Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307660 | XP_013465933.1 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307660 | sp|P46604|HAT22_ARATH | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 5.85e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0307660 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017680 | Msa0307660 | 0.818468 | 1.929385e-52 | -8.615850e-47 |
| Msa0098030 | Msa0307660 | 0.838108 | 3.498298e-57 | -8.615850e-47 |
| Msa0307660 | Msa0792380 | 0.976733 | 2.150595e-142 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307660 | MtrunA17_Chr1g0151971 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Msa0307660 | MtrunA17_Chr4g0054421 | 72.308 | 130 | 32 | 2 | 118 | 245 | 112 | 239 | 3.12e-60 | 192 |
| Msa0307660 | MtrunA17_Chr5g0400781 | 49.784 | 231 | 101 | 5 | 49 | 272 | 41 | 263 | 2.93e-59 | 189 |
| Msa0307660 | MtrunA17_Chr1g0175651 | 70.079 | 127 | 36 | 1 | 119 | 245 | 142 | 266 | 9.93e-58 | 186 |
| Msa0307660 | MtrunA17_Chr7g0258831 | 69.919 | 123 | 35 | 1 | 124 | 246 | 153 | 273 | 1.65e-56 | 183 |
| Msa0307660 | MtrunA17_Chr3g0135331 | 48.473 | 262 | 111 | 10 | 28 | 271 | 34 | 289 | 2.54e-54 | 177 |
| Msa0307660 | MtrunA17_Chr5g0399491 | 51.892 | 185 | 75 | 5 | 89 | 271 | 96 | 268 | 2.10e-53 | 175 |
| Msa0307660 | MtrunA17_Chr4g0055851 | 52.778 | 180 | 68 | 5 | 89 | 267 | 85 | 248 | 1.77e-52 | 172 |
| Msa0307660 | MtrunA17_Chr2g0308611 | 71.552 | 116 | 31 | 1 | 130 | 245 | 199 | 312 | 2.72e-52 | 173 |
| Msa0307660 | MtrunA17_Chr8g0335131 | 69.565 | 115 | 32 | 2 | 130 | 243 | 145 | 257 | 8.87e-50 | 166 |
| Msa0307660 | MtrunA17_Chr4g0044091 | 47.674 | 172 | 67 | 5 | 85 | 243 | 20 | 181 | 1.55e-41 | 141 |
| Msa0307660 | MtrunA17_Chr2g0299031 | 49.032 | 155 | 75 | 3 | 95 | 249 | 49 | 199 | 5.02e-37 | 130 |
| Msa0307660 | MtrunA17_Chr4g0071411 | 59.292 | 113 | 44 | 2 | 133 | 243 | 90 | 202 | 3.26e-34 | 123 |
| Msa0307660 | MtrunA17_Chr6g0450991 | 51.648 | 91 | 44 | 0 | 128 | 218 | 64 | 154 | 7.83e-21 | 89.7 |
| Msa0307660 | MtrunA17_Chr7g0217111 | 42.991 | 107 | 54 | 1 | 130 | 229 | 79 | 185 | 3.32e-18 | 82.0 |
| Msa0307660 | MtrunA17_Chr3g0119291 | 33.511 | 188 | 78 | 6 | 125 | 273 | 51 | 230 | 4.30e-18 | 81.6 |
| Msa0307660 | MtrunA17_Chr8g0381741 | 45.455 | 121 | 55 | 3 | 105 | 218 | 32 | 148 | 4.74e-18 | 82.4 |
| Msa0307660 | MtrunA17_Chr7g0265521 | 41.748 | 103 | 60 | 0 | 115 | 217 | 47 | 149 | 1.18e-17 | 79.7 |
| Msa0307660 | MtrunA17_Chr5g0416391 | 44.444 | 99 | 53 | 1 | 122 | 218 | 66 | 164 | 1.47e-17 | 80.5 |
| Msa0307660 | MtrunA17_Chr8g0362151 | 41.525 | 118 | 58 | 2 | 103 | 218 | 56 | 164 | 2.56e-17 | 79.7 |
| Msa0307660 | MtrunA17_Chr3g0123691 | 46.226 | 106 | 49 | 2 | 121 | 218 | 49 | 154 | 4.12e-17 | 79.3 |
| Msa0307660 | MtrunA17_Chr6g0453021 | 48.936 | 94 | 41 | 1 | 131 | 217 | 96 | 189 | 1.80e-16 | 77.4 |
| Msa0307660 | MtrunA17_Chr8g0362751 | 46.875 | 96 | 44 | 1 | 129 | 217 | 87 | 182 | 3.71e-16 | 76.6 |
