 0.417824 | 5_3:-3585636 | Msa0792380:CDS |
| TTGATGAAAATCGGCTTAGA+AGG | 0.425528 | 5_3:-3584612 | Msa0792380:three_prime_UTR |
| TGTGTTATGTTGATGAAAAT+CGG | 0.433278 | 5_3:-3584621 | Msa0792380:three_prime_UTR |
| TTTCAAATTCCACCAGCATC+AGG | 0.453960 | 5_3:-3586538 | Msa0792380:CDS |
| AGCAAATAAGCTGAATCTGC+AGG | 0.462898 | 5_3:-3585668 | Msa0792380:CDS |
| ATTGATTATTAGGATTTAGC+GGG | 0.471111 | 5_3:+3587031 | None:intergenic |
| CCTTCGTGCGAGACAATTTG+TGG | 0.481936 | 5_3:-3584877 | Msa0792380:CDS |
| AAGCAATGTTGTTGAGGGTA+AGG | 0.485816 | 5_3:+3584837 | None:intergenic |
| TATAAACACGAGTTTATAAG+TGG | 0.489216 | 5_3:+3584578 | None:intergenic |
| GCTGGAATCTTCATATAAAA+GGG | 0.492378 | 5_3:+3584919 | None:intergenic |
| ATAGGAAATGTTGATAAAGA+TGG | 0.494478 | 5_3:-3586461 | Msa0792380:CDS |
| GACATATATTTGATATAGAT+CGG | 0.499381 | 5_3:-3584707 | Msa0792380:three_prime_UTR |
| GATGGTCCTAATGTAAGCAT+TGG | 0.505729 | 5_3:+3586674 | None:intergenic |
| GCCAATAAGCAATGTTGTTG+AGG | 0.507378 | 5_3:+3584831 | None:intergenic |
| GGTTTCAAAATCGGAGAGCC+AGG | 0.511878 | 5_3:-3585627 | Msa0792380:intron |
| GGAGAACAAGAAGTTGCAAA+AGG | 0.515455 | 5_3:-3584983 | Msa0792380:CDS |
| GATCATCAAAATGATCATGA+AGG | 0.517966 | 5_3:+3586759 | None:intergenic |
| CCAATAAGCAATGTTGTTGA+GGG | 0.519543 | 5_3:+3584832 | None:intergenic |
| CACAAATTGTCTCGCACGAA+GGG | 0.524067 | 5_3:+3584878 | None:intergenic |
| AGAGCATTCTACTCTTAATC+CGG | 0.524461 | 5_3:-3586375 | Msa0792380:intron |
| AAGGTGCCAATTACAAGGAT+AGG | 0.527337 | 5_3:-3586479 | Msa0792380:CDS |
| CAGAACAAAGCTGAAACAAA+CGG | 0.533275 | 5_3:-3585052 | Msa0792380:CDS |
| GATTGATTATTAGGATTTAG+CGG | 0.536534 | 5_3:+3587030 | None:intergenic |
| GAAATAGGAAATGATAGGAA+TGG | 0.538478 | 5_3:+3586960 | None:intergenic |
| ATTTGAGGTAGAGATAGAAA+AGG | 0.543575 | 5_3:-3586498 | Msa0792380:CDS |
| ACTCTCCTTCCTGATGCTGG+TGG | 0.545711 | 5_3:+3586529 | None:intergenic |
| TAGAAAAGGTGCCAATTACA+AGG | 0.547476 | 5_3:-3586484 | Msa0792380:CDS |
| ATCAAGTTGAAGCCATGTGT+TGG | 0.549755 | 5_3:+3586799 | None:intergenic |
| GTAGCCCAAGGAAGAAACTT+AGG | 0.555898 | 5_3:-3586439 | Msa0792380:CDS |
| AAGTTGAAGCCATGTGTTGG+AGG | 0.556547 | 5_3:+3586802 | None:intergenic |
| ATCATCAAAATGATCATGAA+GGG | 0.572662 | 5_3:+3586760 | None:intergenic |
| GATGTGAAATAGGAAATGAT+AGG | 0.577447 | 5_3:+3586955 | None:intergenic |
| CTTGCAGAAGTAAATTGAGT+AGG | 0.581739 | 5_3:+3586575 | None:intergenic |
| GCTTACATTAGGACCATCAA+AGG | 0.583436 | 5_3:-3586669 | Msa0792380:CDS |
| TGTCTCGCACGAAGGGCAGA+TGG | 0.584824 | 5_3:+3584885 | None:intergenic |
| ATTTGTGGTGGCAACAACAA+TGG | 0.596806 | 5_3:-3584862 | Msa0792380:CDS |
