Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098030 | XP_013465933.1 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098030 | sp|P46604|HAT22_ARATH | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 6.38e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098030 | A0A072VD79 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0098030 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017680 | Msa0098030 | 0.871994 | 4.468833e-67 | -8.615850e-47 |
| Msa0098030 | Msa0307660 | 0.838108 | 3.498298e-57 | -8.615850e-47 |
| Msa0098030 | Msa0792380 | 0.818951 | 1.499547e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098030 | MtrunA17_Chr1g0151971 | 93.015 | 272 | 17 | 2 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Msa0098030 | MtrunA17_Chr4g0054421 | 72.308 | 130 | 32 | 2 | 118 | 245 | 112 | 239 | 3.63e-60 | 192 |
| Msa0098030 | MtrunA17_Chr5g0400781 | 50.431 | 232 | 98 | 5 | 49 | 272 | 41 | 263 | 8.83e-60 | 191 |
| Msa0098030 | MtrunA17_Chr1g0175651 | 70.079 | 127 | 36 | 1 | 119 | 245 | 142 | 266 | 1.04e-57 | 186 |
| Msa0098030 | MtrunA17_Chr7g0258831 | 69.919 | 123 | 35 | 1 | 124 | 246 | 153 | 273 | 1.88e-56 | 183 |
| Msa0098030 | MtrunA17_Chr3g0135331 | 48.473 | 262 | 111 | 10 | 28 | 271 | 34 | 289 | 1.34e-53 | 176 |
| Msa0098030 | MtrunA17_Chr5g0399491 | 51.892 | 185 | 75 | 5 | 89 | 271 | 96 | 268 | 1.89e-53 | 175 |
| Msa0098030 | MtrunA17_Chr4g0055851 | 52.778 | 180 | 68 | 5 | 89 | 267 | 85 | 248 | 1.20e-52 | 172 |
| Msa0098030 | MtrunA17_Chr2g0308611 | 71.552 | 116 | 31 | 1 | 130 | 245 | 199 | 312 | 2.78e-52 | 173 |
| Msa0098030 | MtrunA17_Chr8g0335131 | 69.565 | 115 | 32 | 2 | 130 | 243 | 145 | 257 | 1.05e-49 | 166 |
| Msa0098030 | MtrunA17_Chr4g0044091 | 47.674 | 172 | 67 | 5 | 85 | 243 | 20 | 181 | 1.41e-41 | 142 |
| Msa0098030 | MtrunA17_Chr2g0299031 | 49.032 | 155 | 75 | 3 | 95 | 249 | 49 | 199 | 6.09e-37 | 130 |
| Msa0098030 | MtrunA17_Chr4g0071411 | 59.292 | 113 | 44 | 2 | 133 | 243 | 90 | 202 | 2.47e-34 | 124 |
| Msa0098030 | MtrunA17_Chr6g0450991 | 51.648 | 91 | 44 | 0 | 128 | 218 | 64 | 154 | 7.15e-21 | 89.7 |
| Msa0098030 | MtrunA17_Chr7g0217111 | 42.991 | 107 | 54 | 1 | 130 | 229 | 79 | 185 | 2.48e-18 | 82.4 |
| Msa0098030 | MtrunA17_Chr7g0265521 | 41.346 | 104 | 61 | 0 | 115 | 218 | 47 | 150 | 4.83e-18 | 80.9 |
| Msa0098030 | MtrunA17_Chr8g0381741 | 44.628 | 121 | 56 | 3 | 105 | 218 | 32 | 148 | 1.87e-17 | 80.5 |
| Msa0098030 | MtrunA17_Chr3g0119291 | 45.631 | 103 | 47 | 2 | 125 | 218 | 51 | 153 | 4.75e-17 | 78.6 |
| Msa0098030 | MtrunA17_Chr5g0416391 | 43.434 | 99 | 54 | 1 | 122 | 218 | 66 | 164 | 5.15e-17 | 79.0 |
| Msa0098030 | MtrunA17_Chr8g0362151 | 40.678 | 118 | 59 | 2 | 103 | 218 | 56 | 164 | 9.13e-17 | 78.2 |
| Msa0098030 | MtrunA17_Chr3g0123691 | 47.368 | 95 | 43 | 1 | 131 | 218 | 60 | 154 | 1.46e-16 | 77.8 |
| Msa0098030 | MtrunA17_Chr1g0179581 | 44.944 | 89 | 49 | 0 | 125 | 213 | 22 | 110 | 1.90e-16 | 73.6 |
| Msa0098030 | MtrunA17_Chr8g0362751 | 46.875 | 96 | 44 | 1 | 129 | 217 | 87 | 182 | 3.08e-16 | 76.6 |