| Msa0307660 | MtrunA17_Chr1g0179581 | 43.820 | 89 | 50 | 0 | 125 | 213 | 22 | 110 | 8.47e-16 | 71.6 |
| Msa0307660 | MtrunA17_Chr4g0060031 | 48.864 | 88 | 45 | 0 | 131 | 218 | 95 | 182 | 8.61e-16 | 76.3 |
| Msa0307660 | MtrunA17_Chr5g0415941 | 45.263 | 95 | 45 | 1 | 131 | 218 | 87 | 181 | 4.99e-15 | 73.9 |
| Msa0307660 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 134 | 219 | 41 | 133 | 1.12e-11 | 63.2 |
| Msa0307660 | MtrunA17_Chr5g0403691 | 45.882 | 85 | 46 | 0 | 131 | 215 | 53 | 137 | 2.82e-11 | 62.0 |
| Msa0307660 | MtrunA17_Chr8g0346251 | 36.585 | 123 | 72 | 2 | 94 | 216 | 10 | 126 | 7.96e-11 | 60.8 |
| Msa0307660 | MtrunA17_Chr5g0410711 | 34.375 | 128 | 72 | 2 | 90 | 216 | 61 | 177 | 8.61e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307660 | AT4G37790.1 | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 5.95e-61 | 194 |
| Msa0307660 | AT5G06710.1 | 56.425 | 179 | 63 | 5 | 89 | 258 | 140 | 312 | 1.45e-58 | 190 |
| Msa0307660 | AT2G22800.1 | 45.968 | 248 | 108 | 6 | 1 | 245 | 1 | 225 | 2.90e-54 | 177 |
| Msa0307660 | AT4G16780.1 | 59.589 | 146 | 48 | 4 | 124 | 267 | 121 | 257 | 2.00e-51 | 170 |
| Msa0307660 | AT3G60390.1 | 66.667 | 123 | 40 | 1 | 121 | 243 | 152 | 273 | 9.19e-51 | 169 |
| Msa0307660 | AT5G47370.1 | 46.544 | 217 | 91 | 7 | 65 | 270 | 54 | 256 | 3.06e-49 | 164 |
| Msa0307660 | AT2G44910.1 | 68.376 | 117 | 34 | 2 | 130 | 245 | 162 | 276 | 9.60e-49 | 164 |
| Msa0307660 | AT4G17460.1 | 40.408 | 245 | 132 | 6 | 16 | 247 | 7 | 250 | 3.21e-46 | 156 |
| Msa0307660 | AT2G01430.1 | 46.584 | 161 | 73 | 5 | 94 | 245 | 93 | 249 | 8.41e-39 | 137 |
| Msa0307660 | AT1G70920.1 | 46.667 | 150 | 67 | 2 | 106 | 253 | 44 | 182 | 1.97e-34 | 124 |
| Msa0307660 | AT1G70920.2 | 46.667 | 150 | 67 | 2 | 106 | 253 | 14 | 152 | 2.28e-34 | 122 |
| Msa0307660 | AT5G06710.4 | 60.000 | 85 | 30 | 2 | 101 | 182 | 158 | 241 | 1.38e-23 | 97.1 |
| Msa0307660 | AT2G01430.2 | 46.465 | 99 | 44 | 3 | 93 | 182 | 92 | 190 | 3.70e-20 | 86.7 |
| Msa0307660 | AT3G01470.1 | 46.316 | 95 | 44 | 1 | 129 | 216 | 66 | 160 | 1.84e-17 | 80.5 |
| Msa0307660 | AT1G26960.1 | 40.650 | 123 | 67 | 3 | 126 | 246 | 64 | 182 | 6.55e-17 | 78.6 |
| Msa0307660 | AT1G69780.1 | 47.368 | 95 | 48 | 1 | 126 | 218 | 78 | 172 | 6.65e-17 | 79.3 |
| Msa0307660 | AT2G22430.1 | 38.686 | 137 | 71 | 3 | 95 | 221 | 23 | 156 | 3.32e-16 | 77.4 |
| Msa0307660 | AT5G15150.1 | 37.086 | 151 | 82 | 3 | 122 | 261 | 102 | 250 | 3.39e-16 | 77.4 |
| Msa0307660 | AT4G40060.1 | 43.810 | 105 | 55 | 1 | 121 | 221 | 49 | 153 | 8.63e-16 | 76.3 |
| Msa0307660 | AT5G65310.1 | 44.444 | 99 | 48 | 1 | 131 | 222 | 72 | 170 | 1.87e-15 | 75.5 |
| Msa0307660 | AT5G65310.2 | 44.444 | 99 | 48 | 1 | 131 | 222 | 54 | 152 | 2.46e-15 | 74.7 |
| Msa0307660 | AT1G27045.1 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 3.78e-15 | 73.2 |
| Msa0307660 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 131 | 196 | 17 | 82 | 4.71e-15 | 72.0 |
| Msa0307660 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 5.25e-15 | 72.0 |
