AlfalfaGEDB | Msa1288550

M. sativa cultivar zhongmu-4 / Msa1288550

KEGG: K00975
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071704
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288550	sp\|P52416\|GLGS1_VICFA	92.308	91	7	0	1	91	380	470	1.26e-50	171

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288550	A0A2Z6NNT9	93.407	91	6	0	1	91	305	395	2.35e-49	172

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa1288550	0.800080	1.704329e-48	-8.615850e-47
Msa0019150	Msa1288550	0.805668	1.194754e-49	-8.615850e-47
Msa0100090	Msa1288550	0.805958	1.037970e-49	-8.615850e-47
Msa0610430	Msa1288550	0.810331	1.215425e-50	-8.615850e-47
Msa0672370	Msa1288550	0.903251	4.208934e-79	-8.615850e-47
Msa0698400	Msa1288550	0.809675	1.682928e-50	-8.615850e-47
Msa0751850	Msa1288550	0.807903	4.025828e-50	-8.615850e-47
Msa0766630	Msa1288550	0.805765	1.139554e-49	-8.615850e-47
Msa0806090	Msa1288550	0.801040	1.086071e-48	-8.615850e-47
Msa0820850	Msa1288550	0.800103	1.686400e-48	-8.615850e-47
Msa0211110	Msa1288550	0.821476	3.957828e-53	-8.615850e-47
Msa0229990	Msa1288550	0.825036	5.835973e-54	-8.615850e-47
Msa1247750	Msa1288550	0.843805	1.117665e-58	-8.615850e-47
Msa1252370	Msa1288550	0.905046	6.487225e-80	-8.615850e-47
Msa1288530	Msa1288550	0.816647	4.965529e-52	-8.615850e-47
Msa1288550	Msa1356370	0.945574	2.366150e-104	-8.615850e-47
Msa1288550	Msa1384330	0.824266	8.857904e-54	-8.615850e-47
Msa1288550	Msa1419960	0.800875	1.173778e-48	-8.615850e-47
Msa1288550	Msa1464900	0.804832	1.787419e-49	-8.615850e-47
Msa0388850	Msa1288550	0.909359	6.213825e-82	-8.615850e-47
Msa0389320	Msa1288550	0.830539	2.773652e-55	-8.615850e-47
Msa0267150	Msa1288550	0.857002	2.195529e-62	-8.615850e-47
Msa0273100	Msa1288550	0.805530	1.276709e-49	-8.615850e-47
Msa0281030	Msa1288550	0.912898	1.148804e-83	-8.615850e-47
Msa1179770	Msa1288550	0.819489	1.130689e-52	-8.615850e-47
Msa0545120	Msa1288550	0.800123	1.670788e-48	-8.615850e-47
Msa0555720	Msa1288550	0.816938	4.270994e-52	-8.615850e-47
Msa0558690	Msa1288550	0.812785	3.560345e-51	-8.615850e-47
Msa0850450	Msa1288550	0.801364	9.325517e-49	-8.615850e-47
Msa0895120	Msa1288550	0.808954	2.402171e-50	-8.615850e-47
Msa0900770	Msa1288550	0.804540	2.056845e-49	-8.615850e-47
Msa0925290	Msa1288550	0.800708	1.269845e-48	-8.615850e-47
Msa0927290	Msa1288550	0.803795	2.938826e-49	-8.615850e-47
Msa0927380	Msa1288550	0.806865	6.685064e-50	-8.615850e-47
Msa0973600	Msa1288550	0.808984	2.367438e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288550	MtrunA17_Chr5g0447341	94.505	91	5	0	1	91	387	477	6.76e-53	174
Msa1288550	MtrunA17_Chr3g0120471	82.418	91	13	1	1	91	386	473	3.06e-44	151
Msa1288550	MtrunA17_Chr3g0144731	48.235	85	44	0	6	90	38	122	2.49e-25	94.4
Msa1288550	MtrunA17_Chr7g0271011	47.674	86	45	0	5	90	412	497	7.77e-25	98.6
