AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTATAATTTGTATATTT+TGG 0.069990 4_2:-45983979 None:intergenic
GCACCTATTATTTCCGTAAA+TGG 0.175758 4_2:+45985854 Msa0602390:three_prime_UTR
TTGCTGGCGGGGTTGCTTTA+AGG 0.196610 4_2:+45984156 Msa0602390:three_prime_UTR
TTGATAGTATTGCCTGTTAA+TGG 0.203420 4_2:-45983432 None:intergenic
ATCCAACACAATGAAGATTA+TGG 0.240565 4_2:+45988869 Msa0602390:three_prime_UTR
TAGCAGAACCCATTTGAAAT+TGG 0.276955 4_2:+45984550 Msa0602390:three_prime_UTR
CATCAAAAGCTCTTTGAACT+TGG 0.317690 4_2:+45988198 Msa0602390:three_prime_UTR
AACACTTCAACAGTATAAAA+AGG 0.319624 4_2:-45984249 None:intergenic
CATCAAAACTAAGGATAGTT+TGG 0.331399 4_2:+45984300 Msa0602390:three_prime_UTR
GCTCCATTTACGGAAATAAT+AGG 0.342954 4_2:-45985857 None:intergenic
CTTTGCCTTCACACTATAAT+CGG 0.346969 4_2:-45984424 None:intergenic
ATGTTTCGAATCTGCTCCTT+TGG 0.355798 4_2:+45982583 Msa0602390:CDS
CATTAGCTCTTTCTCATCAA+TGG 0.358749 4_2:-45984982 None:intergenic
GAGGTGTATATTAGAATTAG+TGG 0.358819 4_2:+45984783 Msa0602390:three_prime_UTR
AGGAAGAGATGCTCCATTTA+CGG 0.360970 4_2:-45985867 None:intergenic
TCAAATACACCAATTTCAAA+TGG 0.374400 4_2:-45984559 None:intergenic
ATGGAGCATCTCTTCCTGTT+TGG 0.386995 4_2:+45985873 Msa0602390:three_prime_UTR
CTATGCAAAGGTTATGTTGC+TGG 0.404154 4_2:+45983264 Msa0602390:CDS
TCCCATAATCTTCATTGTGT+TGG 0.409474 4_2:-45988871 None:intergenic
CGTTTCTTCAACTTCTTCTA+CGG 0.415284 4_2:+45982635 Msa0602390:CDS
GTTGCGTCATTGTTGCTAAA+GGG 0.417737 4_2:-45984956 None:intergenic
CATTGATGAGAAAGAGCTAA+TGG 0.423043 4_2:+45984983 Msa0602390:three_prime_UTR
CTTTCAAGGTCATTCAGAAT+GGG 0.427108 4_2:-45989098 None:intergenic
CTTATATGTTATATTCAAGT+TGG 0.430449 4_2:-45984197 None:intergenic
TGCTGCACTACTCCATTAAC+AGG 0.433500 4_2:+45983420 Msa0602390:exon
CAAATACACCAATTTCAAAT+GGG 0.437469 4_2:-45984558 None:intergenic
TCCAACACAATGAAGATTAT+GGG 0.437849 4_2:+45988870 Msa0602390:three_prime_UTR
AGGAGCAGATTCGAAACATC+TGG 0.437950 4_2:-45982579 None:intergenic
AGTTGCGTCATTGTTGCTAA+AGG 0.438954 4_2:-45984957 None:intergenic
ATTCGAAACATCTGGATCTC+TGG 0.449605 4_2:-45982571 None:intergenic
ATGGAGAAGTTTATCAATGA+AGG 0.453704 4_2:+45985002 Msa0602390:three_prime_UTR
TCCTTGATCCTTCCAAGGTA+AGG 0.459462 4_2:-45982546 None:intergenic
TCTTTCAAGGTCATTCAGAA+TGG 0.459892 4_2:-45989099 None:intergenic
GGTCATTCAGAATGGGGAAA+TGG 0.462437 4_2:-45989091 None:intergenic
CTAGGAAAAGGTAGCACAAT+GGG 0.464069 4_2:+45988765 Msa0602390:intron
TAAGGGTAACTGAGAGATAC+AGG 0.469910 4_2:-45982528 None:intergenic
CCCTTACCTTGGAAGGATCA+AGG 0.470403 4_2:+45982545 Msa0602390:CDS
AAGGTAGCACAATGGGATCA+TGG 0.473717 4_2:+45988772 Msa0602390:three_prime_UTR
TTCTACCAGAGTCAGTGAAA+TGG 0.475599 4_2:-45984467 None:intergenic
TTTCCATATCATCAAAACTA+AGG 0.483553 4_2:+45984291 Msa0602390:three_prime_UTR
AACAGATGGAGGAAGTTTCA+AGG 0.486657 4_2:-45982486 None:intergenic
CTGCTCCTTTGGCTCAGACA+TGG 0.487284 4_2:+45982594 Msa0602390:CDS
GAAAGTGTGCATATGTTCTA+TGG 0.487435 4_2:+45984041 Msa0602390:three_prime_UTR
AAAATTGATCTTTCAAACAA+TGG 0.489807 4_2:-45984892 None:intergenic
TATGATTACCTTGATTATGT+AGG 0.491010 4_2:-45985905 None:intergenic
ATCAAAAGCTCTTTGAACTT+GGG 0.493558 4_2:+45988199 Msa0602390:three_prime_UTR
GTAGGAGTTGATCTCCAAAC+AGG 0.497937 4_2:-45985887 None:intergenic
CATTACCATTTCACTGACTC+TGG 0.500609 4_2:+45984462 Msa0602390:three_prime_UTR
AGAATGACAAGGAGAGAAGA+TGG 0.502575 4_2:+45985832 Msa0602390:three_prime_UTR
TCAGTTACCCTTACCTTGGA+AGG 0.513094 4_2:+45982538 Msa0602390:CDS
CACTATAATCGGAGTACTGA+AGG 0.519436 4_2:-45984413 None:intergenic
TGTGCATATGTTCTATGGCT+TGG 0.527509 4_2:+45984046 Msa0602390:three_prime_UTR
GATCAACTCCTACATAATCA+AGG 0.538359 4_2:+45985897 Msa0602390:three_prime_UTR
AGGTAGCACAATGGGATCAT+GGG 0.539193 4_2:+45988773 Msa0602390:three_prime_UTR
TCTCTCAGTTACCCTTACCT+TGG 0.542019 4_2:+45982534 Msa0602390:CDS
TTGCGTCATTGTTGCTAAAG+GGG 0.545310 4_2:-45984955 None:intergenic
CATATGTGATCTCGAACAGA+TGG 0.554567 4_2:-45982500 None:intergenic
TGGTCTCCTTGATCCTTCCA+AGG 0.555946 4_2:-45982551 None:intergenic
TAGATTTGGGTACTATGCAA+AGG 0.563344 4_2:+45983252 Msa0602390:intron
AGCAACCATGTCTGAGCCAA+AGG 0.563861 4_2:-45982599 None:intergenic
TTCTTTAATGACAAATCATG+TGG 0.575518 4_2:-45984592 None:intergenic
TCAAGTGGAAAGAAATGGAA+AGG 0.576861 4_2:+45988827 Msa0602390:three_prime_UTR
CCTTGATCCTTCCAAGGTAA+GGG 0.585722 4_2:-45982545 None:intergenic
TAGGCTATAGATACTGCAGC+AGG 0.587666 4_2:+45989034 Msa0602390:three_prime_UTR
