AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356370 MtrunA17_Chr5g0447341 93.478 92 6 0 116 207 386 477 6.16e-52 176
Msa1356370 MtrunA17_Chr3g0120471 81.522 92 14 1 116 207 385 473 2.64e-43 153
Msa1356370 MtrunA17_Chr3g0144731 48.235 85 44 0 122 206 38 122 5.47e-24 94.4
Msa1356370 MtrunA17_Chr7g0271011 47.674 86 45 0 121 206 412 497 1.60e-23 99.0
Msa1356370 MtrunA17_Chr3g0141761 45.238 84 46 0 122 205 407 490 9.05e-22 94.0
Msa1356370 MtrunA17_Chr4g0074531 50.000 88 44 0 119 206 395 482 3.39e-21 92.0
Msa1356370 MtrunA17_Chr4g0035171 45.882 85 46 0 122 206 405 489 8.97e-21 90.9
Msa1356370 MtrunA17_Chr6g0454161 80.392 51 10 0 153 203 125 175 3.34e-20 88.2
Msa1356370 MtrunA17_Chr4g0077071 90.244 41 4 0 116 156 41 81 6.98e-20 81.3
Msa1356370 MtrunA17_Chr4g0033371 91.176 34 3 0 208 241 421 454 3.38e-14 71.6
Msa1356370 MtrunA17_Chr5g0441571 50.649 77 37 1 17 93 155 230 3.48e-13 68.6
Msa1356370 MtrunA17_Chr5g0441651 49.351 77 38 1 17 93 163 238 4.39e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356370 AT5G48300.1 81.522 92 17 0 116 207 391 482 1.46e-45 159
Msa1356370 AT1G27680.1 46.739 92 48 1 122 212 395 486 4.41e-23 98.2
Msa1356370 AT5G19220.1 46.591 88 47 0 119 206 396 483 1.19e-21 94.0
Msa1356370 AT2G21590.2 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.3 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.5 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.4 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.7 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.1 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT2G21590.6 43.529 85 48 0 122 206 400 484 3.07e-20 89.7
Msa1356370 AT4G39210.2 45.882 85 46 0 122 206 398 482 2.79e-19 87.0
Msa1356370 AT4G39210.1 45.882 85 46 0 122 206 398 482 2.79e-19 87.0
Msa1356370 AT1G05610.2 48.315 89 44 1 120 206 355 443 1.19e-17 82.0
Msa1356370 AT1G05610.1 48.315 89 44 1 120 206 349 437 1.25e-17 82.0

Find 94 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTTGTCTTCAAATT+TGG 0.102206 tig0015627:+12919 Msa1356370:three_prime_UTR
TTTAGAAGCAAAGGAAATTA+AGG 0.221632 tig0015627:+6430 Msa1356370:five_prime_UTR
AATTAAGCTTTCTTTGAATA+AGG 0.238635 tig0015627:-6575 None:intergenic
AGAAAGCTTAATTGAAAGTA+TGG 0.246651 tig0015627:+6585 Msa1356370:five_prime_UTR
GTACAGTTTGAGAGTGTAAA+TGG 0.292311 tig0015627:+12757 Msa1356370:three_prime_UTR
GGGCTGCATTCTTGCATATC+AGG 0.296848 tig0015627:+11320 Msa1356370:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 tig0015627:+11153 Msa1356370:CDS
CTCATGCTTTCTTCATCCCT+TGG 0.325599 tig0015627:-9994 None:intergenic
ATTTCCTTTGCTTCTAAAAT+CGG 0.330480 tig0015627:-6425 None:intergenic
GAGGAAGAAACAAGAAGAAT+TGG 0.332205 tig0015627:+6626 Msa1356370:five_prime_UTR
GCATGAGTGATGAAGCAATA+TGG 0.371280 tig0015627:+10010 Msa1356370:CDS
GATGAACTCTTCACATTTGA+AGG 0.374057 tig0015627:-12261 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 tig0015627:+12509 Msa1356370:three_prime_UTR
AGAAGAGAGAAGAGAGAAAA+GGG 0.376057 tig0015627:+6258 Msa1356370:five_prime_UTR
GATATCACTGATAGTGTTAT+CGG 0.379793 tig0015627:+11133 Msa1356370:CDS
ACGAAGGGACCGAGAGAAAC+AGG 0.383319 tig0015627:+6301 Msa1356370:five_prime_UTR
CGTCTATGTTTCTTAATCTC+AGG 0.392267 tig0015627:+7468 Msa1356370:CDS
TTACATAGAACATACCTTAT+GGG 0.397491 tig0015627:-6944 None:intergenic
GGCAGTGTTCCACTTGGTAT+TGG 0.399314 tig0015627:+11598 Msa1356370:CDS
TATTGAAGACACTTTGTTGA+TGG 0.401901 tig0015627:+11352 Msa1356370:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 tig0015627:+11649 Msa1356370:CDS
GAGAAGAGAGAAGAGAGAAA+AGG 0.435926 tig0015627:+6257 Msa1356370:five_prime_UTR
AAATCTTCCATTCAGTGGTT+GGG 0.441064 tig0015627:+11300 Msa1356370:CDS
AAATTGCATGTCGTTAGAAA+AGG 0.441642 tig0015627:+6232 Msa1356370:five_prime_UTR
TCTCCCGTTCCTGTTTCTCT+CGG 0.447250 tig0015627:-6310 None:intergenic
GGGGTTGGGTTTGCAATTGG+AGG 0.457079 tig0015627:+6607 Msa1356370:five_prime_UTR
TTATCCAAGTCGACATCGTT+GGG 0.457199 tig0015627:-12340 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 tig0015627:+12502 Msa1356370:three_prime_UTR
CTTTGGTTCATGCAGCTGCT+TGG 0.464450 tig0015627:+7108 Msa1356370:CDS
CTGAATTTCAAATTGCATGT+GGG 0.467504 tig0015627:+12628 Msa1356370:three_prime_UTR
CAACGATGTCGACTTGGATA+AGG 0.467770 tig0015627:+12342 Msa1356370:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 tig0015627:+11134 Msa1356370:CDS
ACAGGAACGGGAGAGGAAGA+AGG 0.470342 tig0015627:+6319 Msa1356370:five_prime_UTR
AAAATCTTCCATTCAGTGGT+TGG 0.473513 tig0015627:+11299 Msa1356370:CDS
GAAAGCTTAATTGAAAGTAT+GGG 0.474338 tig0015627:+6586 Msa1356370:five_prime_UTR
AGAGAAACGGGAGAGGAAGA+AGG 0.475515 tig0015627:+6180 Msa1356370:five_prime_UTR
TATGATAATTTCATCCCATA+AGG 0.480276 tig0015627:+6930 Msa1356370:exon
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 tig0015627:+7564 Msa1356370:CDS
AGAGAGAACGGAAGAGGAGA+GGG 0.484152 tig0015627:+6348 Msa1356370:five_prime_UTR
GAAGAAACAAGAAGAATTGG+AGG 0.484939 tig0015627:+6629 Msa1356370:five_prime_UTR