Msa1288550	MtrunA17_Chr3g0141761	45.238	84	46	0	6	89	407	490	3.96e-23	93.6
Msa1288550	MtrunA17_Chr4g0074531	50.000	88	44	0	3	90	395	482	1.94e-22	91.7
Msa1288550	MtrunA17_Chr4g0035171	45.882	85	46	0	6	90	405	489	3.93e-22	90.9
Msa1288550	MtrunA17_Chr6g0454161	74.545	55	14	0	33	87	121	175	2.97e-21	87.4
Msa1288550	MtrunA17_Chr4g0077071	92.500	40	3	0	1	40	42	81	1.20e-19	77.4
Msa1288550	MtrunA17_Chr4g0033371	91.176	34	3	0	92	125	421	454	2.70e-15	71.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288550	AT5G48300.1	82.418	91	16	0	1	91	392	482	1.92e-47	160
Msa1288550	AT1G27680.1	46.739	92	48	1	6	96	395	486	2.78e-25	100
Msa1288550	AT5G19220.1	46.591	88	47	0	3	90	396	483	7.73e-23	93.2
Msa1288550	AT2G21590.2	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.3	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.5	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.4	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.7	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.1	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT2G21590.6	43.529	85	48	0	6	90	400	484	1.35e-21	89.7
Msa1288550	AT4G39210.2	45.882	85	46	0	6	90	398	482	1.97e-20	86.3
Msa1288550	AT4G39210.1	45.882	85	46	0	6	90	398	482	1.97e-20	86.3
Msa1288550	AT1G05610.2	48.315	89	44	1	4	90	355	443	1.08e-18	81.3
Msa1288550	AT1G05610.1	48.315	89	44	1	4	90	349	437	1.22e-18	81.3

Find 41 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTAATTTGTCTTCAAATT+TGG	0.102206	8_3:+41544128	Msa1288550:three_prime_UTR
GTACAGTTTGAGAGTGTAAA+TGG	0.292311	8_3:+41543966	Msa1288550:three_prime_UTR
GGGCTGCATTCTTGCATATC+AGG	0.296848	8_3:+41542529	Msa1288550:CDS
CGGGGAAGGATGTGTGATTA+AGG	0.317043	8_3:+41542362	Msa1288550:CDS
GATGAACTCTTCACATTTGA+AGG	0.374057	8_3:-41543470	None:intergenic
GACAAGAGGAGATTGGAAAA+TGG	0.375067	8_3:+41543718	Msa1288550:three_prime_UTR
GATATCACTGATAGTGTTAT+CGG	0.379793	8_3:+41542342	Msa1288550:CDS
GGCAGTGTTCCACTTGGTAT+TGG	0.399314	8_3:+41542807	Msa1288550:CDS
TATTGAAGACACTTTGTTGA+TGG	0.401901	8_3:+41542561	Msa1288550:CDS
GTTGACAAGAATGCTAGAAT+TGG	0.404186	8_3:+41542858	Msa1288550:CDS
AAATCTTCCATTCAGTGGTT+GGG	0.441064	8_3:+41542509	Msa1288550:CDS
TTATCCAAGTCGACATCGTT+GGG	0.457199	8_3:-41543549	None:intergenic
TGATGAAGACAAGAGGAGAT+TGG	0.460581	8_3:+41543711	Msa1288550:three_prime_UTR
CTGAATTTCAAATTGCATGT+GGG	0.467504	8_3:+41543837	Msa1288550:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG	0.467770	8_3:+41543551	Msa1288550:CDS
ATATCACTGATAGTGTTATC+GGG	0.469841	8_3:+41542343	Msa1288550:CDS
AAAATCTTCCATTCAGTGGT+TGG	0.473513	8_3:+41542508	Msa1288550:CDS
AGTGTTCACATGAGAAGGCT+TGG	0.497606	8_3:+41543499	Msa1288550:CDS
CATTCCCAACGATGTCGACT+TGG	0.506190	8_3:+41543545	Msa1288550:CDS