| CAGATGGTAAGTGTTGCTGC+TGG | 0.599263 | 5_3:+3584901 | None:intergenic |
| ACCTTGAAGAAAATTATTGG+AGG | 0.600954 | 5_3:+3586870 | None:intergenic |
| TTGATGATACCTCCAACACA+TGG | 0.609555 | 5_3:-3586811 | Msa0792380:CDS |
| ACAACATTCAACATCAAAGA+CGG | 0.613762 | 5_3:-3586618 | Msa0792380:CDS |
| AAATTCCACCAGCATCAGGA+AGG | 0.618266 | 5_3:-3586534 | Msa0792380:CDS |
| TCTGCAGGCTAGACAAGTAG+AGG | 0.619659 | 5_3:-3585653 | Msa0792380:CDS |
| TTGATAAAGATGGTAGCCCA+AGG | 0.634722 | 5_3:-3586451 | Msa0792380:CDS |
| TCGTGCGAGACAATTTGTGG+TGG | 0.644683 | 5_3:-3584874 | Msa0792380:CDS |
| ACCAGCATCAGGAAGGAGAG+TGG | 0.645786 | 5_3:-3586527 | Msa0792380:CDS |
| GTGTTGCGAATCTCTAACAG+AGG | 0.648660 | 5_3:-3585004 | Msa0792380:CDS |
| CCACAAATTGTCTCGCACGA+AGG | 0.651452 | 5_3:+3584877 | None:intergenic |
| CATCAGGAAGGAGAGTGGTG+AGG | 0.670590 | 5_3:-3586522 | Msa0792380:CDS |
| AGGCTAGACAAGTAGAGGTG+TGG | 0.674713 | 5_3:-3585648 | Msa0792380:CDS |
| TTGATTATTAGGATTTAGCG+GGG | 0.689645 | 5_3:+3587032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATTAAATTCTA+AGG | + | chr5_3:3585810-3585829 | None:intergenic | 10.0% |
| !!! | ATTTTATTAGAATTAGATCT+TGG | - | chr5_3:3585505-3585524 | Msa0792380:intron | 15.0% |
| !! | AAGTTTATAAAAATTGTTTC+AGG | + | chr5_3:3585715-3585734 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAACTTGTA+CGG | - | chr5_3:3585718-3585737 | Msa0792380:intron | 15.0% |
| !! | AAACAAAGAAGTAAAATATA+TGG | + | chr5_3:3586218-3586237 | None:intergenic | 15.0% |
| !!! | AAAAATCTAGTTTTCTATAA+TGG | - | chr5_3:3586945-3586964 | Msa0792380:five_prime_UTR | 15.0% |
| !!! | GAAAATGTTGATTGATTATT+AGG | + | chr5_3:3584601-3584620 | None:intergenic | 20.0% |
| !! | AAAGTAAATATGAAAAAGAG+AGG | + | chr5_3:3584689-3584708 | None:intergenic | 20.0% |
| !! | AAAACCTTGAAGAAAATTAT+TGG | + | chr5_3:3584755-3584774 | None:intergenic | 20.0% |
| !!! | AAAACAACAATCAAAAGTTT+TGG | - | chr5_3:3585208-3585227 | Msa0792380:intron | 20.0% |
| !! | ATGAGAATATTGATGAATTA+AGG | + | chr5_3:3585272-3585291 | None:intergenic | 20.0% |
| !! | AGTTTCAAAATTTATTCTCT+TGG | - | chr5_3:3585586-3585605 | Msa0792380:intron | 20.0% |
| !! | TTTCAGGAAATTATTTATTC+TGG | + | chr5_3:3585699-3585718 | None:intergenic | 20.0% |
| !!! | GAAACATTTCTAAAAAAATG+AGG | + | chr5_3:3585767-3585786 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAGAAATGTTTC+TGG | - | chr5_3:3585767-3585786 | Msa0792380:intron | 20.0% |
| !! | AAATTTGTAATACATTGGAT+CGG | + | chr5_3:3585853-3585872 | None:intergenic | 20.0% |
| !! | CTACAAAATTTGTAATACAT+TGG | + | chr5_3:3585858-3585877 | None:intergenic | 20.0% |
| !!! | ACTTCTTTGTTTTTTTTTAC+TGG | - | chr5_3:3586226-3586245 | Msa0792380:intron | 20.0% |
| !!! | TCATTTCCATAAAAACTTTT+TGG | - | chr5_3:3586822-3586841 | Msa0792380:exon | 20.0% |
| !!! | ATCAAACCAAAAAGTTTTTA+TGG | + | chr5_3:3586831-3586850 | None:intergenic | 20.0% |
| !! | GACATATATTTGATATAGAT+CGG | - | chr5_3:3586912-3586931 | Msa0792380:five_prime_UTR | 20.0% |
| !!! | TATAGAAAACTAGATTTTTG+TGG | + | chr5_3:3586944-3586963 | None:intergenic | 20.0% |
| ! | ATTGATTATTAGGATTTAGC+GGG | + | chr5_3:3584591-3584610 | None:intergenic | 25.0% |
| ! | GATTGATTATTAGGATTTAG+CGG | + | chr5_3:3584592-3584611 | None:intergenic | 25.0% |
| ! | ATCATCAAAATGATCATGAA+GGG | + | chr5_3:3584862-3584881 | None:intergenic | 25.0% |
| !!! | ATGATCATTTTGATGATCAT+GGG | - | chr5_3:3584865-3584884 | Msa0792380:CDS | 25.0% |
| ! | AAATCCATCAAAATGCATTA+AGG | - | chr5_3:3584917-3584936 | Msa0792380:CDS | 25.0% |
| !! | ATAGGAAATGTTGATAAAGA+TGG | - | chr5_3:3585158-3585177 | Msa0792380:intron | 25.0% |
| ! | ATATTGATGAATTAAGGTAC+CGG | + | chr5_3:3585266-3585285 | None:intergenic | 25.0% |
| ! | CATCAATATTCTCATATCTT+TGG | - | chr5_3:3585277-3585296 | Msa0792380:intron | 25.0% |
| !! | AATATCAAAACAAAAGTACG+TGG | + | chr5_3:3585332-3585351 | None:intergenic | 25.0% |
| ! | ATATATATTGTTAGAGCGAA+AGG | - | chr5_3:3586329-3586348 | Msa0792380:intron | 25.0% |
| ! | ACAAAAAATGTTAACAGCTA+GGG | - | chr5_3:3586420-3586439 | Msa0792380:CDS | 25.0% |
| ! | AGACGTTTAAAAAGTTTAGA+AGG | + | chr5_3:3586461-3586480 | None:intergenic | 25.0% |
| ! | ATACAATTTCACAAAATCTG+AGG | + | chr5_3:3586512-3586531 | None:intergenic | 25.0% |
| !! | TGTGTTATGTTGATGAAAAT+CGG | - | chr5_3:3586998-3587017 | Msa0792380:five_prime_UTR | 25.0% |
| TTGATTATTAGGATTTAGCG+GGG | + | chr5_3:3584590-3584609 | None:intergenic | 30.0% | |
| GAAATAGGAAATGATAGGAA+TGG | + | chr5_3:3584662-3584681 | None:intergenic | 30.0% | |
| GATGTGAAATAGGAAATGAT+AGG | + | chr5_3:3584667-3584686 | None:intergenic | 30.0% | |
| AAAAAGAGAGGATGTGAAAT+AGG | + | chr5_3:3584677-3584696 | None:intergenic | 30.0% | |
| TTGTAGGTTGCAATATTCTT+TGG | + | chr5_3:3584726-3584745 | None:intergenic | 30.0% | |
| ! | TCCTCCAATAATTTTCTTCA+AGG | - | chr5_3:3584748-3584767 | Msa0792380:three_prime_UTR | 30.0% |
| ACCTTGAAGAAAATTATTGG+AGG | + | chr5_3:3584752-3584771 | None:intergenic | 30.0% | |
| GATCATCAAAATGATCATGA+AGG | + | chr5_3:3584863-3584882 | None:intergenic | 30.0% | |
| !! | CATGATCATTTTGATGATCA+TGG | - | chr5_3:3584864-3584883 | Msa0792380:CDS | 30.0% |
| ! | TAAGCCTTAATGCATTTTGA+TGG | + | chr5_3:3584924-3584943 | None:intergenic | 30.0% |
| ACAACATTCAACATCAAAGA+CGG | - | chr5_3:3585001-3585020 | Msa0792380:CDS | 30.0% | |
| ! | ATTTGAGGTAGAGATAGAAA+AGG | - | chr5_3:3585121-3585140 | Msa0792380:intron | 30.0% |