TTGGTGCCTTAGCGATGGTA+AGG 0.495404 tig0015627:+7583 Msa1356370:CDS
AGTGTTCACATGAGAAGGCT+TGG 0.497606 tig0015627:+12290 Msa1356370:CDS
GGGGACGAGAGAAACGGGAG+AGG 0.500968 tig0015627:+6173 None:intergenic
GGACCGAGAGAAACAGGAAC+GGG 0.505385 tig0015627:+6307 Msa1356370:five_prime_UTR
CATTCCCAACGATGTCGACT+TGG 0.506190 tig0015627:+12336 Msa1356370:CDS
GCGACGAGAGAGAACGGAAG+AGG 0.507684 tig0015627:+6342 Msa1356370:five_prime_UTR
GCATGCTGCTGAATAATTAG+TGG 0.510173 tig0015627:-12704 None:intergenic
GAGAGAAACAGGAACGGGAG+AGG 0.518708 tig0015627:+6312 Msa1356370:five_prime_UTR
ATTGAAGACACTTTGTTGAT+GGG 0.519372 tig0015627:+11353 Msa1356370:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 tig0015627:-11307 None:intergenic
AGAAGGGCGACGAGAGAGAA+CGG 0.522224 tig0015627:+6336 Msa1356370:five_prime_UTR
CAGGAACGGGAGAGGAAGAA+GGG 0.522491 tig0015627:+6320 Msa1356370:five_prime_UTR
AAGGGAACGAGAGAAAGAAG+AGG 0.523683 tig0015627:+6276 Msa1356370:five_prime_UTR
AAAGCTTAATTGAAAGTATG+GGG 0.524628 tig0015627:+6587 Msa1356370:five_prime_UTR
CTTATCCAAGTCGACATCGT+TGG 0.524700 tig0015627:-12341 None:intergenic
AATTGCATGTCGTTAGAAAA+GGG 0.524800 tig0015627:+6233 Msa1356370:five_prime_UTR
AATGTTTAAAGACAAATCTA+CGG 0.528586 tig0015627:+12578 Msa1356370:three_prime_UTR
GAGAAACGGGAGAGGAAGAA+GGG 0.529600 tig0015627:+6181 Msa1356370:five_prime_UTR
GAGAGAGAACGGAAGAGGAG+AGG 0.532551 tig0015627:+6347 Msa1356370:five_prime_UTR
CAATGAGTGTTCACATGAGA+AGG 0.534579 tig0015627:+12285 Msa1356370:CDS
ACTGAATTTCAAATTGCATG+TGG 0.539019 tig0015627:+12627 Msa1356370:three_prime_UTR
ATCGGTGCAGATCAGAGTGT+TGG 0.543077 tig0015627:-6407 None:intergenic
CAACATTGAAGATTATGAAG+AGG 0.549840 tig0015627:+7293 Msa1356370:CDS
TATGATATGTACTCAGAACT+TGG 0.552496 tig0015627:-12659 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.559179 tig0015627:-6391 None:intergenic
CTGCAAAATCTTCCATTCAG+TGG 0.561130 tig0015627:+11295 Msa1356370:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 tig0015627:+7578 Msa1356370:CDS
AGAGAAAGAAGAGGGAACGA+AGG 0.563011 tig0015627:+6285 Msa1356370:five_prime_UTR
TGTGTAAAGCTCTAATGCCA+AGG 0.563050 tig0015627:+9977 Msa1356370:CDS
CCTCACACTTTCTTCAGATG+AGG 0.567909 tig0015627:-12789 None:intergenic
TTATGAAGAGGATTTGAAGC+CGG 0.569826 tig0015627:+7305 Msa1356370:CDS
CTGCATTCTTGCATATCAGG+AGG 0.573281 tig0015627:+11323 Msa1356370:CDS
GAGAAAGAAGAGGGAACGAA+GGG 0.574865 tig0015627:+6286 Msa1356370:five_prime_UTR
ACTGATAGTGTTATCGGGGA+AGG 0.575346 tig0015627:+11139 Msa1356370:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 tig0015627:+12579 Msa1356370:three_prime_UTR
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 tig0015627:+7257 Msa1356370:CDS
AAACGGGAGAGGAAGAAGGG+TGG 0.593784 tig0015627:+6184 Msa1356370:five_prime_UTR
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 tig0015627:+7249 Msa1356370:CDS
AGGGAACGAGAGAAAGAAGA+GGG 0.605408 tig0015627:+6277 Msa1356370:five_prime_UTR
GCTAAAGGCAGTGTTCCACT+TGG 0.607159 tig0015627:+11592 Msa1356370:CDS
AAGCTTAATTGAAAGTATGG+GGG 0.620557 tig0015627:+6588 Msa1356370:five_prime_UTR
GTGTAAAGCTCTAATGCCAA+GGG 0.623691 tig0015627:+9978 Msa1356370:CDS
GGGACCGAGAGAAACAGGAA+CGG 0.630598 tig0015627:+6306 Msa1356370:five_prime_UTR
GATCAGAGTGTTGGACGGCG+AGG 0.636768 tig0015627:-6398 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 tig0015627:+12495 Msa1356370:three_prime_UTR
TGAATTTCAAATTGCATGTG+GGG 0.642872 tig0015627:+12629 Msa1356370:three_prime_UTR
TAGAATTGGAGAAAATGTGA+AGG 0.647495 tig0015627:+11663 Msa1356370:CDS
TTGGACGGCGAGGTCGACGG+CGG 0.673722 tig0015627:-6388 None:intergenic
TATCACTGATAGTGTTATCG+GGG 0.674328 tig0015627:+11135 Msa1356370:CDS
GTGCAGATCAGAGTGTTGGA+CGG 0.676123 tig0015627:-6403 None:intergenic
GAGTTTCTGCCAATACCAAG+TGG 0.682922 tig0015627:-11607 None:intergenic
GATGGGCGCATATTATTACG+AGG 0.683765 tig0015627:+11370 Msa1356370:CDS
CCTCATCTGAAGAAAGTGTG+AGG 0.684673 tig0015627:+12789 Msa1356370:three_prime_UTR
GAATTTCAAATTGCATGTGG+GGG 0.716284 tig0015627:+12630 Msa1356370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + tig0015627:7938-7957 Msa1356370:intron 10.0%
!!! TGGAATTTTAAAAAAATATT+TGG + tig0015627:9158-9177 Msa1356370:intron 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + tig0015627:10089-10108 Msa1356370:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - tig0015627:12117-12136 None:intergenic 10.0%
!! AAATTGAATGTATAAATTGT+AGG + tig0015627:6977-6996 Msa1356370:intron 15.0%
!! AATTGAATGTATAAATTGTA+GGG + tig0015627:6978-6997 Msa1356370:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - tig0015627:7070-7089 None:intergenic 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG + tig0015627:7071-7090 Msa1356370:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + tig0015627:7158-7177 Msa1356370:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG - tig0015627:7382-7401 None:intergenic 15.0%