| Msa0307660 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 5.25e-15 | 72.0 |
| Msa0307660 | AT1G27045.4 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 5.29e-15 | 73.2 |
| Msa0307660 | AT2G36610.1 | 42.157 | 102 | 51 | 1 | 126 | 219 | 66 | 167 | 1.21e-14 | 70.9 |
| Msa0307660 | AT3G01220.1 | 42.593 | 108 | 51 | 2 | 122 | 218 | 74 | 181 | 1.28e-14 | 72.8 |
| Msa0307660 | AT5G03790.1 | 40.449 | 89 | 53 | 0 | 131 | 219 | 77 | 165 | 3.27e-13 | 67.8 |
| Msa0307660 | AT2G46680.2 | 43.529 | 85 | 48 | 0 | 134 | 218 | 35 | 119 | 3.49e-13 | 68.2 |
| Msa0307660 | AT2G46680.1 | 43.529 | 85 | 48 | 0 | 134 | 218 | 35 | 119 | 4.10e-13 | 68.2 |
| Msa0307660 | AT5G03790.2 | 36.207 | 116 | 68 | 2 | 131 | 240 | 77 | 192 | 2.92e-12 | 64.3 |
| Msa0307660 | AT2G18550.1 | 37.864 | 103 | 63 | 1 | 115 | 217 | 46 | 147 | 1.33e-11 | 63.2 |
| Msa0307660 | AT3G61890.1 | 40.000 | 95 | 43 | 1 | 134 | 214 | 33 | 127 | 7.11e-11 | 61.2 |
Find 66 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAACAACATTGCTTAT+TGG | 0.141245 | 2_4:+646424 | Msa0307660:CDS |
| GAAAATGTTGATTGATTATT+AGG | 0.148058 | 2_4:-644227 | None:intergenic |
| TGCTGGAATCTTCATATAAA+AGG | 0.190194 | 2_4:-646338 | None:intergenic |
| TCTTCACTCTCTTCCTTTGA+TGG | 0.194879 | 2_4:-644592 | None:intergenic |
| ACATTTCCTATCCTTGTAAT+TGG | 0.209590 | 2_4:-644775 | None:intergenic |
| AAAACCTTGAAGAAAATTAT+TGG | 0.218253 | 2_4:-644381 | None:intergenic |
| GTGAGCCTAAGTTTCTTCCT+TGG | 0.317530 | 2_4:-644814 | None:intergenic |
| AAAACAACAATCAAAAGTTT+TGG | 0.344899 | 2_4:+644837 | Msa0307660:CDS |
| AAATCCATCAAAATGCATTA+AGG | 0.347365 | 2_4:+644546 | Msa0307660:CDS |
| TTGTAGGTTGCAATATTCTT+TGG | 0.352214 | 2_4:-644352 | None:intergenic |
| CTTCAACTTGATCTTGATCT+AGG | 0.366943 | 2_4:+644460 | Msa0307660:CDS |
| TGAGCCTAAGTTTCTTCCTT+GGG | 0.367322 | 2_4:-644813 | None:intergenic |
| GGAGAGTGGTGAGGAATTTG+AGG | 0.383101 | 2_4:+644735 | Msa0307660:CDS |
| ACCACTCTCCTTCCTGATGC+TGG | 0.385112 | 2_4:-644722 | None:intergenic |
| GCTTATCCAATGCTTACATT+AGG | 0.396378 | 2_4:+644568 | Msa0307660:CDS |
| AAATTATTGGAGGAGCTTGT+AGG | 0.401643 | 2_4:-644368 | None:intergenic |
| TAGAGGTGTGGTTTCAAAAT+CGG | 0.417824 | 2_4:+645620 | Msa0307660:CDS |
| TTGATGAAAATCGGCTTAGA+AGG | 0.425528 | 2_4:+646644 | Msa0307660:three_prime_UTR |
| TGTGTTATGTTGATGAAAAT+CGG | 0.433278 | 2_4:+646635 | Msa0307660:three_prime_UTR |
| TTTCAAATTCCACCAGCATC+AGG | 0.453960 | 2_4:+644710 | Msa0307660:CDS |
| AGCAAATAAGCTGAATCTGC+AGG | 0.462898 | 2_4:+645588 | Msa0307660:CDS |
| ATTGATTATTAGGATTTAGC+GGG | 0.471111 | 2_4:-644217 | None:intergenic |
| CCTTCGTGCGAGACAATTTG+TGG | 0.481936 | 2_4:+646379 | Msa0307660:CDS |
| AAGCAATGTTGTTGAGGGTA+AGG | 0.485816 | 2_4:-646419 | None:intergenic |
| TATAAACACGAGTTTATAAG+TGG | 0.489216 | 2_4:-646678 | None:intergenic |
| GCTGGAATCTTCATATAAAA+GGG | 0.492378 | 2_4:-646337 | None:intergenic |
| ATAGGAAATGTTGATAAAGA+TGG | 0.494478 | 2_4:+644787 | Msa0307660:CDS |