| ACATTTCCTATCCTTGTAAT+TGG | + | chr5_3:3585149-3585168 | None:intergenic | 30.0% | |
| !! | ACAACAATCAAAAGTTTTGG+AGG | - | chr5_3:3585211-3585230 | Msa0792380:intron | 30.0% |
| ! | AAAACAAAAGTACGTGGTAT+AGG | + | chr5_3:3585326-3585345 | None:intergenic | 30.0% |
| TTAGAATTAGATCTTGGTCT+TGG | - | chr5_3:3585511-3585530 | Msa0792380:intron | 30.0% | |
| TATGAAGCAAACTCAATCTA+AGG | + | chr5_3:3585567-3585586 | None:intergenic | 30.0% | |
| ! | TCTCTTGGATTACATTTTCT+AGG | - | chr5_3:3585601-3585620 | Msa0792380:intron | 30.0% |
| ! | ATTTTACCAAACACTTTGGT+GGG | + | chr5_3:3585636-3585655 | None:intergenic | 30.0% |
| ! | CAAGATTTTACCAAACACTT+TGG | + | chr5_3:3585640-3585659 | None:intergenic | 30.0% |
| GGTAAAATCTTGATATTCCT+AGG | - | chr5_3:3585648-3585667 | Msa0792380:CDS | 30.0% | |
| CACAAAAAATGTTAACAGCT+AGG | - | chr5_3:3586419-3586438 | Msa0792380:CDS | 30.0% | |
| AAAGTTTAGAAGGAGGTTTA+GGG | + | chr5_3:3586451-3586470 | None:intergenic | 30.0% | |
| AAAAGTTTAGAAGGAGGTTT+AGG | + | chr5_3:3586452-3586471 | None:intergenic | 30.0% | |
| CGTTTAAAAAGTTTAGAAGG+AGG | + | chr5_3:3586458-3586477 | None:intergenic | 30.0% | |
| TAAGGTAATATGCGATCAAA+GGG | + | chr5_3:3586487-3586506 | None:intergenic | 30.0% | |
| ATAAGGTAATATGCGATCAA+AGG | + | chr5_3:3586488-3586507 | None:intergenic | 30.0% | |
| TTCACAAAATCTGAGGAATA+AGG | + | chr5_3:3586505-3586524 | None:intergenic | 30.0% | |
| GCTGGAATCTTCATATAAAA+GGG | + | chr5_3:3586703-3586722 | None:intergenic | 30.0% | |
| TGCTGGAATCTTCATATAAA+AGG | + | chr5_3:3586704-3586723 | None:intergenic | 30.0% | |
| ! | AGAAAACTAGATTTTTGTGG+TGG | + | chr5_3:3586941-3586960 | None:intergenic | 30.0% |
| AAATTATTGGAGGAGCTTGT+AGG | + | chr5_3:3584742-3584761 | None:intergenic | 35.0% | |
| CTTCAACTTGATCTTGATCT+AGG | - | chr5_3:3584831-3584850 | Msa0792380:CDS | 35.0% | |
| GCTTATCCAATGCTTACATT+AGG | - | chr5_3:3584939-3584958 | Msa0792380:CDS | 35.0% | |
| CTTGCAGAAGTAAATTGAGT+AGG | + | chr5_3:3585047-3585066 | None:intergenic | 35.0% | |
| !! | TAGAAAAGGTGCCAATTACA+AGG | - | chr5_3:3585135-3585154 | Msa0792380:intron | 35.0% |
| ! | AGAGCATTCTACTCTTAATC+CGG | - | chr5_3:3585244-3585263 | Msa0792380:intron | 35.0% |
| ! | CACACACAGTATTTTTCTCA+TGG | - | chr5_3:3585407-3585426 | Msa0792380:intron | 35.0% |
| ! | ATTATTCCCACCAAAGTGTT+TGG | - | chr5_3:3585627-3585646 | Msa0792380:intron | 35.0% |
| ! | GATTTTACCAAACACTTTGG+TGG | + | chr5_3:3585637-3585656 | None:intergenic | 35.0% |
| CTTGATATTCCTAGGAAAGT+TGG | - | chr5_3:3585656-3585675 | Msa0792380:CDS | 35.0% | |
| ! | ATATTCCTAGGAAAGTTGGT+AGG | - | chr5_3:3585660-3585679 | Msa0792380:CDS | 35.0% |
| ! | TAGAGGTGTGGTTTCAAAAT+CGG | - | chr5_3:3585983-3586002 | Msa0792380:intron | 35.0% |