!! TAAAAAATTTACACTTTAGT+AGG - tig0015627:8081-8100 None:intergenic 15.0%
!! AAAAAAATATTTGGTTGATT+TGG + tig0015627:9167-9186 Msa1356370:intron 15.0%
!! TATAATGAAAAAAATGAACT+TGG + tig0015627:12196-12215 Msa1356370:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + tig0015627:12446-12465 Msa1356370:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG + tig0015627:12919-12938 Msa1356370:three_prime_UTR 15.0%
!! TTCATTGAGAAATTGAAATT+GGG - tig0015627:6525-6544 None:intergenic 20.0%
!! AATTTCAATTTCTCAATGAA+GGG + tig0015627:6525-6544 Msa1356370:intron 20.0%
!! AATTAAGCTTTCTTTGAATA+AGG - tig0015627:6578-6597 None:intergenic 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG + tig0015627:7016-7035 Msa1356370:intron 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG + tig0015627:7072-7091 Msa1356370:intron 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - tig0015627:7406-7425 None:intergenic 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + tig0015627:7787-7806 Msa1356370:intron 20.0%
!!! AAATTTTTTAACACTGTCAT+AGG + tig0015627:8091-8110 Msa1356370:intron 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - tig0015627:8120-8139 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - tig0015627:8292-8311 None:intergenic 20.0%
!!! AAATGGTATTGATTTATTTC+TGG + tig0015627:8492-8511 Msa1356370:intron 20.0%
!!! AATGGTATTGATTTATTTCT+GGG + tig0015627:8493-8512 Msa1356370:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG + tig0015627:8678-8697 Msa1356370:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + tig0015627:8768-8787 Msa1356370:intron 20.0%
!! CGAATTTGGAAAAAAAAAAT+TGG + tig0015627:8858-8877 Msa1356370:intron 20.0%
!!! TGCTTTCTATTGATAATTTT+TGG + tig0015627:9078-9097 Msa1356370:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG + tig0015627:9085-9104 Msa1356370:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + tig0015627:9138-9157 Msa1356370:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG - tig0015627:9359-9378 None:intergenic 20.0%
!! CTTAATTCAATTATGTATGA+TGG + tig0015627:9581-9600 Msa1356370:intron 20.0%
!! AATGTTCATGTTGAAATATT+TGG + tig0015627:9662-9681 Msa1356370:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - tig0015627:10486-10505 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - tig0015627:10513-10532 None:intergenic 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + tig0015627:10866-10885 Msa1356370:intron 20.0%
!! AGATGTCAAATATGATTAAA+TGG + tig0015627:11231-11250 Msa1356370:intron 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - tig0015627:11722-11741 None:intergenic 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - tig0015627:12107-12126 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + tig0015627:12450-12469 Msa1356370:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG + tig0015627:12578-12597 Msa1356370:three_prime_UTR 20.0%
!!! ATTTCCTTTGCTTCTAAAAT+CGG - tig0015627:6428-6447 None:intergenic 25.0%
! TTTAGAAGCAAAGGAAATTA+AGG + tig0015627:6430-6449 Msa1356370:five_prime_UTR 25.0%
! TCATTGAGAAATTGAAATTG+GGG - tig0015627:6524-6543 None:intergenic 25.0%
! CTTCATTGAGAAATTGAAAT+TGG - tig0015627:6526-6545 None:intergenic 25.0%
! CAATTTCAATTTCTCAATGA+AGG + tig0015627:6524-6543 Msa1356370:intron 25.0%
! AGAAAGCTTAATTGAAAGTA+TGG + tig0015627:6585-6604 Msa1356370:five_prime_UTR 25.0%
!! GAAAGCTTAATTGAAAGTAT+GGG + tig0015627:6586-6605 Msa1356370:five_prime_UTR 25.0%
!! AAAGCTTAATTGAAAGTATG+GGG + tig0015627:6587-6606 Msa1356370:five_prime_UTR 25.0%
! TGTAAATCATTTCTGTTTGA+TGG + tig0015627:6670-6689 Msa1356370:intron 25.0%
! TCTGTTTAAGAAGATACATA+GGG + tig0015627:6719-6738 Msa1356370:intron 25.0%
!! TTTTACCAAATCAGATACAA+AGG - tig0015627:6774-6793 None:intergenic 25.0%
!! AAAAAGCTATTTCACAATAC+TGG - tig0015627:6802-6821 None:intergenic 25.0%
! TATGATAATTTCATCCCATA+AGG + tig0015627:6930-6949 Msa1356370:exon 25.0%
! TTACATAGAACATACCTTAT+GGG - tig0015627:6947-6966 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - tig0015627:6948-6967 None:intergenic 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + tig0015627:7039-7058 Msa1356370:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG + tig0015627:7073-7092 Msa1356370:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + tig0015627:7424-7443 Msa1356370:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + tig0015627:8017-8036 Msa1356370:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG - tig0015627:8025-8044 None:intergenic 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - tig0015627:8348-8367 None:intergenic 25.0%
!! GTTATTGAAAGTTTTGCAAA+TGG + tig0015627:8475-8494 Msa1356370:intron 25.0%
!!! TATTGATTTATTTCTGGGAA+TGG + tig0015627:8498-8517 Msa1356370:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + tig0015627:8776-8795 Msa1356370:intron 25.0%
! CTAAAAACATACACAATCTA+AGG - tig0015627:9029-9048 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG + tig0015627:9369-9388 Msa1356370:intron 25.0%