| GACATATATTTGATATAGAT+CGG | 0.499381 | 2_4:+646549 | Msa0307660:three_prime_UTR |
| GATGGTCCTAATGTAAGCAT+TGG | 0.505729 | 2_4:-644574 | None:intergenic |
| GCCAATAAGCAATGTTGTTG+AGG | 0.507378 | 2_4:-646425 | None:intergenic |
| GGTTTCAAAATCGGAGAGCC+AGG | 0.511878 | 2_4:+645629 | Msa0307660:CDS |
| GGAGAACAAGAAGTTGCAAA+AGG | 0.515455 | 2_4:+646273 | Msa0307660:CDS |
| GATCATCAAAATGATCATGA+AGG | 0.517966 | 2_4:-644489 | None:intergenic |
| CCAATAAGCAATGTTGTTGA+GGG | 0.519543 | 2_4:-646424 | None:intergenic |
| CACAAATTGTCTCGCACGAA+GGG | 0.524067 | 2_4:-646378 | None:intergenic |
| AGAGCATTCTACTCTTAATC+CGG | 0.524461 | 2_4:+644873 | Msa0307660:CDS |
| AAGGTGCCAATTACAAGGAT+AGG | 0.527337 | 2_4:+644769 | Msa0307660:CDS |
| CAGAACAAAGCTGAAACAAA+CGG | 0.533275 | 2_4:+646204 | Msa0307660:intron |
| GATTGATTATTAGGATTTAG+CGG | 0.536534 | 2_4:-644218 | None:intergenic |
| GAAATAGGAAATGATAGGAA+TGG | 0.538478 | 2_4:-644288 | None:intergenic |
| ATTTGAGGTAGAGATAGAAA+AGG | 0.543575 | 2_4:+644750 | Msa0307660:CDS |
| ACTCTCCTTCCTGATGCTGG+TGG | 0.545711 | 2_4:-644719 | None:intergenic |
| TAGAAAAGGTGCCAATTACA+AGG | 0.547476 | 2_4:+644764 | Msa0307660:CDS |
| ATCAAGTTGAAGCCATGTGT+TGG | 0.549755 | 2_4:-644449 | None:intergenic |
| GTAGCCCAAGGAAGAAACTT+AGG | 0.555898 | 2_4:+644809 | Msa0307660:CDS |
| AAGTTGAAGCCATGTGTTGG+AGG | 0.556547 | 2_4:-644446 | None:intergenic |
| ATCATCAAAATGATCATGAA+GGG | 0.572662 | 2_4:-644488 | None:intergenic |
| GATGTGAAATAGGAAATGAT+AGG | 0.577447 | 2_4:-644293 | None:intergenic |
| CTTGCAGAAGTAAATTGAGT+AGG | 0.581739 | 2_4:-644673 | None:intergenic |
| GCTTACATTAGGACCATCAA+AGG | 0.583436 | 2_4:+644579 | Msa0307660:CDS |
| TGTCTCGCACGAAGGGCAGA+TGG | 0.584824 | 2_4:-646371 | None:intergenic |
| ATTTGTGGTGGCAACAACAA+TGG | 0.596806 | 2_4:+646394 | Msa0307660:CDS |
| CAGATGGTAAGTGTTGCTGC+TGG | 0.599263 | 2_4:-646355 | None:intergenic |
| ACCTTGAAGAAAATTATTGG+AGG | 0.600954 | 2_4:-644378 | None:intergenic |
| TTGATGATACCTCCAACACA+TGG | 0.609555 | 2_4:+644437 | Msa0307660:CDS |
| ACAACATTCAACATCAAAGA+CGG | 0.613762 | 2_4:+644630 | Msa0307660:CDS |
| AAATTCCACCAGCATCAGGA+AGG | 0.618266 | 2_4:+644714 | Msa0307660:CDS |
| TCTGCAGGCTAGACAAGTAG+AGG | 0.619659 | 2_4:+645603 | Msa0307660:CDS |
| TTGATAAAGATGGTAGCCCA+AGG | 0.634722 | 2_4:+644797 | Msa0307660:CDS |
| TCGTGCGAGACAATTTGTGG+TGG | 0.644683 | 2_4:+646382 | Msa0307660:CDS |
| ACCAGCATCAGGAAGGAGAG+TGG | 0.645786 | 2_4:+644721 | Msa0307660:CDS |
| GTGTTGCGAATCTCTAACAG+AGG | 0.648660 | 2_4:+646252 | Msa0307660:CDS |
| CCACAAATTGTCTCGCACGA+AGG | 0.651452 | 2_4:-646379 | None:intergenic |
| CATCAGGAAGGAGAGTGGTG+AGG | 0.670590 | 2_4:+644726 | Msa0307660:CDS |
| AGGCTAGACAAGTAGAGGTG+TGG | 0.674713 | 2_4:+645608 | Msa0307660:CDS |
| TTGATTATTAGGATTTAGCG+GGG | 0.689645 | 2_4:-644216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATTAAATTCTA+AGG | - | chr2_4:645447-645466 | None:intergenic | 10.0% |
| !!! | ATTTTATTAGAATTAGATCT+TGG | + | chr2_4:645142-645161 | Msa0307660:intron | 15.0% |