| CGATACTATCTTAAAACGCA+CGG | + | chr5_3:3586030-3586049 | None:intergenic | 35.0% | |
| TGCATCATGACAATTGCTAA+TGG | + | chr5_3:3586099-3586118 | None:intergenic | 35.0% | |
| CAGAACAAAGCTGAAACAAA+CGG | - | chr5_3:3586567-3586586 | Msa0792380:CDS | 35.0% | |
| CCAATAAGCAATGTTGTTGA+GGG | + | chr5_3:3586790-3586809 | None:intergenic | 35.0% | |
| !!! | CTAGTTTTCTATAATGGACG+TGG | - | chr5_3:3586951-3586970 | Msa0792380:five_prime_UTR | 35.0% |
| ! | TTGATGAAAATCGGCTTAGA+AGG | - | chr5_3:3587007-3587026 | Msa0792380:five_prime_UTR | 35.0% |
| ! | TTGATGATACCTCCAACACA+TGG | - | chr5_3:3584808-3584827 | Msa0792380:CDS | 40.0% |
| !! | ATCAAGTTGAAGCCATGTGT+TGG | + | chr5_3:3584823-3584842 | None:intergenic | 40.0% |
| GATGGTCCTAATGTAAGCAT+TGG | + | chr5_3:3584948-3584967 | None:intergenic | 40.0% | |
| GCTTACATTAGGACCATCAA+AGG | - | chr5_3:3584950-3584969 | Msa0792380:CDS | 40.0% | |
| TCTTCACTCTCTTCCTTTGA+TGG | + | chr5_3:3584966-3584985 | None:intergenic | 40.0% | |
| TTTCAAATTCCACCAGCATC+AGG | - | chr5_3:3585081-3585100 | Msa0792380:intron | 40.0% | |
| ! | AAGGTGCCAATTACAAGGAT+AGG | - | chr5_3:3585140-3585159 | Msa0792380:intron | 40.0% |
| TTGATAAAGATGGTAGCCCA+AGG | - | chr5_3:3585168-3585187 | Msa0792380:intron | 40.0% | |
| TGAGCCTAAGTTTCTTCCTT+GGG | + | chr5_3:3585187-3585206 | None:intergenic | 40.0% | |
| ! | TGGTCTTGGTTGATTGTGTT+TGG | - | chr5_3:3585525-3585544 | Msa0792380:intron | 40.0% |
| ! | TCTAAGGTGTGTTTGTGTCA+AGG | + | chr5_3:3585794-3585813 | None:intergenic | 40.0% |
| AGCAAATAAGCTGAATCTGC+AGG | - | chr5_3:3585951-3585970 | Msa0792380:intron | 40.0% | |
| GCGAAAGGAGAAAACTTAGA+TGG | - | chr5_3:3586344-3586363 | Msa0792380:intron | 40.0% | |
| AGGAGAAAACTTAGATGGCA+CGG | - | chr5_3:3586349-3586368 | Msa0792380:intron | 40.0% | |
| TATTCTCTACGTGCGCAATA+TGG | + | chr5_3:3586386-3586405 | None:intergenic | 40.0% | |
| GGAGAACAAGAAGTTGCAAA+AGG | - | chr5_3:3586636-3586655 | Msa0792380:CDS | 40.0% | |
| ATTTGTGGTGGCAACAACAA+TGG | - | chr5_3:3586757-3586776 | Msa0792380:CDS | 40.0% | |
| AAGCAATGTTGTTGAGGGTA+AGG | + | chr5_3:3586785-3586804 | None:intergenic | 40.0% | |
| CCCTCAACAACATTGCTTAT+TGG | - | chr5_3:3586787-3586806 | Msa0792380:CDS | 40.0% | |
| GCCAATAAGCAATGTTGTTG+AGG | + | chr5_3:3586791-3586810 | None:intergenic | 40.0% | |
| AAGTTGAAGCCATGTGTTGG+AGG | + | chr5_3:3584820-3584839 | None:intergenic | 45.0% | |
| AAATTCCACCAGCATCAGGA+AGG | - | chr5_3:3585085-3585104 | Msa0792380:intron | 45.0% | |
| GTAGCCCAAGGAAGAAACTT+AGG | - | chr5_3:3585180-3585199 | Msa0792380:intron | 45.0% | |
| GTGAGCCTAAGTTTCTTCCT+TGG | + | chr5_3:3585188-3585207 | None:intergenic | 45.0% | |