TCATATTTATAATACAACAT+AGG 0.588298 4_2:+45989015 Msa0602390:three_prime_UTR
TTCAAGATTTATGTAGCATG+AGG 0.590585 4_2:-45984523 None:intergenic
TTTCAAGGTCATTCAGAATG+GGG 0.607965 4_2:-45989097 None:intergenic
TTTCTTTGCTGATTATACTG+AGG 0.608431 4_2:+45988173 Msa0602390:three_prime_UTR
AATAAAATAAATTCTGCTAG+CGG 0.620315 4_2:+45989067 Msa0602390:three_prime_UTR
GTACTCCGATTATAGTGTGA+AGG 0.623559 4_2:+45984419 Msa0602390:three_prime_UTR
ATGTGATCTCGAACAGATGG+AGG 0.628208 4_2:-45982497 None:intergenic
CAATATAGGAGGTCGTGTCA+AGG 0.639850 4_2:+45985804 Msa0602390:intron
CCTAGGAAAAGGTAGCACAA+TGG 0.680303 4_2:+45988764 Msa0602390:intron
TCAAGGAGAGAAGAATGACA+AGG 0.695837 4_2:+45985821 Msa0602390:three_prime_UTR
AAGAAGTTGAAGAAACGACA+CGG 0.725477 4_2:-45982629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTAATTGAGTTT+AGG + chr4_2:45983072-45983091 Msa0602390:intron 10.0%
!!! TTTAATTTTAATTGAGTTTA+GGG + chr4_2:45983073-45983092 Msa0602390:intron 10.0%
!!! TTATTTTTCATTATAGATTT+GGG + chr4_2:45983239-45983258 Msa0602390:intron 10.0%
!!! TATCTATAATTTGTATATTT+TGG - chr4_2:45983982-45984001 None:intergenic 10.0%
!! TATAACTTCTATAATTAAAA+TGG - chr4_2:45985038-45985057 None:intergenic 10.0%
!!! ATTTTAATTATAGAAGTTAT+AGG + chr4_2:45985037-45985056 Msa0602390:intron 10.0%
!!! TATAGATAATATTTCTAATT+AGG + chr4_2:45985281-45985300 Msa0602390:intron 10.0%
!!! TGATATTTTTTTTTATCATT+AGG + chr4_2:45986746-45986765 Msa0602390:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr4_2:45987010-45987029 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr4_2:45987011-45987030 None:intergenic 10.0%
!!! AAAACATGATATTATTTTAT+TGG - chr4_2:45987245-45987264 None:intergenic 10.0%
!!! TATTTTTTTTAGAAATGTTA+AGG - chr4_2:45987815-45987834 None:intergenic 10.0%
!!! TTTTGATAGAAAACAATAAA+TGG + chr4_2:45982663-45982682 Msa0602390:intron 15.0%
!!! ATTTAATTTGAATTGAGTTT+AGG + chr4_2:45982993-45983012 Msa0602390:intron 15.0%
!!! TTTAATTTGAATTGAGTTTA+GGG + chr4_2:45982994-45983013 Msa0602390:intron 15.0%
!!! CTTATTTTTCATTATAGATT+TGG + chr4_2:45983238-45983257 Msa0602390:intron 15.0%
!!! ATTTGTTTTCTTTTTAAATG+TGG + chr4_2:45984078-45984097 Msa0602390:three_prime_UTR 15.0%
!!! GTATTTTATATTGCTTTATA+TGG - chr4_2:45984843-45984862 None:intergenic 15.0%
!! ATTCAATAAAATTGAACAAA+AGG - chr4_2:45985955-45985974 None:intergenic 15.0%
!!! AGTTCAAAATTTATTTTGAA+AGG - chr4_2:45986131-45986150 None:intergenic 15.0%
!!! CTTATTTTGTCTAAAAAATA+TGG + chr4_2:45986664-45986683 Msa0602390:intron 15.0%
!!! ATTTTAGTTCAAAAATATGT+AGG + chr4_2:45986806-45986825 Msa0602390:intron 15.0%
!!! TTTTAGTTCAAAAATATGTA+GGG + chr4_2:45986807-45986826 Msa0602390:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr4_2:45987009-45987028 None:intergenic 15.0%
!!! TGTTTAAAAAAATTTTTTGG+CGG - chr4_2:45987744-45987763 None:intergenic 15.0%
!!! ATTTCTAAAAAAAATACCTA+TGG + chr4_2:45987819-45987838 Msa0602390:intron 15.0%
!! TCATATTTATAATACAACAT+AGG + chr4_2:45989015-45989034 Msa0602390:three_prime_UTR 15.0%
!! TTGTATTAAAATGTATACTC+TGG + chr4_2:45982824-45982843 Msa0602390:intron 20.0%
!! TCCAATTTGAATTTAATTCA+AGG + chr4_2:45982874-45982893 Msa0602390:intron 20.0%
!! ACCTTGAATTAAATTCAAAT+TGG - chr4_2:45982878-45982897 None:intergenic 20.0%
!! AATCACACACATAAATAAAA+TGG - chr4_2:45983472-45983491 None:intergenic 20.0%
!! TAGCAATTTCATATATTAGA+AGG - chr4_2:45983536-45983555 None:intergenic 20.0%
!!! TTTTCCTCAATTCATTTAAA+TGG + chr4_2:45983588-45983607 Msa0602390:intron 20.0%
!! AAAACCATTTAAATGAATTG+AGG - chr4_2:45983595-45983614 None:intergenic 20.0%
!!! AACTAAATTTTACTCTATCA+TGG - chr4_2:45983629-45983648 None:intergenic 20.0%
!!! TTGACTTTTTCAATAAAAGT+AGG + chr4_2:45983909-45983928 Msa0602390:three_prime_UTR 20.0%
!! CTTATATGTTATATTCAAGT+TGG - chr4_2:45984200-45984219 None:intergenic 20.0%
!! AAAATTGATCTTTCAAACAA+TGG - chr4_2:45984895-45984914 None:intergenic 20.0%
!!! TGAAAGATCAATTTTCTAAT+TGG + chr4_2:45984900-45984919 Msa0602390:three_prime_UTR 20.0%
!! AAAATAAACAGTAGATTGAT+TGG - chr4_2:45985129-45985148 None:intergenic 20.0%
!! GTAGTAAGAATAATGTAATT+TGG + chr4_2:45985212-45985231 Msa0602390:intron 20.0%
!! ACATGATTTCATCAATTAAA+AGG - chr4_2:45985355-45985374 None:intergenic 20.0%
!! GAAAATTGATGTAACAATAT+AGG + chr4_2:45985790-45985809 Msa0602390:intron 20.0%
!! TATCATTATGAAGTATGAAA+CGG - chr4_2:45986356-45986375 None:intergenic 20.0%
!! ATTACTTCTATCAAATTATC+TGG + chr4_2:45986521-45986540 Msa0602390:intron 20.0%
!!! TTTTAGACAAAATAAGTTTG+AGG - chr4_2:45986660-45986679 None:intergenic 20.0%
!!! ATTTCAAAATCTTACTGTTT+TGG - chr4_2:45986834-45986853 None:intergenic 20.0%
!!! AAACAGTAAGATTTTGAAAT+TGG + chr4_2:45986834-45986853 Msa0602390:intron 20.0%
!!! AACAGTAAGATTTTGAAATT+GGG + chr4_2:45986835-45986854 Msa0602390:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr4_2:45986917-45986936 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr4_2:45986953-45986972 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr4_2:45986954-45986973 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr4_2:45986986-45987005 None:intergenic 20.0%
!! TATTTAACCAACCAATATTA+CGG - chr4_2:45987100-45987119 None:intergenic 20.0%
!!! TTTTTTGATTTTCTAGATCT+AGG - chr4_2:45987846-45987865 None:intergenic 20.0%
!! AAGATATTATCATACAAAGT+TGG - chr4_2:45988330-45988349 None:intergenic 20.0%
!!! AACTTTTGTAAGATTTTAGT+GGG + chr4_2:45988362-45988381 Msa0602390:intron 20.0%
!! AAGAAATTATCATGTTAATC+TGG - chr4_2:45988394-45988413 None:intergenic 20.0%
!! CAGAAATTAAAATTTACAGT+TGG - chr4_2:45988526-45988545 None:intergenic 20.0%
!!! CAACTGTAAATTTTAATTTC+TGG + chr4_2:45988524-45988543 Msa0602390:intron 20.0%
!!! TATTATTTTTACATATGCCA+AGG - chr4_2:45988668-45988687 None:intergenic 20.0%
!! GTAAAAATAATAGAATGAAG+TGG + chr4_2:45988676-45988695 Msa0602390:intron 20.0%
!!! AGTGTGTAAATTTTTTTTTC+AGG + chr4_2:45988941-45988960 Msa0602390:three_prime_UTR 20.0%
!! AATAAAATAAATTCTGCTAG+CGG + chr4_2:45989067-45989086 Msa0602390:three_prime_UTR 20.0%
! ATATGAAAATGATCTTACAG+TGG - chr4_2:45982850-45982869 None:intergenic 25.0%
! GAATTAAATTCAAATTGGAC+TGG - chr4_2:45982873-45982892 None:intergenic 25.0%
!! TCGAATTTTTGCATTTCTTT+TGG + chr4_2:45983188-45983207 Msa0602390:intron 25.0%
!! AATTTTTGCATTTCTTTTGG+AGG + chr4_2:45983191-45983210 Msa0602390:intron 25.0%
! TAAGAACAAAACATACATGT+AGG - chr4_2:45983222-45983241 None:intergenic 25.0%
! AATCAAAACAGAGAAAATAG+TGG + chr4_2:45983314-45983333 Msa0602390:intron 25.0%
! AAATAGGAATATTGAGAATG+AGG - chr4_2:45983389-45983408 None:intergenic 25.0%
! ATTCTCAATATTCCTATTTC+AGG + chr4_2:45983390-45983409 Msa0602390:intron 25.0%
! GAATAGAGAAAGTAATTGTT+TGG - chr4_2:45983739-45983758 None:intergenic 25.0%
!! TATGAATATCTCTTATTTGC+AGG + chr4_2:45983849-45983868 Msa0602390:intron 25.0%
!! AAAGCTTCTTCTTTTAACAA+AGG - chr4_2:45983889-45983908 None:intergenic 25.0%
!! TCTTGAATAAAATGTTTTGC+TGG + chr4_2:45984140-45984159 Msa0602390:three_prime_UTR 25.0%
!! TCAACAGTATAAAAAGGTAT+TGG - chr4_2:45984246-45984265 None:intergenic 25.0%
! AACACTTCAACAGTATAAAA+AGG - chr4_2:45984252-45984271 None:intergenic 25.0%
! TTTCCATATCATCAAAACTA+AGG + chr4_2:45984291-45984310 Msa0602390:three_prime_UTR 25.0%
!!! TATCCTTAGTTTTGATGATA+TGG - chr4_2:45984297-45984316 None:intergenic 25.0%
! CAAATACACCAATTTCAAAT+GGG - chr4_2:45984561-45984580 None:intergenic 25.0%
! TCAAATACACCAATTTCAAA+TGG - chr4_2:45984562-45984581 None:intergenic 25.0%
! TTCTTTAATGACAAATCATG+TGG - chr4_2:45984595-45984614 None:intergenic 25.0%
!! TTGCATTTTTCCAAATTCAT+GGG - chr4_2:45984762-45984781 None:intergenic 25.0%
!! TTTGCATTTTTCCAAATTCA+TGG - chr4_2:45984763-45984782 None:intergenic 25.0%
!!! TTATTTTAGAGTTCTTCACA+AGG - chr4_2:45985250-45985269 None:intergenic 25.0%
! AATTGATGTAACAATATAGG+AGG + chr4_2:45985793-45985812 Msa0602390:intron 25.0%
! TATGATTACCTTGATTATGT+AGG - chr4_2:45985908-45985927 None:intergenic 25.0%
! AGGTTAACATATGATATGTT+GGG - chr4_2:45985935-45985954 None:intergenic 25.0%
! AAGGTTAACATATGATATGT+TGG - chr4_2:45985936-45985955 None:intergenic 25.0%
! TTAAGTTTAACAGAGTTCTA+CGG - chr4_2:45986040-45986059 None:intergenic 25.0%
!! ATAATGATATGCGTTTTTGT+TGG + chr4_2:45986367-45986386 Msa0602390:intron 25.0%
!! TACACTATTAATTGCAGTTT+TGG + chr4_2:45986629-45986648 Msa0602390:intron 25.0%
!!! TTTTGGCTTAATTGTAGTTT+TGG - chr4_2:45986864-45986883 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr4_2:45986918-45986937 None:intergenic 25.0%
!! TGAAATGGGTCAATTATTTT+GGG - chr4_2:45986939-45986958 None:intergenic 25.0%
!! TTGAAATGGGTCAATTATTT+TGG - chr4_2:45986940-45986959 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr4_2:45986987-45987006 None:intergenic 25.0%
! TAATTGCAATACCGTAATAT+TGG + chr4_2:45987086-45987105 Msa0602390:intron 25.0%
! CTCGAATAAAAAGGTTAAAT+TGG + chr4_2:45987138-45987157 Msa0602390:intron 25.0%
! ATATTAAAATGACATTTGCG+AGG + chr4_2:45987169-45987188 Msa0602390:intron 25.0%
!!! ACTTTTTTGTGTAAATTGTG+AGG + chr4_2:45987201-45987220 Msa0602390:intron 25.0%
! TCTATAACATCTTAATGAAG+AGG - chr4_2:45987320-45987339 None:intergenic 25.0%
! GAAATGAATGAATTTGTGAA+GGG - chr4_2:45987562-45987581 None:intergenic 25.0%
! AGAAATGAATGAATTTGTGA+AGG - chr4_2:45987563-45987582 None:intergenic 25.0%
!!! TTAAAAAAATTTTTTGGCGG+CGG - chr4_2:45987741-45987760 None:intergenic 25.0%
!! TTCCAAGATTTAAAGTTTCT+AGG + chr4_2:45988044-45988063 Msa0602390:intron 25.0%
!! TCCAAGATTTAAAGTTTCTA+GGG + chr4_2:45988045-45988064 Msa0602390:intron 25.0%
!! CAACTTTTGTAAGATTTTAG+TGG + chr4_2:45988361-45988380 Msa0602390:intron 25.0%
! CTTTAAATCATACATAAAGC+TGG - chr4_2:45988606-45988625 None:intergenic 25.0%
!! TTCTGCTATAGATCATTTTA+TGG - chr4_2:45988633-45988652 None:intergenic 25.0%
! ACAAAGCAATAAAAATCAAG+TGG + chr4_2:45988812-45988831 Msa0602390:three_prime_UTR 25.0%
! AAAAATCAAGTGGAAAGAAA+TGG + chr4_2:45988822-45988841 Msa0602390:three_prime_UTR 25.0%
! AAAGAAATGGAAAGGAAAAA+AGG + chr4_2:45988835-45988854 Msa0602390:three_prime_UTR 25.0%
CAACATGAATGATCGATTAA+AGG + chr4_2:45982915-45982934 Msa0602390:intron 30.0%
CAGCAATTTCATTCATATCT+CGG - chr4_2:45982950-45982969 None:intergenic 30.0%
! GTTCTTATATTTCTGCAGTT+TGG + chr4_2:45983336-45983355 Msa0602390:intron 30.0%
! TTGATAGTATTGCCTGTTAA+TGG - chr4_2:45983435-45983454 None:intergenic 30.0%
!!! TTCTCTATTCCTTTTTCAAC+TGG + chr4_2:45983749-45983768 Msa0602390:intron 30.0%
TTTGTTAGAAGATTTAGTCC+TGG + chr4_2:45983800-45983819 Msa0602390:intron 30.0%
TGTGCAAATTAACTATAACC+AGG - chr4_2:45983821-45983840 None:intergenic 30.0%
!!! AAAGTAGGCTTTTTGACTTT+TGG + chr4_2:45983924-45983943 Msa0602390:three_prime_UTR 30.0%
!!! TCTGTAATGGCTTTTTTAAG+AGG + chr4_2:45983950-45983969 Msa0602390:three_prime_UTR 30.0%
! TGAATAAAATGTTTTGCTGG+CGG + chr4_2:45984143-45984162 Msa0602390:three_prime_UTR 30.0%
CATCAAAACTAAGGATAGTT+TGG + chr4_2:45984300-45984319 Msa0602390:three_prime_UTR 30.0%
TTCAAGATTTATGTAGCATG+AGG - chr4_2:45984526-45984545 None:intergenic 30.0%
! TTTTATTGACCCCATGAATT+TGG + chr4_2:45984749-45984768 Msa0602390:three_prime_UTR 30.0%
! TGCATTTTTCCAAATTCATG+GGG - chr4_2:45984761-45984780 None:intergenic 30.0%
GAATTTGGAAAAATGCAAAG+AGG + chr4_2:45984764-45984783 Msa0602390:three_prime_UTR 30.0%
GAGGTGTATATTAGAATTAG+TGG + chr4_2:45984783-45984802 Msa0602390:three_prime_UTR 30.0%
ATGGAGAAGTTTATCAATGA+AGG + chr4_2:45985002-45985021 Msa0602390:three_prime_UTR 30.0%
AGTTTATCAATGAAGGTTAG+TGG + chr4_2:45985009-45985028 Msa0602390:intron 30.0%
TATCTATTAGAACTGCTTAG+AGG - chr4_2:45985165-45985184 None:intergenic 30.0%
! AGCAGTTCTAATAGATATGA+TGG + chr4_2:45985168-45985187 Msa0602390:intron 30.0%
TCCTATGATGAATTCCATAT+GGG - chr4_2:45985325-45985344 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+TGG - chr4_2:45985326-45985345 None:intergenic 30.0%
GATGAAATCATGTTCCAAAT+TGG + chr4_2:45985362-45985381 Msa0602390:intron 30.0%
! AAAATGTGAGCATTTTGCTT+TGG - chr4_2:45985721-45985740 None:intergenic 30.0%
! TTCAGAGAACACTTCTAAAA+AGG - chr4_2:45985758-45985777 None:intergenic 30.0%
TAACATATGATATGTTGGGT+GGG - chr4_2:45985931-45985950 None:intergenic 30.0%
TTAACATATGATATGTTGGG+TGG - chr4_2:45985932-45985951 None:intergenic 30.0%
GTTAAACTTAATCTACACCT+TGG + chr4_2:45986049-45986068 Msa0602390:intron 30.0%
! CTTTTTATGCAATTTGTCCA+AGG - chr4_2:45986069-45986088 None:intergenic 30.0%
AAATCACAACAGTAACATGA+AGG - chr4_2:45986192-45986211 None:intergenic 30.0%
ATGGAAATATTTCACGAATG+AGG - chr4_2:45986397-45986416 None:intergenic 30.0%
CAAATTATCTGGTTATCTCA+TGG + chr4_2:45986532-45986551 Msa0602390:intron 30.0%
!!! AGAAGATAGTTTTGATAGCA+AGG - chr4_2:45986559-45986578 None:intergenic 30.0%
!!! AGAAGATAGTTTTGATAGCA+AGG - chr4_2:45986559-45986578 None:intergenic 30.0%
CAAAACTATCTTCTGATACA+AGG + chr4_2:45986605-45986624 Msa0602390:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr4_2:45987002-45987021 None:intergenic 30.0%
GGTTAAATATGTTAGACATC+CGG + chr4_2:45987111-45987130 Msa0602390:intron 30.0%
!! ACCTTTTTATTCGAGTTAAC+CGG - chr4_2:45987133-45987152 None:intergenic 30.0%
! TCATTTGTTCTCAATTTGCT+TGG + chr4_2:45987368-45987387 Msa0602390:intron 30.0%
! CATTTGTTCTCAATTTGCTT+GGG + chr4_2:45987369-45987388 Msa0602390:intron 30.0%
AAGAGAAGGAAGAAATACAT+AGG - chr4_2:45987781-45987800 None:intergenic 30.0%
AGAAATGTTAAGGCTAGAAA+CGG - chr4_2:45987805-45987824 None:intergenic 30.0%
!!! TGCTGTGTTTTGTTTTTTTG+AGG + chr4_2:45987971-45987990 Msa0602390:intron 30.0%
!!! TTTTGAGGTTTTGAGAATGT+TGG + chr4_2:45987986-45988005 Msa0602390:intron 30.0%
! TTTGAGAATGTTGGTGAATT+CGG + chr4_2:45987995-45988014 Msa0602390:intron 30.0%
ACCCTAGAAACTTTAAATCT+TGG - chr4_2:45988049-45988068 None:intergenic 30.0%
!!! TGATTTTGGTTATGTGTTGT+TGG + chr4_2:45988086-45988105 Msa0602390:intron 30.0%
! TAATGATTCTCATTTGTTGC+AGG + chr4_2:45988143-45988162 Msa0602390:intron 30.0%
! TTTCTTTGCTGATTATACTG+AGG + chr4_2:45988173-45988192 Msa0602390:three_prime_UTR 30.0%
ATCAAAAGCTCTTTGAACTT+GGG + chr4_2:45988199-45988218 Msa0602390:three_prime_UTR 30.0%
ATCCAACACAATGAAGATTA+TGG + chr4_2:45988869-45988888 Msa0602390:three_prime_UTR 30.0%
TCCAACACAATGAAGATTAT+GGG + chr4_2:45988870-45988889 Msa0602390:three_prime_UTR 30.0%
AAGAAGTTGAAGAAACGACA+CGG - chr4_2:45982632-45982651 None:intergenic 35.0%
CGTTTCTTCAACTTCTTCTA+CGG + chr4_2:45982635-45982654 Msa0602390:CDS 35.0%
! CTGTGCTGAGTAAAAGTTTT+TGG + chr4_2:45982688-45982707 Msa0602390:intron 35.0%
TTAATACAAGACGCACAACA+GGG - chr4_2:45982813-45982832 None:intergenic 35.0%
TTTAATACAAGACGCACAAC+AGG - chr4_2:45982814-45982833 None:intergenic 35.0%
TAGATTTGGGTACTATGCAA+AGG + chr4_2:45983252-45983271 Msa0602390:intron 35.0%
TTGAGAATGAGGACAACAAA+AGG - chr4_2:45983378-45983397 None:intergenic 35.0%
TTGCTACCAATCTGAGTTAT+AGG + chr4_2:45983550-45983569 Msa0602390:intron 35.0%
CTAGATCCTATAACTCAGAT+TGG - chr4_2:45983559-45983578 None:intergenic 35.0%
! GTTTGGAATGCAATAAACAC+TGG - chr4_2:45983722-45983741 None:intergenic 35.0%
AAAATGGCACCAGTTGAAAA+AGG - chr4_2:45983761-45983780 None:intergenic 35.0%
! TGACTTTTGGTCATCTGTAA+TGG + chr4_2:45983937-45983956 Msa0602390:three_prime_UTR 35.0%
! GAAAGTGTGCATATGTTCTA+TGG + chr4_2:45984041-45984060 Msa0602390:three_prime_UTR 35.0%
! GAATAAAATGTTTTGCTGGC+GGG + chr4_2:45984144-45984163 Msa0602390:three_prime_UTR 35.0%
! AATAAAATGTTTTGCTGGCG+GGG + chr4_2:45984145-45984164 Msa0602390:three_prime_UTR 35.0%
CTTTGCCTTCACACTATAAT+CGG - chr4_2:45984427-45984446 None:intergenic 35.0%
! TAGCAGAACCCATTTGAAAT+TGG + chr4_2:45984550-45984569 Msa0602390:three_prime_UTR 35.0%
! CATTAGCTCTTTCTCATCAA+TGG - chr4_2:45984985-45985004 None:intergenic 35.0%
CATTGATGAGAAAGAGCTAA+TGG + chr4_2:45984983-45985002 Msa0602390:three_prime_UTR 35.0%
TTGGAGAAGCAAAAATCGTT+TGG - chr4_2:45985110-45985129 None:intergenic 35.0%
TCAAGTAATCATGTCCCATA+TGG + chr4_2:45985308-45985327 Msa0602390:intron 35.0%
TCCCATATGGAATTCATCAT+AGG + chr4_2:45985321-45985340 Msa0602390:intron 35.0%
TAAGGACATGCTAACCAATT+TGG - chr4_2:45985379-45985398 None:intergenic 35.0%
CAGATATAGTCGCTATTGTA+AGG - chr4_2:45985397-45985416 None:intergenic 35.0%
GCACCTATTATTTCCGTAAA+TGG + chr4_2:45985854-45985873 Msa0602390:three_prime_UTR 35.0%
GCTCCATTTACGGAAATAAT+AGG - chr4_2:45985860-45985879 None:intergenic 35.0%
GATCAACTCCTACATAATCA+AGG + chr4_2:45985897-45985916 Msa0602390:three_prime_UTR 35.0%
AGTTCTACGGAATTGGAATT+TGG - chr4_2:45986027-45986046 None:intergenic 35.0%
TTAACAGAGTTCTACGGAAT+TGG - chr4_2:45986034-45986053 None:intergenic 35.0%
AGTTGATTGTGGAAGAGAAA+TGG + chr4_2:45986228-45986247 Msa0602390:intron 35.0%
! ACTCTTTGCTAGCTTAGTTA+TGG - chr4_2:45986268-45986287 None:intergenic 35.0%
GAAATATTTCACGAATGAGG+AGG - chr4_2:45986394-45986413 None:intergenic 35.0%
ATGAGCTGATAGACACTATA+GGG - chr4_2:45986421-45986440 None:intergenic 35.0%
AATGAGCTGATAGACACTAT+AGG - chr4_2:45986422-45986441 None:intergenic 35.0%
ATCTTCTGATACCAATCTCA+TGG + chr4_2:45986572-45986591 Msa0602390:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr4_2:45986904-45986923 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG + chr4_2:45987030-45987049 Msa0602390:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG + chr4_2:45987031-45987050 Msa0602390:intron 35.0%
TGCAATACCGTAATATTGGT+TGG + chr4_2:45987090-45987109 Msa0602390:intron 35.0%
TCCGGTTAACTCGAATAAAA+AGG + chr4_2:45987129-45987148 Msa0602390:intron 35.0%
TTAATGAAGAGGCAAGTGTA+AGG - chr4_2:45987309-45987328 None:intergenic 35.0%
AGGGTCGTTGATCAAATAAA+TGG - chr4_2:45987415-45987434 None:intergenic 35.0%
TCGTCTGATCTTAAATCAGA+CGG - chr4_2:45987467-45987486 None:intergenic 35.0%
AATGAATTTGTGAAGGGAGT+GGG - chr4_2:45987556-45987575 None:intergenic 35.0%
GAAATGTTAAGGCTAGAAAC+GGG - chr4_2:45987804-45987823 None:intergenic 35.0%
!! TTTTCTAGATCTAGGACCAT+AGG - chr4_2:45987838-45987857 None:intergenic 35.0%
!!! CCTTTGTTTTTTGTCTGTTC+CGG + chr4_2:45987872-45987891 Msa0602390:intron 35.0%
!! TAATACTTGGTGCTCTGATT+CGG + chr4_2:45987897-45987916 Msa0602390:intron 35.0%
!! GTTGGCACAGTTTTATGATT+TGG + chr4_2:45987933-45987952 Msa0602390:intron 35.0%
! AATGTTGGTGAATTCGGATT+TGG + chr4_2:45988001-45988020 Msa0602390:intron 35.0%
AACACATAACCAAAATCAGC+AGG - chr4_2:45988084-45988103 None:intergenic 35.0%
CATCAAAAGCTCTTTGAACT+TGG + chr4_2:45988198-45988217 Msa0602390:three_prime_UTR 35.0%
!!! GCAAAGCTGAATTTTTTCAC+TGG - chr4_2:45988443-45988462 None:intergenic 35.0%
CAGAAATTCGATGAATACCT+TGG + chr4_2:45988648-45988667 Msa0602390:intron 35.0%
AAGTGGTTGAATAGTGTAGT+TGG + chr4_2:45988693-45988712 Msa0602390:intron 35.0%
TTTCTCTAATAATCTCCCCT+AGG + chr4_2:45988747-45988766 Msa0602390:intron 35.0%
TAATAATCTCCCCTAGGAAA+AGG + chr4_2:45988753-45988772 Msa0602390:intron 35.0%
TCAAGTGGAAAGAAATGGAA+AGG + chr4_2:45988827-45988846 Msa0602390:three_prime_UTR 35.0%
TCCCATAATCTTCATTGTGT+TGG - chr4_2:45988874-45988893 None:intergenic 35.0%
TTTCAAGGTCATTCAGAATG+GGG - chr4_2:45989100-45989119 None:intergenic 35.0%
AACAGATGGAGGAAGTTTCA+AGG - chr4_2:45982489-45982508 None:intergenic 40.0%
CATATGTGATCTCGAACAGA+TGG - chr4_2:45982503-45982522 None:intergenic 40.0%
TAAGGGTAACTGAGAGATAC+AGG - chr4_2:45982531-45982550 None:intergenic 40.0%
ATTCGAAACATCTGGATCTC+TGG - chr4_2:45982574-45982593 None:intergenic 40.0%
ATGTTTCGAATCTGCTCCTT+TGG + chr4_2:45982583-45982602 Msa0602390:CDS 40.0%
GACAGAAAGAATGAAGAAGC+GGG - chr4_2:45982756-45982775 None:intergenic 40.0%
CGACAGAAAGAATGAAGAAG+CGG - chr4_2:45982757-45982776 None:intergenic 40.0%
! TCTGTCGTTTACGCGATATA+AGG + chr4_2:45982770-45982789 Msa0602390:intron 40.0%
CTTGCTTAGAACACACAATG+AGG + chr4_2:45983100-45983119 Msa0602390:intron 40.0%
CTATGCAAAGGTTATGTTGC+TGG + chr4_2:45983264-45983283 Msa0602390:CDS 40.0%
GAATGAGGACAACAAAAGGA+TGG - chr4_2:45983374-45983393 None:intergenic 40.0%
CAGCAAGATCTACCTGAAAT+AGG - chr4_2:45983405-45983424 None:intergenic 40.0%
TGTGCATATGTTCTATGGCT+TGG + chr4_2:45984046-45984065 Msa0602390:three_prime_UTR 40.0%
!! CACTATAATCGGAGTACTGA+AGG - chr4_2:45984416-45984435 None:intergenic 40.0%
GTACTCCGATTATAGTGTGA+AGG + chr4_2:45984419-45984438 Msa0602390:three_prime_UTR 40.0%
!! CATTACCATTTCACTGACTC+TGG + chr4_2:45984462-45984481 Msa0602390:three_prime_UTR 40.0%
TTCTACCAGAGTCAGTGAAA+TGG - chr4_2:45984470-45984489 None:intergenic 40.0%
TTGCGTCATTGTTGCTAAAG+GGG - chr4_2:45984958-45984977 None:intergenic 40.0%
GTTGCGTCATTGTTGCTAAA+GGG - chr4_2:45984959-45984978 None:intergenic 40.0%
AGTTGCGTCATTGTTGCTAA+AGG - chr4_2:45984960-45984979 None:intergenic 40.0%
TCAAGGAGAGAAGAATGACA+AGG + chr4_2:45985821-45985840 Msa0602390:three_prime_UTR 40.0%
AGAATGACAAGGAGAGAAGA+TGG + chr4_2:45985832-45985851 Msa0602390:three_prime_UTR 40.0%
AGGAAGAGATGCTCCATTTA+CGG - chr4_2:45985870-45985889 None:intergenic 40.0%
CTCTTCCACAATCAACTCAT+GGG - chr4_2:45986225-45986244 None:intergenic 40.0%
TCTCTTCCACAATCAACTCA+TGG - chr4_2:45986226-45986245 None:intergenic 40.0%
CTGATAGACACTATAGGGTA+TGG - chr4_2:45986416-45986435 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr4_2:45986903-45986922 None:intergenic 40.0%
TAAGTGTGAAATGAGCCAAG+GGG + chr4_2:45987032-45987051 Msa0602390:intron 40.0%
AGCCAAGGGGTCAATTAATT+CGG + chr4_2:45987045-45987064 Msa0602390:intron 40.0%
! TGATTTAAGATCAGACGACC+TGG + chr4_2:45987469-45987488 Msa0602390:intron 40.0%
GAATGAATTTGTGAAGGGAG+TGG - chr4_2:45987557-45987576 None:intergenic 40.0%
CCGGAACAGACAAAAAACAA+AGG - chr4_2:45987875-45987894 None:intergenic 40.0%
GTCTGTTCCGGTTTAATACT+TGG + chr4_2:45987884-45987903 Msa0602390:intron 40.0%
! CAGAGCACCAAGTATTAAAC+CGG - chr4_2:45987894-45987913 None:intergenic 40.0%
!! GCACAGTTTTATGATTTGGC+CGG + chr4_2:45987937-45987956 Msa0602390:intron 40.0%
!! GTTTTATGATTTGGCCGGTT+TGG + chr4_2:45987942-45987961 Msa0602390:intron 40.0%
! ATTGTGCTACCTTTTCCTAG+GGG - chr4_2:45988765-45988784 None:intergenic 40.0%
! CATTGTGCTACCTTTTCCTA+GGG - chr4_2:45988766-45988785 None:intergenic 40.0%
CTAGGAAAAGGTAGCACAAT+GGG + chr4_2:45988765-45988784 Msa0602390:intron 40.0%
ATGTGATCTCGAACAGATGG+AGG - chr4_2:45982500-45982519 None:intergenic 45.0%
TCTCTCAGTTACCCTTACCT+TGG + chr4_2:45982534-45982553 Msa0602390:CDS 45.0%
TCAGTTACCCTTACCTTGGA+AGG + chr4_2:45982538-45982557 Msa0602390:CDS 45.0%