| Msa0098030 | MtrunA17_Chr6g0453021 | 47.872 | 94 | 42 | 1 | 131 | 217 | 96 | 189 | 5.98e-16 | 75.9 |
| Msa0098030 | MtrunA17_Chr4g0060031 | 48.864 | 88 | 45 | 0 | 131 | 218 | 95 | 182 | 8.36e-16 | 76.3 |
| Msa0098030 | MtrunA17_Chr5g0415941 | 45.263 | 95 | 45 | 1 | 131 | 218 | 87 | 181 | 4.27e-15 | 73.9 |
| Msa0098030 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 134 | 219 | 41 | 133 | 2.79e-11 | 62.0 |
| Msa0098030 | MtrunA17_Chr5g0403691 | 45.882 | 85 | 46 | 0 | 131 | 215 | 53 | 137 | 3.26e-11 | 61.6 |
| Msa0098030 | MtrunA17_Chr5g0410711 | 34.375 | 128 | 72 | 2 | 90 | 216 | 61 | 177 | 7.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098030 | AT4G37790.1 | 49.398 | 249 | 111 | 7 | 1 | 245 | 1 | 238 | 6.49e-61 | 194 |
| Msa0098030 | AT5G06710.1 | 56.425 | 179 | 63 | 5 | 89 | 258 | 140 | 312 | 1.98e-58 | 189 |
| Msa0098030 | AT2G22800.1 | 45.968 | 248 | 108 | 6 | 1 | 245 | 1 | 225 | 2.66e-54 | 177 |
| Msa0098030 | AT4G16780.1 | 59.589 | 146 | 48 | 4 | 124 | 267 | 121 | 257 | 1.70e-51 | 170 |
| Msa0098030 | AT3G60390.1 | 66.667 | 123 | 40 | 1 | 121 | 243 | 152 | 273 | 1.11e-50 | 169 |
| Msa0098030 | AT5G47370.1 | 46.544 | 217 | 91 | 7 | 65 | 270 | 54 | 256 | 3.80e-49 | 164 |
| Msa0098030 | AT2G44910.1 | 68.376 | 117 | 34 | 2 | 130 | 245 | 162 | 276 | 1.24e-48 | 164 |
| Msa0098030 | AT4G17460.1 | 40.408 | 245 | 132 | 6 | 16 | 247 | 7 | 250 | 4.06e-46 | 156 |
| Msa0098030 | AT2G01430.1 | 46.584 | 161 | 73 | 5 | 94 | 245 | 93 | 249 | 1.73e-38 | 136 |
| Msa0098030 | AT1G70920.1 | 46.667 | 150 | 67 | 2 | 106 | 253 | 44 | 182 | 1.85e-34 | 124 |
| Msa0098030 | AT1G70920.2 | 46.667 | 150 | 67 | 2 | 106 | 253 | 14 | 152 | 2.10e-34 | 122 |
| Msa0098030 | AT5G06710.4 | 54.369 | 103 | 37 | 3 | 89 | 182 | 140 | 241 | 1.75e-23 | 97.1 |
| Msa0098030 | AT2G01430.2 | 46.465 | 99 | 44 | 3 | 93 | 182 | 92 | 190 | 9.34e-20 | 85.5 |
| Msa0098030 | AT3G01470.1 | 46.316 | 95 | 44 | 1 | 129 | 216 | 66 | 160 | 1.74e-17 | 80.5 |
| Msa0098030 | AT1G69780.1 | 46.591 | 88 | 47 | 0 | 131 | 218 | 85 | 172 | 2.43e-16 | 77.8 |
| Msa0098030 | AT1G26960.1 | 39.837 | 123 | 68 | 3 | 126 | 246 | 64 | 182 | 2.99e-16 | 76.6 |
| Msa0098030 | AT5G15150.1 | 38.462 | 143 | 75 | 3 | 122 | 253 | 102 | 242 | 8.08e-16 | 76.3 |
| Msa0098030 | AT2G22430.1 | 37.956 | 137 | 72 | 3 | 95 | 221 | 23 | 156 | 1.12e-15 | 75.9 |
| Msa0098030 | AT4G40060.1 | 42.857 | 105 | 56 | 1 | 121 | 221 | 49 | 153 | 3.06e-15 | 74.3 |
| Msa0098030 | AT5G65310.1 | 43.434 | 99 | 49 | 1 | 131 | 222 | 72 | 170 | 6.49e-15 | 73.9 |
| Msa0098030 | AT5G65310.2 | 43.434 | 99 | 49 | 1 | 131 | 222 | 54 | 152 | 7.88e-15 | 73.2 |
| Msa0098030 | AT1G27045.1 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 8.66e-15 | 72.0 |
| Msa0098030 | AT1G27045.2 | 57.576 | 66 | 28 | 0 | 131 | 196 | 17 | 82 | 1.10e-14 | 70.9 |
| Msa0098030 | AT1G27045.5 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 1.23e-14 | 70.9 |
| Msa0098030 | AT1G27045.3 | 57.576 | 66 | 28 | 0 | 131 | 196 | 25 | 90 | 1.23e-14 | 70.9 |
| Msa0098030 | AT1G27045.4 | 50.000 | 88 | 44 | 0 | 131 | 218 | 68 | 155 | 1.30e-14 | 72.0 |