| ACACACCTACCAACTTTCCT+AGG | + | chr5_3:3585668-3585687 | None:intergenic | 45.0% | |
| GTGTTGCGAATCTCTAACAG+AGG | - | chr5_3:3586615-3586634 | Msa0792380:CDS | 45.0% | |
| CACAAATTGTCTCGCACGAA+GGG | + | chr5_3:3586744-3586763 | None:intergenic | 45.0% | |
| GGAGAGTGGTGAGGAATTTG+AGG | - | chr5_3:3585106-3585125 | Msa0792380:intron | 50.0% | |
| TCTGCAGGCTAGACAAGTAG+AGG | - | chr5_3:3585966-3585985 | Msa0792380:intron | 50.0% | |
| AGGCTAGACAAGTAGAGGTG+TGG | - | chr5_3:3585971-3585990 | Msa0792380:intron | 50.0% | |
| GGTTTCAAAATCGGAGAGCC+AGG | - | chr5_3:3585992-3586011 | Msa0792380:intron | 50.0% | |
| GCACGGAGCAGTAAATTACC+TGG | + | chr5_3:3586013-3586032 | None:intergenic | 50.0% | |
| ! | CAGATGGTAAGTGTTGCTGC+TGG | + | chr5_3:3586721-3586740 | None:intergenic | 50.0% |
| CCACAAATTGTCTCGCACGA+AGG | + | chr5_3:3586745-3586764 | None:intergenic | 50.0% | |
| CCTTCGTGCGAGACAATTTG+TGG | - | chr5_3:3586742-3586761 | Msa0792380:CDS | 50.0% | |
| TCGTGCGAGACAATTTGTGG+TGG | - | chr5_3:3586745-3586764 | Msa0792380:CDS | 50.0% | |
| ACTCTCCTTCCTGATGCTGG+TGG | + | chr5_3:3585093-3585112 | None:intergenic | 55.0% | |
| ACCAGCATCAGGAAGGAGAG+TGG | - | chr5_3:3585092-3585111 | Msa0792380:intron | 55.0% | |
| ACCACTCTCCTTCCTGATGC+TGG | + | chr5_3:3585096-3585115 | None:intergenic | 55.0% | |
| CATCAGGAAGGAGAGTGGTG+AGG | - | chr5_3:3585097-3585116 | Msa0792380:intron | 55.0% | |
| TGTCTCGCACGAAGGGCAGA+TGG | + | chr5_3:3586737-3586756 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3584579 | 3587062 | 3584579 | ID=Msa0792380;Name=Msa0792380 |
| chr5_3 | mRNA | 3584579 | 3587062 | 3584579 | ID=Msa0792380-mRNA-1;Parent=Msa0792380;Name=Msa0792380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=222|1|1|1|1|1|3|213|274 |
| chr5_3 | exon | 3584579 | 3585071 | 3584579 | ID=Msa0792380-mRNA-1:exon:1575;Parent=Msa0792380-mRNA-1 |
| chr5_3 | exon | 3585628 | 3585707 | 3585628 | ID=Msa0792380-mRNA-1:exon:1574;Parent=Msa0792380-mRNA-1 |
| chr5_3 | exon | 3586376 | 3587062 | 3586376 | ID=Msa0792380-mRNA-1:exon:1573;Parent=Msa0792380-mRNA-1 |
| chr5_3 | five_prime_UTR | 3586841 | 3587062 | 3586841 | ID=Msa0792380-mRNA-1:five_prime_utr;Parent=Msa0792380-mRNA-1 |
| chr5_3 | CDS | 3586376 | 3586840 | 3586376 | ID=Msa0792380-mRNA-1:cds;Parent=Msa0792380-mRNA-1 |
| chr5_3 | CDS | 3585628 | 3585707 | 3585628 | ID=Msa0792380-mRNA-1:cds;Parent=Msa0792380-mRNA-1 |
| chr5_3 | CDS | 3584792 | 3585071 | 3584792 | ID=Msa0792380-mRNA-1:cds;Parent=Msa0792380-mRNA-1 |
| chr5_3 | three_prime_UTR | 3584579 | 3584791 | 3584579 | ID=Msa0792380-mRNA-1:three_prime_utr;Parent=Msa0792380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