| !! | AAGTTTATAAAAATTGTTTC+AGG | - | chr2_4:645352-645371 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAACTTGTA+CGG | + | chr2_4:645355-645374 | Msa0307660:intron | 15.0% |
| !! | AAACAAAGAAGTAAAATATA+TGG | - | chr2_4:645855-645874 | None:intergenic | 15.0% |
| !!! | AAAAATCTAGTTTTCTATAA+TGG | + | chr2_4:646582-646601 | Msa0307660:three_prime_UTR | 15.0% |
| !!! | GAAAATGTTGATTGATTATT+AGG | - | chr2_4:644230-644249 | None:intergenic | 20.0% |
| !! | AAAGTAAATATGAAAAAGAG+AGG | - | chr2_4:644318-644337 | None:intergenic | 20.0% |
| !! | AAAACCTTGAAGAAAATTAT+TGG | - | chr2_4:644384-644403 | None:intergenic | 20.0% |
| !!! | AAAACAACAATCAAAAGTTT+TGG | + | chr2_4:644837-644856 | Msa0307660:CDS | 20.0% |
| !! | ATGAGAATATTGATGAATTA+AGG | - | chr2_4:644901-644920 | None:intergenic | 20.0% |
| !! | AGTTTCAAAATTTATTCTCT+TGG | + | chr2_4:645223-645242 | Msa0307660:intron | 20.0% |
| !! | TTTCAGGAAATTATTTATTC+TGG | - | chr2_4:645336-645355 | None:intergenic | 20.0% |
| !!! | GAAACATTTCTAAAAAAATG+AGG | - | chr2_4:645404-645423 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAGAAATGTTTC+TGG | + | chr2_4:645404-645423 | Msa0307660:intron | 20.0% |
| !! | AAATTTGTAATACATTGGAT+CGG | - | chr2_4:645490-645509 | None:intergenic | 20.0% |
| !! | CTACAAAATTTGTAATACAT+TGG | - | chr2_4:645495-645514 | None:intergenic | 20.0% |
| !!! | ACTTCTTTGTTTTTTTTTAC+TGG | + | chr2_4:645863-645882 | Msa0307660:intron | 20.0% |
| !!! | TCATTTCCATAAAAACTTTT+TGG | + | chr2_4:646459-646478 | Msa0307660:CDS | 20.0% |
| !!! | ATCAAACCAAAAAGTTTTTA+TGG | - | chr2_4:646468-646487 | None:intergenic | 20.0% |
| !! | GACATATATTTGATATAGAT+CGG | + | chr2_4:646549-646568 | Msa0307660:three_prime_UTR | 20.0% |
| !!! | TATAGAAAACTAGATTTTTG+TGG | - | chr2_4:646581-646600 | None:intergenic | 20.0% |
| ! | ATTGATTATTAGGATTTAGC+GGG | - | chr2_4:644220-644239 | None:intergenic | 25.0% |
| ! | GATTGATTATTAGGATTTAG+CGG | - | chr2_4:644221-644240 | None:intergenic | 25.0% |
| ! | ATCATCAAAATGATCATGAA+GGG | - | chr2_4:644491-644510 | None:intergenic | 25.0% |
| !!! | ATGATCATTTTGATGATCAT+GGG | + | chr2_4:644494-644513 | Msa0307660:CDS | 25.0% |
| ! | AAATCCATCAAAATGCATTA+AGG | + | chr2_4:644546-644565 | Msa0307660:CDS | 25.0% |
| !! | ATAGGAAATGTTGATAAAGA+TGG | + | chr2_4:644787-644806 | Msa0307660:CDS | 25.0% |
| ! | ATATTGATGAATTAAGGTAC+CGG | - | chr2_4:644895-644914 | None:intergenic | 25.0% |
| ! | CATCAATATTCTCATATCTT+TGG | + | chr2_4:644906-644925 | Msa0307660:intron | 25.0% |
| !! | AATATCAAAACAAAAGTACG+TGG | - | chr2_4:644961-644980 | None:intergenic | 25.0% |
| ! | ATATATATTGTTAGAGCGAA+AGG | + | chr2_4:645966-645985 | Msa0307660:intron | 25.0% |
| ! | ACAAAAAATGTTAACAGCTA+GGG | + | chr2_4:646057-646076 | Msa0307660:intron | 25.0% |
| ! | AGACGTTTAAAAAGTTTAGA+AGG | - | chr2_4:646098-646117 | None:intergenic | 25.0% |
| ! | ATACAATTTCACAAAATCTG+AGG | - | chr2_4:646149-646168 | None:intergenic | 25.0% |