| Msa0098030 | AT2G36610.1 | 41.176 | 102 | 52 | 1 | 126 | 219 | 66 | 167 | 4.54e-14 | 69.3 |
| Msa0098030 | AT3G01220.1 | 41.667 | 108 | 52 | 2 | 122 | 218 | 74 | 181 | 4.64e-14 | 71.2 |
| Msa0098030 | AT5G03790.1 | 40.449 | 89 | 53 | 0 | 131 | 219 | 77 | 165 | 3.24e-13 | 67.8 |
| Msa0098030 | AT2G46680.2 | 42.353 | 85 | 49 | 0 | 134 | 218 | 35 | 119 | 1.45e-12 | 66.2 |
| Msa0098030 | AT2G46680.1 | 42.353 | 85 | 49 | 0 | 134 | 218 | 35 | 119 | 1.58e-12 | 66.2 |
| Msa0098030 | AT5G03790.2 | 36.207 | 116 | 68 | 2 | 131 | 240 | 77 | 192 | 3.19e-12 | 64.3 |
| Msa0098030 | AT2G18550.1 | 37.864 | 103 | 63 | 1 | 115 | 217 | 46 | 147 | 3.48e-11 | 62.0 |
Find 68 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGAATCTTCATATAAA+AGG | 0.190194 | 1_3:-3906305 | None:intergenic |
| TCTTCACTCTCTTCCTTTGA+TGG | 0.194879 | 1_3:-3904526 | None:intergenic |
| ACATTTCCTATCCTTGTAAT+TGG | 0.209590 | 1_3:-3904709 | None:intergenic |
| AAAACCTTGAAGAAAATTAT+TGG | 0.218253 | 1_3:-3904315 | None:intergenic |
| AGAAAATGTTGATGATTATT+AGG | 0.223772 | 1_3:-3904162 | None:intergenic |
| TGAATTAAGGTACCGGATTA+AGG | 0.242966 | 1_3:-3904819 | None:intergenic |
| CCCTCAACAACATTGCTTAC+TGG | 0.286571 | 1_3:+3906391 | Msa0098030:CDS |
| GTGAGCCTAAGTTTCTTCCT+TGG | 0.317530 | 1_3:-3904748 | None:intergenic |
| AAAACAACAATCAGAAGTTT+TGG | 0.327778 | 1_3:+3904771 | Msa0098030:CDS |
| AAATCCATCAAAATGCATTA+AGG | 0.347365 | 1_3:+3904480 | Msa0098030:CDS |
| TTGTAGGTTGCAATATTCTT+TGG | 0.352214 | 1_3:-3904286 | None:intergenic |
| CTTCAACTTGATCTTGATCT+AGG | 0.366943 | 1_3:+3904394 | Msa0098030:CDS |
| TGAGCCTAAGTTTCTTCCTT+GGG | 0.367322 | 1_3:-3904747 | None:intergenic |
| GGAGAGTGGTGAGGAATTTG+AGG | 0.383101 | 1_3:+3904669 | Msa0098030:CDS |
| ACCACTCTCCTTCCTGATGC+TGG | 0.385112 | 1_3:-3904656 | None:intergenic |
| GCTTATCCAATGCTTACATT+AGG | 0.396378 | 1_3:+3904502 | Msa0098030:CDS |
| AAATTATTGGAGGAGCTTGT+AGG | 0.401643 | 1_3:-3904302 | None:intergenic |
| TAGAGGTGTGGTTTCAAAAT+CGG | 0.417824 | 1_3:+3905580 | Msa0098030:CDS |
| TTGATGAAAATCGGCTTAGA+AGG | 0.425528 | 1_3:+3906611 | Msa0098030:three_prime_UTR |
| TGTGTTATGTTGATGAAAAT+CGG | 0.433278 | 1_3:+3906602 | Msa0098030:three_prime_UTR |
| TTTCAAATTCCACCAGCATC+AGG | 0.453960 | 1_3:+3904644 | Msa0098030:CDS |
| GATGATTATTAGGATTTAGT+GGG | 0.457094 | 1_3:-3904152 | None:intergenic |
| GAATTAAGGTACCGGATTAA+GGG | 0.460842 | 1_3:-3904818 | None:intergenic |
| TGATGATTATTAGGATTTAG+TGG | 0.461554 | 1_3:-3904153 | None:intergenic |
| AGCAAATAAGCTGAATCTGC+AGG | 0.462898 | 1_3:+3905548 | Msa0098030:CDS |
| CCTTCGTGCGAGACAATTTG+TGG | 0.481936 | 1_3:+3906346 | Msa0098030:CDS |
| AAGCAATGTTGTTGAGGGTA+AGG | 0.487754 | 1_3:-3906386 | None:intergenic |
| TATAAACACGAGTTTATAAG+TGG | 0.489216 | 1_3:-3906645 | None:intergenic |
| GCTGGAATCTTCATATAAAA+GGG | 0.492378 | 1_3:-3906304 | None:intergenic |
| ATAGGAAATGTTGATAAAGA+TGG | 0.494478 | 1_3:+3904721 | Msa0098030:CDS |
| GACATATATTTGATATAGAT+CGG | 0.499381 | 1_3:+3906516 | Msa0098030:three_prime_UTR |