GCATGCTGCTGAATAATTAG+TGG	0.510173	8_3:-41543913	None:intergenic
ATTGAAGACACTTTGTTGAT+GGG	0.519372	8_3:+41542562	Msa1288550:CDS
AATGCAGCCCAACCACTGAA+TGG	0.520984	8_3:-41542516	None:intergenic
CTTATCCAAGTCGACATCGT+TGG	0.524700	8_3:-41543550	None:intergenic
AATGTTTAAAGACAAATCTA+CGG	0.528586	8_3:+41543787	Msa1288550:three_prime_UTR
CAATGAGTGTTCACATGAGA+AGG	0.534579	8_3:+41543494	Msa1288550:CDS
ACTGAATTTCAAATTGCATG+TGG	0.539019	8_3:+41543836	Msa1288550:three_prime_UTR
TATGATATGTACTCAGAACT+TGG	0.552496	8_3:-41543868	None:intergenic
CTGCAAAATCTTCCATTCAG+TGG	0.561130	8_3:+41542504	Msa1288550:CDS
TGAATTTCAAATTGCATGTG+GGG	0.562677	8_3:+41543838	Msa1288550:three_prime_UTR
CCTCACACTTTCTTCAGATG+AGG	0.567909	8_3:-41543998	None:intergenic
CTGCATTCTTGCATATCAGG+AGG	0.573281	8_3:+41542532	Msa1288550:CDS
ACTGATAGTGTTATCGGGGA+AGG	0.575346	8_3:+41542348	Msa1288550:CDS
ATGTTTAAAGACAAATCTAC+GGG	0.579761	8_3:+41543788	Msa1288550:three_prime_UTR
GCTAAAGGCAGTGTTCCACT+TGG	0.607159	8_3:+41542801	Msa1288550:CDS
AAGGCAATGATGAAGACAAG+AGG	0.640920	8_3:+41543704	Msa1288550:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG	0.647495	8_3:+41542872	Msa1288550:CDS
GAATTTCAAATTGCATGTGG+GGG	0.666111	8_3:+41543839	Msa1288550:three_prime_UTR
TATCACTGATAGTGTTATCG+GGG	0.674328	8_3:+41542344	Msa1288550:CDS
GAGTTTCTGCCAATACCAAG+TGG	0.682922	8_3:-41542816	None:intergenic
GATGGGCGCATATTATTACG+AGG	0.683765	8_3:+41542579	Msa1288550:CDS
CCTCATCTGAAGAAAGTGTG+AGG	0.684673	8_3:+41543998	Msa1288550:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATAAGTTTTATATTTGTTT+TGG	-	chr8_3:41543326-41543345	None:intergenic	10.0%
!!!	AATAAGTTTTATATTTGTTT+TGG	-	chr8_3:41543326-41543345	None:intergenic	10.0%
!!	TATAATGAAAAAAATGAACT+TGG	+	chr8_3:41543405-41543424	Msa1288550:intron	15.0%
!!!	ATCTAATATTGTTTTGTTAA+AGG	+	chr8_3:41543655-41543674	Msa1288550:intron	15.0%
!!!	AATTAATTTGTCTTCAAATT+TGG	+	chr8_3:41544128-41544147	Msa1288550:three_prime_UTR	15.0%
!!	TATAATGAAAAAAATGAACT+TGG	+	chr8_3:41543405-41543424	Msa1288550:intron	15.0%
!!!	ATCTAATATTGTTTTGTTAA+AGG	+	chr8_3:41543655-41543674	Msa1288550:intron	15.0%
!!!	AATTAATTTGTCTTCAAATT+TGG	+	chr8_3:41544128-41544147	Msa1288550:three_prime_UTR	15.0%
!!!	ATGGATTAGAAAGTAAAATA+GGG	-	chr8_3:41542931-41542950	None:intergenic	20.0%
!!!	ATATTTGTTTTGGATAATGA+TGG	-	chr8_3:41543316-41543335	None:intergenic	20.0%
!!!	AATATTGTTTTGTTAAAGGA+TGG	+	chr8_3:41543659-41543678	Msa1288550:intron	20.0%
!!	AATGTTTAAAGACAAATCTA+CGG	+	chr8_3:41543787-41543806	Msa1288550:three_prime_UTR	20.0%
!!!	ATGGATTAGAAAGTAAAATA+GGG	-	chr8_3:41542931-41542950	None:intergenic	20.0%
!!!	ATATTTGTTTTGGATAATGA+TGG	-	chr8_3:41543316-41543335	None:intergenic	20.0%
!!!	AATATTGTTTTGTTAAAGGA+TGG	+	chr8_3:41543659-41543678	Msa1288550:intron	20.0%
!!	AATGTTTAAAGACAAATCTA+CGG	+	chr8_3:41543787-41543806	Msa1288550:three_prime_UTR	20.0%
!!!	AGAAGCTGATAAAAGTTTTT+TGG	+	chr8_3:41542776-41542795	Msa1288550:CDS	25.0%
!!!	GATGGATTAGAAAGTAAAAT+AGG	-	chr8_3:41542932-41542951	None:intergenic	25.0%
!	TATTAAGCTTGACAAATTGT+TGG	+	chr8_3:41542958-41542977	Msa1288550:intron	25.0%
!	ACTTAAAAAGACCAAAGATT+AGG	-	chr8_3:41543012-41543031	None:intergenic	25.0%
!	ACACCTTCAATAAAAAATGT+CGG	-	chr8_3:41543137-41543156	None:intergenic	25.0%
!	TTGTTAAAGCTATCTAAATC+TGG	-	chr8_3:41543350-41543369	None:intergenic	25.0%
!!!	AGTAAGTTTTGAGGAATTTA+AGG	+	chr8_3:41543685-41543704	Msa1288550:exon	25.0%
!	ATGTTTAAAGACAAATCTAC+GGG	+	chr8_3:41543788-41543807	Msa1288550:three_prime_UTR	25.0%
!!!	AGAAGCTGATAAAAGTTTTT+TGG	+	chr8_3:41542776-41542795	Msa1288550:CDS	25.0%
!!!	GATGGATTAGAAAGTAAAAT+AGG	-	chr8_3:41542932-41542951	None:intergenic	25.0%
!	TATTAAGCTTGACAAATTGT+TGG	+	chr8_3:41542958-41542977	Msa1288550:intron	25.0%
!	ACTTAAAAAGACCAAAGATT+AGG	-	chr8_3:41543012-41543031	None:intergenic	25.0%
!	ACACCTTCAATAAAAAATGT+CGG	-	chr8_3:41543137-41543156	None:intergenic	25.0%
!	TTGTTAAAGCTATCTAAATC+TGG	-	chr8_3:41543350-41543369	None:intergenic	25.0%
!!!	AGTAAGTTTTGAGGAATTTA+AGG	+	chr8_3:41543685-41543704	Msa1288550:exon	25.0%
!	ATGTTTAAAGACAAATCTAC+GGG	+	chr8_3:41543788-41543807	Msa1288550:three_prime_UTR	25.0%
!	GATATCACTGATAGTGTTAT+CGG	+	chr8_3:41542342-41542361	Msa1288550:CDS	30.0%
!	ATATCACTGATAGTGTTATC+GGG	+	chr8_3:41542343-41542362	Msa1288550:CDS	30.0%
	TATTGAAGACACTTTGTTGA+TGG	+	chr8_3:41542561-41542580	Msa1288550:CDS	30.0%
	ATTGAAGACACTTTGTTGAT+GGG	+	chr8_3:41542562-41542581	Msa1288550:CDS	30.0%
	AGAAAATCAATGTTGCAGTT+AGG	-	chr8_3:41542745-41542764	None:intergenic	30.0%
!!!	AAAAGTTTTTTGGCTGCTAA+AGG	+	chr8_3:41542786-41542805	Msa1288550:CDS	30.0%
!	AACAATTGCTCTTTTGATAC+GGG	-	chr8_3:41542841-41542860	None:intergenic	30.0%
!	CAACAATTGCTCTTTTGATA+CGG	-	chr8_3:41542842-41542861	None:intergenic	30.0%
	TAGAATTGGAGAAAATGTGA+AGG	+	chr8_3:41542872-41542891	Msa1288550:CDS	30.0%
!	GGAATGAAAGTGTATATAGT+TGG	-	chr8_3:41542910-41542929	None:intergenic	30.0%
	TCAAGCTTAATATGAGAAGA+TGG	-	chr8_3:41542950-41542969	None:intergenic	30.0%
!!!	TTTTTTATTGAAGGTGTGTC+TGG	+	chr8_3:41543140-41543159	Msa1288550:intron	30.0%
	TCGCAGTTTATTATTAGTGT+TGG	+	chr8_3:41543207-41543226	Msa1288550:intron	30.0%
	GAAGGAAATCAGGTTATATT+CGG	-	chr8_3:41543271-41543290	None:intergenic	30.0%
	TATAACCTGATTTCCTTCAT+AGG	+	chr8_3:41543273-41543292	Msa1288550:intron	30.0%
!	GGTTATTAATTGATGACAAC+AGG	+	chr8_3:41543426-41543445	Msa1288550:intron	30.0%
	ACTGAATTTCAAATTGCATG+TGG	+	chr8_3:41543836-41543855	Msa1288550:three_prime_UTR	30.0%
	CTGAATTTCAAATTGCATGT+GGG	+	chr8_3:41543837-41543856	Msa1288550:three_prime_UTR	30.0%
	TGAATTTCAAATTGCATGTG+GGG	+	chr8_3:41543838-41543857	Msa1288550:three_prime_UTR	30.0%
	TATGATATGTACTCAGAACT+TGG	-	chr8_3:41543871-41543890	None:intergenic	30.0%
!	GAGAGTGTAAATGGAAAAAT+AGG	+	chr8_3:41543975-41543994	Msa1288550:three_prime_UTR	30.0%
!	GATATCACTGATAGTGTTAT+CGG	+	chr8_3:41542342-41542361	Msa1288550:CDS	30.0%
!	ATATCACTGATAGTGTTATC+GGG	+	chr8_3:41542343-41542362	Msa1288550:CDS	30.0%
	TATTGAAGACACTTTGTTGA+TGG	+	chr8_3:41542561-41542580	Msa1288550:CDS	30.0%
	ATTGAAGACACTTTGTTGAT+GGG	+	chr8_3:41542562-41542581	Msa1288550:CDS	30.0%
	AGAAAATCAATGTTGCAGTT+AGG	-	chr8_3:41542745-41542764	None:intergenic	30.0%
!!!	AAAAGTTTTTTGGCTGCTAA+AGG	+	chr8_3:41542786-41542805	Msa1288550:CDS	30.0%
!	AACAATTGCTCTTTTGATAC+GGG	-	chr8_3:41542841-41542860	None:intergenic	30.0%
!	CAACAATTGCTCTTTTGATA+CGG	-	chr8_3:41542842-41542861	None:intergenic	30.0%
	TAGAATTGGAGAAAATGTGA+AGG	+	chr8_3:41542872-41542891	Msa1288550:CDS	30.0%
!	GGAATGAAAGTGTATATAGT+TGG	-	chr8_3:41542910-41542929	None:intergenic	30.0%
	TCAAGCTTAATATGAGAAGA+TGG	-	chr8_3:41542950-41542969	None:intergenic	30.0%
!!!	TTTTTTATTGAAGGTGTGTC+TGG	+	chr8_3:41543140-41543159	Msa1288550:intron	30.0%
	TCGCAGTTTATTATTAGTGT+TGG	+	chr8_3:41543207-41543226	Msa1288550:intron	30.0%
	GAAGGAAATCAGGTTATATT+CGG	-	chr8_3:41543271-41543290	None:intergenic	30.0%
	TATAACCTGATTTCCTTCAT+AGG	+	chr8_3:41543273-41543292	Msa1288550:intron	30.0%
!	GGTTATTAATTGATGACAAC+AGG	+	chr8_3:41543426-41543445	Msa1288550:intron	30.0%
	ACTGAATTTCAAATTGCATG+TGG	+	chr8_3:41543836-41543855	Msa1288550:three_prime_UTR	30.0%
	CTGAATTTCAAATTGCATGT+GGG	+	chr8_3:41543837-41543856	Msa1288550:three_prime_UTR	30.0%
	TGAATTTCAAATTGCATGTG+GGG	+	chr8_3:41543838-41543857	Msa1288550:three_prime_UTR	30.0%
	TATGATATGTACTCAGAACT+TGG	-	chr8_3:41543871-41543890	None:intergenic	30.0%
!	GAGAGTGTAAATGGAAAAAT+AGG	+	chr8_3:41543975-41543994	Msa1288550:three_prime_UTR	30.0%
!	TATCACTGATAGTGTTATCG+GGG	+	chr8_3:41542344-41542363	Msa1288550:CDS	35.0%
!	ATGGAAGATTTTGCAGTTCT+AGG	-	chr8_3:41542500-41542519	None:intergenic	35.0%
	AAAATCTTCCATTCAGTGGT+TGG	+	chr8_3:41542508-41542527	Msa1288550:CDS	35.0%
	AAATCTTCCATTCAGTGGTT+GGG	+	chr8_3:41542509-41542528	Msa1288550:CDS	35.0%
	ATGCAGCTCAATTCATTCAT+TGG	+	chr8_3:41542694-41542713	Msa1288550:intron	35.0%
!!	ATTGGCTTGTGTAAGTTACA+AGG	+	chr8_3:41542712-41542731	Msa1288550:intron	35.0%
	GTTGACAAGAATGCTAGAAT+TGG	+	chr8_3:41542858-41542877	Msa1288550:CDS	35.0%
	AAACATAGATTGCCTTCTTG+CGG	+	chr8_3:41543063-41543082	Msa1288550:intron	35.0%
!!!	GCACCGACATTTTTTATTGA+AGG	+	chr8_3:41543131-41543150	Msa1288550:intron	35.0%
	TTTCCTTCATAGGAAAGCTT+TGG	+	chr8_3:41543283-41543302	Msa1288550:intron	35.0%
	GATGAACTCTTCACATTTGA+AGG	-	chr8_3:41543473-41543492	None:intergenic	35.0%
	GAATTTCAAATTGCATGTGG+GGG	+	chr8_3:41543839-41543858	Msa1288550:three_prime_UTR	35.0%