!! TTCATACATCATTTTGCAAT+AGG + tig0015627:9504-9523 Msa1356370:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - tig0015627:9537-9556 None:intergenic 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + tig0015627:9547-9566 Msa1356370:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + tig0015627:9553-9572 Msa1356370:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + tig0015627:10149-10168 Msa1356370:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG + tig0015627:10520-10539 Msa1356370:intron 25.0%
!! GTCAATTTTTGAATCCTTTT+TGG + tig0015627:10697-10716 Msa1356370:intron 25.0%
! GTTGGTTAAATATACCAAAA+AGG - tig0015627:10714-10733 None:intergenic 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + tig0015627:11004-11023 Msa1356370:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + tig0015627:11027-11046 Msa1356370:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + tig0015627:11028-11047 Msa1356370:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG + tig0015627:11567-11586 Msa1356370:CDS 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - tig0015627:11723-11742 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + tig0015627:11749-11768 Msa1356370:intron 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - tig0015627:11803-11822 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - tig0015627:11928-11947 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG - tig0015627:12141-12160 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + tig0015627:12476-12495 Msa1356370:exon 25.0%
! ATGTTTAAAGACAAATCTAC+GGG + tig0015627:12579-12598 Msa1356370:three_prime_UTR 25.0%
AAATTGCATGTCGTTAGAAA+AGG + tig0015627:6232-6251 Msa1356370:five_prime_UTR 30.0%
AATTGCATGTCGTTAGAAAA+GGG + tig0015627:6233-6252 Msa1356370:five_prime_UTR 30.0%
! AAGCTTAATTGAAAGTATGG+GGG + tig0015627:6588-6607 Msa1356370:five_prime_UTR 30.0%
GTCTGTTTAAGAAGATACAT+AGG + tig0015627:6718-6737 Msa1356370:intron 30.0%
ATGGTTGAATTTGATCTGAA+TGG + tig0015627:6744-6763 Msa1356370:intron 30.0%
!!! TGTTGAGAATATTTTTTCGG+GGG + tig0015627:7074-7093 Msa1356370:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + tig0015627:7293-7312 Msa1356370:CDS 30.0%
TGTGATTTAAATGAGTTTGG+AGG + tig0015627:7427-7446 Msa1356370:intron 30.0%
AGTTTGGAGGAATTAATTTC+AGG + tig0015627:7440-7459 Msa1356370:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + tig0015627:7494-7513 Msa1356370:CDS 30.0%
! AAGTTTTTCATGGCATACAA+AGG + tig0015627:7504-7523 Msa1356370:CDS 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG + tig0015627:7515-7534 Msa1356370:CDS 30.0%
!! TAGTTCTGATTATTGTGATC+TGG + tig0015627:7667-7686 Msa1356370:intron 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + tig0015627:8223-8242 Msa1356370:intron 30.0%
AACTAGATAAGTCTTTGATG+TGG + tig0015627:8358-8377 Msa1356370:intron 30.0%
TAAGTCTTTGATGTGGTATT+TGG + tig0015627:8365-8384 Msa1356370:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + tig0015627:8448-8467 Msa1356370:intron 30.0%
AACCATCATACACATAAGAA+AGG - tig0015627:8540-8559 None:intergenic 30.0%
TGTGTATGATGGTTCAAATT+TGG + tig0015627:8546-8565 Msa1356370:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - tig0015627:8715-8734 None:intergenic 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + tig0015627:8788-8807 Msa1356370:intron 30.0%
! TTCAACTGAGTTTTCGAATT+TGG + tig0015627:8844-8863 Msa1356370:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + tig0015627:9040-9059 Msa1356370:intron 30.0%
! TCAATAGAAAGCATGAACAA+AGG - tig0015627:9071-9090 None:intergenic 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG + tig0015627:9088-9107 Msa1356370:intron 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + tig0015627:9187-9206 Msa1356370:intron 30.0%
TACAAACCAATTGATAGAGA+AGG + tig0015627:9218-9237 Msa1356370:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG - tig0015627:9227-9246 None:intergenic 30.0%
! TTGATAGAGAAGGATTTGTT+TGG + tig0015627:9228-9247 Msa1356370:intron 30.0%
!! GGTGGAATTTTAAGAAATGT+TGG + tig0015627:9255-9274 Msa1356370:intron 30.0%
TAGACCTACTGTTAGAAAAA+TGG + tig0015627:9290-9309 Msa1356370:intron 30.0%
!! ATGACCATTTTTCTAACAGT+AGG - tig0015627:9297-9316 None:intergenic 30.0%
TTGAGTGAAAATTGAACCAT+TGG + tig0015627:9340-9359 Msa1356370:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG + tig0015627:9459-9478 Msa1356370:intron 30.0%
AAAATCTGCTCTAATGTAGT+TGG + tig0015627:9639-9658 Msa1356370:intron 30.0%
! TCATAAACACATTTTACCCA+AGG - tig0015627:9867-9886 None:intergenic 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + tig0015627:10195-10214 Msa1356370:intron 30.0%
!! AACATAATGAAAAGCACTCT+CGG - tig0015627:10257-10276 None:intergenic 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG + tig0015627:10271-10290 Msa1356370:intron 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG + tig0015627:10272-10291 Msa1356370:intron 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - tig0015627:10479-10498 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + tig0015627:10584-10603 Msa1356370:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - tig0015627:10639-10658 None:intergenic 30.0%