| !! | TGTGTTATGTTGATGAAAAT+CGG | + | chr2_4:646635-646654 | Msa0307660:three_prime_UTR | 25.0% |
| TTGATTATTAGGATTTAGCG+GGG | - | chr2_4:644219-644238 | None:intergenic | 30.0% | |
| GAAATAGGAAATGATAGGAA+TGG | - | chr2_4:644291-644310 | None:intergenic | 30.0% | |
| GATGTGAAATAGGAAATGAT+AGG | - | chr2_4:644296-644315 | None:intergenic | 30.0% | |
| AAAAAGAGAGGATGTGAAAT+AGG | - | chr2_4:644306-644325 | None:intergenic | 30.0% | |
| TTGTAGGTTGCAATATTCTT+TGG | - | chr2_4:644355-644374 | None:intergenic | 30.0% | |
| ! | TCCTCCAATAATTTTCTTCA+AGG | + | chr2_4:644377-644396 | Msa0307660:five_prime_UTR | 30.0% |
| ACCTTGAAGAAAATTATTGG+AGG | - | chr2_4:644381-644400 | None:intergenic | 30.0% | |
| GATCATCAAAATGATCATGA+AGG | - | chr2_4:644492-644511 | None:intergenic | 30.0% | |
| !! | CATGATCATTTTGATGATCA+TGG | + | chr2_4:644493-644512 | Msa0307660:CDS | 30.0% |
| ! | TAAGCCTTAATGCATTTTGA+TGG | - | chr2_4:644553-644572 | None:intergenic | 30.0% |
| ACAACATTCAACATCAAAGA+CGG | + | chr2_4:644630-644649 | Msa0307660:CDS | 30.0% | |
| ! | ATTTGAGGTAGAGATAGAAA+AGG | + | chr2_4:644750-644769 | Msa0307660:CDS | 30.0% |
| ACATTTCCTATCCTTGTAAT+TGG | - | chr2_4:644778-644797 | None:intergenic | 30.0% | |
| !! | ACAACAATCAAAAGTTTTGG+AGG | + | chr2_4:644840-644859 | Msa0307660:CDS | 30.0% |
| ! | AAAACAAAAGTACGTGGTAT+AGG | - | chr2_4:644955-644974 | None:intergenic | 30.0% |
| TTAGAATTAGATCTTGGTCT+TGG | + | chr2_4:645148-645167 | Msa0307660:intron | 30.0% | |
| TATGAAGCAAACTCAATCTA+AGG | - | chr2_4:645204-645223 | None:intergenic | 30.0% | |
| ! | TCTCTTGGATTACATTTTCT+AGG | + | chr2_4:645238-645257 | Msa0307660:intron | 30.0% |
| ! | ATTTTACCAAACACTTTGGT+GGG | - | chr2_4:645273-645292 | None:intergenic | 30.0% |
| ! | CAAGATTTTACCAAACACTT+TGG | - | chr2_4:645277-645296 | None:intergenic | 30.0% |
| GGTAAAATCTTGATATTCCT+AGG | + | chr2_4:645285-645304 | Msa0307660:intron | 30.0% | |
| CACAAAAAATGTTAACAGCT+AGG | + | chr2_4:646056-646075 | Msa0307660:intron | 30.0% | |
| AAAGTTTAGAAGGAGGTTTA+GGG | - | chr2_4:646088-646107 | None:intergenic | 30.0% | |
| AAAAGTTTAGAAGGAGGTTT+AGG | - | chr2_4:646089-646108 | None:intergenic | 30.0% | |
| CGTTTAAAAAGTTTAGAAGG+AGG | - | chr2_4:646095-646114 | None:intergenic | 30.0% | |
| TAAGGTAATATGCGATCAAA+GGG | - | chr2_4:646124-646143 | None:intergenic | 30.0% | |
| ATAAGGTAATATGCGATCAA+AGG | - | chr2_4:646125-646144 | None:intergenic | 30.0% | |
| TTCACAAAATCTGAGGAATA+AGG | - | chr2_4:646142-646161 | None:intergenic | 30.0% | |
| GCTGGAATCTTCATATAAAA+GGG | - | chr2_4:646340-646359 | None:intergenic | 30.0% | |
| TGCTGGAATCTTCATATAAA+AGG | - | chr2_4:646341-646360 | None:intergenic | 30.0% | |
| ! | AGAAAACTAGATTTTTGTGG+TGG | - | chr2_4:646578-646597 | None:intergenic | 30.0% |
| AAATTATTGGAGGAGCTTGT+AGG | - | chr2_4:644371-644390 | None:intergenic | 35.0% | |
| CTTCAACTTGATCTTGATCT+AGG | + | chr2_4:644460-644479 | Msa0307660:CDS | 35.0% | |
| GCTTATCCAATGCTTACATT+AGG | + | chr2_4:644568-644587 | Msa0307660:CDS | 35.0% | |