!	GTACAGTTTGAGAGTGTAAA+TGG	+	chr8_3:41543966-41543985	Msa1288550:three_prime_UTR	35.0%
!	TATCACTGATAGTGTTATCG+GGG	+	chr8_3:41542344-41542363	Msa1288550:CDS	35.0%
!	ATGGAAGATTTTGCAGTTCT+AGG	-	chr8_3:41542500-41542519	None:intergenic	35.0%
	AAAATCTTCCATTCAGTGGT+TGG	+	chr8_3:41542508-41542527	Msa1288550:CDS	35.0%
	AAATCTTCCATTCAGTGGTT+GGG	+	chr8_3:41542509-41542528	Msa1288550:CDS	35.0%
	ATGCAGCTCAATTCATTCAT+TGG	+	chr8_3:41542694-41542713	Msa1288550:intron	35.0%
!!	ATTGGCTTGTGTAAGTTACA+AGG	+	chr8_3:41542712-41542731	Msa1288550:intron	35.0%
	GTTGACAAGAATGCTAGAAT+TGG	+	chr8_3:41542858-41542877	Msa1288550:CDS	35.0%
	AAACATAGATTGCCTTCTTG+CGG	+	chr8_3:41543063-41543082	Msa1288550:intron	35.0%
!!!	GCACCGACATTTTTTATTGA+AGG	+	chr8_3:41543131-41543150	Msa1288550:intron	35.0%
	TTTCCTTCATAGGAAAGCTT+TGG	+	chr8_3:41543283-41543302	Msa1288550:intron	35.0%
	GATGAACTCTTCACATTTGA+AGG	-	chr8_3:41543473-41543492	None:intergenic	35.0%
	GAATTTCAAATTGCATGTGG+GGG	+	chr8_3:41543839-41543858	Msa1288550:three_prime_UTR	35.0%
!	GTACAGTTTGAGAGTGTAAA+TGG	+	chr8_3:41543966-41543985	Msa1288550:three_prime_UTR	35.0%
	CTGCAAAATCTTCCATTCAG+TGG	+	chr8_3:41542504-41542523	Msa1288550:CDS	40.0%
	GACCAAAGATTAGGAACAGA+GGG	-	chr8_3:41543003-41543022	None:intergenic	40.0%
	AGACCAAAGATTAGGAACAG+AGG	-	chr8_3:41543004-41543023	None:intergenic	40.0%
	GCTTTCCTATGAAGGAAATC+AGG	-	chr8_3:41543281-41543300	None:intergenic	40.0%
!	TGACAACAGGCAGATTTTGA+TGG	+	chr8_3:41543439-41543458	Msa1288550:intron	40.0%
!!	CAGGCAGATTTTGATGGAAA+TGG	+	chr8_3:41543445-41543464	Msa1288550:intron	40.0%
	CAATGAGTGTTCACATGAGA+AGG	+	chr8_3:41543494-41543513	Msa1288550:CDS	40.0%
	TTATCCAAGTCGACATCGTT+GGG	-	chr8_3:41543552-41543571	None:intergenic	40.0%
!!	ATGTCGACTTGGATAAGGTA+AGG	+	chr8_3:41543556-41543575	Msa1288550:intron	40.0%
	AAGGCAATGATGAAGACAAG+AGG	+	chr8_3:41543704-41543723	Msa1288550:three_prime_UTR	40.0%
	TGATGAAGACAAGAGGAGAT+TGG	+	chr8_3:41543711-41543730	Msa1288550:three_prime_UTR	40.0%
	GACAAGAGGAGATTGGAAAA+TGG	+	chr8_3:41543718-41543737	Msa1288550:three_prime_UTR	40.0%
	GCATGCTGCTGAATAATTAG+TGG	-	chr8_3:41543916-41543935	None:intergenic	40.0%
	CTGCAAAATCTTCCATTCAG+TGG	+	chr8_3:41542504-41542523	Msa1288550:CDS	40.0%
	GACCAAAGATTAGGAACAGA+GGG	-	chr8_3:41543003-41543022	None:intergenic	40.0%
	AGACCAAAGATTAGGAACAG+AGG	-	chr8_3:41543004-41543023	None:intergenic	40.0%
	GCTTTCCTATGAAGGAAATC+AGG	-	chr8_3:41543281-41543300	None:intergenic	40.0%
!	TGACAACAGGCAGATTTTGA+TGG	+	chr8_3:41543439-41543458	Msa1288550:intron	40.0%
!!	CAGGCAGATTTTGATGGAAA+TGG	+	chr8_3:41543445-41543464	Msa1288550:intron	40.0%
	CAATGAGTGTTCACATGAGA+AGG	+	chr8_3:41543494-41543513	Msa1288550:CDS	40.0%
	TTATCCAAGTCGACATCGTT+GGG	-	chr8_3:41543552-41543571	None:intergenic	40.0%
!!	ATGTCGACTTGGATAAGGTA+AGG	+	chr8_3:41543556-41543575	Msa1288550:intron	40.0%
	AAGGCAATGATGAAGACAAG+AGG	+	chr8_3:41543704-41543723	Msa1288550:three_prime_UTR	40.0%
	TGATGAAGACAAGAGGAGAT+TGG	+	chr8_3:41543711-41543730	Msa1288550:three_prime_UTR	40.0%
	GACAAGAGGAGATTGGAAAA+TGG	+	chr8_3:41543718-41543737	Msa1288550:three_prime_UTR	40.0%
	GCATGCTGCTGAATAATTAG+TGG	-	chr8_3:41543916-41543935	None:intergenic	40.0%
!	ACTGATAGTGTTATCGGGGA+AGG	+	chr8_3:41542348-41542367	Msa1288550:CDS	45.0%
	CTGCATTCTTGCATATCAGG+AGG	+	chr8_3:41542532-41542551	Msa1288550:CDS	45.0%
	GATGGGCGCATATTATTACG+AGG	+	chr8_3:41542579-41542598	Msa1288550:CDS	45.0%
	GAGTTTCTGCCAATACCAAG+TGG	-	chr8_3:41542819-41542838	None:intergenic	45.0%
	GAACAGAGGGAGTAGATGAT+GGG	-	chr8_3:41542990-41543009	None:intergenic	45.0%
	CTCCCTCTGTTCCTAATCTT+TGG	+	chr8_3:41542998-41543017	Msa1288550:intron	45.0%
	CACACATGTTGCTGTCATGT+CGG	-	chr8_3:41543169-41543188	None:intergenic	45.0%
	CAGCCAAAGCTTTCCTATGA+AGG	-	chr8_3:41543289-41543308	None:intergenic	45.0%
	AGTGTTCACATGAGAAGGCT+TGG	+	chr8_3:41543499-41543518	Msa1288550:CDS	45.0%
	CTTATCCAAGTCGACATCGT+TGG	-	chr8_3:41543553-41543572	None:intergenic	45.0%
!!	CAACGATGTCGACTTGGATA+AGG	+	chr8_3:41543551-41543570	Msa1288550:CDS	45.0%
!	GGATGGTCGAGTAAGTTTTG+AGG	+	chr8_3:41543676-41543695	Msa1288550:intron	45.0%
!	CAAATTGCATGTGGGGGTAT+AGG	+	chr8_3:41543845-41543864	Msa1288550:three_prime_UTR	45.0%
	CCTCACACTTTCTTCAGATG+AGG	-	chr8_3:41544001-41544020	None:intergenic	45.0%
!	CCTCATCTGAAGAAAGTGTG+AGG	+	chr8_3:41543998-41544017	Msa1288550:three_prime_UTR	45.0%
!	ACTGATAGTGTTATCGGGGA+AGG	+	chr8_3:41542348-41542367	Msa1288550:CDS	45.0%
	CTGCATTCTTGCATATCAGG+AGG	+	chr8_3:41542532-41542551	Msa1288550:CDS	45.0%
	GATGGGCGCATATTATTACG+AGG	+	chr8_3:41542579-41542598	Msa1288550:CDS	45.0%
	GAGTTTCTGCCAATACCAAG+TGG	-	chr8_3:41542819-41542838	None:intergenic	45.0%
	GAACAGAGGGAGTAGATGAT+GGG	-	chr8_3:41542990-41543009	None:intergenic	45.0%
	CTCCCTCTGTTCCTAATCTT+TGG	+	chr8_3:41542998-41543017	Msa1288550:intron	45.0%
	CACACATGTTGCTGTCATGT+CGG	-	chr8_3:41543169-41543188	None:intergenic	45.0%
	CAGCCAAAGCTTTCCTATGA+AGG	-	chr8_3:41543289-41543308	None:intergenic	45.0%
	AGTGTTCACATGAGAAGGCT+TGG	+	chr8_3:41543499-41543518	Msa1288550:CDS	45.0%
	CTTATCCAAGTCGACATCGT+TGG	-	chr8_3:41543553-41543572	None:intergenic	45.0%
!!	CAACGATGTCGACTTGGATA+AGG	+	chr8_3:41543551-41543570	Msa1288550:CDS	45.0%
!	GGATGGTCGAGTAAGTTTTG+AGG	+	chr8_3:41543676-41543695	Msa1288550:intron	45.0%
!	CAAATTGCATGTGGGGGTAT+AGG	+	chr8_3:41543845-41543864	Msa1288550:three_prime_UTR	45.0%
	CCTCACACTTTCTTCAGATG+AGG	-	chr8_3:41544001-41544020	None:intergenic	45.0%
!	CCTCATCTGAAGAAAGTGTG+AGG	+	chr8_3:41543998-41544017	Msa1288550:three_prime_UTR	45.0%
	CGGGGAAGGATGTGTGATTA+AGG	+	chr8_3:41542362-41542381	Msa1288550:CDS	50.0%
	AATGCAGCCCAACCACTGAA+TGG	-	chr8_3:41542519-41542538	None:intergenic	50.0%
	GGGCTGCATTCTTGCATATC+AGG	+	chr8_3:41542529-41542548	Msa1288550:CDS	50.0%
	GCTAAAGGCAGTGTTCCACT+TGG	+	chr8_3:41542801-41542820	Msa1288550:CDS	50.0%
	GGCAGTGTTCCACTTGGTAT+TGG	+	chr8_3:41542807-41542826	Msa1288550:CDS	50.0%
	GGAACAGAGGGAGTAGATGA+TGG	-	chr8_3:41542991-41543010	None:intergenic	50.0%
	TACACTACGATGCCGCAAGA+AGG	-	chr8_3:41543078-41543097	None:intergenic	50.0%
!	CATTCCCAACGATGTCGACT+TGG	+	chr8_3:41543545-41543564	Msa1288550:CDS	50.0%
	CGGGGAAGGATGTGTGATTA+AGG	+	chr8_3:41542362-41542381	Msa1288550:CDS	50.0%
	AATGCAGCCCAACCACTGAA+TGG	-	chr8_3:41542519-41542538	None:intergenic	50.0%
	GGGCTGCATTCTTGCATATC+AGG	+	chr8_3:41542529-41542548	Msa1288550:CDS	50.0%
	GCTAAAGGCAGTGTTCCACT+TGG	+	chr8_3:41542801-41542820	Msa1288550:CDS	50.0%
	GGCAGTGTTCCACTTGGTAT+TGG	+	chr8_3:41542807-41542826	Msa1288550:CDS	50.0%
	GGAACAGAGGGAGTAGATGA+TGG	-	chr8_3:41542991-41543010	None:intergenic	50.0%
	TACACTACGATGCCGCAAGA+AGG	-	chr8_3:41543078-41543097	None:intergenic	50.0%
!	CATTCCCAACGATGTCGACT+TGG	+	chr8_3:41543545-41543564	Msa1288550:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	41542330	41544174	41542330	ID=Msa1288550;Name=Msa1288550
chr8_3	mRNA	41542330	41544174	41542330	ID=Msa1288550-mRNA-1;Parent=Msa1288550;Name=Msa1288550-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.75\|0.6\|0.8\|0.75\|0.8\|5\|485\|136
chr8_3	exon	41542330	41542383	41542330	ID=Msa1288550-mRNA-1:exon:11374;Parent=Msa1288550-mRNA-1
chr8_3	exon	41542502	41542600	41542502	ID=Msa1288550-mRNA-1:exon:11375;Parent=Msa1288550-mRNA-1
chr8_3	exon	41542774	41542893	41542774	ID=Msa1288550-mRNA-1:exon:11376;Parent=Msa1288550-mRNA-1
chr8_3	exon	41543448	41543572	41543448	ID=Msa1288550-mRNA-1:exon:11377;Parent=Msa1288550-mRNA-1
chr8_3	exon	41543677	41544174	41543677	ID=Msa1288550-mRNA-1:exon:11378;Parent=Msa1288550-mRNA-1
chr8_3	CDS	41542330	41542383	41542330	ID=Msa1288550-mRNA-1:cds;Parent=Msa1288550-mRNA-1
chr8_3	CDS	41542502	41542600	41542502	ID=Msa1288550-mRNA-1:cds;Parent=Msa1288550-mRNA-1
chr8_3	CDS	41542774	41542893	41542774	ID=Msa1288550-mRNA-1:cds;Parent=Msa1288550-mRNA-1
chr8_3	CDS	41543448	41543572	41543448	ID=Msa1288550-mRNA-1:cds;Parent=Msa1288550-mRNA-1
chr8_3	CDS	41543677	41543689	41543677	ID=Msa1288550-mRNA-1:cds;Parent=Msa1288550-mRNA-1
chr8_3	three_prime_UTR	41543690	41544174	41543690	ID=Msa1288550-mRNA-1:three_prime_utr;Parent=Msa1288550-mRNA-1

Gene Sequence

>Msa1288550

ATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCATATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGGATGGTCGAGTAA

Protein sequence

>Msa1288550

MLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGAYYYETEADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWIRMVE*