AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019150 MtrunA17_Chr5g0444881 62.381 210 41 6 75 246 265 474 5.18e-63 213
Msa0019150 MtrunA17_Chr8g0354131 40.385 208 91 5 86 260 280 487 2.37e-34 134
Msa0019150 MtrunA17_Chr1g0164981 40.367 218 97 5 86 270 290 507 4.59e-34 134
Msa0019150 MtrunA17_Chr1g0188201 47.727 132 67 1 77 206 269 400 1.01e-29 122
Msa0019150 MtrunA17_Chr3g0122591 34.940 249 115 8 52 253 245 493 9.08e-29 119
Msa0019150 MtrunA17_Chr8g0345241 36.652 221 112 8 81 276 274 491 3.23e-28 116
Msa0019150 MtrunA17_Chr6g0476051 46.212 132 66 2 77 206 271 399 4.21e-26 111
Msa0019150 MtrunA17_Chr7g0275321 63.333 90 33 0 312 401 179 268 1.93e-25 107
Msa0019150 MtrunA17_Chr7g0261511 91.489 47 4 0 387 433 166 212 8.63e-23 95.9
Msa0019150 MtrunA17_Chr7g0245851 41.538 130 71 2 79 206 624 750 1.80e-21 97.4
Msa0019150 MtrunA17_Chr1g0183621 80.000 50 10 0 384 433 167 216 2.98e-19 85.9
Msa0019150 MtrunA17_Chr2g0303251 65.385 52 14 1 384 431 163 214 2.32e-13 68.9
Msa0019150 MtrunA17_Chr8g0347741 46.053 76 41 0 312 387 183 258 7.44e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019150 AT5G55230.3 77.236 123 26 1 86 206 280 402 4.61e-57 197
Msa0019150 AT5G55230.1 77.236 123 26 1 86 206 280 402 4.61e-57 197
Msa0019150 AT4G26760.1 56.158 203 56 3 86 255 280 482 9.37e-57 197
Msa0019150 AT5G55230.2 62.500 152 26 2 86 206 280 431 3.75e-51 182
Msa0019150 AT2G01910.2 46.154 143 67 2 65 205 236 370 1.16e-30 124
Msa0019150 AT2G01910.1 46.154 143 67 2 65 205 277 411 1.85e-30 124
Msa0019150 AT2G38720.1 54.386 114 50 1 95 206 281 394 5.12e-30 122
Msa0019150 AT1G14690.1 35.160 219 109 4 85 270 289 507 4.62e-29 120
Msa0019150 AT1G14690.2 35.160 219 109 4 85 270 289 507 4.62e-29 120
Msa0019150 AT5G51600.1 46.212 132 69 1 77 206 272 403 4.77e-27 114
Msa0019150 AT1G27920.1 34.426 244 113 7 63 273 272 501 6.28e-27 113
Msa0019150 AT1G27920.2 42.568 148 74 3 62 207 271 409 7.16e-27 112
Msa0019150 AT5G62250.2 36.041 197 92 5 86 248 282 478 2.13e-21 97.1
Msa0019150 AT5G62250.1 36.041 197 92 5 86 248 282 478 2.13e-21 97.1
Msa0019150 AT3G60840.1 44.167 120 65 1 89 206 280 399 1.57e-20 94.7
Msa0019150 AT1G03950.1 70.833 48 14 0 384 431 163 210 5.89e-16 77.0

Find 99 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCTTTGAGTGCCTTAA+TGG 0.148948 1_1:-33242214 Msa0019150:CDS
ATAACTACAGCCAAAATTTA+TGG 0.170867 1_1:+33240284 None:intergenic
TTTAGGATTCATACCTTCTT+AGG 0.185148 1_1:+33244838 None:intergenic
TCTAAGAAACCCATAAATTT+TGG 0.196836 1_1:-33240294 Msa0019150:exon
CTCTTCCCATGCATGTGTTT+TGG 0.219325 1_1:+33242664 None:intergenic
ATCAGAAACTGCAATTTCTT+TGG 0.234190 1_1:+33241331 None:intergenic
TTGGCCTAAAGCTTCTTCTT+TGG 0.263013 1_1:+33243260 None:intergenic
TTAACTGTTGCAGAGAGTTT+TGG 0.285846 1_1:-33241981 Msa0019150:CDS
CTTTGATGCGATTCTCCCTT+TGG 0.296629 1_1:+33240571 None:intergenic
CATTGAACCAACTGAATTAC+TGG 0.310358 1_1:-33243304 Msa0019150:CDS
CGACCATACTCTAGGCTATA+TGG 0.316135 1_1:-33244105 Msa0019150:intron
TCAAGGCTTGCTGCATTTAG+AGG 0.327349 1_1:-33243969 Msa0019150:intron
TGCTCTTACCTATTGATGTT+TGG 0.330713 1_1:-33240040 Msa0019150:three_prime_UTR
TAACTACAGCCAAAATTTAT+GGG 0.343069 1_1:+33240285 None:intergenic
ATTAGCAGATCCTGTTACTA+AGG 0.346276 1_1:+33242176 None:intergenic
TGTTTGGTAGGAGTGAAATT+AGG 0.354521 1_1:-33240024 Msa0019150:three_prime_UTR
TTTGATGCGATTCTCCCTTT+GGG 0.378697 1_1:+33240572 None:intergenic
TATTCCTGGTGCACTTGCTC+TGG 0.380985 1_1:-33243583 Msa0019150:CDS
GTCAATGAAGTCACTATTCC+TGG 0.394176 1_1:-33243597 Msa0019150:CDS
GGAAAACAACCCTTAGTAAC+AGG 0.395828 1_1:-33242186 Msa0019150:CDS
ACATATATATTCCACAACTA+TGG 0.400628 1_1:+33240102 None:intergenic
TATAATATATTAAATTTATG+AGG 0.404847 1_1:-33240155 Msa0019150:three_prime_UTR
CACTCCTACCAAACATCAAT+AGG 0.421877 1_1:+33240032 None:intergenic
TGATGACCTTGAGAAGCGTT+TGG 0.421971 1_1:-33240321 Msa0019150:CDS
GTTGCCCCTGCTGGTGTCGC+AGG 0.424600 1_1:-33241296 Msa0019150:CDS
CTTACCTATTGATGTTTGGT+AGG 0.431148 1_1:-33240036 Msa0019150:three_prime_UTR
TCATCCTGCTTGCTTTAAGT+TGG 0.434157 1_1:+33243442 None:intergenic
TATATATCATCATTATTTCA+AGG 0.437314 1_1:+33240174 None:intergenic
AATTGACCTGCGACACCAGC+AGG 0.437591 1_1:+33241290 None:intergenic
TATTGGACAAGTTTGAGAAA+TGG 0.439573 1_1:-33243230 Msa0019150:CDS
GCTGGCTTGAGGACTATAAT+CGG 0.444875 1_1:-33243185 Msa0019150:CDS
CTTATCAGAACCTGTTGATA+AGG 0.450224 1_1:-33242012 Msa0019150:CDS
AAAGCCAAAGAAGAAGCTTT+AGG 0.457201 1_1:-33243264 Msa0019150:CDS
CGGTGTGGATGTTGCCTCAC+AGG 0.459435 1_1:-33240699 Msa0019150:intron
TATCCACAAGGCACCTAAGA+AGG 0.467591 1_1:-33244851 Msa0019150:intron
TCATCTAACATGGCAAGAAT+AGG 0.469444 1_1:+33242608 None:intergenic
TTTGGTTCAATATGGTAATG+AGG 0.482030 1_1:-33245810 None:intergenic
TGGCAGGTGCTTGATGAAAT+CGG 0.487944 1_1:-33240719 Msa0019150:intron
TGACATGCTTAGGCATGAAC+GGG 0.488552 1_1:-33242582 Msa0019150:CDS
ACTGTTTAAGCAGATGGAGA+TGG 0.489746 1_1:-33241383 Msa0019150:intron
AGACCATATAGCCTAGAGTA+TGG 0.490132 1_1:+33244102 None:intergenic
GAACCTGTTGATAAGGCAAA+AGG 0.495619 1_1:-33242005 Msa0019150:CDS
TGCAGTTTCTGATAAGATGA+TGG 0.495839 1_1:-33241321 Msa0019150:CDS
TGCTCATATAGAAATAGATT+CGG 0.505688 1_1:-33243370 Msa0019150:CDS
TTCAGCGATGACCACCGCGC+TGG 0.513035 1_1:-33241249 Msa0019150:CDS
GATACGTCATTCACATATGA+TGG 0.515883 1_1:-33242635 Msa0019150:CDS
TAGATGAATATGACATGCTT+AGG 0.517226 1_1:-33242592 Msa0019150:CDS
AGATCCAGAGCAAGTGCACC+AGG 0.523988 1_1:+33243579 None:intergenic
TGCAGCTTTGGTTGATACAT+TGG 0.533646 1_1:-33242690 Msa0019150:intron
GCAGCAAGCCTTGACTGATA+AGG 0.534526 1_1:+33243978 None:intergenic
CTGTTTAAGCAGATGGAGAT+GGG 0.534631 1_1:-33241382 Msa0019150:intron
CATGGTAATACAAAGAAGAC+TGG 0.535833 1_1:-33241799 Msa0019150:intron
ACTTAAAGCAAGCAGGATGA+AGG 0.536557 1_1:-33243439 Msa0019150:CDS
TGCTCTGGATCTGATTGAGC+AGG 0.537227 1_1:-33243568 Msa0019150:intron
ATGATGGCAGTTGCCCCTGC+TGG 0.540223 1_1:-33241305 Msa0019150:CDS
TGACCTTGAGAAGCGTTTGG+CGG 0.541826 1_1:-33240318 Msa0019150:CDS
GGTGTCGCAGGTCAATTAGT+TGG 0.542651 1_1:-33241284 Msa0019150:CDS
ATGACATGCTTAGGCATGAA+CGG 0.544393 1_1:-33242583 Msa0019150:CDS
AGTTATCAGCAGCTCCCAAA+GGG 0.549435 1_1:-33240586 Msa0019150:CDS
ACTGAGTCTGTGTCTGATCA+TGG 0.552055 1_1:-33241817 Msa0019150:CDS
CAATATGGTAATGAGGAACA+AGG 0.555528 1_1:-33245803 None:intergenic
TGGTTGCCAAAACACATGCA+TGG 0.558290 1_1:-33242670 Msa0019150:CDS
AATATATTAAATTTATGAGG+TGG 0.559384 1_1:-33240152 Msa0019150:three_prime_UTR
ATACCTTCTTAGGTGCCTTG+TGG 0.561603 1_1:+33244848 None:intergenic
GAGGAACAAGGGTGGTAATG+AGG 0.563012 1_1:-33245791 Msa0019150:CDS
CTGGCTTGAGGACTATAATC+GGG 0.565872 1_1:-33243184 Msa0019150:intron
TTAGCAGATCCTGTTACTAA+GGG 0.565933 1_1:+33242177 None:intergenic
AGAATACTGAAAATGTCGGC+AGG 0.567256 1_1:-33240550 Msa0019150:intron
ACAAACCACCTTATCAGTCA+AGG 0.567759 1_1:-33243986 Msa0019150:CDS
GGTAAGAGCAGAAATGAACT+TGG 0.570530 1_1:+33240053 None:intergenic
CAGCATGTGAAGAAGAGAGC+TGG 0.571216 1_1:-33243203 Msa0019150:CDS
TAGGAGTGAAATTAGGCAAG+AGG 0.574905 1_1:-33240017 Msa0019150:three_prime_UTR
GGTTGCCAAAACACATGCAT+GGG 0.577613 1_1:-33242669 Msa0019150:CDS
TGAAGAAGAGAGCTGGCTTG+AGG 0.585193 1_1:-33243196 Msa0019150:CDS
TCAAAGAATACTGAAAATGT+CGG 0.585548 1_1:-33240554 Msa0019150:CDS
GAGCCGCCAAACGCTTCTCA+AGG 0.592287 1_1:+33240315 None:intergenic
TATATGGTTCACGTTCTCAA+AGG 0.592630 1_1:-33240264 Msa0019150:three_prime_UTR
TTTGAGTGCCTTAATGGACA+AGG 0.597250 1_1:-33242208 Msa0019150:CDS
TTGACCAACTTAAAGCAAGC+AGG 0.598791 1_1:-33243446 Msa0019150:CDS
TTGTCAGCCAGTAATTCAGT+TGG 0.600517 1_1:+33243297 None:intergenic
GCAAGCCTTGACTGATAAGG+TGG 0.603799 1_1:+33243981 None:intergenic
CAGTTATCAGCAGCTCCCAA+AGG 0.607564 1_1:-33240587 Msa0019150:CDS
TTGAGTGCCTTAATGGACAA+GGG 0.612296 1_1:-33242207 Msa0019150:CDS
ATCATGCACGACCATACTCT+AGG 0.616389 1_1:-33244113 Msa0019150:CDS
TGCTGCAAGAGAGAAGATCA+TGG 0.621986 1_1:-33243346 Msa0019150:CDS
TTGTAGTTGAGCCATAGTTG+TGG 0.623128 1_1:-33240113 Msa0019150:three_prime_UTR
GTCATCGCTGAAGAAACTGC+AGG 0.623544 1_1:+33241260 None:intergenic
GCAAGAGGAGAACGATAGTG+AGG 0.641307 1_1:-33240002 Msa0019150:three_prime_UTR
ATTGACCTGCGACACCAGCA+GGG 0.653280 1_1:+33241291 None:intergenic
AAGGGTGGTAATGAGGAACA+AGG 0.660265 1_1:-33245784 Msa0019150:CDS
ATTTCTCAGCTCCAGCGCGG+TGG 0.663610 1_1:+33241238 None:intergenic
TTGACCTGCGACACCAGCAG+GGG 0.669385 1_1:+33241292 None:intergenic
AATATGGTAATGAGGAACAA+GGG 0.670742 1_1:-33245802 Msa0019150:CDS
GATGGGAAAACTCATACACA+AGG 0.698025 1_1:-33241365 Msa0019150:CDS
AGGGTGGTAATGAGGAACAA+GGG 0.706519 1_1:-33245783 Msa0019150:CDS
AAAGCTTATTCCTACCTGTG+AGG 0.707349 1_1:+33240685 None:intergenic
ATGGTAATGAGGAACAAGGG+TGG 0.717730 1_1:-33245799 Msa0019150:CDS
GGTGCTTGATGAAATCGGTG+TGG 0.719676 1_1:-33240714 Msa0019150:CDS
AGAATTTCTCAGCTCCAGCG+CGG 0.750273 1_1:+33241235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATGTAAAAAATAAAT+GGG - chr1_1:33240459-33240478 Msa0019150:intron 10.0%
!! TCTAATATCTAATATTAATA+AGG + chr1_1:33240913-33240932 None:intergenic 10.0%
!! TTAAATCAAAAATGATATAT+TGG + chr1_1:33242766-33242785 None:intergenic 10.0%
!! GAATTGATGTAAAAAATAAA+TGG - chr1_1:33240458-33240477 Msa0019150:intron 15.0%
!! AATATGATATATATCGTAAT+GGG + chr1_1:33240991-33241010 None:intergenic 15.0%
!! TGATAGAATAATTCTATTAT+GGG - chr1_1:33241094-33241113 Msa0019150:intron 15.0%
!!! AAATTGTTGTTTGAATATTA+TGG - chr1_1:33241325-33241344 Msa0019150:CDS 15.0%
!!! AATTGTTGTTTGAATATTAT+GGG - chr1_1:33241326-33241345 Msa0019150:CDS 15.0%
!!! TTATTTTGTTCTTTTTATGA+AGG - chr1_1:33242210-33242229 Msa0019150:CDS 15.0%
!!! TTAACAGATTTTCTTAAATA+TGG - chr1_1:33243622-33243641 Msa0019150:intron 15.0%
!!! AAACATATCTATCATATTTT+GGG + chr1_1:33244292-33244311 None:intergenic 15.0%
!!! AAAACATATCTATCATATTT+TGG + chr1_1:33244293-33244312 None:intergenic 15.0%
!!! TTTTTGTTTTTTAGAGAATA+GGG + chr1_1:33245196-33245215 None:intergenic 15.0%
!! TATATATCATCATTATTTCA+AGG + chr1_1:33245529-33245548 None:intergenic 15.0%
!! AATATATTAAATTTATGAGG+TGG - chr1_1:33245548-33245567 Msa0019150:intron 15.0%
!!! TTGATGTTGAATTATTTTCT+GGG - chr1_1:33240006-33240025 Msa0019150:three_prime_UTR 20.0%
!!! ATGTAAAAAATAAATGGGTT+GGG - chr1_1:33240464-33240483 Msa0019150:intron 20.0%
!!! CATAAGATTTTTATTGCATT+TGG - chr1_1:33240657-33240676 Msa0019150:intron 20.0%
!!! AAATGTTGTCTAAAATGAAT+AGG + chr1_1:33240770-33240789 None:intergenic 20.0%
!! CAATATGATATATATCGTAA+TGG + chr1_1:33240992-33241011 None:intergenic 20.0%
!! CTGATAGAATAATTCTATTA+TGG - chr1_1:33241093-33241112 Msa0019150:intron 20.0%
!! GTGGAAAATTTACTAAATAA+TGG - chr1_1:33241116-33241135 Msa0019150:intron 20.0%
!!! AACTGAATTTACAATCATTT+TGG - chr1_1:33241481-33241500 Msa0019150:intron 20.0%
!!! ATATTTTGAACTGAAGAAAA+TGG - chr1_1:33241644-33241663 Msa0019150:intron 20.0%
!! AACATTAAGCAATATGATAA+GGG - chr1_1:33241878-33241897 Msa0019150:intron 20.0%
!!! ATTTTTCATTATGCATTGTT+TGG - chr1_1:33241914-33241933 Msa0019150:intron 20.0%
!!! TTTTTCATTATGCATTGTTT+GGG - chr1_1:33241915-33241934 Msa0019150:intron 20.0%
!! ATATATGTTGAACTTTATGT+GGG - chr1_1:33242029-33242048 Msa0019150:intron 20.0%
!! AATTTGATCATTGCATTAAA+TGG - chr1_1:33242726-33242745 Msa0019150:intron 20.0%
!! ATTAATATAACAGTATCTGA+TGG + chr1_1:33242911-33242930 None:intergenic 20.0%
!!! AGAATTAACATTGTTTCTTT+TGG - chr1_1:33242981-33243000 Msa0019150:intron 20.0%
!! ATCGTGAAAAAACTAAAATT+AGG + chr1_1:33243285-33243304 None:intergenic 20.0%
!! ATTATTAATATAAATGCCTC+TGG - chr1_1:33243445-33243464 Msa0019150:CDS 20.0%
!! TTTAAAAAACATCACAACAT+TGG + chr1_1:33243571-33243590 None:intergenic 20.0%
!!! TTTAACTGTAGTTTGTTAAT+AGG - chr1_1:33243596-33243615 Msa0019150:CDS 20.0%
!!! TGTTTTCATTGTTTTGAAAT+AGG - chr1_1:33243822-33243841 Msa0019150:intron 20.0%
!!! AGTACATTTGATGTTTTATA+TGG - chr1_1:33244608-33244627 Msa0019150:intron 20.0%
!! TATGGTATAGTTAAATTCAT+TGG - chr1_1:33244626-33244645 Msa0019150:intron 20.0%
!!! GTATTTTATTTGTACTCTTT+TGG - chr1_1:33245090-33245109 Msa0019150:intron 20.0%
!!! CTTTTTGTTTTTTAGAGAAT+AGG + chr1_1:33245197-33245216 None:intergenic 20.0%
!! ACAAGTTAAAATTTCTTAAG+CGG - chr1_1:33245296-33245315 Msa0019150:intron 20.0%
!! GTAATAACATCAAAATTCTA+AGG + chr1_1:33245348-33245367 None:intergenic 20.0%
!! CTTGATGTTGAATTATTTTC+TGG - chr1_1:33240005-33240024 Msa0019150:three_prime_UTR 25.0%
! TGTTCATCACAACAAATATT+AGG - chr1_1:33240096-33240115 Msa0019150:three_prime_UTR 25.0%
!!! TTTTGTGATTTTGATTGTGT+AGG - chr1_1:33240214-33240233 Msa0019150:three_prime_UTR 25.0%
! ATTAGTGTAAGTGTAATCAT+GGG - chr1_1:33240263-33240282 Msa0019150:three_prime_UTR 25.0%
! GATGTAAAAAATAAATGGGT+TGG - chr1_1:33240463-33240482 Msa0019150:intron 25.0%
! ACAAAGGGATTATCTTAAAA+AGG - chr1_1:33240684-33240703 Msa0019150:intron 25.0%
! GTATAATGCATTAGGAATTT+AGG + chr1_1:33240882-33240901 None:intergenic 25.0%
! AACTACTTGTATAATGCATT+AGG + chr1_1:33240890-33240909 None:intergenic 25.0%
! CAAGTCATATGAAATGTATT+TGG + chr1_1:33240949-33240968 None:intergenic 25.0%
! ATTCTATCAGAATTACAACA+AGG + chr1_1:33241083-33241102 None:intergenic 25.0%
! TAGAATAATTCTATTATGGG+TGG - chr1_1:33241097-33241116 Msa0019150:intron 25.0%
! ATTGCTAATCCAATTTGTAA+TGG + chr1_1:33241160-33241179 None:intergenic 25.0%
!! TATTTATTGTTGTTGCAACT+TGG - chr1_1:33241205-33241224 Msa0019150:intron 25.0%
! TAAAGTTTCATAATCTCTGT+TGG - chr1_1:33241230-33241249 Msa0019150:CDS 25.0%
!! GTGATAGAATTAAATGCTTT+TGG - chr1_1:33241272-33241291 Msa0019150:CDS 25.0%
! AATATATAGCCAATGTAAGA+TGG + chr1_1:33241629-33241648 None:intergenic 25.0%
!! TTTCCTTTTGTGTTCTTTTT+TGG - chr1_1:33241765-33241784 Msa0019150:intron 25.0%
! AATCCAAAAAAGAACACAAA+AGG + chr1_1:33241771-33241790 None:intergenic 25.0%
!!! TTTGTGTTCTTTTTTGGATT+TGG - chr1_1:33241771-33241790 Msa0019150:intron 25.0%
! CAACATTAAGCAATATGATA+AGG - chr1_1:33241877-33241896 Msa0019150:intron 25.0%
! ACATTAAGCAATATGATAAG+GGG - chr1_1:33241879-33241898 Msa0019150:intron 25.0%
!! TTTTCTTGAAGCAAAAAACT+GGG + chr1_1:33241949-33241968 None:intergenic 25.0%
!! ATTTTCTTGAAGCAAAAAAC+TGG + chr1_1:33241950-33241969 None:intergenic 25.0%
!!! TTTTTTGCTTCAAGAAAATG+CGG - chr1_1:33241951-33241970 Msa0019150:intron 25.0%
! CATATATGTTGAACTTTATG+TGG - chr1_1:33242028-33242047 Msa0019150:intron 25.0%
!!! CTTCTGAAGTTTAAAAGTTT+GGG - chr1_1:33242165-33242184 Msa0019150:CDS 25.0%
! TGCTCATATAGAAATAGATT+CGG - chr1_1:33242330-33242349 Msa0019150:intron 25.0%
! TTTAGGCCAAAAAGATATAT+TGG - chr1_1:33242453-33242472 Msa0019150:intron 25.0%
!! ACTTGTCCAATATATCTTTT+TGG + chr1_1:33242462-33242481 None:intergenic 25.0%
! TGATTTCATTCCATAAATAC+CGG + chr1_1:33242882-33242901 None:intergenic 25.0%
!!! TTATATTTGCTGTTGATATC+AGG - chr1_1:33242930-33242949 Msa0019150:intron 25.0%
! ACAAAAAGATGCTACATTAT+TGG - chr1_1:33242957-33242976 Msa0019150:intron 25.0%
! CAGAAGCTACAAAAAATTTA+GGG + chr1_1:33243175-33243194 None:intergenic 25.0%
! ACAGAAGCTACAAAAAATTT+AGG + chr1_1:33243176-33243195 None:intergenic 25.0%
! AAAATGCATAAATCGAAACT+GGG + chr1_1:33243248-33243267 None:intergenic 25.0%
! AAAAATGCATAAATCGAAAC+TGG + chr1_1:33243249-33243268 None:intergenic 25.0%
! CAAATTGACATAAAACAATG+AGG + chr1_1:33243395-33243414 None:intergenic 25.0%
!!! CTCATTGTTTTATGTCAATT+TGG - chr1_1:33243393-33243412 Msa0019150:CDS 25.0%
! TGTCTTGAATATCATTATTC+AGG - chr1_1:33243655-33243674 Msa0019150:intron 25.0%
! GACACAATAAAGTAACATTT+AGG + chr1_1:33243767-33243786 None:intergenic 25.0%
! TTCAAAACAATGAAAACACT+TGG + chr1_1:33243820-33243839 None:intergenic 25.0%
!!! ATTTGTTTTAGTATGAACAC+TGG + chr1_1:33244492-33244511 None:intergenic 25.0%
! ACTCGTGTTAAAGATAATAT+AGG + chr1_1:33244682-33244701 None:intergenic 25.0%
! ATATTATCTTTAACACGAGT+TGG - chr1_1:33244682-33244701 Msa0019150:intron 25.0%
! TATTATCTTTAACACGAGTT+GGG - chr1_1:33244683-33244702 Msa0019150:intron 25.0%
! TAATTTCAGAAGTAGTTTCA+GGG + chr1_1:33244779-33244798 None:intergenic 25.0%
! TACAATGTCATGATTTCTTA+TGG - chr1_1:33244813-33244832 Msa0019150:intron 25.0%
! TTTATTCACAAAGAGTAAGA+TGG - chr1_1:33244872-33244891 Msa0019150:CDS 25.0%
! TTATTCACAAAGAGTAAGAT+GGG - chr1_1:33244873-33244892 Msa0019150:CDS 25.0%
!! AATTACACTTACCTTTTTCT+TGG - chr1_1:33244961-33244980 Msa0019150:intron 25.0%
! TCAAAGAATACTGAAAATGT+CGG - chr1_1:33245146-33245165 Msa0019150:intron 25.0%
! CAAAAAGAAAGTTAAGAGAA+AGG - chr1_1:33245210-33245229 Msa0019150:intron 25.0%
!!! ATTTTGATGTTATTACAGCT+CGG - chr1_1:33245352-33245371 Msa0019150:intron 25.0%
!! TCTAAGAAACCCATAAATTT+TGG - chr1_1:33245406-33245425 Msa0019150:intron 25.0%
! TAACTACAGCCAAAATTTAT+GGG + chr1_1:33245418-33245437 None:intergenic 25.0%
! ATAACTACAGCCAAAATTTA+TGG + chr1_1:33245419-33245438 None:intergenic 25.0%
!!! AAATTTTGGCTGTAGTTATA+TGG - chr1_1:33245420-33245439 Msa0019150:intron 25.0%
! ACATATATATTCCACAACTA+TGG + chr1_1:33245601-33245620 None:intergenic 25.0%
!! AATCTAAAGTCATGCTTTTC+AGG - chr1_1:33239955-33239974 Msa0019150:three_prime_UTR 30.0%
ACTTGCATGTGATTTATGTT+TGG - chr1_1:33240046-33240065 Msa0019150:three_prime_UTR 30.0%
CTTGCATGTGATTTATGTTT+GGG - chr1_1:33240047-33240066 Msa0019150:three_prime_UTR 30.0%
TTGCATGTGATTTATGTTTG+GGG - chr1_1:33240048-33240067 Msa0019150:three_prime_UTR 30.0%
CATTAGTGTAAGTGTAATCA+TGG - chr1_1:33240262-33240281 Msa0019150:three_prime_UTR 30.0%
TGATAAATTGCCTAATCAGT+TGG - chr1_1:33240597-33240616 Msa0019150:intron 30.0%
GATAAATTGCCTAATCAGTT+GGG - chr1_1:33240598-33240617 Msa0019150:intron 30.0%
AAACTTATTCCCAACTGATT+AGG + chr1_1:33240610-33240629 None:intergenic 30.0%
!!! GGAATAAGTTTTAGAGTCAA+GGG - chr1_1:33240619-33240638 Msa0019150:intron 30.0%
!!! GAATAAGTTTTAGAGTCAAG+GGG - chr1_1:33240620-33240639 Msa0019150:intron 30.0%
! TTTAGGATTCATACCTTCTT+AGG + chr1_1:33240865-33240884 None:intergenic 30.0%
TCATATGAAATGTATTTGGC+AGG + chr1_1:33240945-33240964 None:intergenic 30.0%
ATCTGTTTACAAAATGCAGT+AGG + chr1_1:33241045-33241064 None:intergenic 30.0%
TAGAGTTCTCCATTACAAAT+TGG - chr1_1:33241148-33241167 Msa0019150:intron 30.0%
TCAAACAACAATTTGCATCA+GGG + chr1_1:33241319-33241338 None:intergenic 30.0%
TTCAAACAACAATTTGCATC+AGG + chr1_1:33241320-33241339 None:intergenic 30.0%
! TGTTGTTTGAATATTATGGG+AGG - chr1_1:33241329-33241348 Msa0019150:CDS 30.0%
! AGATATTGCTTAGCTTTCAA+AGG - chr1_1:33241398-33241417 Msa0019150:intron 30.0%
CTTGTCTTCACTACAAAAAA+AGG + chr1_1:33241545-33241564 None:intergenic 30.0%
!!! CTTTTTTTGTAGTGAAGACA+AGG - chr1_1:33241543-33241562 Msa0019150:intron 30.0%
TGATTGTGCTAGAATAAACA+TGG - chr1_1:33241811-33241830 Msa0019150:CDS 30.0%
GATTGTGCTAGAATAAACAT+GGG - chr1_1:33241812-33241831 Msa0019150:CDS 30.0%
CATTAAGCAATATGATAAGG+GGG - chr1_1:33241880-33241899 Msa0019150:intron 30.0%
! CCAAACTTTTAAACTTCAGA+AGG + chr1_1:33242167-33242186 None:intergenic 30.0%
!! CCTTCTGAAGTTTAAAAGTT+TGG - chr1_1:33242164-33242183 Msa0019150:CDS 30.0%
TATTGGACAAGTTTGAGAAA+TGG - chr1_1:33242470-33242489 Msa0019150:intron 30.0%
CACAAAGAAAAAATGCACAA+GGG + chr1_1:33242554-33242573 None:intergenic 30.0%
ACACAAAGAAAAAATGCACA+AGG + chr1_1:33242555-33242574 None:intergenic 30.0%
! TTTTTCTTTGTGTCCAGTTT+TGG - chr1_1:33242562-33242581 Msa0019150:CDS 30.0%
! AAAGCTAAACTTGGTAATTC+CGG + chr1_1:33242701-33242720 None:intergenic 30.0%
AATTGCAGTAAAGCTAAACT+TGG + chr1_1:33242710-33242729 None:intergenic 30.0%
AACATGTATAATGCAAGCAT+AGG - chr1_1:33242823-33242842 Msa0019150:intron 30.0%
GATTTCATTCCATAAATACC+GGG + chr1_1:33242881-33242900 None:intergenic 30.0%
AATATAACAGTATCTGATGG+TGG + chr1_1:33242908-33242927 None:intergenic 30.0%
CATGTCATATTCATCTAACA+TGG + chr1_1:33243105-33243124 None:intergenic 30.0%
TAGATGAATATGACATGCTT+AGG - chr1_1:33243108-33243127 Msa0019150:intron 30.0%
ATTTAAGAAAACGTGAGATG+CGG - chr1_1:33243332-33243351 Msa0019150:CDS 30.0%
! AACTCACATTTGCATTTTTG+CGG + chr1_1:33243371-33243390 None:intergenic 30.0%
! TTCCTTTTAATAAGATCCAG+AGG + chr1_1:33243464-33243483 None:intergenic 30.0%
!!! ATCTGCTAATGTTTTTTCAG+AGG - chr1_1:33243537-33243556 Msa0019150:intron 30.0%
AACACTTGGAGTCAATTTAA+TGG + chr1_1:33243806-33243825 None:intergenic 30.0%
ATGAACAATAGAGTTGTCAT+GGG - chr1_1:33244025-33244044 Msa0019150:intron 30.0%
TATATCATTGTTGCTCAGTA+AGG - chr1_1:33244123-33244142 Msa0019150:CDS 30.0%
ATATCATTGTTGCTCAGTAA+GGG - chr1_1:33244124-33244143 Msa0019150:CDS 30.0%
ATCAGAAACTGCAATTTCTT+TGG + chr1_1:33244372-33244391 None:intergenic 30.0%
GTAATTTCAGAAGTAGTTTC+AGG + chr1_1:33244780-33244799 None:intergenic 30.0%
AGACTTACTTACAAGGTTTA+AGG - chr1_1:33244841-33244860 Msa0019150:intron 30.0%
TACTTACAAGGTTTAAGGAA+TGG - chr1_1:33244846-33244865 Msa0019150:intron 30.0%
TTCAAGGTCTTACATTAAGA+TGG - chr1_1:33244902-33244921 Msa0019150:intron 30.0%
! TTTTGATGTTATTACAGCTC+GGG - chr1_1:33245353-33245372 Msa0019150:intron 30.0%
TTGATTGTGTAGGTATGAAG+AGG - chr1_1:33240224-33240243 Msa0019150:three_prime_UTR 35.0%
TGATTGTGTAGGTATGAAGA+GGG - chr1_1:33240225-33240244 Msa0019150:three_prime_UTR 35.0%
ATGGAAAGAAGAAGGAAGAA+AGG - chr1_1:33240316-33240335 Msa0019150:CDS 35.0%
!! AAAAATAAATGGGTTGGGAG+TGG - chr1_1:33240469-33240488 Msa0019150:intron 35.0%
!!! GGGAATAAGTTTTAGAGTCA+AGG - chr1_1:33240618-33240637 Msa0019150:intron 35.0%
!! TATTGCATTTGGTGCAACAA+AGG - chr1_1:33240668-33240687 Msa0019150:intron 35.0%
!! ATTGCATTTGGTGCAACAAA+GGG - chr1_1:33240669-33240688 Msa0019150:intron 35.0%
! GCAAGCTAATTTTATCCACA+AGG - chr1_1:33240837-33240856 Msa0019150:intron 35.0%
GCAGTAGGAAAAGAAAGTAA+TGG + chr1_1:33241030-33241049 None:intergenic 35.0%
GTTTGAATATTATGGGAGGA+TGG - chr1_1:33241333-33241352 Msa0019150:CDS 35.0%
GCAGAGATAAGAAAGTAGTA+AGG + chr1_1:33241369-33241388 None:intergenic 35.0%
! TATTGCTTAGCTTTCAAAGG+TGG - chr1_1:33241401-33241420 Msa0019150:intron 35.0%
CTTTCAAAGGTGGATGTTAA+GGG - chr1_1:33241411-33241430 Msa0019150:intron 35.0%
!!! ACAGTATGATTGGTTGGTTT+TGG + chr1_1:33241439-33241458 None:intergenic 35.0%
AAAACCAACCAATCATACTG+TGG - chr1_1:33241438-33241457 Msa0019150:intron 35.0%
TGAATTTGCCACAGTATGAT+TGG + chr1_1:33241449-33241468 None:intergenic 35.0%
!! TTTTGGATTTGGCTTCTTAG+CGG - chr1_1:33241782-33241801 Msa0019150:intron 35.0%
TATGCAGGTTATGTAGTAGA+AGG - chr1_1:33241843-33241862 Msa0019150:CDS 35.0%
CTGAAATGTTACAGGTAACA+TGG + chr1_1:33242078-33242097 None:intergenic 35.0%
! TCTTTTTATGAAGGCTGAAG+TGG - chr1_1:33242219-33242238 Msa0019150:CDS 35.0%
CATTGAACCAACTGAATTAC+TGG - chr1_1:33242396-33242415 Msa0019150:intron 35.0%
AAAGCCAAAGAAGAAGCTTT+AGG - chr1_1:33242436-33242455 Msa0019150:intron 35.0%
ATAGTGCCTTACCATATTTC+CGG - chr1_1:33242679-33242698 Msa0019150:CDS 35.0%
GTAATTCCGGAAATATGGTA+AGG + chr1_1:33242688-33242707 None:intergenic 35.0%
! ACTTGGTAATTCCGGAAATA+TGG + chr1_1:33242693-33242712 None:intergenic 35.0%
!! TTTTGGTGTAAATGCAGCTT+TGG - chr1_1:33242998-33243017 Msa0019150:intron 35.0%
GATACGTCATTCACATATGA+TGG - chr1_1:33243065-33243084 Msa0019150:intron 35.0%
TCATCTAACATGGCAAGAAT+AGG + chr1_1:33243095-33243114 None:intergenic 35.0%
! AAAAACGAAGAAAGAGCGTA+AGG - chr1_1:33243147-33243166 Msa0019150:intron 35.0%
! GCTTCTGTGAAATCTTTTCA+AGG - chr1_1:33243188-33243207 Msa0019150:CDS 35.0%
TGCCTCTGGATCTTATTAAA+AGG - chr1_1:33243459-33243478 Msa0019150:CDS 35.0%
! TTGTTTTCCCTTGTCCATTA+AGG + chr1_1:33243503-33243522 None:intergenic 35.0%
TTAGCAGATCCTGTTACTAA+GGG + chr1_1:33243526-33243545 None:intergenic 35.0%
ATTAGCAGATCCTGTTACTA+AGG + chr1_1:33243527-33243546 None:intergenic 35.0%
CTTATCAGAACCTGTTGATA+AGG - chr1_1:33243688-33243707 Msa0019150:intron 35.0%
! TTAACTGTTGCAGAGAGTTT+TGG - chr1_1:33243719-33243738 Msa0019150:intron 35.0%
! TAACTGTTGCAGAGAGTTTT+GGG - chr1_1:33243720-33243739 Msa0019150:intron 35.0%
CATGGTAATACAAAGAAGAC+TGG - chr1_1:33243901-33243920 Msa0019150:intron 35.0%
TCAGGCTAATCAAACAAAGA+AGG - chr1_1:33243936-33243955 Msa0019150:intron 35.0%
GATGAACAATAGAGTTGTCA+TGG - chr1_1:33244024-33244043 Msa0019150:intron 35.0%
TGTCAACCACTTTATTGAGT+AGG - chr1_1:33244078-33244097 Msa0019150:intron 35.0%
GTCAACCACTTTATTGAGTA+GGG - chr1_1:33244079-33244098 Msa0019150:intron 35.0%
TATCATTGTTGCTCAGTAAG+GGG - chr1_1:33244125-33244144 Msa0019150:CDS 35.0%
AAATCGATACGGTATGAAGT+CGG + chr1_1:33244230-33244249 None:intergenic 35.0%
!!! ACTTCATACCGTATCGATTT+TGG - chr1_1:33244230-33244249 Msa0019150:intron 35.0%
ATAAGACGCCAAAATCGATA+CGG + chr1_1:33244241-33244260 None:intergenic 35.0%
TTCTCTACTGTTTAAGCAGA+TGG - chr1_1:33244311-33244330 Msa0019150:intron 35.0%
TGCAGTTTCTGATAAGATGA+TGG - chr1_1:33244379-33244398 Msa0019150:intron 35.0%
AGTTGTATTATCTTAGCGTG+TGG - chr1_1:33244730-33244749 Msa0019150:intron 35.0%
TTTCAGGGAAAGAAACATGA+TGG + chr1_1:33244764-33244783 None:intergenic 35.0%
ATATCATCTGACAGTGCTTT+CGG - chr1_1:33245055-33245074 Msa0019150:intron 35.0%
AGAATAGGGAAAGAGTTACA+CGG + chr1_1:33245182-33245201 None:intergenic 35.0%
TATATGGTTCACGTTCTCAA+AGG - chr1_1:33245436-33245455 Msa0019150:intron 35.0%
TGCTCTTACCTATTGATGTT+TGG - chr1_1:33245660-33245679 Msa0019150:intron 35.0%
CTTACCTATTGATGTTTGGT+AGG - chr1_1:33245664-33245683 Msa0019150:intron 35.0%
TGTTTGGTAGGAGTGAAATT+AGG - chr1_1:33245676-33245695 Msa0019150:intron 35.0%
CAAGAGAAGATTGATGCAGA+TGG - chr1_1:33240297-33240316 Msa0019150:exon 40.0%
TGATGCAGATGGAAAGAAGA+AGG - chr1_1:33240308-33240327 Msa0019150:CDS 40.0%
AGGAATGCATTGTTCAAAGC+TGG - chr1_1:33240336-33240355 Msa0019150:intron 40.0%
GAGACATTACCTCAAACACT+TGG + chr1_1:33240501-33240520 None:intergenic 40.0%
TGCTTAAAGAGATCACAGAC+AGG - chr1_1:33240713-33240732 Msa0019150:CDS 40.0%
ATCACTTCTAACCACTCCTT+CGG + chr1_1:33241257-33241276 None:intergenic 40.0%
GCTTTCAAAGGTGGATGTTA+AGG - chr1_1:33241410-33241429 Msa0019150:intron 40.0%
TTTGCCACAGTATGATTGGT+TGG + chr1_1:33241445-33241464 None:intergenic 40.0%
AGACCATATAGCCTAGAGTA+TGG + chr1_1:33241601-33241620 None:intergenic 40.0%
GTCTGATCTCCATCTTACAT+TGG - chr1_1:33241617-33241636 Msa0019150:intron 40.0%
ATGGTTGTGTATTAACCTGC+TGG - chr1_1:33241663-33241682 Msa0019150:intron 40.0%
!!! GGACAGGTCTTTGTTTTACA+AGG - chr1_1:33241688-33241707 Msa0019150:intron 40.0%
ACAAACCACCTTATCAGTCA+AGG - chr1_1:33241714-33241733 Msa0019150:intron 40.0%
!! TGCTGCATTTAGAGGTATCA+AGG - chr1_1:33241739-33241758 Msa0019150:intron 40.0%
! ACATGGGTTATGACTTATGC+AGG - chr1_1:33241828-33241847 Msa0019150:CDS 40.0%
!! GCGGTTGTAGTTTGATTTGA+AGG - chr1_1:33241970-33241989 Msa0019150:intron 40.0%
GACAGAAGCTGAAATGTTAC+AGG + chr1_1:33242086-33242105 None:intergenic 40.0%
GTCAATGAAGTCACTATTCC+TGG - chr1_1:33242103-33242122 Msa0019150:intron 40.0%
TTGACCAACTTAAAGCAAGC+AGG - chr1_1:33242254-33242273 Msa0019150:intron 40.0%
! TCATCCTGCTTGCTTTAAGT+TGG + chr1_1:33242261-33242280 None:intergenic 40.0%
ACTTAAAGCAAGCAGGATGA+AGG - chr1_1:33242261-33242280 Msa0019150:intron 40.0%
TTGTCAGCCAGTAATTCAGT+TGG + chr1_1:33242406-33242425 None:intergenic 40.0%
TTGGCCTAAAGCTTCTTCTT+TGG + chr1_1:33242443-33242462 None:intergenic 40.0%
CAGAGAATTCCCGGTATTTA+TGG - chr1_1:33242869-33242888 Msa0019150:intron 40.0%
! TGCAGCTTTGGTTGATACAT+TGG - chr1_1:33243010-33243029 Msa0019150:intron 40.0%
ATGACATGCTTAGGCATGAA+CGG - chr1_1:33243117-33243136 Msa0019150:intron 40.0%
TGCTTCTTTGAGTGCCTTAA+TGG - chr1_1:33243486-33243505 Msa0019150:intron 40.0%
! TTTGAGTGCCTTAATGGACA+AGG - chr1_1:33243492-33243511 Msa0019150:intron 40.0%
! TTGAGTGCCTTAATGGACAA+GGG - chr1_1:33243493-33243512 Msa0019150:intron 40.0%
GGAAAACAACCCTTAGTAAC+AGG - chr1_1:33243514-33243533 Msa0019150:intron 40.0%
! GAACCTGTTGATAAGGCAAA+AGG - chr1_1:33243695-33243714 Msa0019150:intron 40.0%
! AAGCCTTTTGCCTTATCAAC+AGG + chr1_1:33243701-33243720 None:intergenic 40.0%
!!! AGAGAGTTTTGGGATTTCAC+AGG - chr1_1:33243730-33243749 Msa0019150:intron 40.0%
AAGAAGGAAAAGAAGCTGTG+AGG - chr1_1:33243952-33243971 Msa0019150:intron 40.0%
AGAAGGAAAAGAAGCTGTGA+GGG - chr1_1:33243953-33243972 Msa0019150:intron 40.0%
GTTCATCAAGATGTGACACT+TGG + chr1_1:33244011-33244030 None:intergenic 40.0%
CAAGACCCTACTCAATAAAG+TGG + chr1_1:33244087-33244106 None:intergenic 40.0%
! ACGTTGTAGACTCTAAAGAG+TGG - chr1_1:33244188-33244207 Msa0019150:intron 40.0%
CGGTATGAAGTCGGAAATAT+GGG + chr1_1:33244221-33244240 None:intergenic 40.0%
ACGGTATGAAGTCGGAAATA+TGG + chr1_1:33244222-33244241 None:intergenic 40.0%
ACTGTTTAAGCAGATGGAGA+TGG - chr1_1:33244317-33244336 Msa0019150:intron 40.0%
CTGTTTAAGCAGATGGAGAT+GGG - chr1_1:33244318-33244337 Msa0019150:intron 40.0%
GATGGGAAAACTCATACACA+AGG - chr1_1:33244335-33244354 Msa0019150:intron 40.0%
!! GGCTTTGAGACTTACTTACA+AGG - chr1_1:33244834-33244853 Msa0019150:intron 40.0%
! ACACTTACCTTTTTCTTGGC+AGG - chr1_1:33244965-33244984 Msa0019150:intron 40.0%
AAAGCTTATTCCTACCTGTG+AGG + chr1_1:33245018-33245037 None:intergenic 40.0%
TTTGATGCGATTCTCCCTTT+GGG + chr1_1:33245131-33245150 None:intergenic 40.0%
AGAATACTGAAAATGTCGGC+AGG - chr1_1:33245150-33245169 Msa0019150:intron 40.0%
TTGTAGTTGAGCCATAGTTG+TGG - chr1_1:33245587-33245606 Msa0019150:intron 40.0%
GGTAAGAGCAGAAATGAACT+TGG + chr1_1:33245650-33245669 None:intergenic 40.0%
CACTCCTACCAAACATCAAT+AGG + chr1_1:33245671-33245690 None:intergenic 40.0%
TAGGAGTGAAATTAGGCAAG+AGG - chr1_1:33245683-33245702 Msa0019150:intron 40.0%
! ATGGTAATGAGGAACAAGGG+TGG - chr1_1:33239901-33239920 Msa0019150:three_prime_UTR 45.0%
! AAGGGTGGTAATGAGGAACA+AGG - chr1_1:33239916-33239935 Msa0019150:three_prime_UTR 45.0%
! AGGGTGGTAATGAGGAACAA+GGG - chr1_1:33239917-33239936 Msa0019150:three_prime_UTR 45.0%
!!! GTTTTAGAGTCAAGGGGATG+AGG - chr1_1:33240626-33240645 Msa0019150:intron 45.0%
TACCACATCTTTCCTGTGAC+AGG - chr1_1:33240798-33240817 Msa0019150:intron 45.0%
AACCTGTCACAGGAAAGATG+TGG + chr1_1:33240803-33240822 None:intergenic 45.0%
ACATCTTTCCTGTGACAGGT+TGG - chr1_1:33240802-33240821 Msa0019150:intron 45.0%
! TATCCACAAGGCACCTAAGA+AGG - chr1_1:33240849-33240868 Msa0019150:intron 45.0%
ATACCTTCTTAGGTGCCTTG+TGG + chr1_1:33240855-33240874 None:intergenic 45.0%
CATAATCTCTGTTGGTCCGA+AGG - chr1_1:33241238-33241257 Msa0019150:CDS 45.0%
GGTTTCCTTCACCTGTTGTT+AGG - chr1_1:33241502-33241521 Msa0019150:intron 45.0%
GCAAACCTAACAACAGGTGA+AGG + chr1_1:33241510-33241529 None:intergenic 45.0%
GCACAAGCAAACCTAACAAC+AGG + chr1_1:33241516-33241535 None:intergenic 45.0%
ATCATGCACGACCATACTCT+AGG - chr1_1:33241587-33241606 Msa0019150:intron 45.0%
CGACCATACTCTAGGCTATA+TGG - chr1_1:33241595-33241614 Msa0019150:intron 45.0%
TTGTGTATTAACCTGCTGGC+AGG - chr1_1:33241667-33241686 Msa0019150:intron 45.0%
!! TCAAGGCTTGCTGCATTTAG+AGG - chr1_1:33241731-33241750 Msa0019150:intron 45.0%
TGCTGCAAGAGAGAAGATCA+TGG - chr1_1:33242354-33242373 Msa0019150:intron 45.0%
!! GCTGGCTTGAGGACTATAAT+CGG - chr1_1:33242515-33242534 Msa0019150:intron 45.0%
! CTGGCTTGAGGACTATAATC+GGG - chr1_1:33242516-33242535 Msa0019150:intron 45.0%
TCAAACGAGCAGAGAATTCC+CGG - chr1_1:33242860-33242879 Msa0019150:intron 45.0%
TGGTTGCCAAAACACATGCA+TGG - chr1_1:33243030-33243049 Msa0019150:intron 45.0%
GGTTGCCAAAACACATGCAT+GGG - chr1_1:33243031-33243050 Msa0019150:intron 45.0%
! CTCTTCCCATGCATGTGTTT+TGG + chr1_1:33243039-33243058 None:intergenic 45.0%
TGACATGCTTAGGCATGAAC+GGG - chr1_1:33243118-33243137 Msa0019150:intron 45.0%
TAAGAAAACGTGAGATGCGG+AGG - chr1_1:33243335-33243354 Msa0019150:CDS 45.0%
ACTGAGTCTGTGTCTGATCA+TGG - chr1_1:33243883-33243902 Msa0019150:intron 45.0%
AACAGAGTCATACCAGTGGT+TGG + chr1_1:33243983-33244002 None:intergenic 45.0%
GAAGAACAGAGTCATACCAG+TGG + chr1_1:33243987-33244006 None:intergenic 45.0%
! CAGTAAGGGGTATATTGCTC+AGG - chr1_1:33244138-33244157 Msa0019150:CDS 45.0%
GCAATACAGCAGAAGGTTGA+GGG + chr1_1:33244525-33244544 None:intergenic 45.0%
TCTAGAGGCAATACAGCAGA+AGG + chr1_1:33244532-33244551 None:intergenic 45.0%
! CTGTATTGCCTCTAGAAGCT+TGG - chr1_1:33244536-33244555 Msa0019150:intron 45.0%
TAGAAGCTTGGCTACAGGTA+CGG - chr1_1:33244548-33244567 Msa0019150:intron 45.0%
! TCTTTAACACGAGTTGGGAC+TGG - chr1_1:33244688-33244707 Msa0019150:intron 45.0%
TCAAGCACCTGCCAAGAAAA+AGG + chr1_1:33244975-33244994 None:intergenic 45.0%
TGGCAGGTGCTTGATGAAAT+CGG - chr1_1:33244981-33245000 Msa0019150:intron 45.0%
AGTTATCAGCAGCTCCCAAA+GGG - chr1_1:33245114-33245133 Msa0019150:intron 45.0%
CTTTGATGCGATTCTCCCTT+TGG + chr1_1:33245132-33245151 None:intergenic 45.0%
!! TGATGACCTTGAGAAGCGTT+TGG - chr1_1:33245379-33245398 Msa0019150:intron 45.0%
!! AATATTTAAAAAGAATAATT+AGG + chr1_1:33243222-33243241 None:intergenic 5.0%
!! TATAATATATTAAATTTATG+AGG - chr1_1:33245545-33245564 Msa0019150:intron 5.0%
! GAGGAACAAGGGTGGTAATG+AGG - chr1_1:33239909-33239928 Msa0019150:three_prime_UTR 50.0%
TTAGAGTCAAGGGGATGAGG+AGG - chr1_1:33240629-33240648 Msa0019150:intron 50.0%
TCACATCACCAACCTGTCAC+AGG + chr1_1:33240813-33240832 None:intergenic 50.0%
TATTAACCTGCTGGCAGGAC+AGG - chr1_1:33241672-33241691 Msa0019150:intron 50.0%
GCAAGCCTTGACTGATAAGG+TGG + chr1_1:33241722-33241741 None:intergenic 50.0%
GCAGCAAGCCTTGACTGATA+AGG + chr1_1:33241725-33241744 None:intergenic 50.0%
TATTCCTGGTGCACTTGCTC+TGG - chr1_1:33242117-33242136 Msa0019150:intron 50.0%
! TGCTCTGGATCTGATTGAGC+AGG - chr1_1:33242132-33242151 Msa0019150:intron 50.0%
CAGCATGTGAAGAAGAGAGC+TGG - chr1_1:33242497-33242516 Msa0019150:intron 50.0%
!! TGAAGAAGAGAGCTGGCTTG+AGG - chr1_1:33242504-33242523 Msa0019150:intron 50.0%
!! GTGTCCAGTTTTGGTGAGAG+AGG - chr1_1:33242571-33242590 Msa0019150:CDS 50.0%
CTCACCTCTCTCACCAAAAC+TGG + chr1_1:33242578-33242597 None:intergenic 50.0%
GGGAATTCTCTGCTCGTTTG+AGG + chr1_1:33242861-33242880 None:intergenic 50.0%
!! GACTGGTGCTGCTTATGATC+AGG - chr1_1:33243918-33243937 Msa0019150:intron 50.0%
! GGTGTCGCAGGTCAATTAGT+TGG - chr1_1:33244416-33244435 Msa0019150:intron 50.0%
GTCATCGCTGAAGAAACTGC+AGG + chr1_1:33244443-33244462 None:intergenic 50.0%
AGAATTTCTCAGCTCCAGCG+CGG + chr1_1:33244468-33244487 None:intergenic 50.0%
!! AGAAGGTTGAGGGCACTTGT+GGG + chr1_1:33244515-33244534 None:intergenic 50.0%
GGCAATACAGCAGAAGGTTG+AGG + chr1_1:33244526-33244545 None:intergenic 50.0%
ACCTGTAGCCAAGCTTCTAG+AGG + chr1_1:33244547-33244566 None:intergenic 50.0%
! TAACACGAGTTGGGACTGGT+TGG - chr1_1:33244692-33244711 Msa0019150:intron 50.0%
!! AACACGAGTTGGGACTGGTT+GGG - chr1_1:33244693-33244712 Msa0019150:intron 50.0%
GGTGCTTGATGAAATCGGTG+TGG - chr1_1:33244986-33245005 Msa0019150:intron 50.0%
CAGTTATCAGCAGCTCCCAA+AGG - chr1_1:33245113-33245132 Msa0019150:intron 50.0%
!! TGACCTTGAGAAGCGTTTGG+CGG - chr1_1:33245382-33245401 Msa0019150:intron 50.0%
GCAAGAGGAGAACGATAGTG+AGG - chr1_1:33245698-33245717 Msa0019150:intron 50.0%
TGGCGCTCACCAAGTGTTTG+AGG - chr1_1:33240489-33240508 Msa0019150:intron 55.0%
TCTCTGTTGGTCCGAAGGAG+TGG - chr1_1:33241243-33241262 Msa0019150:CDS 55.0%
AGATCCAGAGCAAGTGCACC+AGG + chr1_1:33242124-33242143 None:intergenic 55.0%
GAAAACGTGAGATGCGGAGG+AGG - chr1_1:33243338-33243357 Msa0019150:CDS 55.0%
TGTGAGGGAACACCAACCAC+TGG - chr1_1:33243968-33243987 Msa0019150:intron 55.0%
ATTGACCTGCGACACCAGCA+GGG + chr1_1:33244412-33244431 None:intergenic 55.0%
AATTGACCTGCGACACCAGC+AGG + chr1_1:33244413-33244432 None:intergenic 55.0%
!! CAGAAGGTTGAGGGCACTTG+TGG + chr1_1:33244516-33244535 None:intergenic 55.0%
! GCCTCTAGAAGCTTGGCTAC+AGG - chr1_1:33244543-33244562 Msa0019150:intron 55.0%
!! GAGTTGGGACTGGTTGGGAT+TGG - chr1_1:33244698-33244717 Msa0019150:intron 55.0%
GTGGATGTTGCCTCACAGGT+AGG - chr1_1:33245005-33245024 Msa0019150:intron 55.0%
CAAAGACCTGTCCTGCCAGC+AGG + chr1_1:33241681-33241700 None:intergenic 60.0%
ATGATGGCAGTTGCCCCTGC+TGG - chr1_1:33244395-33244414 Msa0019150:intron 60.0%
TTGACCTGCGACACCAGCAG+GGG + chr1_1:33244411-33244430 None:intergenic 60.0%
ATTTCTCAGCTCCAGCGCGG+TGG + chr1_1:33244465-33244484 None:intergenic 60.0%
CGGTGTGGATGTTGCCTCAC+AGG - chr1_1:33245001-33245020 Msa0019150:intron 60.0%
GAGCCGCCAAACGCTTCTCA+AGG + chr1_1:33245388-33245407 None:intergenic 60.0%
TTCAGCGATGACCACCGCGC+TGG - chr1_1:33244451-33244470 Msa0019150:intron 65.0%
!! GTTGCCCCTGCTGGTGTCGC+AGG - chr1_1:33244404-33244423 Msa0019150:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 33239901 33245821 33239901 ID=Msa0019150;Name=Msa0019150
chr1_1 mRNA 33239901 33245821 33239901 ID=Msa0019150-mRNA-1;Parent=Msa0019150;Name=Msa0019150-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0.57|0.6|1|0.64|0.6|15|400|433
chr1_1 exon 33239901 33240352 33239901 ID=Msa0019150-mRNA-1:exon:10635;Parent=Msa0019150-mRNA-1
chr1_1 exon 33240551 33240606 33240551 ID=Msa0019150-mRNA-1:exon:10634;Parent=Msa0019150-mRNA-1
chr1_1 exon 33240700 33240735 33240700 ID=Msa0019150-mRNA-1:exon:10633;Parent=Msa0019150-mRNA-1
chr1_1 exon 33241229 33241392 33241229 ID=Msa0019150-mRNA-1:exon:10632;Parent=Msa0019150-mRNA-1
chr1_1 exon 33241800 33241878 33241800 ID=Msa0019150-mRNA-1:exon:10631;Parent=Msa0019150-mRNA-1
chr1_1 exon 33241971 33242045 33241971 ID=Msa0019150-mRNA-1:exon:10630;Parent=Msa0019150-mRNA-1
chr1_1 exon 33242164 33242241 33242164 ID=Msa0019150-mRNA-1:exon:10629;Parent=Msa0019150-mRNA-1
chr1_1 exon 33242559 33242611 33242559 ID=Msa0019150-mRNA-1:exon:10628;Parent=Msa0019150-mRNA-1
chr1_1 exon 33242617 33242707 33242617 ID=Msa0019150-mRNA-1:exon:10627;Parent=Msa0019150-mRNA-1
chr1_1 exon 33243185 33243490 33243185 ID=Msa0019150-mRNA-1:exon:10626;Parent=Msa0019150-mRNA-1
chr1_1 exon 33243569 33243624 33243569 ID=Msa0019150-mRNA-1:exon:10625;Parent=Msa0019150-mRNA-1
chr1_1 exon 33243970 33244033 33243970 ID=Msa0019150-mRNA-1:exon:10624;Parent=Msa0019150-mRNA-1
chr1_1 exon 33244106 33244198 33244106 ID=Msa0019150-mRNA-1:exon:10623;Parent=Msa0019150-mRNA-1
chr1_1 exon 33244852 33244902 33244852 ID=Msa0019150-mRNA-1:exon:10622;Parent=Msa0019150-mRNA-1
chr1_1 exon 33245774 33245821 33245774 ID=Msa0019150-mRNA-1:exon:10621;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33245774 33245821 33245774 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33244852 33244902 33244852 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33244106 33244198 33244106 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33243970 33244033 33243970 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33243569 33243624 33243569 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33243185 33243490 33243185 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33242617 33242707 33242617 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33242559 33242611 33242559 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33242164 33242241 33242164 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33241971 33242045 33241971 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33241800 33241878 33241800 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33241229 33241392 33241229 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33240700 33240735 33240700 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33240551 33240606 33240551 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 CDS 33240301 33240352 33240301 ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1
chr1_1 three_prime_UTR 33239901 33240300 33239901 ID=Msa0019150-mRNA-1:three_prime_utr;Parent=Msa0019150-mRNA-1
Gene Sequence

>Msa0019150

ATGGTAATGAGGAACAAGGGTGGTAATGAGGAACAAGGGTTAAGAGCTGTTGGTGATGTGAAGCAGCAAGCTAATTTTATCCACAAGGCACCTAAGAAGGTTTGCTTGTGCACAAATCCTTTTTTTGTAGTGAAGACAAGGTTGCAGCTTCAAACACTCTTCATCATGCACGACCATACTCTAGGCTATATGGACAGGTCTTTGTTTTACAAGGTTTACAAACCACCTTATCAGTCAAGGCTTGCTGCATTTAGAGCTTCTGTCAATGAAGTCACTATTCCTGGTGCACTTGCTCTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGACCAACTTAAAGCAAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAACTTGAAGAGATATTTGCTAATGCTCATATAGAAATAGATTCGGATGCTGCAAGAGAGAAGATCATGGCATTGATTGATTCTAGAGACATTGAACCAACTGAATTACTGGCTGACAATCAAATAGCAAAAGCCAAAGAAGAAGCTTTAGGCCAAAAAGATATATTGGACAAGTTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGCTGGCTTGAGGACTATAATCGGCTTTGGTTGATACATTGGTTGCCAAAACACATGCATGGGAAGAGACTCATGATACGTCATTCACATATGATGGTATTCCTATTCTTGCCATATGAATATGACATGCTTAGGCATGAACGGGAAGAAGAAAAACGAAGAAAGAGCGAAAATGCTTCTTTGAGTGCCTTAATGGACAAGGGAAAACAACCCTTAGTAACAGGATCTGCTAATGTTTTTTCAGAGGATGTTATCTGCTTATCAGAACCTGTTGATAAGGCAAAAGGCTTAACTGTTGCAGAGAGTTTTGGGATTTCACAGGATTTGATGTCTAGATTTGATACTGCTGCTGCACAGACTACTGAGTCTGTGTCTGATCATGGTAATACAAAGAAGACTGATGGAGATGGGAAAACTCATACACAAGGTAGTCAAGTTTCCAAAGAAATTGCAGTTTCTGATAAGATGATGGCAGTTGCCCCTGCTGGTGTCGCAGGTCAATTAGTTGGACCTGCAGTTTCTTCAGCGATGACCACCGCGCTGGAGCTGAGAAATTCTTCCAGTGTGCTTGATGAAATCGGTGTGGATGTTGCCTCACAGTTATCAGCAGCTCCCAAAGGGAGAATCGCATCAAAGAATACTGAAAATGTCGGCAGCTCGGGCGTTGATGACCTTGAGAAGCGTTTGGCGGCTCTAAGAAACCCATAA

Protein sequence

>Msa0019150

MVMRNKGGNEEQGLRAVGDVKQQANFIHKAPKKVCLCTNPFFVVKTRLQLQTLFIMHDHTLGYMDRSLFYKVYKPPYQSRLAAFRASVNEVTIPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQAELEEIFANAHIEIDSDAAREKIMALIDSRDIEPTELLADNQIAKAKEEALGQKDILDKFEKWMSACEEESWLEDYNRLWLIHWLPKHMHGKRLMIRHSHMMVFLFLPYEYDMLRHEREEEKRRKSENASLSALMDKGKQPLVTGSANVFSEDVICLSEPVDKAKGLTVAESFGISQDLMSRFDTAAAQTTESVSDHGNTKKTDGDGKTHTQGSQVSKEIAVSDKMMAVAPAGVAGQLVGPAVSSAMTTALELRNSSSVLDEIGVDVASQLSAAPKGRIASKNTENVGSSGVDDLEKRLAALRNP*