| CTTGCAGAAGTAAATTGAGT+AGG | - | chr2_4:644676-644695 | None:intergenic | 35.0% | |
| !! | TAGAAAAGGTGCCAATTACA+AGG | + | chr2_4:644764-644783 | Msa0307660:CDS | 35.0% |
| ! | AGAGCATTCTACTCTTAATC+CGG | + | chr2_4:644873-644892 | Msa0307660:CDS | 35.0% |
| ! | CACACACAGTATTTTTCTCA+TGG | + | chr2_4:645044-645063 | Msa0307660:intron | 35.0% |
| ! | ATTATTCCCACCAAAGTGTT+TGG | + | chr2_4:645264-645283 | Msa0307660:intron | 35.0% |
| ! | GATTTTACCAAACACTTTGG+TGG | - | chr2_4:645274-645293 | None:intergenic | 35.0% |
| CTTGATATTCCTAGGAAAGT+TGG | + | chr2_4:645293-645312 | Msa0307660:intron | 35.0% | |
| ! | ATATTCCTAGGAAAGTTGGT+AGG | + | chr2_4:645297-645316 | Msa0307660:intron | 35.0% |
| ! | TAGAGGTGTGGTTTCAAAAT+CGG | + | chr2_4:645620-645639 | Msa0307660:CDS | 35.0% |
| CGATACTATCTTAAAACGCA+CGG | - | chr2_4:645667-645686 | None:intergenic | 35.0% | |
| TGCATCATGACAATTGCTAA+TGG | - | chr2_4:645736-645755 | None:intergenic | 35.0% | |
| CAGAACAAAGCTGAAACAAA+CGG | + | chr2_4:646204-646223 | Msa0307660:intron | 35.0% | |
| CCAATAAGCAATGTTGTTGA+GGG | - | chr2_4:646427-646446 | None:intergenic | 35.0% | |
| !!! | CTAGTTTTCTATAATGGACG+TGG | + | chr2_4:646588-646607 | Msa0307660:three_prime_UTR | 35.0% |
| ! | TTGATGAAAATCGGCTTAGA+AGG | + | chr2_4:646644-646663 | Msa0307660:three_prime_UTR | 35.0% |
| ! | TTGATGATACCTCCAACACA+TGG | + | chr2_4:644437-644456 | Msa0307660:CDS | 40.0% |
| !! | ATCAAGTTGAAGCCATGTGT+TGG | - | chr2_4:644452-644471 | None:intergenic | 40.0% |
| GATGGTCCTAATGTAAGCAT+TGG | - | chr2_4:644577-644596 | None:intergenic | 40.0% | |
| GCTTACATTAGGACCATCAA+AGG | + | chr2_4:644579-644598 | Msa0307660:CDS | 40.0% | |
| TCTTCACTCTCTTCCTTTGA+TGG | - | chr2_4:644595-644614 | None:intergenic | 40.0% | |
| TTTCAAATTCCACCAGCATC+AGG | + | chr2_4:644710-644729 | Msa0307660:CDS | 40.0% | |
| ! | AAGGTGCCAATTACAAGGAT+AGG | + | chr2_4:644769-644788 | Msa0307660:CDS | 40.0% |
| TTGATAAAGATGGTAGCCCA+AGG | + | chr2_4:644797-644816 | Msa0307660:CDS | 40.0% | |
| TGAGCCTAAGTTTCTTCCTT+GGG | - | chr2_4:644816-644835 | None:intergenic | 40.0% | |
| ! | TGGTCTTGGTTGATTGTGTT+TGG | + | chr2_4:645162-645181 | Msa0307660:intron | 40.0% |
| ! | TCTAAGGTGTGTTTGTGTCA+AGG | - | chr2_4:645431-645450 | None:intergenic | 40.0% |
| AGCAAATAAGCTGAATCTGC+AGG | + | chr2_4:645588-645607 | Msa0307660:CDS | 40.0% | |
| GCGAAAGGAGAAAACTTAGA+TGG | + | chr2_4:645981-646000 | Msa0307660:intron | 40.0% | |
| AGGAGAAAACTTAGATGGCA+CGG | + | chr2_4:645986-646005 | Msa0307660:intron | 40.0% | |
| TATTCTCTACGTGCGCAATA+TGG | - | chr2_4:646023-646042 | None:intergenic | 40.0% | |
| GGAGAACAAGAAGTTGCAAA+AGG | + | chr2_4:646273-646292 | Msa0307660:CDS | 40.0% | |
| ATTTGTGGTGGCAACAACAA+TGG | + | chr2_4:646394-646413 | Msa0307660:CDS | 40.0% | |
| AAGCAATGTTGTTGAGGGTA+AGG | - | chr2_4:646422-646441 | None:intergenic | 40.0% | |
| CCCTCAACAACATTGCTTAT+TGG | + | chr2_4:646424-646443 | Msa0307660:CDS | 40.0% | |