TAAGTCTACTTCAATTGAGA+GGG - tig0015627:10667-10686 None:intergenic 30.0%
ATAAGTCTACTTCAATTGAG+AGG - tig0015627:10668-10687 None:intergenic 30.0%
TATCGCAGTTGAGTTTAAAT+TGG - tig0015627:11085-11104 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG + tig0015627:11133-11152 Msa1356370:CDS 30.0%
! ATATCACTGATAGTGTTATC+GGG + tig0015627:11134-11153 Msa1356370:CDS 30.0%
TATTGAAGACACTTTGTTGA+TGG + tig0015627:11352-11371 Msa1356370:CDS 30.0%
ATTGAAGACACTTTGTTGAT+GGG + tig0015627:11353-11372 Msa1356370:CDS 30.0%
AGAAAATCAATGTTGCAGTT+AGG - tig0015627:11536-11555 None:intergenic 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG + tig0015627:11577-11596 Msa1356370:CDS 30.0%
! AACAATTGCTCTTTTGATAC+GGG - tig0015627:11632-11651 None:intergenic 30.0%
! CAACAATTGCTCTTTTGATA+CGG - tig0015627:11633-11652 None:intergenic 30.0%
TAGAATTGGAGAAAATGTGA+AGG + tig0015627:11663-11682 Msa1356370:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - tig0015627:11701-11720 None:intergenic 30.0%
TCAAGCTTAATATGAGAAGA+TGG - tig0015627:11741-11760 None:intergenic 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + tig0015627:11931-11950 Msa1356370:intron 30.0%
TCGCAGTTTATTATTAGTGT+TGG + tig0015627:11998-12017 Msa1356370:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - tig0015627:12062-12081 None:intergenic 30.0%
TATAACCTGATTTCCTTCAT+AGG + tig0015627:12064-12083 Msa1356370:intron 30.0%
! GGTTATTAATTGATGACAAC+AGG + tig0015627:12217-12236 Msa1356370:intron 30.0%
ACTGAATTTCAAATTGCATG+TGG + tig0015627:12627-12646 Msa1356370:three_prime_UTR 30.0%
CTGAATTTCAAATTGCATGT+GGG + tig0015627:12628-12647 Msa1356370:three_prime_UTR 30.0%
TGAATTTCAAATTGCATGTG+GGG + tig0015627:12629-12648 Msa1356370:three_prime_UTR 30.0%
TATGATATGTACTCAGAACT+TGG - tig0015627:12662-12681 None:intergenic 30.0%
! GAGAGTGTAAATGGAAAAAT+AGG + tig0015627:12766-12785 Msa1356370:three_prime_UTR 30.0%
AGAAGAGAGAAGAGAGAAAA+GGG + tig0015627:6258-6277 Msa1356370:five_prime_UTR 35.0%
ATTGAAATTGGGGCTGAAAA+GGG - tig0015627:6514-6533 None:intergenic 35.0%
AATTGAAATTGGGGCTGAAA+AGG - tig0015627:6515-6534 None:intergenic 35.0%
! TTAATTGAAAGTATGGGGGT+TGG + tig0015627:6592-6611 Msa1356370:five_prime_UTR 35.0%
! TAATTGAAAGTATGGGGGTT+GGG + tig0015627:6593-6612 Msa1356370:five_prime_UTR 35.0%
GAGGAAGAAACAAGAAGAAT+TGG + tig0015627:6626-6645 Msa1356370:five_prime_UTR 35.0%
GAAGAAACAAGAAGAATTGG+AGG + tig0015627:6629-6648 Msa1356370:five_prime_UTR 35.0%
TAAGAAGATACATAGGGACA+TGG + tig0015627:6725-6744 Msa1356370:intron 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + tig0015627:7257-7276 Msa1356370:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+CGG + tig0015627:7305-7324 Msa1356370:CDS 35.0%
CGTCTATGTTTCTTAATCTC+AGG + tig0015627:7468-7487 Msa1356370:CDS 35.0%
AAAAAACCTTACCATCGCTA+AGG - tig0015627:7592-7611 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + tig0015627:7870-7889 Msa1356370:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + tig0015627:7886-7905 Msa1356370:intron 35.0%
GCTTTGCTTATTATGCATTC+AGG + tig0015627:7976-7995 Msa1356370:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - tig0015627:8073-8092 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG + tig0015627:8535-8554 Msa1356370:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG + tig0015627:8572-8591 Msa1356370:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + tig0015627:8919-8938 Msa1356370:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + tig0015627:9001-9020 Msa1356370:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG + tig0015627:9091-9110 Msa1356370:intron 35.0%
! GAGAAGGATTTGTTTGGTTA+TGG + tig0015627:9234-9253 Msa1356370:intron 35.0%
! AAGGATTTGTTTGGTTATGG+TGG + tig0015627:9237-9256 Msa1356370:intron 35.0%
ATTTAACACGAAATAGGCTC+TGG + tig0015627:9375-9394 Msa1356370:intron 35.0%
! AATCCTTGTCATTTCAATCC+GGG - tig0015627:9695-9714 None:intergenic 35.0%
! CAATCCTTGTCATTTCAATC+CGG - tig0015627:9696-9715 None:intergenic 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + tig0015627:9814-9833 Msa1356370:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - tig0015627:9862-9881 None:intergenic 35.0%
TATGGAAAACTCTTCGTGTA+AGG + tig0015627:10028-10047 Msa1356370:intron 35.0%
AACGAAGAACAACATAGAGA+TGG - tig0015627:10301-10320 None:intergenic 35.0%
ATGCTAGAACTGATGATTCA+TGG - tig0015627:10331-10350 None:intergenic 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + tig0015627:10330-10349 Msa1356370:intron 35.0%
ACATAGTTGCAAAACTCCAA+GGG - tig0015627:10406-10425 None:intergenic 35.0%
AACATAGTTGCAAAACTCCA+AGG - tig0015627:10407-10426 None:intergenic 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG + tig0015627:10525-10544 Msa1356370:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG + tig0015627:10736-10755 Msa1356370:intron 35.0%
! TATCACTGATAGTGTTATCG+GGG + tig0015627:11135-11154 Msa1356370:CDS 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - tig0015627:11291-11310 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG + tig0015627:11299-11318 Msa1356370:CDS 35.0%
AAATCTTCCATTCAGTGGTT+GGG + tig0015627:11300-11319 Msa1356370:CDS 35.0%
ATGCAGCTCAATTCATTCAT+TGG + tig0015627:11485-11504 Msa1356370:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + tig0015627:11503-11522 Msa1356370:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + tig0015627:11649-11668 Msa1356370:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + tig0015627:11854-11873 Msa1356370:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + tig0015627:11922-11941 Msa1356370:intron 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + tig0015627:12074-12093 Msa1356370:intron 35.0%
GATGAACTCTTCACATTTGA+AGG - tig0015627:12264-12283 None:intergenic 35.0%
GAATTTCAAATTGCATGTGG+GGG + tig0015627:12630-12649 Msa1356370:three_prime_UTR 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + tig0015627:12757-12776 Msa1356370:three_prime_UTR 35.0%
GAGAAGAGAGAAGAGAGAAA+AGG + tig0015627:6257-6276 Msa1356370:five_prime_UTR 40.0%
!!! TGCACCGATTTTAGAAGCAA+AGG + tig0015627:6421-6440 Msa1356370:five_prime_UTR 40.0%
GTGCTCCTTTGTATCTGATT+TGG + tig0015627:6766-6785 Msa1356370:intron 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + tig0015627:7249-7268 Msa1356370:CDS 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG + tig0015627:7316-7335 Msa1356370:intron 40.0%
TATTCTTCCCCATAACTCAC+CGG - tig0015627:7327-7346 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + tig0015627:7564-7583 Msa1356370:CDS 40.0%
TGATGTTGGCAACTTTGTGA+TGG + tig0015627:7952-7971 Msa1356370:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + tig0015627:7992-8011 Msa1356370:intron 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + tig0015627:8243-8262 Msa1356370:intron 40.0%
ACCATCATAGACCAGTCATT+GGG - tig0015627:8441-8460 None:intergenic 40.0%
AACCATCATAGACCAGTCAT+TGG - tig0015627:8442-8461 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + tig0015627:8626-8645 Msa1356370:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + tig0015627:9741-9760 Msa1356370:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + tig0015627:9742-9761 Msa1356370:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + tig0015627:9777-9796 Msa1356370:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - tig0015627:9846-9865 None:intergenic 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + tig0015627:9847-9866 Msa1356370:intron 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + tig0015627:9848-9867 Msa1356370:intron 40.0%
! TGTGTAAAGCTCTAATGCCA+AGG + tig0015627:9977-9996 Msa1356370:CDS 40.0%
! GTGTAAAGCTCTAATGCCAA+GGG + tig0015627:9978-9997 Msa1356370:CDS 40.0%
GCATGAGTGATGAAGCAATA+TGG + tig0015627:10010-10029 Msa1356370:CDS 40.0%
CATAGTTGCAAAACTCCAAG+GGG - tig0015627:10405-10424 None:intergenic 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - tig0015627:10659-10678 None:intergenic 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - tig0015627:10732-10751 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - tig0015627:10797-10816 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG + tig0015627:11295-11314 Msa1356370:CDS 40.0%
GACCAAAGATTAGGAACAGA+GGG - tig0015627:11794-11813 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - tig0015627:11795-11814 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG - tig0015627:12072-12091 None:intergenic 40.0%
! TGACAACAGGCAGATTTTGA+TGG + tig0015627:12230-12249 Msa1356370:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG + tig0015627:12236-12255 Msa1356370:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG + tig0015627:12285-12304 Msa1356370:CDS 40.0%
TTATCCAAGTCGACATCGTT+GGG - tig0015627:12343-12362 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + tig0015627:12495-12514 Msa1356370:three_prime_UTR 40.0%
TGATGAAGACAAGAGGAGAT+TGG + tig0015627:12502-12521 Msa1356370:three_prime_UTR 40.0%
GACAAGAGGAGATTGGAAAA+TGG + tig0015627:12509-12528 Msa1356370:three_prime_UTR 40.0%
GCATGCTGCTGAATAATTAG+TGG - tig0015627:12707-12726 None:intergenic 40.0%
AAGGGAACGAGAGAAAGAAG+AGG + tig0015627:6276-6295 Msa1356370:five_prime_UTR 45.0%
AGGGAACGAGAGAAAGAAGA+GGG + tig0015627:6277-6296 Msa1356370:five_prime_UTR 45.0%
AGAGAAAGAAGAGGGAACGA+AGG + tig0015627:6285-6304 Msa1356370:five_prime_UTR 45.0%
GAGAAAGAAGAGGGAACGAA+GGG + tig0015627:6286-6305 Msa1356370:five_prime_UTR 45.0%
ATTGGGGCTGAAAAGGGTTA+GGG - tig0015627:6508-6527 None:intergenic 45.0%
AATTGGGGCTGAAAAGGGTT+AGG - tig0015627:6509-6528 None:intergenic 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG + tig0015627:7315-7334 Msa1356370:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG + tig0015627:7317-7336 Msa1356370:intron 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + tig0015627:7991-8010 Msa1356370:intron 45.0%
AAGCATACACTCCCAATGAC+TGG + tig0015627:8427-8446 Msa1356370:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + tig0015627:8437-8456 Msa1356370:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + tig0015627:8625-8644 Msa1356370:intron 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + tig0015627:8627-8646 Msa1356370:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + tig0015627:9674-9693 Msa1356370:intron 45.0%
CTCATGCTTTCTTCATCCCT+TGG - tig0015627:9997-10016 None:intergenic 45.0%
ATCATGTGTATGCAACCCCT+TGG + tig0015627:10387-10406 Msa1356370:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - tig0015627:10796-10815 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + tig0015627:11139-11158 Msa1356370:CDS 45.0%
CTGCATTCTTGCATATCAGG+AGG + tig0015627:11323-11342 Msa1356370:CDS 45.0%
GATGGGCGCATATTATTACG+AGG + tig0015627:11370-11389 Msa1356370:CDS 45.0%
GAGTTTCTGCCAATACCAAG+TGG - tig0015627:11610-11629 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG - tig0015627:11781-11800 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + tig0015627:11789-11808 Msa1356370:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - tig0015627:11960-11979 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - tig0015627:12080-12099 None:intergenic 45.0%
AGTGTTCACATGAGAAGGCT+TGG + tig0015627:12290-12309 Msa1356370:CDS 45.0%
CTTATCCAAGTCGACATCGT+TGG - tig0015627:12344-12363 None:intergenic 45.0%
!! CAACGATGTCGACTTGGATA+AGG + tig0015627:12342-12361 Msa1356370:CDS 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + tig0015627:12467-12486 Msa1356370:intron 45.0%
CCTCACACTTTCTTCAGATG+AGG - tig0015627:12792-12811 None:intergenic 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG + tig0015627:12789-12808 Msa1356370:three_prime_UTR 45.0%
!! ATATATATATATATATATCA+AGG + tig0015627:8199-8218 Msa1356370:intron 5.0%
AGAGAAACGGGAGAGGAAGA+AGG + tig0015627:6180-6199 Msa1356370:five_prime_UTR 50.0%
GAGAAACGGGAGAGGAAGAA+GGG + tig0015627:6181-6200 Msa1356370:five_prime_UTR 50.0%
! TCTCCCGTTCCTGTTTCTCT+CGG - tig0015627:6313-6332 None:intergenic 50.0%
AGAGAGAACGGAAGAGGAGA+GGG + tig0015627:6348-6367 Msa1356370:five_prime_UTR 50.0%
!! GTGCAGATCAGAGTGTTGGA+CGG - tig0015627:6406-6425 None:intergenic 50.0%
ATCGGTGCAGATCAGAGTGT+TGG - tig0015627:6410-6429 None:intergenic 50.0%
GGCTGAAAAGGGTTAGGGTT+TGG - tig0015627:6503-6522 None:intergenic 50.0%
ATGGGGGTTGGGTTTGCAAT+TGG + tig0015627:6604-6623 Msa1356370:five_prime_UTR 50.0%
CGGGGGTTATCAGTACTCTT+TGG + tig0015627:7091-7110 Msa1356370:intron 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG + tig0015627:7108-7127 Msa1356370:CDS 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG + tig0015627:7583-7602 Msa1356370:CDS 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - tig0015627:8640-8659 None:intergenic 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + tig0015627:9100-9119 Msa1356370:intron 50.0%
! CCTTGTCATTTCAATCCGGG+CGG - tig0015627:9692-9711 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + tig0015627:9749-9768 Msa1356370:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + tig0015627:9750-9769 Msa1356370:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - tig0015627:9926-9945 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + tig0015627:9926-9945 Msa1356370:intron 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - tig0015627:9934-9953 None:intergenic 50.0%
AACGACCCGTGAGTGAGAAA+TGG - tig0015627:9935-9954 None:intergenic 50.0%
AGGCACAGAGAAGGATAGAC+TGG + tig0015627:10545-10564 Msa1356370:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + tig0015627:10793-10812 Msa1356370:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - tig0015627:11112-11131 None:intergenic 50.0%
CGGGGAAGGATGTGTGATTA+AGG + tig0015627:11153-11172 Msa1356370:CDS 50.0%
AATGCAGCCCAACCACTGAA+TGG - tig0015627:11310-11329 None:intergenic 50.0%
GGGCTGCATTCTTGCATATC+AGG + tig0015627:11320-11339 Msa1356370:CDS 50.0%
GCTAAAGGCAGTGTTCCACT+TGG + tig0015627:11592-11611 Msa1356370:CDS 50.0%
GGCAGTGTTCCACTTGGTAT+TGG + tig0015627:11598-11617 Msa1356370:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG - tig0015627:11782-11801 None:intergenic 50.0%
TACACTACGATGCCGCAAGA+AGG - tig0015627:11869-11888 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + tig0015627:12336-12355 Msa1356370:CDS 50.0%
! CAAATTGCATGTGGGGGTGT+AGG + tig0015627:12636-12655 Msa1356370:three_prime_UTR 50.0%
AAACGGGAGAGGAAGAAGGG+TGG + tig0015627:6184-6203 Msa1356370:five_prime_UTR 55.0%
ACGAAGGGACCGAGAGAAAC+AGG + tig0015627:6301-6320 Msa1356370:five_prime_UTR 55.0%
GGGACCGAGAGAAACAGGAA+CGG + tig0015627:6306-6325 Msa1356370:five_prime_UTR 55.0%
GGACCGAGAGAAACAGGAAC+GGG + tig0015627:6307-6326 Msa1356370:five_prime_UTR 55.0%