| GATGGTCCTAATGTAAGCAT+TGG | 0.505729 | 1_3:-3904508 | None:intergenic |
| GGTTTCAAAATCGGAGAGCC+AGG | 0.511878 | 1_3:+3905589 | Msa0098030:CDS |
| GGAGAACAAGAAGTTGCAAA+AGG | 0.515455 | 1_3:+3906240 | Msa0098030:CDS |
| GATCATCAAAATGATCATGA+AGG | 0.517966 | 1_3:-3904423 | None:intergenic |
| CCAGTAAGCAATGTTGTTGA+GGG | 0.519543 | 1_3:-3906391 | None:intergenic |
| CACAAATTGTCTCGCACGAA+GGG | 0.524067 | 1_3:-3906345 | None:intergenic |
| AAGGTGCCAATTACAAGGAT+AGG | 0.527337 | 1_3:+3904703 | Msa0098030:CDS |
| AGAGCATTCTACCCTTAATC+CGG | 0.531955 | 1_3:+3904807 | Msa0098030:CDS |
| GCCAGTAAGCAATGTTGTTG+AGG | 0.532003 | 1_3:-3906392 | None:intergenic |
| CAGAACAAAGCTGAAACAAA+CGG | 0.533275 | 1_3:+3906171 | Msa0098030:intron |
| GAAATAGGAAATGATAGGAA+TGG | 0.538478 | 1_3:-3904222 | None:intergenic |
| ATTTGAGGTAGAGATAGAAA+AGG | 0.543575 | 1_3:+3904684 | Msa0098030:CDS |
| ACTCTCCTTCCTGATGCTGG+TGG | 0.545711 | 1_3:-3904653 | None:intergenic |
| TAGAAAAGGTGCCAATTACA+AGG | 0.547476 | 1_3:+3904698 | Msa0098030:CDS |
| ATCAAGTTGAAGCCATGTGT+TGG | 0.549755 | 1_3:-3904383 | None:intergenic |
| GTAGCCCAAGGAAGAAACTT+AGG | 0.555898 | 1_3:+3904743 | Msa0098030:CDS |
| AAGTTGAAGCCATGTGTTGG+AGG | 0.556547 | 1_3:-3904380 | None:intergenic |
| ATCATCAAAATGATCATGAA+GGG | 0.572662 | 1_3:-3904422 | None:intergenic |
| GATGTGAAATAGGAAATGAT+AGG | 0.577447 | 1_3:-3904227 | None:intergenic |
| CTTGCAGAAGTAAATTGAGT+AGG | 0.581739 | 1_3:-3904607 | None:intergenic |
| GCTTACATTAGGACCATCAA+AGG | 0.583436 | 1_3:+3904513 | Msa0098030:CDS |
| TGTCTCGCACGAAGGGCAGA+TGG | 0.584824 | 1_3:-3906338 | None:intergenic |
| ATGATTATTAGGATTTAGTG+GGG | 0.587890 | 1_3:-3904151 | None:intergenic |
| ATTTGTGGTGGCAACAACAA+TGG | 0.596806 | 1_3:+3906361 | Msa0098030:CDS |
| CAGATGGTAAGTGTTGCTGC+TGG | 0.599263 | 1_3:-3906322 | None:intergenic |
| ACCTTGAAGAAAATTATTGG+AGG | 0.600954 | 1_3:-3904312 | None:intergenic |
| TTGATGATACCTCCAACACA+TGG | 0.609555 | 1_3:+3904371 | Msa0098030:CDS |
| ACAACATTCAACATCAAAGA+CGG | 0.613762 | 1_3:+3904564 | Msa0098030:CDS |
| AAATTCCACCAGCATCAGGA+AGG | 0.618266 | 1_3:+3904648 | Msa0098030:CDS |
| TCTGCAGGCTAGACAAGTAG+AGG | 0.619659 | 1_3:+3905563 | Msa0098030:CDS |
| TTGATAAAGATGGTAGCCCA+AGG | 0.634722 | 1_3:+3904731 | Msa0098030:CDS |
| TCGTGCGAGACAATTTGTGG+TGG | 0.644683 | 1_3:+3906349 | Msa0098030:CDS |
| ACCAGCATCAGGAAGGAGAG+TGG | 0.645786 | 1_3:+3904655 | Msa0098030:CDS |
| GTGTTGCGAATCTCTAACAG+AGG | 0.648660 | 1_3:+3906219 | Msa0098030:CDS |
| CCACAAATTGTCTCGCACGA+AGG | 0.651452 | 1_3:-3906346 | None:intergenic |
| CATCAGGAAGGAGAGTGGTG+AGG | 0.670590 | 1_3:+3904660 | Msa0098030:CDS |
| AGGCTAGACAAGTAGAGGTG+TGG | 0.674713 | 1_3:+3905568 | Msa0098030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATTAAATTCTA+AGG | - | chr1_3:3905407-3905426 | None:intergenic | 10.0% |
| !!! | ATTTTATTAGAATTAGATCT+TGG | + | chr1_3:3905102-3905121 | Msa0098030:intron | 15.0% |
| !! | AAGTTTATAAAAATTGTTTC+AGG | - | chr1_3:3905312-3905331 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAACTTGTA+CGG | + | chr1_3:3905315-3905334 | Msa0098030:intron | 15.0% |
| !! | AAACAAAGAAGTAAAATATA+TGG | - | chr1_3:3905820-3905839 | None:intergenic | 15.0% |
| !!! | AAAAATCTAGTTTTCTATAA+TGG | + | chr1_3:3906549-3906568 | Msa0098030:three_prime_UTR | 15.0% |
| !!! | AGAAAATGTTGATGATTATT+AGG | - | chr1_3:3904165-3904184 | None:intergenic | 20.0% |
| !! | AAAGTAAATATGAAAAAGAG+AGG | - | chr1_3:3904252-3904271 | None:intergenic | 20.0% |
| !! | AAAACCTTGAAGAAAATTAT+TGG | - | chr1_3:3904318-3904337 | None:intergenic | 20.0% |
| !! | ATGAGAATATTGATGAATTA+AGG | - | chr1_3:3904835-3904854 | None:intergenic | 20.0% |
| !! | AGTTTCAAAATTTATTCTCT+TGG | + | chr1_3:3905183-3905202 | Msa0098030:intron | 20.0% |
| !! | TTTCAGGAAATTATTTATTC+TGG | - | chr1_3:3905296-3905315 | None:intergenic | 20.0% |
| !!! | GAAACATTTCTAAAAAAATG+AGG | - | chr1_3:3905364-3905383 | None:intergenic | 20.0% |
| !!! | CATTTTTTTAGAAATGTTTC+TGG | + | chr1_3:3905364-3905383 | Msa0098030:intron | 20.0% |
| !! | AAATTTGTAATACATTGGAT+TGG | - | chr1_3:3905450-3905469 | None:intergenic | 20.0% |
| !! | CTACAAAATTTGTAATACAT+TGG | - | chr1_3:3905455-3905474 | None:intergenic | 20.0% |
| !!! | ACTTCTTTGTTTTTTTTTAC+TGG | + | chr1_3:3905828-3905847 | Msa0098030:intron | 20.0% |
| !!! | TCATTTCCATAAAAACTTTT+TGG | + | chr1_3:3906426-3906445 | Msa0098030:CDS | 20.0% |
| !!! | ATCAAACCAAAAAGTTTTTA+TGG | - | chr1_3:3906435-3906454 | None:intergenic | 20.0% |
| !! | GACATATATTTGATATAGAT+CGG | + | chr1_3:3906516-3906535 | Msa0098030:three_prime_UTR | 20.0% |
| !!! | TATAGAAAACTAGATTTTTG+TGG | - | chr1_3:3906548-3906567 | None:intergenic | 20.0% |
| ! | ATGATTATTAGGATTTAGTG+GGG | - | chr1_3:3904154-3904173 | None:intergenic | 25.0% |
| ! | GATGATTATTAGGATTTAGT+GGG | - | chr1_3:3904155-3904174 | None:intergenic | 25.0% |
| ! | TGATGATTATTAGGATTTAG+TGG | - | chr1_3:3904156-3904175 | None:intergenic | 25.0% |
| ! | ATCATCAAAATGATCATGAA+GGG | - | chr1_3:3904425-3904444 | None:intergenic | 25.0% |
| !!! | ATGATCATTTTGATGATCAT+GGG | + | chr1_3:3904428-3904447 | Msa0098030:CDS | 25.0% |
| ! | AAATCCATCAAAATGCATTA+AGG | + | chr1_3:3904480-3904499 | Msa0098030:CDS | 25.0% |
| !! | ATAGGAAATGTTGATAAAGA+TGG | + | chr1_3:3904721-3904740 | Msa0098030:CDS | 25.0% |
| !! | AAAACAACAATCAGAAGTTT+TGG | + | chr1_3:3904771-3904790 | Msa0098030:CDS | 25.0% |
| ! | ATATTGATGAATTAAGGTAC+CGG | - | chr1_3:3904829-3904848 | None:intergenic | 25.0% |
| ! | CATCAATATTCTCATATCTT+TGG | + | chr1_3:3904840-3904859 | Msa0098030:intron | 25.0% |
| !! | AATATCAAAACAAAAGTACG+TGG | - | chr1_3:3904895-3904914 | None:intergenic | 25.0% |
| ! | ATATATATTGTTAGAGCGAA+AGG | + | chr1_3:3905931-3905950 | Msa0098030:intron | 25.0% |
| ! | ACAAAAAATGTTAACAGCTA+GGG | + | chr1_3:3906022-3906041 | Msa0098030:intron | 25.0% |
| ! | AGACGTTTAAAAAGTTTAGA+AGG | - | chr1_3:3906063-3906082 | None:intergenic | 25.0% |
| ! | ATACAATTTCACAAAATCTG+AGG | - | chr1_3:3906116-3906135 | None:intergenic | 25.0% |
| !! | TGTGTTATGTTGATGAAAAT+CGG | + | chr1_3:3906602-3906621 | Msa0098030:three_prime_UTR | 25.0% |
| GAAATAGGAAATGATAGGAA+TGG | - | chr1_3:3904225-3904244 | None:intergenic | 30.0% | |
| GATGTGAAATAGGAAATGAT+AGG | - | chr1_3:3904230-3904249 | None:intergenic | 30.0% | |
| AAAAAGAGAGGATGTGAAAT+AGG | - | chr1_3:3904240-3904259 | None:intergenic | 30.0% | |
| TTGTAGGTTGCAATATTCTT+TGG | - | chr1_3:3904289-3904308 | None:intergenic | 30.0% | |
| ! | TCCTCCAATAATTTTCTTCA+AGG | + | chr1_3:3904311-3904330 | Msa0098030:five_prime_UTR | 30.0% |
| ACCTTGAAGAAAATTATTGG+AGG | - | chr1_3:3904315-3904334 | None:intergenic | 30.0% | |
| GATCATCAAAATGATCATGA+AGG | - | chr1_3:3904426-3904445 | None:intergenic | 30.0% | |
| !! | CATGATCATTTTGATGATCA+TGG | + | chr1_3:3904427-3904446 | Msa0098030:CDS | 30.0% |
| ! | TAAGCCTTAATGCATTTTGA+TGG | - | chr1_3:3904487-3904506 | None:intergenic | 30.0% |
| ACAACATTCAACATCAAAGA+CGG | + | chr1_3:3904564-3904583 | Msa0098030:CDS | 30.0% | |
| ! | ATTTGAGGTAGAGATAGAAA+AGG | + | chr1_3:3904684-3904703 | Msa0098030:CDS | 30.0% |
| ACATTTCCTATCCTTGTAAT+TGG | - | chr1_3:3904712-3904731 | None:intergenic | 30.0% | |
| ! | AAAACAAAAGTACGTGGTAT+AGG | - | chr1_3:3904889-3904908 | None:intergenic | 30.0% |
| TTAGAATTAGATCTTGGTCT+TGG | + | chr1_3:3905108-3905127 | Msa0098030:intron | 30.0% | |
| TATGAAGCAAACTCAATCTA+AGG | - | chr1_3:3905164-3905183 | None:intergenic | 30.0% | |
| ! | TCTCTTGGATTACATTTTCT+AGG | + | chr1_3:3905198-3905217 | Msa0098030:intron | 30.0% |
| ! | ATTTTACCAAACACTTTGGT+GGG | - | chr1_3:3905233-3905252 | None:intergenic | 30.0% |
| ! | CAAGATTTTACCAAACACTT+TGG | - | chr1_3:3905237-3905256 | None:intergenic | 30.0% |
| GGTAAAATCTTGATATTCCT+AGG | + | chr1_3:3905245-3905264 | Msa0098030:intron | 30.0% | |
| ATACACTATCTTAAAACGCA+CGG | - | chr1_3:3905627-3905646 | None:intergenic | 30.0% | |
| ATCATCATGACAATTGCTAA+TGG | - | chr1_3:3905698-3905717 | None:intergenic | 30.0% | |
| CACAAAAAATGTTAACAGCT+AGG | + | chr1_3:3906021-3906040 | Msa0098030:intron | 30.0% | |
| AAAGTTTAGAAGGAGGTTTA+GGG | - | chr1_3:3906053-3906072 | None:intergenic | 30.0% | |
| AAAAGTTTAGAAGGAGGTTT+AGG | - | chr1_3:3906054-3906073 | None:intergenic | 30.0% | |
| CGTTTAAAAAGTTTAGAAGG+AGG | - | chr1_3:3906060-3906079 | None:intergenic | 30.0% | |
| TTCACAAAATCTGAGGAATA+AGG | - | chr1_3:3906109-3906128 | None:intergenic | 30.0% | |
| GCTGGAATCTTCATATAAAA+GGG | - | chr1_3:3906307-3906326 | None:intergenic | 30.0% | |
| TGCTGGAATCTTCATATAAA+AGG | - | chr1_3:3906308-3906327 | None:intergenic | 30.0% | |
| ! | AGAAAACTAGATTTTTGTGG+TGG | - | chr1_3:3906545-3906564 | None:intergenic | 30.0% |
| AAATTATTGGAGGAGCTTGT+AGG | - | chr1_3:3904305-3904324 | None:intergenic | 35.0% | |
| CTTCAACTTGATCTTGATCT+AGG | + | chr1_3:3904394-3904413 | Msa0098030:CDS | 35.0% | |
| GCTTATCCAATGCTTACATT+AGG | + | chr1_3:3904502-3904521 | Msa0098030:CDS | 35.0% | |
| CTTGCAGAAGTAAATTGAGT+AGG | - | chr1_3:3904610-3904629 | None:intergenic | 35.0% | |
| !! | TAGAAAAGGTGCCAATTACA+AGG | + | chr1_3:3904698-3904717 | Msa0098030:CDS | 35.0% |
| !! | ACAACAATCAGAAGTTTTGG+AGG | + | chr1_3:3904774-3904793 | Msa0098030:CDS | 35.0% |
| !! | GAATTAAGGTACCGGATTAA+GGG | - | chr1_3:3904821-3904840 | None:intergenic | 35.0% |
| !! | TGAATTAAGGTACCGGATTA+AGG | - | chr1_3:3904822-3904841 | None:intergenic | 35.0% |
| ! | ATTATTCCCACCAAAGTGTT+TGG | + | chr1_3:3905224-3905243 | Msa0098030:intron | 35.0% |
| ! | GATTTTACCAAACACTTTGG+TGG | - | chr1_3:3905234-3905253 | None:intergenic | 35.0% |
| CTTGATATTCCTAGGAAAGT+TGG | + | chr1_3:3905253-3905272 | Msa0098030:intron | 35.0% | |
| ! | ATATTCCTAGGAAAGTTGGT+AGG | + | chr1_3:3905257-3905276 | Msa0098030:intron | 35.0% |
| ! | TCTAAGGTGTGTTTGTTTCA+AGG | - | chr1_3:3905391-3905410 | None:intergenic | 35.0% |
| ! | TAGAGGTGTGGTTTCAAAAT+CGG | + | chr1_3:3905580-3905599 | Msa0098030:CDS | 35.0% |
| AGGTAAAGTATGCGATCAAA+GGG | - | chr1_3:3906089-3906108 | None:intergenic | 35.0% | |
| AAGGTAAAGTATGCGATCAA+AGG | - | chr1_3:3906090-3906109 | None:intergenic | 35.0% | |
| CAGAACAAAGCTGAAACAAA+CGG | + | chr1_3:3906171-3906190 | Msa0098030:intron | 35.0% | |
| !!! | CTAGTTTTCTATAATGGACG+TGG | + | chr1_3:3906555-3906574 | Msa0098030:three_prime_UTR | 35.0% |
| ! | TTGATGAAAATCGGCTTAGA+AGG | + | chr1_3:3906611-3906630 | Msa0098030:three_prime_UTR | 35.0% |
| ! | TTGATGATACCTCCAACACA+TGG | + | chr1_3:3904371-3904390 | Msa0098030:CDS | 40.0% |
| !! | ATCAAGTTGAAGCCATGTGT+TGG | - | chr1_3:3904386-3904405 | None:intergenic | 40.0% |
| GATGGTCCTAATGTAAGCAT+TGG | - | chr1_3:3904511-3904530 | None:intergenic | 40.0% | |
| GCTTACATTAGGACCATCAA+AGG | + | chr1_3:3904513-3904532 | Msa0098030:CDS | 40.0% | |
| TCTTCACTCTCTTCCTTTGA+TGG | - | chr1_3:3904529-3904548 | None:intergenic | 40.0% | |
| TTTCAAATTCCACCAGCATC+AGG | + | chr1_3:3904644-3904663 | Msa0098030:CDS | 40.0% | |
| ! | AAGGTGCCAATTACAAGGAT+AGG | + | chr1_3:3904703-3904722 | Msa0098030:CDS | 40.0% |
| TTGATAAAGATGGTAGCCCA+AGG | + | chr1_3:3904731-3904750 | Msa0098030:CDS | 40.0% | |
| TGAGCCTAAGTTTCTTCCTT+GGG | - | chr1_3:3904750-3904769 | None:intergenic | 40.0% | |
| ! | AGAGCATTCTACCCTTAATC+CGG | + | chr1_3:3904807-3904826 | Msa0098030:CDS | 40.0% |
| ! | CACGCACAGTATTTTTCTCA+TGG | + | chr1_3:3905004-3905023 | Msa0098030:intron | 40.0% |
| ! | TGGTCTTGGTTGATTGTGTT+TGG | + | chr1_3:3905122-3905141 | Msa0098030:intron | 40.0% |
| AGCAAATAAGCTGAATCTGC+AGG | + | chr1_3:3905548-3905567 | Msa0098030:CDS | 40.0% | |
| GCGAAAGGAGAAAACTTAGA+TGG | + | chr1_3:3905946-3905965 | Msa0098030:intron | 40.0% | |
| AGGAGAAAACTTAGATGGCA+CGG | + | chr1_3:3905951-3905970 | Msa0098030:intron | 40.0% | |
| TATTCTCTACGTGCGCAATA+TGG | - | chr1_3:3905988-3906007 | None:intergenic | 40.0% | |
| GGAGAACAAGAAGTTGCAAA+AGG | + | chr1_3:3906240-3906259 | Msa0098030:CDS | 40.0% | |
| ATTTGTGGTGGCAACAACAA+TGG | + | chr1_3:3906361-3906380 | Msa0098030:CDS | 40.0% | |
| AAGCAATGTTGTTGAGGGTA+AGG | - | chr1_3:3906389-3906408 | None:intergenic | 40.0% | |
| CCAGTAAGCAATGTTGTTGA+GGG | - | chr1_3:3906394-3906413 | None:intergenic | 40.0% | |
| AAGTTGAAGCCATGTGTTGG+AGG | - | chr1_3:3904383-3904402 | None:intergenic | 45.0% | |
| AAATTCCACCAGCATCAGGA+AGG | + | chr1_3:3904648-3904667 | Msa0098030:CDS | 45.0% | |
| GTAGCCCAAGGAAGAAACTT+AGG | + | chr1_3:3904743-3904762 | Msa0098030:CDS | 45.0% | |
| GTGAGCCTAAGTTTCTTCCT+TGG | - | chr1_3:3904751-3904770 | None:intergenic | 45.0% | |
| ACACACCTACCAACTTTCCT+AGG | - | chr1_3:3905265-3905284 | None:intergenic | 45.0% | |
| GTGTTGCGAATCTCTAACAG+AGG | + | chr1_3:3906219-3906238 | Msa0098030:CDS | 45.0% | |
| CACAAATTGTCTCGCACGAA+GGG | - | chr1_3:3906348-3906367 | None:intergenic | 45.0% | |
| CCCTCAACAACATTGCTTAC+TGG | + | chr1_3:3906391-3906410 | Msa0098030:CDS | 45.0% | |
| GCCAGTAAGCAATGTTGTTG+AGG | - | chr1_3:3906395-3906414 | None:intergenic | 45.0% | |
| GGAGAGTGGTGAGGAATTTG+AGG | + | chr1_3:3904669-3904688 | Msa0098030:CDS | 50.0% | |
| TCTGCAGGCTAGACAAGTAG+AGG | + | chr1_3:3905563-3905582 | Msa0098030:CDS | 50.0% | |
| AGGCTAGACAAGTAGAGGTG+TGG | + | chr1_3:3905568-3905587 | Msa0098030:CDS | 50.0% | |
| GGTTTCAAAATCGGAGAGCC+AGG | + | chr1_3:3905589-3905608 | Msa0098030:CDS | 50.0% | |
| GCACGGAGCAGTAAATTACC+TGG | - | chr1_3:3905610-3905629 | None:intergenic | 50.0% | |
| ! | CAGATGGTAAGTGTTGCTGC+TGG | - | chr1_3:3906325-3906344 | None:intergenic | 50.0% |
| CCACAAATTGTCTCGCACGA+AGG | - | chr1_3:3906349-3906368 | None:intergenic | 50.0% | |
| CCTTCGTGCGAGACAATTTG+TGG | + | chr1_3:3906346-3906365 | Msa0098030:CDS | 50.0% | |
| TCGTGCGAGACAATTTGTGG+TGG | + | chr1_3:3906349-3906368 | Msa0098030:CDS | 50.0% | |
| ACTCTCCTTCCTGATGCTGG+TGG | - | chr1_3:3904656-3904675 | None:intergenic | 55.0% | |
| ACCAGCATCAGGAAGGAGAG+TGG | + | chr1_3:3904655-3904674 | Msa0098030:CDS | 55.0% | |
| ACCACTCTCCTTCCTGATGC+TGG | - | chr1_3:3904659-3904678 | None:intergenic | 55.0% | |
| CATCAGGAAGGAGAGTGGTG+AGG | + | chr1_3:3904660-3904679 | Msa0098030:CDS | 55.0% | |
| TGTCTCGCACGAAGGGCAGA+TGG | - | chr1_3:3906341-3906360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3904143 | 3906666 | 3904143 | ID=Msa0098030;Name=Msa0098030 |
| chr1_3 | mRNA | 3904143 | 3906666 | 3904143 | ID=Msa0098030-mRNA-1;Parent=Msa0098030;Name=Msa0098030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=221|1|1|1|1|1|3|213|274 |
| chr1_3 | exon | 3904143 | 3904828 | 3904143 | ID=Msa0098030-mRNA-1:exon:1262;Parent=Msa0098030-mRNA-1 |
| chr1_3 | exon | 3905531 | 3905610 | 3905531 | ID=Msa0098030-mRNA-1:exon:1263;Parent=Msa0098030-mRNA-1 |
| chr1_3 | exon | 3906174 | 3906666 | 3906174 | ID=Msa0098030-mRNA-1:exon:1264;Parent=Msa0098030-mRNA-1 |
| chr1_3 | five_prime_UTR | 3904143 | 3904363 | 3904143 | ID=Msa0098030-mRNA-1:five_prime_utr;Parent=Msa0098030-mRNA-1 |
| chr1_3 | CDS | 3904364 | 3904828 | 3904364 | ID=Msa0098030-mRNA-1:cds;Parent=Msa0098030-mRNA-1 |
| chr1_3 | CDS | 3905531 | 3905610 | 3905531 | ID=Msa0098030-mRNA-1:cds;Parent=Msa0098030-mRNA-1 |
| chr1_3 | CDS | 3906174 | 3906453 | 3906174 | ID=Msa0098030-mRNA-1:cds;Parent=Msa0098030-mRNA-1 |
| chr1_3 | three_prime_UTR | 3906454 | 3906666 | 3906454 | ID=Msa0098030-mRNA-1:three_prime_utr;Parent=Msa0098030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