| GCCAATAAGCAATGTTGTTG+AGG | - | chr2_4:646428-646447 | None:intergenic | 40.0% | |
| AAGTTGAAGCCATGTGTTGG+AGG | - | chr2_4:644449-644468 | None:intergenic | 45.0% | |
| AAATTCCACCAGCATCAGGA+AGG | + | chr2_4:644714-644733 | Msa0307660:CDS | 45.0% | |
| GTAGCCCAAGGAAGAAACTT+AGG | + | chr2_4:644809-644828 | Msa0307660:CDS | 45.0% | |
| GTGAGCCTAAGTTTCTTCCT+TGG | - | chr2_4:644817-644836 | None:intergenic | 45.0% | |
| ACACACCTACCAACTTTCCT+AGG | - | chr2_4:645305-645324 | None:intergenic | 45.0% | |
| GTGTTGCGAATCTCTAACAG+AGG | + | chr2_4:646252-646271 | Msa0307660:CDS | 45.0% | |
| CACAAATTGTCTCGCACGAA+GGG | - | chr2_4:646381-646400 | None:intergenic | 45.0% | |
| GGAGAGTGGTGAGGAATTTG+AGG | + | chr2_4:644735-644754 | Msa0307660:CDS | 50.0% | |
| TCTGCAGGCTAGACAAGTAG+AGG | + | chr2_4:645603-645622 | Msa0307660:CDS | 50.0% | |
| AGGCTAGACAAGTAGAGGTG+TGG | + | chr2_4:645608-645627 | Msa0307660:CDS | 50.0% | |
| GGTTTCAAAATCGGAGAGCC+AGG | + | chr2_4:645629-645648 | Msa0307660:CDS | 50.0% | |
| GCACGGAGCAGTAAATTACC+TGG | - | chr2_4:645650-645669 | None:intergenic | 50.0% | |
| ! | CAGATGGTAAGTGTTGCTGC+TGG | - | chr2_4:646358-646377 | None:intergenic | 50.0% |
| CCACAAATTGTCTCGCACGA+AGG | - | chr2_4:646382-646401 | None:intergenic | 50.0% | |
| CCTTCGTGCGAGACAATTTG+TGG | + | chr2_4:646379-646398 | Msa0307660:CDS | 50.0% | |
| TCGTGCGAGACAATTTGTGG+TGG | + | chr2_4:646382-646401 | Msa0307660:CDS | 50.0% | |
| ACTCTCCTTCCTGATGCTGG+TGG | - | chr2_4:644722-644741 | None:intergenic | 55.0% | |
| ACCAGCATCAGGAAGGAGAG+TGG | + | chr2_4:644721-644740 | Msa0307660:CDS | 55.0% | |
| ACCACTCTCCTTCCTGATGC+TGG | - | chr2_4:644725-644744 | None:intergenic | 55.0% | |
| CATCAGGAAGGAGAGTGGTG+AGG | + | chr2_4:644726-644745 | Msa0307660:CDS | 55.0% | |
| TGTCTCGCACGAAGGGCAGA+TGG | - | chr2_4:646374-646393 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 644208 | 646699 | 644208 | ID=Msa0307660;Name=Msa0307660 |
| chr2_4 | mRNA | 644208 | 646699 | 644208 | ID=Msa0307660-mRNA-1;Parent=Msa0307660;Name=Msa0307660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=222|1|1|1|1|1|3|213|274 |
| chr2_4 | exon | 644208 | 644894 | 644208 | ID=Msa0307660-mRNA-1:exon:296;Parent=Msa0307660-mRNA-1 |
| chr2_4 | exon | 645571 | 645650 | 645571 | ID=Msa0307660-mRNA-1:exon:297;Parent=Msa0307660-mRNA-1 |
| chr2_4 | exon | 646207 | 646699 | 646207 | ID=Msa0307660-mRNA-1:exon:298;Parent=Msa0307660-mRNA-1 |
| chr2_4 | five_prime_UTR | 644208 | 644429 | 644208 | ID=Msa0307660-mRNA-1:five_prime_utr;Parent=Msa0307660-mRNA-1 |
| chr2_4 | CDS | 644430 | 644894 | 644430 | ID=Msa0307660-mRNA-1:cds;Parent=Msa0307660-mRNA-1 |
| chr2_4 | CDS | 645571 | 645650 | 645571 | ID=Msa0307660-mRNA-1:cds;Parent=Msa0307660-mRNA-1 |
| chr2_4 | CDS | 646207 | 646486 | 646207 | ID=Msa0307660-mRNA-1:cds;Parent=Msa0307660-mRNA-1 |
| chr2_4 | three_prime_UTR | 646487 | 646699 | 646487 | ID=Msa0307660-mRNA-1:three_prime_utr;Parent=Msa0307660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