GAGAGAAACAGGAACGGGAG+AGG + tig0015627:6312-6331 Msa1356370:five_prime_UTR 55.0%
ACAGGAACGGGAGAGGAAGA+AGG + tig0015627:6319-6338 Msa1356370:five_prime_UTR 55.0%
CAGGAACGGGAGAGGAAGAA+GGG + tig0015627:6320-6339 Msa1356370:five_prime_UTR 55.0%
AGAAGGGCGACGAGAGAGAA+CGG + tig0015627:6336-6355 Msa1356370:five_prime_UTR 55.0%
GAGAGAGAACGGAAGAGGAG+AGG + tig0015627:6347-6366 Msa1356370:five_prime_UTR 55.0%
GGGGTTGGGTTTGCAATTGG+AGG + tig0015627:6607-6626 Msa1356370:five_prime_UTR 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + tig0015627:7578-7597 Msa1356370:CDS 55.0%
CCGCCCGGATTGAAATGACA+AGG + tig0015627:9689-9708 Msa1356370:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + tig0015627:9760-9779 Msa1356370:intron 55.0%
TGAGAAATGGGAGGGAGGGA+GGG - tig0015627:9922-9941 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - tig0015627:9927-9946 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - tig0015627:9930-9949 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + tig0015627:9927-9946 Msa1356370:intron 55.0%
ACCCGTGAGTGAGAAATGGG+AGG - tig0015627:9931-9950 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG + tig0015627:10536-10555 Msa1356370:intron 55.0%
GCGACGAGAGAGAACGGAAG+AGG + tig0015627:6342-6361 Msa1356370:five_prime_UTR 60.0%
!! GATCAGAGTGTTGGACGGCG+AGG - tig0015627:6401-6420 None:intergenic 60.0%
AAATGGGAGGGAGGGAGGGA+GGG - tig0015627:9918-9937 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG - tig0015627:9923-9942 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG - tig0015627:6394-6413 None:intergenic 65.0%
AATGGGAGGGAGGGAGGGAG+GGG - tig0015627:9917-9936 None:intergenic 65.0%
GAAATGGGAGGGAGGGAGGG+AGG - tig0015627:9919-9938 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - tig0015627:6391-6410 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0015627 gene 6175 12965 6175 ID=Msa1356370;Name=Msa1356370
tig0015627 mRNA 6175 12965 6175 ID=Msa1356370-mRNA-1;Parent=Msa1356370;Name=Msa1356370-mRNA-1;_AED=0.30;_eAED=0.30;_QI=402|0.72|0.75|1|0.72|0.66|12|485|252
tig0015627 exon 6175 6451 6175 ID=Msa1356370-mRNA-1:exon:9852;Parent=Msa1356370-mRNA-1
tig0015627 exon 6546 6650 6546 ID=Msa1356370-mRNA-1:exon:9853;Parent=Msa1356370-mRNA-1
tig0015627 exon 6911 6951 6911 ID=Msa1356370-mRNA-1:exon:9854;Parent=Msa1356370-mRNA-1
tig0015627 exon 7104 7129 7104 ID=Msa1356370-mRNA-1:exon:9855;Parent=Msa1356370-mRNA-1
tig0015627 exon 7239 7326 7239 ID=Msa1356370-mRNA-1:exon:9856;Parent=Msa1356370-mRNA-1
tig0015627 exon 7462 7604 7462 ID=Msa1356370-mRNA-1:exon:9857;Parent=Msa1356370-mRNA-1
tig0015627 exon 9975 10044 9975 ID=Msa1356370-mRNA-1:exon:9858;Parent=Msa1356370-mRNA-1
tig0015627 exon 11121 11174 11121 ID=Msa1356370-mRNA-1:exon:9859;Parent=Msa1356370-mRNA-1
tig0015627 exon 11293 11391 11293 ID=Msa1356370-mRNA-1:exon:9860;Parent=Msa1356370-mRNA-1
tig0015627 exon 11565 11684 11565 ID=Msa1356370-mRNA-1:exon:9861;Parent=Msa1356370-mRNA-1
tig0015627 exon 12239 12363 12239 ID=Msa1356370-mRNA-1:exon:9862;Parent=Msa1356370-mRNA-1
tig0015627 exon 12468 12965 12468 ID=Msa1356370-mRNA-1:exon:9863;Parent=Msa1356370-mRNA-1
tig0015627 five_prime_UTR 6175 6451 6175 ID=Msa1356370-mRNA-1:five_prime_utr;Parent=Msa1356370-mRNA-1
tig0015627 five_prime_UTR 6546 6650 6546 ID=Msa1356370-mRNA-1:five_prime_utr;Parent=Msa1356370-mRNA-1
tig0015627 five_prime_UTR 6911 6930 6911 ID=Msa1356370-mRNA-1:five_prime_utr;Parent=Msa1356370-mRNA-1
tig0015627 CDS 6931 6951 6931 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 7104 7129 7104 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 7239 7326 7239 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 7462 7604 7462 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 9975 10044 9975 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 11121 11174 11121 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 11293 11391 11293 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 11565 11684 11565 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 12239 12363 12239 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 CDS 12468 12480 12468 ID=Msa1356370-mRNA-1:cds;Parent=Msa1356370-mRNA-1
tig0015627 three_prime_UTR 12481 12965 12481 ID=Msa1356370-mRNA-1:three_prime_utr;Parent=Msa1356370-mRNA-1
Gene Sequence

>Msa1356370

ATGATAATTTCATCCCATAAGTACTCTTTGGTTCATGCAGCTGCTTGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGGTAAGAATGTGTAAAGCTCTAATGCCAAGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGAAAACTCTTCGTATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGGCGCATATTATTACGAGACAGAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGGATGGTCGAGTAA
Protein sequence

>Msa1356370

MIISSHKYSLVHAAACAYDRAAIKFRGVEADINFNIEDYEEDLKPVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMVRMCKALMPRDEESMSDEAIWKTLRMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMGAYYYETEADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWIRMVE*