Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019150 | sp|Q9FLP0|MA651_ARATH | 77.236 | 123 | 26 | 1 | 86 | 206 | 280 | 402 | 4.53e-56 | 197 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0019150 | Msa0303910 | 0.811765 | 5.942787e-51 | -8.615850e-47 |
Msa0019150 | Msa0602390 | 0.803644 | 3.158876e-49 | -8.615850e-47 |
Msa0019150 | Msa0925290 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
Msa0019150 | Msa0987240 | 0.800086 | 1.699339e-48 | -8.615850e-47 |
Msa0019150 | Msa1083300 | 0.815454 | 9.167707e-52 | -8.615850e-47 |
Msa0019150 | Msa1288550 | 0.805668 | 1.194754e-49 | -8.615850e-47 |
Msa0019150 | Msa1356370 | 0.812763 | 3.600079e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019150 | MtrunA17_Chr5g0444881 | 62.381 | 210 | 41 | 6 | 75 | 246 | 265 | 474 | 5.18e-63 | 213 |
Msa0019150 | MtrunA17_Chr8g0354131 | 40.385 | 208 | 91 | 5 | 86 | 260 | 280 | 487 | 2.37e-34 | 134 |
Msa0019150 | MtrunA17_Chr1g0164981 | 40.367 | 218 | 97 | 5 | 86 | 270 | 290 | 507 | 4.59e-34 | 134 |
Msa0019150 | MtrunA17_Chr1g0188201 | 47.727 | 132 | 67 | 1 | 77 | 206 | 269 | 400 | 1.01e-29 | 122 |
Msa0019150 | MtrunA17_Chr3g0122591 | 34.940 | 249 | 115 | 8 | 52 | 253 | 245 | 493 | 9.08e-29 | 119 |
Msa0019150 | MtrunA17_Chr8g0345241 | 36.652 | 221 | 112 | 8 | 81 | 276 | 274 | 491 | 3.23e-28 | 116 |
Msa0019150 | MtrunA17_Chr6g0476051 | 46.212 | 132 | 66 | 2 | 77 | 206 | 271 | 399 | 4.21e-26 | 111 |
Msa0019150 | MtrunA17_Chr7g0275321 | 63.333 | 90 | 33 | 0 | 312 | 401 | 179 | 268 | 1.93e-25 | 107 |
Msa0019150 | MtrunA17_Chr7g0261511 | 91.489 | 47 | 4 | 0 | 387 | 433 | 166 | 212 | 8.63e-23 | 95.9 |
Msa0019150 | MtrunA17_Chr7g0245851 | 41.538 | 130 | 71 | 2 | 79 | 206 | 624 | 750 | 1.80e-21 | 97.4 |
Msa0019150 | MtrunA17_Chr1g0183621 | 80.000 | 50 | 10 | 0 | 384 | 433 | 167 | 216 | 2.98e-19 | 85.9 |
Msa0019150 | MtrunA17_Chr2g0303251 | 65.385 | 52 | 14 | 1 | 384 | 431 | 163 | 214 | 2.32e-13 | 68.9 |
Msa0019150 | MtrunA17_Chr8g0347741 | 46.053 | 76 | 41 | 0 | 312 | 387 | 183 | 258 | 7.44e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019150 | AT5G55230.3 | 77.236 | 123 | 26 | 1 | 86 | 206 | 280 | 402 | 4.61e-57 | 197 |
Msa0019150 | AT5G55230.1 | 77.236 | 123 | 26 | 1 | 86 | 206 | 280 | 402 | 4.61e-57 | 197 |
Msa0019150 | AT4G26760.1 | 56.158 | 203 | 56 | 3 | 86 | 255 | 280 | 482 | 9.37e-57 | 197 |
Msa0019150 | AT5G55230.2 | 62.500 | 152 | 26 | 2 | 86 | 206 | 280 | 431 | 3.75e-51 | 182 |
Msa0019150 | AT2G01910.2 | 46.154 | 143 | 67 | 2 | 65 | 205 | 236 | 370 | 1.16e-30 | 124 |
Msa0019150 | AT2G01910.1 | 46.154 | 143 | 67 | 2 | 65 | 205 | 277 | 411 | 1.85e-30 | 124 |
Msa0019150 | AT2G38720.1 | 54.386 | 114 | 50 | 1 | 95 | 206 | 281 | 394 | 5.12e-30 | 122 |
Msa0019150 | AT1G14690.1 | 35.160 | 219 | 109 | 4 | 85 | 270 | 289 | 507 | 4.62e-29 | 120 |
Msa0019150 | AT1G14690.2 | 35.160 | 219 | 109 | 4 | 85 | 270 | 289 | 507 | 4.62e-29 | 120 |
Msa0019150 | AT5G51600.1 | 46.212 | 132 | 69 | 1 | 77 | 206 | 272 | 403 | 4.77e-27 | 114 |
Msa0019150 | AT1G27920.1 | 34.426 | 244 | 113 | 7 | 63 | 273 | 272 | 501 | 6.28e-27 | 113 |
Msa0019150 | AT1G27920.2 | 42.568 | 148 | 74 | 3 | 62 | 207 | 271 | 409 | 7.16e-27 | 112 |
Msa0019150 | AT5G62250.2 | 36.041 | 197 | 92 | 5 | 86 | 248 | 282 | 478 | 2.13e-21 | 97.1 |
Msa0019150 | AT5G62250.1 | 36.041 | 197 | 92 | 5 | 86 | 248 | 282 | 478 | 2.13e-21 | 97.1 |
Msa0019150 | AT3G60840.1 | 44.167 | 120 | 65 | 1 | 89 | 206 | 280 | 399 | 1.57e-20 | 94.7 |
Msa0019150 | AT1G03950.1 | 70.833 | 48 | 14 | 0 | 384 | 431 | 163 | 210 | 5.89e-16 | 77.0 |
Find 99 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTTCTTTGAGTGCCTTAA+TGG | 0.148948 | 1_1:-33242214 | Msa0019150:CDS |
ATAACTACAGCCAAAATTTA+TGG | 0.170867 | 1_1:+33240284 | None:intergenic |
TTTAGGATTCATACCTTCTT+AGG | 0.185148 | 1_1:+33244838 | None:intergenic |
TCTAAGAAACCCATAAATTT+TGG | 0.196836 | 1_1:-33240294 | Msa0019150:exon |
CTCTTCCCATGCATGTGTTT+TGG | 0.219325 | 1_1:+33242664 | None:intergenic |
ATCAGAAACTGCAATTTCTT+TGG | 0.234190 | 1_1:+33241331 | None:intergenic |
TTGGCCTAAAGCTTCTTCTT+TGG | 0.263013 | 1_1:+33243260 | None:intergenic |
TTAACTGTTGCAGAGAGTTT+TGG | 0.285846 | 1_1:-33241981 | Msa0019150:CDS |
CTTTGATGCGATTCTCCCTT+TGG | 0.296629 | 1_1:+33240571 | None:intergenic |
CATTGAACCAACTGAATTAC+TGG | 0.310358 | 1_1:-33243304 | Msa0019150:CDS |
CGACCATACTCTAGGCTATA+TGG | 0.316135 | 1_1:-33244105 | Msa0019150:intron |
TCAAGGCTTGCTGCATTTAG+AGG | 0.327349 | 1_1:-33243969 | Msa0019150:intron |
TGCTCTTACCTATTGATGTT+TGG | 0.330713 | 1_1:-33240040 | Msa0019150:three_prime_UTR |
TAACTACAGCCAAAATTTAT+GGG | 0.343069 | 1_1:+33240285 | None:intergenic |
ATTAGCAGATCCTGTTACTA+AGG | 0.346276 | 1_1:+33242176 | None:intergenic |
TGTTTGGTAGGAGTGAAATT+AGG | 0.354521 | 1_1:-33240024 | Msa0019150:three_prime_UTR |
TTTGATGCGATTCTCCCTTT+GGG | 0.378697 | 1_1:+33240572 | None:intergenic |
TATTCCTGGTGCACTTGCTC+TGG | 0.380985 | 1_1:-33243583 | Msa0019150:CDS |
GTCAATGAAGTCACTATTCC+TGG | 0.394176 | 1_1:-33243597 | Msa0019150:CDS |
GGAAAACAACCCTTAGTAAC+AGG | 0.395828 | 1_1:-33242186 | Msa0019150:CDS |
ACATATATATTCCACAACTA+TGG | 0.400628 | 1_1:+33240102 | None:intergenic |
TATAATATATTAAATTTATG+AGG | 0.404847 | 1_1:-33240155 | Msa0019150:three_prime_UTR |
CACTCCTACCAAACATCAAT+AGG | 0.421877 | 1_1:+33240032 | None:intergenic |
TGATGACCTTGAGAAGCGTT+TGG | 0.421971 | 1_1:-33240321 | Msa0019150:CDS |
GTTGCCCCTGCTGGTGTCGC+AGG | 0.424600 | 1_1:-33241296 | Msa0019150:CDS |
CTTACCTATTGATGTTTGGT+AGG | 0.431148 | 1_1:-33240036 | Msa0019150:three_prime_UTR |
TCATCCTGCTTGCTTTAAGT+TGG | 0.434157 | 1_1:+33243442 | None:intergenic |
TATATATCATCATTATTTCA+AGG | 0.437314 | 1_1:+33240174 | None:intergenic |
AATTGACCTGCGACACCAGC+AGG | 0.437591 | 1_1:+33241290 | None:intergenic |
TATTGGACAAGTTTGAGAAA+TGG | 0.439573 | 1_1:-33243230 | Msa0019150:CDS |
GCTGGCTTGAGGACTATAAT+CGG | 0.444875 | 1_1:-33243185 | Msa0019150:CDS |
CTTATCAGAACCTGTTGATA+AGG | 0.450224 | 1_1:-33242012 | Msa0019150:CDS |
AAAGCCAAAGAAGAAGCTTT+AGG | 0.457201 | 1_1:-33243264 | Msa0019150:CDS |
CGGTGTGGATGTTGCCTCAC+AGG | 0.459435 | 1_1:-33240699 | Msa0019150:intron |
TATCCACAAGGCACCTAAGA+AGG | 0.467591 | 1_1:-33244851 | Msa0019150:intron |
TCATCTAACATGGCAAGAAT+AGG | 0.469444 | 1_1:+33242608 | None:intergenic |
TTTGGTTCAATATGGTAATG+AGG | 0.482030 | 1_1:-33245810 | None:intergenic |
TGGCAGGTGCTTGATGAAAT+CGG | 0.487944 | 1_1:-33240719 | Msa0019150:intron |
TGACATGCTTAGGCATGAAC+GGG | 0.488552 | 1_1:-33242582 | Msa0019150:CDS |
ACTGTTTAAGCAGATGGAGA+TGG | 0.489746 | 1_1:-33241383 | Msa0019150:intron |
AGACCATATAGCCTAGAGTA+TGG | 0.490132 | 1_1:+33244102 | None:intergenic |
GAACCTGTTGATAAGGCAAA+AGG | 0.495619 | 1_1:-33242005 | Msa0019150:CDS |
TGCAGTTTCTGATAAGATGA+TGG | 0.495839 | 1_1:-33241321 | Msa0019150:CDS |
TGCTCATATAGAAATAGATT+CGG | 0.505688 | 1_1:-33243370 | Msa0019150:CDS |
TTCAGCGATGACCACCGCGC+TGG | 0.513035 | 1_1:-33241249 | Msa0019150:CDS |
GATACGTCATTCACATATGA+TGG | 0.515883 | 1_1:-33242635 | Msa0019150:CDS |
TAGATGAATATGACATGCTT+AGG | 0.517226 | 1_1:-33242592 | Msa0019150:CDS |
AGATCCAGAGCAAGTGCACC+AGG | 0.523988 | 1_1:+33243579 | None:intergenic |
TGCAGCTTTGGTTGATACAT+TGG | 0.533646 | 1_1:-33242690 | Msa0019150:intron |
GCAGCAAGCCTTGACTGATA+AGG | 0.534526 | 1_1:+33243978 | None:intergenic |
CTGTTTAAGCAGATGGAGAT+GGG | 0.534631 | 1_1:-33241382 | Msa0019150:intron |
CATGGTAATACAAAGAAGAC+TGG | 0.535833 | 1_1:-33241799 | Msa0019150:intron |
ACTTAAAGCAAGCAGGATGA+AGG | 0.536557 | 1_1:-33243439 | Msa0019150:CDS |
TGCTCTGGATCTGATTGAGC+AGG | 0.537227 | 1_1:-33243568 | Msa0019150:intron |
ATGATGGCAGTTGCCCCTGC+TGG | 0.540223 | 1_1:-33241305 | Msa0019150:CDS |
TGACCTTGAGAAGCGTTTGG+CGG | 0.541826 | 1_1:-33240318 | Msa0019150:CDS |
GGTGTCGCAGGTCAATTAGT+TGG | 0.542651 | 1_1:-33241284 | Msa0019150:CDS |
ATGACATGCTTAGGCATGAA+CGG | 0.544393 | 1_1:-33242583 | Msa0019150:CDS |
AGTTATCAGCAGCTCCCAAA+GGG | 0.549435 | 1_1:-33240586 | Msa0019150:CDS |
ACTGAGTCTGTGTCTGATCA+TGG | 0.552055 | 1_1:-33241817 | Msa0019150:CDS |
CAATATGGTAATGAGGAACA+AGG | 0.555528 | 1_1:-33245803 | None:intergenic |
TGGTTGCCAAAACACATGCA+TGG | 0.558290 | 1_1:-33242670 | Msa0019150:CDS |
AATATATTAAATTTATGAGG+TGG | 0.559384 | 1_1:-33240152 | Msa0019150:three_prime_UTR |
ATACCTTCTTAGGTGCCTTG+TGG | 0.561603 | 1_1:+33244848 | None:intergenic |
GAGGAACAAGGGTGGTAATG+AGG | 0.563012 | 1_1:-33245791 | Msa0019150:CDS |
CTGGCTTGAGGACTATAATC+GGG | 0.565872 | 1_1:-33243184 | Msa0019150:intron |
TTAGCAGATCCTGTTACTAA+GGG | 0.565933 | 1_1:+33242177 | None:intergenic |
AGAATACTGAAAATGTCGGC+AGG | 0.567256 | 1_1:-33240550 | Msa0019150:intron |
ACAAACCACCTTATCAGTCA+AGG | 0.567759 | 1_1:-33243986 | Msa0019150:CDS |
GGTAAGAGCAGAAATGAACT+TGG | 0.570530 | 1_1:+33240053 | None:intergenic |
CAGCATGTGAAGAAGAGAGC+TGG | 0.571216 | 1_1:-33243203 | Msa0019150:CDS |
TAGGAGTGAAATTAGGCAAG+AGG | 0.574905 | 1_1:-33240017 | Msa0019150:three_prime_UTR |
GGTTGCCAAAACACATGCAT+GGG | 0.577613 | 1_1:-33242669 | Msa0019150:CDS |
TGAAGAAGAGAGCTGGCTTG+AGG | 0.585193 | 1_1:-33243196 | Msa0019150:CDS |
TCAAAGAATACTGAAAATGT+CGG | 0.585548 | 1_1:-33240554 | Msa0019150:CDS |
GAGCCGCCAAACGCTTCTCA+AGG | 0.592287 | 1_1:+33240315 | None:intergenic |
TATATGGTTCACGTTCTCAA+AGG | 0.592630 | 1_1:-33240264 | Msa0019150:three_prime_UTR |
TTTGAGTGCCTTAATGGACA+AGG | 0.597250 | 1_1:-33242208 | Msa0019150:CDS |
TTGACCAACTTAAAGCAAGC+AGG | 0.598791 | 1_1:-33243446 | Msa0019150:CDS |
TTGTCAGCCAGTAATTCAGT+TGG | 0.600517 | 1_1:+33243297 | None:intergenic |
GCAAGCCTTGACTGATAAGG+TGG | 0.603799 | 1_1:+33243981 | None:intergenic |
CAGTTATCAGCAGCTCCCAA+AGG | 0.607564 | 1_1:-33240587 | Msa0019150:CDS |
TTGAGTGCCTTAATGGACAA+GGG | 0.612296 | 1_1:-33242207 | Msa0019150:CDS |
ATCATGCACGACCATACTCT+AGG | 0.616389 | 1_1:-33244113 | Msa0019150:CDS |
TGCTGCAAGAGAGAAGATCA+TGG | 0.621986 | 1_1:-33243346 | Msa0019150:CDS |
TTGTAGTTGAGCCATAGTTG+TGG | 0.623128 | 1_1:-33240113 | Msa0019150:three_prime_UTR |
GTCATCGCTGAAGAAACTGC+AGG | 0.623544 | 1_1:+33241260 | None:intergenic |
GCAAGAGGAGAACGATAGTG+AGG | 0.641307 | 1_1:-33240002 | Msa0019150:three_prime_UTR |
ATTGACCTGCGACACCAGCA+GGG | 0.653280 | 1_1:+33241291 | None:intergenic |
AAGGGTGGTAATGAGGAACA+AGG | 0.660265 | 1_1:-33245784 | Msa0019150:CDS |
ATTTCTCAGCTCCAGCGCGG+TGG | 0.663610 | 1_1:+33241238 | None:intergenic |
TTGACCTGCGACACCAGCAG+GGG | 0.669385 | 1_1:+33241292 | None:intergenic |
AATATGGTAATGAGGAACAA+GGG | 0.670742 | 1_1:-33245802 | Msa0019150:CDS |
GATGGGAAAACTCATACACA+AGG | 0.698025 | 1_1:-33241365 | Msa0019150:CDS |
AGGGTGGTAATGAGGAACAA+GGG | 0.706519 | 1_1:-33245783 | Msa0019150:CDS |
AAAGCTTATTCCTACCTGTG+AGG | 0.707349 | 1_1:+33240685 | None:intergenic |
ATGGTAATGAGGAACAAGGG+TGG | 0.717730 | 1_1:-33245799 | Msa0019150:CDS |
GGTGCTTGATGAAATCGGTG+TGG | 0.719676 | 1_1:-33240714 | Msa0019150:CDS |
AGAATTTCTCAGCTCCAGCG+CGG | 0.750273 | 1_1:+33241235 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTGATGTAAAAAATAAAT+GGG | - | chr1_1:33240459-33240478 | Msa0019150:intron | 10.0% |
!! | TCTAATATCTAATATTAATA+AGG | + | chr1_1:33240913-33240932 | None:intergenic | 10.0% |
!! | TTAAATCAAAAATGATATAT+TGG | + | chr1_1:33242766-33242785 | None:intergenic | 10.0% |
!! | GAATTGATGTAAAAAATAAA+TGG | - | chr1_1:33240458-33240477 | Msa0019150:intron | 15.0% |
!! | AATATGATATATATCGTAAT+GGG | + | chr1_1:33240991-33241010 | None:intergenic | 15.0% |
!! | TGATAGAATAATTCTATTAT+GGG | - | chr1_1:33241094-33241113 | Msa0019150:intron | 15.0% |
!!! | AAATTGTTGTTTGAATATTA+TGG | - | chr1_1:33241325-33241344 | Msa0019150:CDS | 15.0% |
!!! | AATTGTTGTTTGAATATTAT+GGG | - | chr1_1:33241326-33241345 | Msa0019150:CDS | 15.0% |
!!! | TTATTTTGTTCTTTTTATGA+AGG | - | chr1_1:33242210-33242229 | Msa0019150:CDS | 15.0% |
!!! | TTAACAGATTTTCTTAAATA+TGG | - | chr1_1:33243622-33243641 | Msa0019150:intron | 15.0% |
!!! | AAACATATCTATCATATTTT+GGG | + | chr1_1:33244292-33244311 | None:intergenic | 15.0% |
!!! | AAAACATATCTATCATATTT+TGG | + | chr1_1:33244293-33244312 | None:intergenic | 15.0% |
!!! | TTTTTGTTTTTTAGAGAATA+GGG | + | chr1_1:33245196-33245215 | None:intergenic | 15.0% |
!! | TATATATCATCATTATTTCA+AGG | + | chr1_1:33245529-33245548 | None:intergenic | 15.0% |
!! | AATATATTAAATTTATGAGG+TGG | - | chr1_1:33245548-33245567 | Msa0019150:intron | 15.0% |
!!! | TTGATGTTGAATTATTTTCT+GGG | - | chr1_1:33240006-33240025 | Msa0019150:three_prime_UTR | 20.0% |
!!! | ATGTAAAAAATAAATGGGTT+GGG | - | chr1_1:33240464-33240483 | Msa0019150:intron | 20.0% |
!!! | CATAAGATTTTTATTGCATT+TGG | - | chr1_1:33240657-33240676 | Msa0019150:intron | 20.0% |
!!! | AAATGTTGTCTAAAATGAAT+AGG | + | chr1_1:33240770-33240789 | None:intergenic | 20.0% |
!! | CAATATGATATATATCGTAA+TGG | + | chr1_1:33240992-33241011 | None:intergenic | 20.0% |
!! | CTGATAGAATAATTCTATTA+TGG | - | chr1_1:33241093-33241112 | Msa0019150:intron | 20.0% |
!! | GTGGAAAATTTACTAAATAA+TGG | - | chr1_1:33241116-33241135 | Msa0019150:intron | 20.0% |
!!! | AACTGAATTTACAATCATTT+TGG | - | chr1_1:33241481-33241500 | Msa0019150:intron | 20.0% |
!!! | ATATTTTGAACTGAAGAAAA+TGG | - | chr1_1:33241644-33241663 | Msa0019150:intron | 20.0% |
!! | AACATTAAGCAATATGATAA+GGG | - | chr1_1:33241878-33241897 | Msa0019150:intron | 20.0% |
!!! | ATTTTTCATTATGCATTGTT+TGG | - | chr1_1:33241914-33241933 | Msa0019150:intron | 20.0% |
!!! | TTTTTCATTATGCATTGTTT+GGG | - | chr1_1:33241915-33241934 | Msa0019150:intron | 20.0% |
!! | ATATATGTTGAACTTTATGT+GGG | - | chr1_1:33242029-33242048 | Msa0019150:intron | 20.0% |
!! | AATTTGATCATTGCATTAAA+TGG | - | chr1_1:33242726-33242745 | Msa0019150:intron | 20.0% |
!! | ATTAATATAACAGTATCTGA+TGG | + | chr1_1:33242911-33242930 | None:intergenic | 20.0% |
!!! | AGAATTAACATTGTTTCTTT+TGG | - | chr1_1:33242981-33243000 | Msa0019150:intron | 20.0% |
!! | ATCGTGAAAAAACTAAAATT+AGG | + | chr1_1:33243285-33243304 | None:intergenic | 20.0% |
!! | ATTATTAATATAAATGCCTC+TGG | - | chr1_1:33243445-33243464 | Msa0019150:CDS | 20.0% |
!! | TTTAAAAAACATCACAACAT+TGG | + | chr1_1:33243571-33243590 | None:intergenic | 20.0% |
!!! | TTTAACTGTAGTTTGTTAAT+AGG | - | chr1_1:33243596-33243615 | Msa0019150:CDS | 20.0% |
!!! | TGTTTTCATTGTTTTGAAAT+AGG | - | chr1_1:33243822-33243841 | Msa0019150:intron | 20.0% |
!!! | AGTACATTTGATGTTTTATA+TGG | - | chr1_1:33244608-33244627 | Msa0019150:intron | 20.0% |
!! | TATGGTATAGTTAAATTCAT+TGG | - | chr1_1:33244626-33244645 | Msa0019150:intron | 20.0% |
!!! | GTATTTTATTTGTACTCTTT+TGG | - | chr1_1:33245090-33245109 | Msa0019150:intron | 20.0% |
!!! | CTTTTTGTTTTTTAGAGAAT+AGG | + | chr1_1:33245197-33245216 | None:intergenic | 20.0% |
!! | ACAAGTTAAAATTTCTTAAG+CGG | - | chr1_1:33245296-33245315 | Msa0019150:intron | 20.0% |
!! | GTAATAACATCAAAATTCTA+AGG | + | chr1_1:33245348-33245367 | None:intergenic | 20.0% |
!! | CTTGATGTTGAATTATTTTC+TGG | - | chr1_1:33240005-33240024 | Msa0019150:three_prime_UTR | 25.0% |
! | TGTTCATCACAACAAATATT+AGG | - | chr1_1:33240096-33240115 | Msa0019150:three_prime_UTR | 25.0% |
!!! | TTTTGTGATTTTGATTGTGT+AGG | - | chr1_1:33240214-33240233 | Msa0019150:three_prime_UTR | 25.0% |
! | ATTAGTGTAAGTGTAATCAT+GGG | - | chr1_1:33240263-33240282 | Msa0019150:three_prime_UTR | 25.0% |
! | GATGTAAAAAATAAATGGGT+TGG | - | chr1_1:33240463-33240482 | Msa0019150:intron | 25.0% |
! | ACAAAGGGATTATCTTAAAA+AGG | - | chr1_1:33240684-33240703 | Msa0019150:intron | 25.0% |
! | GTATAATGCATTAGGAATTT+AGG | + | chr1_1:33240882-33240901 | None:intergenic | 25.0% |
! | AACTACTTGTATAATGCATT+AGG | + | chr1_1:33240890-33240909 | None:intergenic | 25.0% |
! | CAAGTCATATGAAATGTATT+TGG | + | chr1_1:33240949-33240968 | None:intergenic | 25.0% |
! | ATTCTATCAGAATTACAACA+AGG | + | chr1_1:33241083-33241102 | None:intergenic | 25.0% |
! | TAGAATAATTCTATTATGGG+TGG | - | chr1_1:33241097-33241116 | Msa0019150:intron | 25.0% |
! | ATTGCTAATCCAATTTGTAA+TGG | + | chr1_1:33241160-33241179 | None:intergenic | 25.0% |
!! | TATTTATTGTTGTTGCAACT+TGG | - | chr1_1:33241205-33241224 | Msa0019150:intron | 25.0% |
! | TAAAGTTTCATAATCTCTGT+TGG | - | chr1_1:33241230-33241249 | Msa0019150:CDS | 25.0% |
!! | GTGATAGAATTAAATGCTTT+TGG | - | chr1_1:33241272-33241291 | Msa0019150:CDS | 25.0% |
! | AATATATAGCCAATGTAAGA+TGG | + | chr1_1:33241629-33241648 | None:intergenic | 25.0% |
!! | TTTCCTTTTGTGTTCTTTTT+TGG | - | chr1_1:33241765-33241784 | Msa0019150:intron | 25.0% |
! | AATCCAAAAAAGAACACAAA+AGG | + | chr1_1:33241771-33241790 | None:intergenic | 25.0% |
!!! | TTTGTGTTCTTTTTTGGATT+TGG | - | chr1_1:33241771-33241790 | Msa0019150:intron | 25.0% |
! | CAACATTAAGCAATATGATA+AGG | - | chr1_1:33241877-33241896 | Msa0019150:intron | 25.0% |
! | ACATTAAGCAATATGATAAG+GGG | - | chr1_1:33241879-33241898 | Msa0019150:intron | 25.0% |
!! | TTTTCTTGAAGCAAAAAACT+GGG | + | chr1_1:33241949-33241968 | None:intergenic | 25.0% |
!! | ATTTTCTTGAAGCAAAAAAC+TGG | + | chr1_1:33241950-33241969 | None:intergenic | 25.0% |
!!! | TTTTTTGCTTCAAGAAAATG+CGG | - | chr1_1:33241951-33241970 | Msa0019150:intron | 25.0% |
! | CATATATGTTGAACTTTATG+TGG | - | chr1_1:33242028-33242047 | Msa0019150:intron | 25.0% |
!!! | CTTCTGAAGTTTAAAAGTTT+GGG | - | chr1_1:33242165-33242184 | Msa0019150:CDS | 25.0% |
! | TGCTCATATAGAAATAGATT+CGG | - | chr1_1:33242330-33242349 | Msa0019150:intron | 25.0% |
! | TTTAGGCCAAAAAGATATAT+TGG | - | chr1_1:33242453-33242472 | Msa0019150:intron | 25.0% |
!! | ACTTGTCCAATATATCTTTT+TGG | + | chr1_1:33242462-33242481 | None:intergenic | 25.0% |
! | TGATTTCATTCCATAAATAC+CGG | + | chr1_1:33242882-33242901 | None:intergenic | 25.0% |
!!! | TTATATTTGCTGTTGATATC+AGG | - | chr1_1:33242930-33242949 | Msa0019150:intron | 25.0% |
! | ACAAAAAGATGCTACATTAT+TGG | - | chr1_1:33242957-33242976 | Msa0019150:intron | 25.0% |
! | CAGAAGCTACAAAAAATTTA+GGG | + | chr1_1:33243175-33243194 | None:intergenic | 25.0% |
! | ACAGAAGCTACAAAAAATTT+AGG | + | chr1_1:33243176-33243195 | None:intergenic | 25.0% |
! | AAAATGCATAAATCGAAACT+GGG | + | chr1_1:33243248-33243267 | None:intergenic | 25.0% |
! | AAAAATGCATAAATCGAAAC+TGG | + | chr1_1:33243249-33243268 | None:intergenic | 25.0% |
! | CAAATTGACATAAAACAATG+AGG | + | chr1_1:33243395-33243414 | None:intergenic | 25.0% |
!!! | CTCATTGTTTTATGTCAATT+TGG | - | chr1_1:33243393-33243412 | Msa0019150:CDS | 25.0% |
! | TGTCTTGAATATCATTATTC+AGG | - | chr1_1:33243655-33243674 | Msa0019150:intron | 25.0% |
! | GACACAATAAAGTAACATTT+AGG | + | chr1_1:33243767-33243786 | None:intergenic | 25.0% |
! | TTCAAAACAATGAAAACACT+TGG | + | chr1_1:33243820-33243839 | None:intergenic | 25.0% |
!!! | ATTTGTTTTAGTATGAACAC+TGG | + | chr1_1:33244492-33244511 | None:intergenic | 25.0% |
! | ACTCGTGTTAAAGATAATAT+AGG | + | chr1_1:33244682-33244701 | None:intergenic | 25.0% |
! | ATATTATCTTTAACACGAGT+TGG | - | chr1_1:33244682-33244701 | Msa0019150:intron | 25.0% |
! | TATTATCTTTAACACGAGTT+GGG | - | chr1_1:33244683-33244702 | Msa0019150:intron | 25.0% |
! | TAATTTCAGAAGTAGTTTCA+GGG | + | chr1_1:33244779-33244798 | None:intergenic | 25.0% |
! | TACAATGTCATGATTTCTTA+TGG | - | chr1_1:33244813-33244832 | Msa0019150:intron | 25.0% |
! | TTTATTCACAAAGAGTAAGA+TGG | - | chr1_1:33244872-33244891 | Msa0019150:CDS | 25.0% |
! | TTATTCACAAAGAGTAAGAT+GGG | - | chr1_1:33244873-33244892 | Msa0019150:CDS | 25.0% |
!! | AATTACACTTACCTTTTTCT+TGG | - | chr1_1:33244961-33244980 | Msa0019150:intron | 25.0% |
! | TCAAAGAATACTGAAAATGT+CGG | - | chr1_1:33245146-33245165 | Msa0019150:intron | 25.0% |
! | CAAAAAGAAAGTTAAGAGAA+AGG | - | chr1_1:33245210-33245229 | Msa0019150:intron | 25.0% |
!!! | ATTTTGATGTTATTACAGCT+CGG | - | chr1_1:33245352-33245371 | Msa0019150:intron | 25.0% |
!! | TCTAAGAAACCCATAAATTT+TGG | - | chr1_1:33245406-33245425 | Msa0019150:intron | 25.0% |
! | TAACTACAGCCAAAATTTAT+GGG | + | chr1_1:33245418-33245437 | None:intergenic | 25.0% |
! | ATAACTACAGCCAAAATTTA+TGG | + | chr1_1:33245419-33245438 | None:intergenic | 25.0% |
!!! | AAATTTTGGCTGTAGTTATA+TGG | - | chr1_1:33245420-33245439 | Msa0019150:intron | 25.0% |
! | ACATATATATTCCACAACTA+TGG | + | chr1_1:33245601-33245620 | None:intergenic | 25.0% |
!! | AATCTAAAGTCATGCTTTTC+AGG | - | chr1_1:33239955-33239974 | Msa0019150:three_prime_UTR | 30.0% |
ACTTGCATGTGATTTATGTT+TGG | - | chr1_1:33240046-33240065 | Msa0019150:three_prime_UTR | 30.0% | |
CTTGCATGTGATTTATGTTT+GGG | - | chr1_1:33240047-33240066 | Msa0019150:three_prime_UTR | 30.0% | |
TTGCATGTGATTTATGTTTG+GGG | - | chr1_1:33240048-33240067 | Msa0019150:three_prime_UTR | 30.0% | |
CATTAGTGTAAGTGTAATCA+TGG | - | chr1_1:33240262-33240281 | Msa0019150:three_prime_UTR | 30.0% | |
TGATAAATTGCCTAATCAGT+TGG | - | chr1_1:33240597-33240616 | Msa0019150:intron | 30.0% | |
GATAAATTGCCTAATCAGTT+GGG | - | chr1_1:33240598-33240617 | Msa0019150:intron | 30.0% | |
AAACTTATTCCCAACTGATT+AGG | + | chr1_1:33240610-33240629 | None:intergenic | 30.0% | |
!!! | GGAATAAGTTTTAGAGTCAA+GGG | - | chr1_1:33240619-33240638 | Msa0019150:intron | 30.0% |
!!! | GAATAAGTTTTAGAGTCAAG+GGG | - | chr1_1:33240620-33240639 | Msa0019150:intron | 30.0% |
! | TTTAGGATTCATACCTTCTT+AGG | + | chr1_1:33240865-33240884 | None:intergenic | 30.0% |
TCATATGAAATGTATTTGGC+AGG | + | chr1_1:33240945-33240964 | None:intergenic | 30.0% | |
ATCTGTTTACAAAATGCAGT+AGG | + | chr1_1:33241045-33241064 | None:intergenic | 30.0% | |
TAGAGTTCTCCATTACAAAT+TGG | - | chr1_1:33241148-33241167 | Msa0019150:intron | 30.0% | |
TCAAACAACAATTTGCATCA+GGG | + | chr1_1:33241319-33241338 | None:intergenic | 30.0% | |
TTCAAACAACAATTTGCATC+AGG | + | chr1_1:33241320-33241339 | None:intergenic | 30.0% | |
! | TGTTGTTTGAATATTATGGG+AGG | - | chr1_1:33241329-33241348 | Msa0019150:CDS | 30.0% |
! | AGATATTGCTTAGCTTTCAA+AGG | - | chr1_1:33241398-33241417 | Msa0019150:intron | 30.0% |
CTTGTCTTCACTACAAAAAA+AGG | + | chr1_1:33241545-33241564 | None:intergenic | 30.0% | |
!!! | CTTTTTTTGTAGTGAAGACA+AGG | - | chr1_1:33241543-33241562 | Msa0019150:intron | 30.0% |
TGATTGTGCTAGAATAAACA+TGG | - | chr1_1:33241811-33241830 | Msa0019150:CDS | 30.0% | |
GATTGTGCTAGAATAAACAT+GGG | - | chr1_1:33241812-33241831 | Msa0019150:CDS | 30.0% | |
CATTAAGCAATATGATAAGG+GGG | - | chr1_1:33241880-33241899 | Msa0019150:intron | 30.0% | |
! | CCAAACTTTTAAACTTCAGA+AGG | + | chr1_1:33242167-33242186 | None:intergenic | 30.0% |
!! | CCTTCTGAAGTTTAAAAGTT+TGG | - | chr1_1:33242164-33242183 | Msa0019150:CDS | 30.0% |
TATTGGACAAGTTTGAGAAA+TGG | - | chr1_1:33242470-33242489 | Msa0019150:intron | 30.0% | |
CACAAAGAAAAAATGCACAA+GGG | + | chr1_1:33242554-33242573 | None:intergenic | 30.0% | |
ACACAAAGAAAAAATGCACA+AGG | + | chr1_1:33242555-33242574 | None:intergenic | 30.0% | |
! | TTTTTCTTTGTGTCCAGTTT+TGG | - | chr1_1:33242562-33242581 | Msa0019150:CDS | 30.0% |
! | AAAGCTAAACTTGGTAATTC+CGG | + | chr1_1:33242701-33242720 | None:intergenic | 30.0% |
AATTGCAGTAAAGCTAAACT+TGG | + | chr1_1:33242710-33242729 | None:intergenic | 30.0% | |
AACATGTATAATGCAAGCAT+AGG | - | chr1_1:33242823-33242842 | Msa0019150:intron | 30.0% | |
GATTTCATTCCATAAATACC+GGG | + | chr1_1:33242881-33242900 | None:intergenic | 30.0% | |
AATATAACAGTATCTGATGG+TGG | + | chr1_1:33242908-33242927 | None:intergenic | 30.0% | |
CATGTCATATTCATCTAACA+TGG | + | chr1_1:33243105-33243124 | None:intergenic | 30.0% | |
TAGATGAATATGACATGCTT+AGG | - | chr1_1:33243108-33243127 | Msa0019150:intron | 30.0% | |
ATTTAAGAAAACGTGAGATG+CGG | - | chr1_1:33243332-33243351 | Msa0019150:CDS | 30.0% | |
! | AACTCACATTTGCATTTTTG+CGG | + | chr1_1:33243371-33243390 | None:intergenic | 30.0% |
! | TTCCTTTTAATAAGATCCAG+AGG | + | chr1_1:33243464-33243483 | None:intergenic | 30.0% |
!!! | ATCTGCTAATGTTTTTTCAG+AGG | - | chr1_1:33243537-33243556 | Msa0019150:intron | 30.0% |
AACACTTGGAGTCAATTTAA+TGG | + | chr1_1:33243806-33243825 | None:intergenic | 30.0% | |
ATGAACAATAGAGTTGTCAT+GGG | - | chr1_1:33244025-33244044 | Msa0019150:intron | 30.0% | |
TATATCATTGTTGCTCAGTA+AGG | - | chr1_1:33244123-33244142 | Msa0019150:CDS | 30.0% | |
ATATCATTGTTGCTCAGTAA+GGG | - | chr1_1:33244124-33244143 | Msa0019150:CDS | 30.0% | |
ATCAGAAACTGCAATTTCTT+TGG | + | chr1_1:33244372-33244391 | None:intergenic | 30.0% | |
GTAATTTCAGAAGTAGTTTC+AGG | + | chr1_1:33244780-33244799 | None:intergenic | 30.0% | |
AGACTTACTTACAAGGTTTA+AGG | - | chr1_1:33244841-33244860 | Msa0019150:intron | 30.0% | |
TACTTACAAGGTTTAAGGAA+TGG | - | chr1_1:33244846-33244865 | Msa0019150:intron | 30.0% | |
TTCAAGGTCTTACATTAAGA+TGG | - | chr1_1:33244902-33244921 | Msa0019150:intron | 30.0% | |
! | TTTTGATGTTATTACAGCTC+GGG | - | chr1_1:33245353-33245372 | Msa0019150:intron | 30.0% |
TTGATTGTGTAGGTATGAAG+AGG | - | chr1_1:33240224-33240243 | Msa0019150:three_prime_UTR | 35.0% | |
TGATTGTGTAGGTATGAAGA+GGG | - | chr1_1:33240225-33240244 | Msa0019150:three_prime_UTR | 35.0% | |
ATGGAAAGAAGAAGGAAGAA+AGG | - | chr1_1:33240316-33240335 | Msa0019150:CDS | 35.0% | |
!! | AAAAATAAATGGGTTGGGAG+TGG | - | chr1_1:33240469-33240488 | Msa0019150:intron | 35.0% |
!!! | GGGAATAAGTTTTAGAGTCA+AGG | - | chr1_1:33240618-33240637 | Msa0019150:intron | 35.0% |
!! | TATTGCATTTGGTGCAACAA+AGG | - | chr1_1:33240668-33240687 | Msa0019150:intron | 35.0% |
!! | ATTGCATTTGGTGCAACAAA+GGG | - | chr1_1:33240669-33240688 | Msa0019150:intron | 35.0% |
! | GCAAGCTAATTTTATCCACA+AGG | - | chr1_1:33240837-33240856 | Msa0019150:intron | 35.0% |
GCAGTAGGAAAAGAAAGTAA+TGG | + | chr1_1:33241030-33241049 | None:intergenic | 35.0% | |
GTTTGAATATTATGGGAGGA+TGG | - | chr1_1:33241333-33241352 | Msa0019150:CDS | 35.0% | |
GCAGAGATAAGAAAGTAGTA+AGG | + | chr1_1:33241369-33241388 | None:intergenic | 35.0% | |
! | TATTGCTTAGCTTTCAAAGG+TGG | - | chr1_1:33241401-33241420 | Msa0019150:intron | 35.0% |
CTTTCAAAGGTGGATGTTAA+GGG | - | chr1_1:33241411-33241430 | Msa0019150:intron | 35.0% | |
!!! | ACAGTATGATTGGTTGGTTT+TGG | + | chr1_1:33241439-33241458 | None:intergenic | 35.0% |
AAAACCAACCAATCATACTG+TGG | - | chr1_1:33241438-33241457 | Msa0019150:intron | 35.0% | |
TGAATTTGCCACAGTATGAT+TGG | + | chr1_1:33241449-33241468 | None:intergenic | 35.0% | |
!! | TTTTGGATTTGGCTTCTTAG+CGG | - | chr1_1:33241782-33241801 | Msa0019150:intron | 35.0% |
TATGCAGGTTATGTAGTAGA+AGG | - | chr1_1:33241843-33241862 | Msa0019150:CDS | 35.0% | |
CTGAAATGTTACAGGTAACA+TGG | + | chr1_1:33242078-33242097 | None:intergenic | 35.0% | |
! | TCTTTTTATGAAGGCTGAAG+TGG | - | chr1_1:33242219-33242238 | Msa0019150:CDS | 35.0% |
CATTGAACCAACTGAATTAC+TGG | - | chr1_1:33242396-33242415 | Msa0019150:intron | 35.0% | |
AAAGCCAAAGAAGAAGCTTT+AGG | - | chr1_1:33242436-33242455 | Msa0019150:intron | 35.0% | |
ATAGTGCCTTACCATATTTC+CGG | - | chr1_1:33242679-33242698 | Msa0019150:CDS | 35.0% | |
GTAATTCCGGAAATATGGTA+AGG | + | chr1_1:33242688-33242707 | None:intergenic | 35.0% | |
! | ACTTGGTAATTCCGGAAATA+TGG | + | chr1_1:33242693-33242712 | None:intergenic | 35.0% |
!! | TTTTGGTGTAAATGCAGCTT+TGG | - | chr1_1:33242998-33243017 | Msa0019150:intron | 35.0% |
GATACGTCATTCACATATGA+TGG | - | chr1_1:33243065-33243084 | Msa0019150:intron | 35.0% | |
TCATCTAACATGGCAAGAAT+AGG | + | chr1_1:33243095-33243114 | None:intergenic | 35.0% | |
! | AAAAACGAAGAAAGAGCGTA+AGG | - | chr1_1:33243147-33243166 | Msa0019150:intron | 35.0% |
! | GCTTCTGTGAAATCTTTTCA+AGG | - | chr1_1:33243188-33243207 | Msa0019150:CDS | 35.0% |
TGCCTCTGGATCTTATTAAA+AGG | - | chr1_1:33243459-33243478 | Msa0019150:CDS | 35.0% | |
! | TTGTTTTCCCTTGTCCATTA+AGG | + | chr1_1:33243503-33243522 | None:intergenic | 35.0% |
TTAGCAGATCCTGTTACTAA+GGG | + | chr1_1:33243526-33243545 | None:intergenic | 35.0% | |
ATTAGCAGATCCTGTTACTA+AGG | + | chr1_1:33243527-33243546 | None:intergenic | 35.0% | |
CTTATCAGAACCTGTTGATA+AGG | - | chr1_1:33243688-33243707 | Msa0019150:intron | 35.0% | |
! | TTAACTGTTGCAGAGAGTTT+TGG | - | chr1_1:33243719-33243738 | Msa0019150:intron | 35.0% |
! | TAACTGTTGCAGAGAGTTTT+GGG | - | chr1_1:33243720-33243739 | Msa0019150:intron | 35.0% |
CATGGTAATACAAAGAAGAC+TGG | - | chr1_1:33243901-33243920 | Msa0019150:intron | 35.0% | |
TCAGGCTAATCAAACAAAGA+AGG | - | chr1_1:33243936-33243955 | Msa0019150:intron | 35.0% | |
GATGAACAATAGAGTTGTCA+TGG | - | chr1_1:33244024-33244043 | Msa0019150:intron | 35.0% | |
TGTCAACCACTTTATTGAGT+AGG | - | chr1_1:33244078-33244097 | Msa0019150:intron | 35.0% | |
GTCAACCACTTTATTGAGTA+GGG | - | chr1_1:33244079-33244098 | Msa0019150:intron | 35.0% | |
TATCATTGTTGCTCAGTAAG+GGG | - | chr1_1:33244125-33244144 | Msa0019150:CDS | 35.0% | |
AAATCGATACGGTATGAAGT+CGG | + | chr1_1:33244230-33244249 | None:intergenic | 35.0% | |
!!! | ACTTCATACCGTATCGATTT+TGG | - | chr1_1:33244230-33244249 | Msa0019150:intron | 35.0% |
ATAAGACGCCAAAATCGATA+CGG | + | chr1_1:33244241-33244260 | None:intergenic | 35.0% | |
TTCTCTACTGTTTAAGCAGA+TGG | - | chr1_1:33244311-33244330 | Msa0019150:intron | 35.0% | |
TGCAGTTTCTGATAAGATGA+TGG | - | chr1_1:33244379-33244398 | Msa0019150:intron | 35.0% | |
AGTTGTATTATCTTAGCGTG+TGG | - | chr1_1:33244730-33244749 | Msa0019150:intron | 35.0% | |
TTTCAGGGAAAGAAACATGA+TGG | + | chr1_1:33244764-33244783 | None:intergenic | 35.0% | |
ATATCATCTGACAGTGCTTT+CGG | - | chr1_1:33245055-33245074 | Msa0019150:intron | 35.0% | |
AGAATAGGGAAAGAGTTACA+CGG | + | chr1_1:33245182-33245201 | None:intergenic | 35.0% | |
TATATGGTTCACGTTCTCAA+AGG | - | chr1_1:33245436-33245455 | Msa0019150:intron | 35.0% | |
TGCTCTTACCTATTGATGTT+TGG | - | chr1_1:33245660-33245679 | Msa0019150:intron | 35.0% | |
CTTACCTATTGATGTTTGGT+AGG | - | chr1_1:33245664-33245683 | Msa0019150:intron | 35.0% | |
TGTTTGGTAGGAGTGAAATT+AGG | - | chr1_1:33245676-33245695 | Msa0019150:intron | 35.0% | |
CAAGAGAAGATTGATGCAGA+TGG | - | chr1_1:33240297-33240316 | Msa0019150:exon | 40.0% | |
TGATGCAGATGGAAAGAAGA+AGG | - | chr1_1:33240308-33240327 | Msa0019150:CDS | 40.0% | |
AGGAATGCATTGTTCAAAGC+TGG | - | chr1_1:33240336-33240355 | Msa0019150:intron | 40.0% | |
GAGACATTACCTCAAACACT+TGG | + | chr1_1:33240501-33240520 | None:intergenic | 40.0% | |
TGCTTAAAGAGATCACAGAC+AGG | - | chr1_1:33240713-33240732 | Msa0019150:CDS | 40.0% | |
ATCACTTCTAACCACTCCTT+CGG | + | chr1_1:33241257-33241276 | None:intergenic | 40.0% | |
GCTTTCAAAGGTGGATGTTA+AGG | - | chr1_1:33241410-33241429 | Msa0019150:intron | 40.0% | |
TTTGCCACAGTATGATTGGT+TGG | + | chr1_1:33241445-33241464 | None:intergenic | 40.0% | |
AGACCATATAGCCTAGAGTA+TGG | + | chr1_1:33241601-33241620 | None:intergenic | 40.0% | |
GTCTGATCTCCATCTTACAT+TGG | - | chr1_1:33241617-33241636 | Msa0019150:intron | 40.0% | |
ATGGTTGTGTATTAACCTGC+TGG | - | chr1_1:33241663-33241682 | Msa0019150:intron | 40.0% | |
!!! | GGACAGGTCTTTGTTTTACA+AGG | - | chr1_1:33241688-33241707 | Msa0019150:intron | 40.0% |
ACAAACCACCTTATCAGTCA+AGG | - | chr1_1:33241714-33241733 | Msa0019150:intron | 40.0% | |
!! | TGCTGCATTTAGAGGTATCA+AGG | - | chr1_1:33241739-33241758 | Msa0019150:intron | 40.0% |
! | ACATGGGTTATGACTTATGC+AGG | - | chr1_1:33241828-33241847 | Msa0019150:CDS | 40.0% |
!! | GCGGTTGTAGTTTGATTTGA+AGG | - | chr1_1:33241970-33241989 | Msa0019150:intron | 40.0% |
GACAGAAGCTGAAATGTTAC+AGG | + | chr1_1:33242086-33242105 | None:intergenic | 40.0% | |
GTCAATGAAGTCACTATTCC+TGG | - | chr1_1:33242103-33242122 | Msa0019150:intron | 40.0% | |
TTGACCAACTTAAAGCAAGC+AGG | - | chr1_1:33242254-33242273 | Msa0019150:intron | 40.0% | |
! | TCATCCTGCTTGCTTTAAGT+TGG | + | chr1_1:33242261-33242280 | None:intergenic | 40.0% |
ACTTAAAGCAAGCAGGATGA+AGG | - | chr1_1:33242261-33242280 | Msa0019150:intron | 40.0% | |
TTGTCAGCCAGTAATTCAGT+TGG | + | chr1_1:33242406-33242425 | None:intergenic | 40.0% | |
TTGGCCTAAAGCTTCTTCTT+TGG | + | chr1_1:33242443-33242462 | None:intergenic | 40.0% | |
CAGAGAATTCCCGGTATTTA+TGG | - | chr1_1:33242869-33242888 | Msa0019150:intron | 40.0% | |
! | TGCAGCTTTGGTTGATACAT+TGG | - | chr1_1:33243010-33243029 | Msa0019150:intron | 40.0% |
ATGACATGCTTAGGCATGAA+CGG | - | chr1_1:33243117-33243136 | Msa0019150:intron | 40.0% | |
TGCTTCTTTGAGTGCCTTAA+TGG | - | chr1_1:33243486-33243505 | Msa0019150:intron | 40.0% | |
! | TTTGAGTGCCTTAATGGACA+AGG | - | chr1_1:33243492-33243511 | Msa0019150:intron | 40.0% |
! | TTGAGTGCCTTAATGGACAA+GGG | - | chr1_1:33243493-33243512 | Msa0019150:intron | 40.0% |
GGAAAACAACCCTTAGTAAC+AGG | - | chr1_1:33243514-33243533 | Msa0019150:intron | 40.0% | |
! | GAACCTGTTGATAAGGCAAA+AGG | - | chr1_1:33243695-33243714 | Msa0019150:intron | 40.0% |
! | AAGCCTTTTGCCTTATCAAC+AGG | + | chr1_1:33243701-33243720 | None:intergenic | 40.0% |
!!! | AGAGAGTTTTGGGATTTCAC+AGG | - | chr1_1:33243730-33243749 | Msa0019150:intron | 40.0% |
AAGAAGGAAAAGAAGCTGTG+AGG | - | chr1_1:33243952-33243971 | Msa0019150:intron | 40.0% | |
AGAAGGAAAAGAAGCTGTGA+GGG | - | chr1_1:33243953-33243972 | Msa0019150:intron | 40.0% | |
GTTCATCAAGATGTGACACT+TGG | + | chr1_1:33244011-33244030 | None:intergenic | 40.0% | |
CAAGACCCTACTCAATAAAG+TGG | + | chr1_1:33244087-33244106 | None:intergenic | 40.0% | |
! | ACGTTGTAGACTCTAAAGAG+TGG | - | chr1_1:33244188-33244207 | Msa0019150:intron | 40.0% |
CGGTATGAAGTCGGAAATAT+GGG | + | chr1_1:33244221-33244240 | None:intergenic | 40.0% | |
ACGGTATGAAGTCGGAAATA+TGG | + | chr1_1:33244222-33244241 | None:intergenic | 40.0% | |
ACTGTTTAAGCAGATGGAGA+TGG | - | chr1_1:33244317-33244336 | Msa0019150:intron | 40.0% | |
CTGTTTAAGCAGATGGAGAT+GGG | - | chr1_1:33244318-33244337 | Msa0019150:intron | 40.0% | |
GATGGGAAAACTCATACACA+AGG | - | chr1_1:33244335-33244354 | Msa0019150:intron | 40.0% | |
!! | GGCTTTGAGACTTACTTACA+AGG | - | chr1_1:33244834-33244853 | Msa0019150:intron | 40.0% |
! | ACACTTACCTTTTTCTTGGC+AGG | - | chr1_1:33244965-33244984 | Msa0019150:intron | 40.0% |
AAAGCTTATTCCTACCTGTG+AGG | + | chr1_1:33245018-33245037 | None:intergenic | 40.0% | |
TTTGATGCGATTCTCCCTTT+GGG | + | chr1_1:33245131-33245150 | None:intergenic | 40.0% | |
AGAATACTGAAAATGTCGGC+AGG | - | chr1_1:33245150-33245169 | Msa0019150:intron | 40.0% | |
TTGTAGTTGAGCCATAGTTG+TGG | - | chr1_1:33245587-33245606 | Msa0019150:intron | 40.0% | |
GGTAAGAGCAGAAATGAACT+TGG | + | chr1_1:33245650-33245669 | None:intergenic | 40.0% | |
CACTCCTACCAAACATCAAT+AGG | + | chr1_1:33245671-33245690 | None:intergenic | 40.0% | |
TAGGAGTGAAATTAGGCAAG+AGG | - | chr1_1:33245683-33245702 | Msa0019150:intron | 40.0% | |
! | ATGGTAATGAGGAACAAGGG+TGG | - | chr1_1:33239901-33239920 | Msa0019150:three_prime_UTR | 45.0% |
! | AAGGGTGGTAATGAGGAACA+AGG | - | chr1_1:33239916-33239935 | Msa0019150:three_prime_UTR | 45.0% |
! | AGGGTGGTAATGAGGAACAA+GGG | - | chr1_1:33239917-33239936 | Msa0019150:three_prime_UTR | 45.0% |
!!! | GTTTTAGAGTCAAGGGGATG+AGG | - | chr1_1:33240626-33240645 | Msa0019150:intron | 45.0% |
TACCACATCTTTCCTGTGAC+AGG | - | chr1_1:33240798-33240817 | Msa0019150:intron | 45.0% | |
AACCTGTCACAGGAAAGATG+TGG | + | chr1_1:33240803-33240822 | None:intergenic | 45.0% | |
ACATCTTTCCTGTGACAGGT+TGG | - | chr1_1:33240802-33240821 | Msa0019150:intron | 45.0% | |
! | TATCCACAAGGCACCTAAGA+AGG | - | chr1_1:33240849-33240868 | Msa0019150:intron | 45.0% |
ATACCTTCTTAGGTGCCTTG+TGG | + | chr1_1:33240855-33240874 | None:intergenic | 45.0% | |
CATAATCTCTGTTGGTCCGA+AGG | - | chr1_1:33241238-33241257 | Msa0019150:CDS | 45.0% | |
GGTTTCCTTCACCTGTTGTT+AGG | - | chr1_1:33241502-33241521 | Msa0019150:intron | 45.0% | |
GCAAACCTAACAACAGGTGA+AGG | + | chr1_1:33241510-33241529 | None:intergenic | 45.0% | |
GCACAAGCAAACCTAACAAC+AGG | + | chr1_1:33241516-33241535 | None:intergenic | 45.0% | |
ATCATGCACGACCATACTCT+AGG | - | chr1_1:33241587-33241606 | Msa0019150:intron | 45.0% | |
CGACCATACTCTAGGCTATA+TGG | - | chr1_1:33241595-33241614 | Msa0019150:intron | 45.0% | |
TTGTGTATTAACCTGCTGGC+AGG | - | chr1_1:33241667-33241686 | Msa0019150:intron | 45.0% | |
!! | TCAAGGCTTGCTGCATTTAG+AGG | - | chr1_1:33241731-33241750 | Msa0019150:intron | 45.0% |
TGCTGCAAGAGAGAAGATCA+TGG | - | chr1_1:33242354-33242373 | Msa0019150:intron | 45.0% | |
!! | GCTGGCTTGAGGACTATAAT+CGG | - | chr1_1:33242515-33242534 | Msa0019150:intron | 45.0% |
! | CTGGCTTGAGGACTATAATC+GGG | - | chr1_1:33242516-33242535 | Msa0019150:intron | 45.0% |
TCAAACGAGCAGAGAATTCC+CGG | - | chr1_1:33242860-33242879 | Msa0019150:intron | 45.0% | |
TGGTTGCCAAAACACATGCA+TGG | - | chr1_1:33243030-33243049 | Msa0019150:intron | 45.0% | |
GGTTGCCAAAACACATGCAT+GGG | - | chr1_1:33243031-33243050 | Msa0019150:intron | 45.0% | |
! | CTCTTCCCATGCATGTGTTT+TGG | + | chr1_1:33243039-33243058 | None:intergenic | 45.0% |
TGACATGCTTAGGCATGAAC+GGG | - | chr1_1:33243118-33243137 | Msa0019150:intron | 45.0% | |
TAAGAAAACGTGAGATGCGG+AGG | - | chr1_1:33243335-33243354 | Msa0019150:CDS | 45.0% | |
ACTGAGTCTGTGTCTGATCA+TGG | - | chr1_1:33243883-33243902 | Msa0019150:intron | 45.0% | |
AACAGAGTCATACCAGTGGT+TGG | + | chr1_1:33243983-33244002 | None:intergenic | 45.0% | |
GAAGAACAGAGTCATACCAG+TGG | + | chr1_1:33243987-33244006 | None:intergenic | 45.0% | |
! | CAGTAAGGGGTATATTGCTC+AGG | - | chr1_1:33244138-33244157 | Msa0019150:CDS | 45.0% |
GCAATACAGCAGAAGGTTGA+GGG | + | chr1_1:33244525-33244544 | None:intergenic | 45.0% | |
TCTAGAGGCAATACAGCAGA+AGG | + | chr1_1:33244532-33244551 | None:intergenic | 45.0% | |
! | CTGTATTGCCTCTAGAAGCT+TGG | - | chr1_1:33244536-33244555 | Msa0019150:intron | 45.0% |
TAGAAGCTTGGCTACAGGTA+CGG | - | chr1_1:33244548-33244567 | Msa0019150:intron | 45.0% | |
! | TCTTTAACACGAGTTGGGAC+TGG | - | chr1_1:33244688-33244707 | Msa0019150:intron | 45.0% |
TCAAGCACCTGCCAAGAAAA+AGG | + | chr1_1:33244975-33244994 | None:intergenic | 45.0% | |
TGGCAGGTGCTTGATGAAAT+CGG | - | chr1_1:33244981-33245000 | Msa0019150:intron | 45.0% | |
AGTTATCAGCAGCTCCCAAA+GGG | - | chr1_1:33245114-33245133 | Msa0019150:intron | 45.0% | |
CTTTGATGCGATTCTCCCTT+TGG | + | chr1_1:33245132-33245151 | None:intergenic | 45.0% | |
!! | TGATGACCTTGAGAAGCGTT+TGG | - | chr1_1:33245379-33245398 | Msa0019150:intron | 45.0% |
!! | AATATTTAAAAAGAATAATT+AGG | + | chr1_1:33243222-33243241 | None:intergenic | 5.0% |
!! | TATAATATATTAAATTTATG+AGG | - | chr1_1:33245545-33245564 | Msa0019150:intron | 5.0% |
! | GAGGAACAAGGGTGGTAATG+AGG | - | chr1_1:33239909-33239928 | Msa0019150:three_prime_UTR | 50.0% |
TTAGAGTCAAGGGGATGAGG+AGG | - | chr1_1:33240629-33240648 | Msa0019150:intron | 50.0% | |
TCACATCACCAACCTGTCAC+AGG | + | chr1_1:33240813-33240832 | None:intergenic | 50.0% | |
TATTAACCTGCTGGCAGGAC+AGG | - | chr1_1:33241672-33241691 | Msa0019150:intron | 50.0% | |
GCAAGCCTTGACTGATAAGG+TGG | + | chr1_1:33241722-33241741 | None:intergenic | 50.0% | |
GCAGCAAGCCTTGACTGATA+AGG | + | chr1_1:33241725-33241744 | None:intergenic | 50.0% | |
TATTCCTGGTGCACTTGCTC+TGG | - | chr1_1:33242117-33242136 | Msa0019150:intron | 50.0% | |
! | TGCTCTGGATCTGATTGAGC+AGG | - | chr1_1:33242132-33242151 | Msa0019150:intron | 50.0% |
CAGCATGTGAAGAAGAGAGC+TGG | - | chr1_1:33242497-33242516 | Msa0019150:intron | 50.0% | |
!! | TGAAGAAGAGAGCTGGCTTG+AGG | - | chr1_1:33242504-33242523 | Msa0019150:intron | 50.0% |
!! | GTGTCCAGTTTTGGTGAGAG+AGG | - | chr1_1:33242571-33242590 | Msa0019150:CDS | 50.0% |
CTCACCTCTCTCACCAAAAC+TGG | + | chr1_1:33242578-33242597 | None:intergenic | 50.0% | |
GGGAATTCTCTGCTCGTTTG+AGG | + | chr1_1:33242861-33242880 | None:intergenic | 50.0% | |
!! | GACTGGTGCTGCTTATGATC+AGG | - | chr1_1:33243918-33243937 | Msa0019150:intron | 50.0% |
! | GGTGTCGCAGGTCAATTAGT+TGG | - | chr1_1:33244416-33244435 | Msa0019150:intron | 50.0% |
GTCATCGCTGAAGAAACTGC+AGG | + | chr1_1:33244443-33244462 | None:intergenic | 50.0% | |
AGAATTTCTCAGCTCCAGCG+CGG | + | chr1_1:33244468-33244487 | None:intergenic | 50.0% | |
!! | AGAAGGTTGAGGGCACTTGT+GGG | + | chr1_1:33244515-33244534 | None:intergenic | 50.0% |
GGCAATACAGCAGAAGGTTG+AGG | + | chr1_1:33244526-33244545 | None:intergenic | 50.0% | |
ACCTGTAGCCAAGCTTCTAG+AGG | + | chr1_1:33244547-33244566 | None:intergenic | 50.0% | |
! | TAACACGAGTTGGGACTGGT+TGG | - | chr1_1:33244692-33244711 | Msa0019150:intron | 50.0% |
!! | AACACGAGTTGGGACTGGTT+GGG | - | chr1_1:33244693-33244712 | Msa0019150:intron | 50.0% |
GGTGCTTGATGAAATCGGTG+TGG | - | chr1_1:33244986-33245005 | Msa0019150:intron | 50.0% | |
CAGTTATCAGCAGCTCCCAA+AGG | - | chr1_1:33245113-33245132 | Msa0019150:intron | 50.0% | |
!! | TGACCTTGAGAAGCGTTTGG+CGG | - | chr1_1:33245382-33245401 | Msa0019150:intron | 50.0% |
GCAAGAGGAGAACGATAGTG+AGG | - | chr1_1:33245698-33245717 | Msa0019150:intron | 50.0% | |
TGGCGCTCACCAAGTGTTTG+AGG | - | chr1_1:33240489-33240508 | Msa0019150:intron | 55.0% | |
TCTCTGTTGGTCCGAAGGAG+TGG | - | chr1_1:33241243-33241262 | Msa0019150:CDS | 55.0% | |
AGATCCAGAGCAAGTGCACC+AGG | + | chr1_1:33242124-33242143 | None:intergenic | 55.0% | |
GAAAACGTGAGATGCGGAGG+AGG | - | chr1_1:33243338-33243357 | Msa0019150:CDS | 55.0% | |
TGTGAGGGAACACCAACCAC+TGG | - | chr1_1:33243968-33243987 | Msa0019150:intron | 55.0% | |
ATTGACCTGCGACACCAGCA+GGG | + | chr1_1:33244412-33244431 | None:intergenic | 55.0% | |
AATTGACCTGCGACACCAGC+AGG | + | chr1_1:33244413-33244432 | None:intergenic | 55.0% | |
!! | CAGAAGGTTGAGGGCACTTG+TGG | + | chr1_1:33244516-33244535 | None:intergenic | 55.0% |
! | GCCTCTAGAAGCTTGGCTAC+AGG | - | chr1_1:33244543-33244562 | Msa0019150:intron | 55.0% |
!! | GAGTTGGGACTGGTTGGGAT+TGG | - | chr1_1:33244698-33244717 | Msa0019150:intron | 55.0% |
GTGGATGTTGCCTCACAGGT+AGG | - | chr1_1:33245005-33245024 | Msa0019150:intron | 55.0% | |
CAAAGACCTGTCCTGCCAGC+AGG | + | chr1_1:33241681-33241700 | None:intergenic | 60.0% | |
ATGATGGCAGTTGCCCCTGC+TGG | - | chr1_1:33244395-33244414 | Msa0019150:intron | 60.0% | |
TTGACCTGCGACACCAGCAG+GGG | + | chr1_1:33244411-33244430 | None:intergenic | 60.0% | |
ATTTCTCAGCTCCAGCGCGG+TGG | + | chr1_1:33244465-33244484 | None:intergenic | 60.0% | |
CGGTGTGGATGTTGCCTCAC+AGG | - | chr1_1:33245001-33245020 | Msa0019150:intron | 60.0% | |
GAGCCGCCAAACGCTTCTCA+AGG | + | chr1_1:33245388-33245407 | None:intergenic | 60.0% | |
TTCAGCGATGACCACCGCGC+TGG | - | chr1_1:33244451-33244470 | Msa0019150:intron | 65.0% | |
!! | GTTGCCCCTGCTGGTGTCGC+AGG | - | chr1_1:33244404-33244423 | Msa0019150:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 33239901 | 33245821 | 33239901 | ID=Msa0019150;Name=Msa0019150 |
chr1_1 | mRNA | 33239901 | 33245821 | 33239901 | ID=Msa0019150-mRNA-1;Parent=Msa0019150;Name=Msa0019150-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0.57|0.6|1|0.64|0.6|15|400|433 |
chr1_1 | exon | 33239901 | 33240352 | 33239901 | ID=Msa0019150-mRNA-1:exon:10635;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33240551 | 33240606 | 33240551 | ID=Msa0019150-mRNA-1:exon:10634;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33240700 | 33240735 | 33240700 | ID=Msa0019150-mRNA-1:exon:10633;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33241229 | 33241392 | 33241229 | ID=Msa0019150-mRNA-1:exon:10632;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33241800 | 33241878 | 33241800 | ID=Msa0019150-mRNA-1:exon:10631;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33241971 | 33242045 | 33241971 | ID=Msa0019150-mRNA-1:exon:10630;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33242164 | 33242241 | 33242164 | ID=Msa0019150-mRNA-1:exon:10629;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33242559 | 33242611 | 33242559 | ID=Msa0019150-mRNA-1:exon:10628;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33242617 | 33242707 | 33242617 | ID=Msa0019150-mRNA-1:exon:10627;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33243185 | 33243490 | 33243185 | ID=Msa0019150-mRNA-1:exon:10626;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33243569 | 33243624 | 33243569 | ID=Msa0019150-mRNA-1:exon:10625;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33243970 | 33244033 | 33243970 | ID=Msa0019150-mRNA-1:exon:10624;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33244106 | 33244198 | 33244106 | ID=Msa0019150-mRNA-1:exon:10623;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33244852 | 33244902 | 33244852 | ID=Msa0019150-mRNA-1:exon:10622;Parent=Msa0019150-mRNA-1 |
chr1_1 | exon | 33245774 | 33245821 | 33245774 | ID=Msa0019150-mRNA-1:exon:10621;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33245774 | 33245821 | 33245774 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33244852 | 33244902 | 33244852 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33244106 | 33244198 | 33244106 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33243970 | 33244033 | 33243970 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33243569 | 33243624 | 33243569 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33243185 | 33243490 | 33243185 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33242617 | 33242707 | 33242617 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33242559 | 33242611 | 33242559 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33242164 | 33242241 | 33242164 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33241971 | 33242045 | 33241971 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33241800 | 33241878 | 33241800 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33241229 | 33241392 | 33241229 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33240700 | 33240735 | 33240700 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33240551 | 33240606 | 33240551 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | CDS | 33240301 | 33240352 | 33240301 | ID=Msa0019150-mRNA-1:cds;Parent=Msa0019150-mRNA-1 |
chr1_1 | three_prime_UTR | 33239901 | 33240300 | 33239901 | ID=Msa0019150-mRNA-1:three_prime_utr;Parent=Msa0019150-mRNA-1 |
Gene Sequence |
Protein sequence |