CCTTGATCCTTCCAAGGTAA+GGG - chr4_2:45982548-45982567 None:intergenic 45.0%
TCCTTGATCCTTCCAAGGTA+AGG - chr4_2:45982549-45982568 None:intergenic 45.0%
AGGAGCAGATTCGAAACATC+TGG - chr4_2:45982582-45982601 None:intergenic 45.0%
GCACAACAGGGTCAACATTT+AGG - chr4_2:45982801-45982820 None:intergenic 45.0%
TGCTGCACTACTCCATTAAC+AGG + chr4_2:45983420-45983439 Msa0602390:exon 45.0%
CAATATAGGAGGTCGTGTCA+AGG + chr4_2:45985804-45985823 Msa0602390:intron 45.0%
! ATGGAGCATCTCTTCCTGTT+TGG + chr4_2:45985873-45985892 Msa0602390:three_prime_UTR 45.0%
! GTAGGAGTTGATCTCCAAAC+AGG - chr4_2:45985890-45985909 None:intergenic 45.0%
!! AGAGTCCCATGAGTTGATTG+TGG + chr4_2:45986217-45986236 Msa0602390:intron 45.0%
GATAGCAAGGACCATGAGAT+TGG - chr4_2:45986546-45986565 None:intergenic 45.0%
!!! GACGGAGGGAGTATTAGTTT+TGG - chr4_2:45986881-45986900 None:intergenic 45.0%
GCCAAGGGGTCAATTAATTC+GGG + chr4_2:45987046-45987065 Msa0602390:intron 45.0%
TCCCGAATTAATTGACCCCT+TGG - chr4_2:45987050-45987069 None:intergenic 45.0%
AGGGGTCAATTAATTCGGGA+CGG + chr4_2:45987050-45987069 Msa0602390:intron 45.0%
GTCAATTAATTCGGGACGGA+GGG + chr4_2:45987054-45987073 Msa0602390:intron 45.0%
!!! TGGTGCTCTGATTCGGTTTT+TGG + chr4_2:45987904-45987923 Msa0602390:intron 45.0%
!!! TTCGGTTTTTGGCGTTGAGT+TGG + chr4_2:45987915-45987934 Msa0602390:intron 45.0%
ACACAGCAACACATCCAAAC+CGG - chr4_2:45987959-45987978 None:intergenic 45.0%
! GTTGGTGAATTCGGATTTGG+TGG + chr4_2:45988004-45988023 Msa0602390:intron 45.0%
!!! GAGTTTGTGCCTGCTGATTT+TGG + chr4_2:45988072-45988091 Msa0602390:intron 45.0%
! CCATTGTGCTACCTTTTCCT+AGG - chr4_2:45988767-45988786 None:intergenic 45.0%
CCTAGGAAAAGGTAGCACAA+TGG + chr4_2:45988764-45988783 Msa0602390:intron 45.0%
AAGGTAGCACAATGGGATCA+TGG + chr4_2:45988772-45988791 Msa0602390:three_prime_UTR 45.0%
AGGTAGCACAATGGGATCAT+GGG + chr4_2:45988773-45988792 Msa0602390:three_prime_UTR 45.0%
TAGGCTATAGATACTGCAGC+AGG + chr4_2:45989034-45989053 Msa0602390:three_prime_UTR 45.0%
GGTCATTCAGAATGGGGAAA+TGG - chr4_2:45989094-45989113 None:intergenic 45.0%
!!! AATTAATTTAATTTACAAAA+TGG - chr4_2:45983777-45983796 None:intergenic 5.0%
!!! TAATTTATGTTTTTTTTTTA+TGG + chr4_2:45984003-45984022 Msa0602390:three_prime_UTR 5.0%
!!! TTTTGTTTAAAAAAATTTTT+TGG - chr4_2:45987747-45987766 None:intergenic 5.0%
CCCTTACCTTGGAAGGATCA+AGG + chr4_2:45982545-45982564 Msa0602390:CDS 50.0%
TGGTCTCCTTGATCCTTCCA+AGG - chr4_2:45982554-45982573 None:intergenic 50.0%
AGCAACCATGTCTGAGCCAA+AGG - chr4_2:45982602-45982621 None:intergenic 50.0%
AACTAATACTCCCTCCGTCC+CGG + chr4_2:45986882-45986901 Msa0602390:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr4_2:45986899-45986918 None:intergenic 50.0%
GGTCAATTAATTCGGGACGG+AGG + chr4_2:45987053-45987072 Msa0602390:intron 50.0%
TGGGCCACAGAGATTGAATC+TGG + chr4_2:45987388-45987407 Msa0602390:intron 50.0%
GGGCCACAGAGATTGAATCT+GGG + chr4_2:45987389-45987408 Msa0602390:intron 50.0%
TGGCCCAGATTCAATCTCTG+TGG - chr4_2:45987395-45987414 None:intergenic 50.0%
AACGACCCTGATCTGATCAC+CGG + chr4_2:45987426-45987445 Msa0602390:intron 50.0%
ATCACCCGGTGATCAGATCA+GGG - chr4_2:45987434-45987453 None:intergenic 50.0%
ACGGCTATCATCACATCACC+CGG - chr4_2:45987448-45987467 None:intergenic 50.0%
ATCAGACGACCTGGATCTGA+GGG + chr4_2:45987478-45987497 Msa0602390:intron 50.0%
AGGGTGCACAGCAATAGCTT+AGG + chr4_2:45987497-45987516 Msa0602390:intron 50.0%
AATAGCTTAGGCATACCGCG+TGG + chr4_2:45987509-45987528 Msa0602390:intron 50.0%
ATACCGCGTGGAATCAGAGA+GGG + chr4_2:45987521-45987540 Msa0602390:intron 50.0%
AGGCTAGAAACGGGAAGAGA+AGG - chr4_2:45987795-45987814 None:intergenic 50.0%
! CTGCTCCTTTGGCTCAGACA+TGG + chr4_2:45982594-45982613 Msa0602390:CDS 55.0%
! TTGCTGGCGGGGTTGCTTTA+AGG + chr4_2:45984156-45984175 Msa0602390:three_prime_UTR 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr4_2:45986895-45986914 None:intergenic 55.0%
TAATTCGGGACGGAGGGAGT+AGG + chr4_2:45987060-45987079 Msa0602390:intron 55.0%
ACGACCCTGATCTGATCACC+GGG + chr4_2:45987427-45987446 Msa0602390:intron 55.0%
CATCACCCGGTGATCAGATC+AGG - chr4_2:45987435-45987454 None:intergenic 55.0%
GATCAGACGACCTGGATCTG+AGG + chr4_2:45987477-45987496 Msa0602390:intron 55.0%
CATACCGCGTGGAATCAGAG+AGG + chr4_2:45987520-45987539 Msa0602390:intron 55.0%
TACCGCGTGGAATCAGAGAG+GGG + chr4_2:45987522-45987541 Msa0602390:intron 55.0%
TACCCCTCTCTGATTCCACG+CGG - chr4_2:45987527-45987546 None:intergenic 55.0%
AGAAGACGGAAAGGGGAGAG+GGG - chr4_2:45987639-45987658 None:intergenic 55.0%
GAGAAGACGGAAAGGGGAGA+GGG - chr4_2:45987640-45987659 None:intergenic 55.0%
TCTCCCCTTTCCGTCTTCTC+CGG + chr4_2:45987640-45987659 Msa0602390:intron 55.0%
ACCACCGGAGAAGACGGAAA+GGG - chr4_2:45987647-45987666 None:intergenic 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr4_2:45986896-45986915 None:intergenic 60.0%
TGCTGTGCACCCTCAGATCC+AGG - chr4_2:45987490-45987509 None:intergenic 60.0%
GGAGAAGACGGAAAGGGGAG+AGG - chr4_2:45987641-45987660 None:intergenic 60.0%
CCACCGGAGAAGACGGAAAG+GGG - chr4_2:45987646-45987665 None:intergenic 60.0%
CACCACCGGAGAAGACGGAA+AGG - chr4_2:45987648-45987667 None:intergenic 60.0%
GTCGTAAGCTGTTCCGGCAG+CGG - chr4_2:45987689-45987708 None:intergenic 60.0%
TGCCGGAACAGCTTACGACG+CGG + chr4_2:45987690-45987709 Msa0602390:intron 60.0%
CACCGCGTCGTAAGCTGTTC+CGG - chr4_2:45987695-45987714 None:intergenic 60.0%
ACAGCTTACGACGCGGTGGT+TGG + chr4_2:45987697-45987716 Msa0602390:intron 60.0%
CGGAAAGGGGAGAGGGGAGA+GGG - chr4_2:45987633-45987652 None:intergenic 65.0%
ACGGAAAGGGGAGAGGGGAG+AGG - chr4_2:45987634-45987653 None:intergenic 65.0%
CCCCTTTCCGTCTTCTCCGG+TGG + chr4_2:45987643-45987662 Msa0602390:intron 65.0%
CGGGACACCACCGGAGAAGA+CGG - chr4_2:45987653-45987672 None:intergenic 65.0%
CGTCTTCTCCGGTGGTGTCC+CGG + chr4_2:45987651-45987670 Msa0602390:intron 65.0%
CGGAACAGCTTACGACGCGG+TGG + chr4_2:45987693-45987712 Msa0602390:intron 65.0%
TTCTCCGGTGGTGTCCCGGC+TGG + chr4_2:45987655-45987674 Msa0602390:intron 70.0%
! ACGCGGTGGTTGGCCGTCCA+AGG + chr4_2:45987707-45987726 Msa0602390:intron 70.0%
! CGGTGGTTGGCCGTCCAAGG+TGG + chr4_2:45987710-45987729 Msa0602390:intron 70.0%
TCCGGTGGTGTCCCGGCTGG+TGG + chr4_2:45987658-45987677 Msa0602390:intron 75.0%
GCCACCAGCCGGGACACCAC+CGG - chr4_2:45987662-45987681 None:intergenic 75.0%
GGTGGTGTCCCGGCTGGTGG+CGG + chr4_2:45987661-45987680 Msa0602390:intron 75.0%
CAGCGGTTCCGCCACCAGCC+GGG - chr4_2:45987672-45987691 None:intergenic 75.0%
GCAGCGGTTCCGCCACCAGC+CGG - chr4_2:45987673-45987692 None:intergenic 75.0%
!! GCTGGTGGCGGAACCGCTGC+CGG + chr4_2:45987673-45987692 Msa0602390:intron 75.0%
GGCGGCGACGCCACCTTGGA+CGG - chr4_2:45987723-45987742 None:intergenic 75.0%
! TGGCGGCGGCGACGCCACCT+TGG - chr4_2:45987727-45987746 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 45982475 45989119 45982475 ID=Msa0602390;Name=Msa0602390
chr4_2 mRNA 45982475 45989119 45982475 ID=Msa0602390-mRNA-1;Parent=Msa0602390;Name=Msa0602390-mRNA-1;_AED=0.08;_eAED=0.17;_QI=0|0.66|0.71|1|0.66|0.42|7|1692|85
chr4_2 exon 45982475 45982656 45982475 ID=Msa0602390-mRNA-1:exon:10368;Parent=Msa0602390-mRNA-1
chr4_2 exon 45983255 45983303 45983255 ID=Msa0602390-mRNA-1:exon:10369;Parent=Msa0602390-mRNA-1
chr4_2 exon 45983412 45983463 45983412 ID=Msa0602390-mRNA-1:exon:10370;Parent=Msa0602390-mRNA-1
chr4_2 exon 45983871 45985023 45983871 ID=Msa0602390-mRNA-1:exon:10371;Parent=Msa0602390-mRNA-1
chr4_2 exon 45985812 45985918 45985812 ID=Msa0602390-mRNA-1:exon:10372;Parent=Msa0602390-mRNA-1
chr4_2 exon 45988165 45988220 45988165 ID=Msa0602390-mRNA-1:exon:10373;Parent=Msa0602390-mRNA-1
chr4_2 exon 45988769 45989119 45988769 ID=Msa0602390-mRNA-1:exon:10374;Parent=Msa0602390-mRNA-1
chr4_2 CDS 45982475 45982656 45982475 ID=Msa0602390-mRNA-1:cds;Parent=Msa0602390-mRNA-1
chr4_2 CDS 45983255 45983303 45983255 ID=Msa0602390-mRNA-1:cds;Parent=Msa0602390-mRNA-1
chr4_2 CDS 45983412 45983438 45983412 ID=Msa0602390-mRNA-1:cds;Parent=Msa0602390-mRNA-1
chr4_2 three_prime_UTR 45983439 45983463 45983439 ID=Msa0602390-mRNA-1:three_prime_utr;Parent=Msa0602390-mRNA-1
chr4_2 three_prime_UTR 45983871 45985023 45983871 ID=Msa0602390-mRNA-1:three_prime_utr;Parent=Msa0602390-mRNA-1
chr4_2 three_prime_UTR 45985812 45985918 45985812 ID=Msa0602390-mRNA-1:three_prime_utr;Parent=Msa0602390-mRNA-1
chr4_2 three_prime_UTR 45988165 45988220 45988165 ID=Msa0602390-mRNA-1:three_prime_utr;Parent=Msa0602390-mRNA-1
chr4_2 three_prime_UTR 45988769 45989119 45988769 ID=Msa0602390-mRNA-1:three_prime_utr;Parent=Msa0602390-mRNA-1
Gene Sequence

>Msa0602390

ATGGGTGTTCTCCTTGAAACTTCCTCCATCTGTTCGAGATCACATATGTATAACCTGTATCTCTCAGTTACCCTTACCTTGGAAGGATCAAGGAGACCAGAGATCCAGATGTTTCGAATCTGCTCCTTTGGCTCAGACATGGTTGCTGCTGCTGCCGTGTCGTTTCTTCAACTTCTTCTACGATTTGGGTACTATGCAAAGGTTATGTTGCTGGAAGTATTCATGATGACTGTAGATCTTGCTGCACTACTCCATTAA

Protein sequence

>Msa0602390

MGVLLETSSICSRSHMYNLYLSVTLTLEGSRRPEIQMFRICSFGSDMVAAAAVSFLQLLLRFGYYAKVMLLEVFMMTVDLAALLH*