Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023190 | XP_013467777.1 | 96.897 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 0.0 | 834 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023190 | sp|Q5IH14|SPP1_TOBAC | 70.048 | 414 | 119 | 2 | 1 | 410 | 1 | 413 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023190 | Q9FQ10 | 96.897 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 0.0 | 834 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023190 | Msa0118960 | 0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0023190 | Msa0128840 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0023190 | Msa0574830 | 0.804382 | 2.218566e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023190 | MtrunA17_Chr1g0176471 | 96.897 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 0.0 | 834 |
| Msa0023190 | MtrunA17_Chr1g0170411 | 60.941 | 425 | 157 | 3 | 1 | 418 | 1 | 423 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023190 | AT2G35840.1 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| Msa0023190 | AT2G35840.3 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| Msa0023190 | AT2G35840.2 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| Msa0023190 | AT2G35840.4 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| Msa0023190 | AT1G51420.1 | 62.972 | 424 | 150 | 4 | 1 | 418 | 1 | 423 | 0.0 | 531 |
| Msa0023190 | AT1G51420.3 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| Msa0023190 | AT1G51420.4 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| Msa0023190 | AT1G51420.2 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| Msa0023190 | AT3G52340.2 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.18e-174 | 494 |
| Msa0023190 | AT3G52340.7 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.18e-174 | 494 |
| Msa0023190 | AT3G52340.1 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.18e-174 | 494 |
| Msa0023190 | AT3G52340.3 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.18e-174 | 494 |
| Msa0023190 | AT3G52340.4 | 58.354 | 413 | 170 | 2 | 1 | 412 | 13 | 424 | 1.66e-174 | 495 |
| Msa0023190 | AT3G52340.5 | 58.354 | 413 | 170 | 2 | 1 | 412 | 13 | 424 | 1.66e-174 | 495 |
| Msa0023190 | AT3G52340.6 | 58.354 | 413 | 170 | 2 | 1 | 412 | 42 | 453 | 3.66e-174 | 495 |
| Msa0023190 | AT3G54270.1 | 54.327 | 416 | 185 | 3 | 1 | 412 | 1 | 415 | 2.52e-166 | 474 |
Find 146 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTTACTGTTAAATTTC+TGG | 0.089250 | 1_1:+44147308 | Msa0023190:three_prime_UTR |
| CAATGTCCTTGTCCCATTTC+TGG | 0.095011 | 1_1:-44144116 | None:intergenic |
| AGAGGCTCTTTCTAAGATTT+TGG | 0.167196 | 1_1:+44144416 | Msa0023190:CDS |
| TTCAGCATTCCAGGAGTTTA+TGG | 0.202008 | 1_1:+44144757 | Msa0023190:CDS |
| GCGTTATTGTTTGTCATATT+TGG | 0.212629 | 1_1:+44147393 | Msa0023190:three_prime_UTR |
| GCCTCAGAGCGTTGTGCATC+TGG | 0.226095 | 1_1:+44144985 | Msa0023190:CDS |
| TCTGAGGCATGCAGAATCTT+AGG | 0.240646 | 1_1:-44144970 | None:intergenic |
| GAATAGCTCGGCATCATTTC+CGG | 0.265204 | 1_1:-44144737 | None:intergenic |
| CATGGGACACCTTGACATTA+TGG | 0.277513 | 1_1:-44147273 | None:intergenic |
| CACAGATAAGTTCGGATATA+TGG | 0.284176 | 1_1:+44146117 | Msa0023190:CDS |
| CATCTCTTGGGGACAGGTTT+GGG | 0.285854 | 1_1:-44145041 | None:intergenic |
| TCTAATCACAGGATCAATTC+AGG | 0.290253 | 1_1:+44143552 | Msa0023190:intron |
| TACACATACCTTTCTTAGTA+TGG | 0.291808 | 1_1:-44146282 | None:intergenic |
| CATCTCTGCTTGATGATAGA+TGG | 0.297160 | 1_1:+44147363 | Msa0023190:three_prime_UTR |
| GGCTGGTGAAGTTTGATAAA+TGG | 0.304367 | 1_1:+44146138 | Msa0023190:CDS |
| ACATCTCTTGGGGACAGGTT+TGG | 0.339450 | 1_1:-44145042 | None:intergenic |
| TTCAAGAATTGAACCAGAAA+TGG | 0.339783 | 1_1:+44144103 | Msa0023190:CDS |
| TACATAACATTTATTGCAAA+AGG | 0.343935 | 1_1:-44147214 | None:intergenic |
| ATATCGCCACGATTCTTTGC+TGG | 0.355065 | 1_1:+44143942 | Msa0023190:CDS |
| TGGTGCTGACTATTCTCTTA+AGG | 0.356146 | 1_1:+44146013 | Msa0023190:CDS |
| GTGGGAACTGAGATTACTTA+TGG | 0.363501 | 1_1:+44144051 | Msa0023190:CDS |
| CATCAATCAACCTTCACCTT+TGG | 0.368032 | 1_1:-44142897 | None:intergenic |
| AGGGGAAACAGTTTAGGATA+TGG | 0.373276 | 1_1:+44146075 | Msa0023190:CDS |
| ACAGACATGATGGTTATATC+TGG | 0.375892 | 1_1:-44144030 | None:intergenic |
| ACAAACAGGGGAAACAGTTT+AGG | 0.376401 | 1_1:+44146069 | Msa0023190:CDS |
| GCTGTTTATTGCTGCTATAA+AGG | 0.379309 | 1_1:+44145176 | Msa0023190:CDS |
| AAACATAAATGAGGAGAAAA+GGG | 0.382031 | 1_1:-44147425 | None:intergenic |
| TCTTTGCTGGTGTTCTCAAC+TGG | 0.382613 | 1_1:+44143955 | Msa0023190:CDS |
| TTACTTATGCAAATGATGAT+TGG | 0.383287 | 1_1:-44147453 | None:intergenic |
| GTTATATCTGGAGTTATCAT+AGG | 0.393312 | 1_1:-44144018 | None:intergenic |
| TTTGAGGTTCAATGCCCTTT+GGG | 0.393753 | 1_1:+44143912 | Msa0023190:CDS |
| GCCGAGCTATTCAGCATTCC+AGG | 0.396491 | 1_1:+44144748 | Msa0023190:CDS |
| TAAACATAAATGAGGAGAAA+AGG | 0.399656 | 1_1:-44147426 | None:intergenic |
| AAAGGTGTATGGTAACAAAC+AGG | 0.400977 | 1_1:+44146055 | Msa0023190:CDS |
| CTCAGTTGTTTGTAGAGTAA+AGG | 0.417936 | 1_1:-44143985 | None:intergenic |
| CAATGTCTGAAACATCTCTT+GGG | 0.420133 | 1_1:-44145053 | None:intergenic |
| CCAATGTCTGAAACATCTCT+TGG | 0.421240 | 1_1:-44145054 | None:intergenic |
| GCCACTGCAGTAATTCCTCT+TGG | 0.422000 | 1_1:-44144924 | None:intergenic |
| GCGGCAATAGGATCGAATTA+AGG | 0.425135 | 1_1:+44142943 | Msa0023190:five_prime_UTR |
| GGTGTGTATATCCACCCTTC+TGG | 0.427354 | 1_1:+44145993 | Msa0023190:CDS |
| TGCTGGTGTTCTCAACTGGC+AGG | 0.441395 | 1_1:+44143959 | Msa0023190:CDS |
| TTTAATATGCAGGATCCATC+TGG | 0.447565 | 1_1:+44145972 | Msa0023190:intron |
| TTTGTCTGTTAAGTGAAAAG+TGG | 0.454824 | 1_1:+44145127 | Msa0023190:CDS |
| GCTGGTGAAGTTTGATAAAT+GGG | 0.455050 | 1_1:+44146139 | Msa0023190:CDS |
| TTAGTAGAAGAAGCGGCAAT+AGG | 0.471653 | 1_1:+44142931 | Msa0023190:five_prime_UTR |
| AAATCGATGGTTCCCGATGA+TGG | 0.472518 | 1_1:+44144075 | Msa0023190:CDS |
| AGTACCTGAGGCTTAAGTTC+AGG | 0.473435 | 1_1:-44144162 | None:intergenic |
| GCAGGCAGAAACAGAACAAC+GGG | 0.475371 | 1_1:+44144344 | Msa0023190:intron |
| CTTCCCTTCCACTTCACTAC+CGG | 0.475538 | 1_1:+44143055 | Msa0023190:five_prime_UTR |
| CTGAAACATCTCTTGGGGAC+AGG | 0.480413 | 1_1:-44145047 | None:intergenic |
| ACATAACATTTATTGCAAAA+GGG | 0.482678 | 1_1:-44147213 | None:intergenic |
| TCCAGGAGTTTATGGTGTCA+TGG | 0.483135 | 1_1:+44144765 | Msa0023190:CDS |
| CTAATCACAGGATCAATTCA+GGG | 0.484788 | 1_1:+44143553 | Msa0023190:intron |
| CGATGGTTCCCGATGATGGA+TGG | 0.484939 | 1_1:+44144079 | Msa0023190:CDS |
| AAAGGGATCACGATAGAACT+TGG | 0.486439 | 1_1:-44147196 | None:intergenic |
| CCACTGCAGTAATTCCTCTT+GGG | 0.490113 | 1_1:-44144923 | None:intergenic |
| CCAAGAGATGTTTCAGACAT+TGG | 0.490731 | 1_1:+44145054 | Msa0023190:CDS |
| GTTTCCTGAACTTAAGCCTC+AGG | 0.490979 | 1_1:+44144158 | Msa0023190:CDS |
| TCAAGAATTGAACCAGAAAT+GGG | 0.492584 | 1_1:+44144104 | Msa0023190:CDS |
| CTGAGGCATGCAGAATCTTA+GGG | 0.499882 | 1_1:-44144969 | None:intergenic |
| ACCATGACACCATAAACTCC+TGG | 0.503899 | 1_1:-44144766 | None:intergenic |
| GAAGGAATGAGAGAAGAAGA+AGG | 0.504919 | 1_1:-44143031 | None:intergenic |
| GCCCAAGTTAAAATGACCTA+TGG | 0.506142 | 1_1:-44145019 | None:intergenic |
| CCTGGTAATACTCTAGTTTG+TGG | 0.510248 | 1_1:+44144709 | Msa0023190:CDS |
| GATAATATAGACGGTTCCTA+TGG | 0.511377 | 1_1:+44147168 | Msa0023190:exon |
| TATTCTTATTCTGATTCGCT+TGG | 0.514446 | 1_1:+44142966 | Msa0023190:five_prime_UTR |
| CTCAGTTCCCACAGACATGA+TGG | 0.515217 | 1_1:-44144040 | None:intergenic |
| AGGATTCCGATTGGTTCACC+TGG | 0.515792 | 1_1:+44147101 | Msa0023190:intron |
| TTCTTGAACCCATCCATCAT+CGG | 0.519768 | 1_1:-44144088 | None:intergenic |
| GTGAAGTGGAAGGGAAGGGA+AGG | 0.520613 | 1_1:-44143049 | None:intergenic |
| TCTTGAACCCATCCATCATC+GGG | 0.522162 | 1_1:-44144087 | None:intergenic |
| GAAACAGTTTAGGATATGGT+TGG | 0.522204 | 1_1:+44146079 | Msa0023190:CDS |
| CCTCAGAGCGTTGTGCATCT+GGG | 0.531754 | 1_1:+44144986 | Msa0023190:CDS |
| TGTCACTACCATACTAAGAA+AGG | 0.533747 | 1_1:+44146274 | Msa0023190:CDS |
| TACCATTGTGTGATCGAGAT+CGG | 0.537477 | 1_1:-44143626 | None:intergenic |
| GTTGGCTACACAGATAAGTT+CGG | 0.538393 | 1_1:+44146109 | Msa0023190:CDS |
| CGGTAGTGAAGTGGAAGGGA+AGG | 0.546351 | 1_1:-44143054 | None:intergenic |
| AAGGAATGAGAGAAGAAGAA+GGG | 0.548907 | 1_1:-44143030 | None:intergenic |
| CAGATTGTTCCAACCATGAC+TGG | 0.550666 | 1_1:-44147135 | None:intergenic |
| AATTCAGGGATTGTACATCA+TGG | 0.551630 | 1_1:+44143567 | Msa0023190:exon |
| ATGCATCCAGGTGAACCAAT+CGG | 0.552499 | 1_1:-44147107 | None:intergenic |
| ACGTGCAGAAGTTGAGAACT+CGG | 0.555017 | 1_1:+44145152 | Msa0023190:CDS |
| ACTCTAGTTTGTGGTGACTC+CGG | 0.555273 | 1_1:+44144718 | Msa0023190:CDS |
| AATTTCAGATACATGTGTCA+TGG | 0.556883 | 1_1:-44147291 | None:intergenic |
| GACATATTACCACAAGGTGC+TGG | 0.557425 | 1_1:+44144631 | Msa0023190:CDS |
| TCCTGGAATGCTGAATAGCT+CGG | 0.559117 | 1_1:-44144749 | None:intergenic |
| ATTTCAGATACATGTGTCAT+GGG | 0.560704 | 1_1:-44147290 | None:intergenic |
| GCGAACTATTCTCTGCATCA+TGG | 0.563230 | 1_1:-44143888 | None:intergenic |
| AGATATAACCATCATGTCTG+TGG | 0.566248 | 1_1:+44144032 | Msa0023190:CDS |
| GATAAGTTCGGATATATGGC+TGG | 0.566741 | 1_1:+44146121 | Msa0023190:CDS |
| ACACACATTAGTAGAAGAAG+CGG | 0.567175 | 1_1:+44142924 | Msa0023190:five_prime_UTR |
| ATTACCAGGTAGCTTTCCCT+CGG | 0.568172 | 1_1:-44144695 | None:intergenic |
| GCGATATGAAGCTTCCCAAA+GGG | 0.568213 | 1_1:-44143926 | None:intergenic |
| GAGACCGAGGGAAAGCTACC+TGG | 0.568897 | 1_1:+44144691 | Msa0023190:CDS |
| GATGGTTCCCGATGATGGAT+GGG | 0.569266 | 1_1:+44144080 | Msa0023190:CDS |
| AGAGAATAGTCAGCACCAGA+AGG | 0.569688 | 1_1:-44146008 | None:intergenic |
| TTGGGTTTCAGGATTCCGAT+TGG | 0.574395 | 1_1:+44147092 | Msa0023190:intron |
| CCACAAACTAGAGTATTACC+AGG | 0.577400 | 1_1:-44144709 | None:intergenic |
| GATATAACCATCATGTCTGT+GGG | 0.578577 | 1_1:+44144033 | Msa0023190:CDS |
| CCGTCTATATTATCCACTCA+TGG | 0.588603 | 1_1:-44147159 | None:intergenic |
| GGACAAGGACATTGTCATTG+AGG | 0.590293 | 1_1:+44144125 | Msa0023190:CDS |
| GGATGCATGTGCACCAGTCA+TGG | 0.590310 | 1_1:+44147122 | Msa0023190:CDS |
| GGCGATATGAAGCTTCCCAA+AGG | 0.593384 | 1_1:-44143927 | None:intergenic |
| AACATAAATGAGGAGAAAAG+GGG | 0.600423 | 1_1:-44147424 | None:intergenic |
| GATTACTTATGGAAAATCGA+TGG | 0.601557 | 1_1:+44144062 | Msa0023190:CDS |
| AATAGTCAGCACCAGAAGGG+TGG | 0.601940 | 1_1:-44146004 | None:intergenic |
| AGAAGAAGAAGGGTGGTGAG+TGG | 0.603740 | 1_1:-44143020 | None:intergenic |
| TTGGCTTGTAAACATAAATG+AGG | 0.604216 | 1_1:-44147434 | None:intergenic |
| GATATGGTTGGACAATGTGT+TGG | 0.606614 | 1_1:+44146091 | Msa0023190:CDS |
| TGACCTTTGCCAGCACCTTG+TGG | 0.606824 | 1_1:-44144640 | None:intergenic |
| GAATGAGAGAAGAAGAAGGG+TGG | 0.608183 | 1_1:-44143027 | None:intergenic |
| ATAGAACTTGGATAAGCCAT+AGG | 0.610838 | 1_1:-44147184 | None:intergenic |
| GATGTTAAAATAATATATAG+CGG | 0.612438 | 1_1:+44144595 | Msa0023190:CDS |
| GAGAATAGTCAGCACCAGAA+GGG | 0.613279 | 1_1:-44146007 | None:intergenic |
| GCATGTGCACCAGTCATGGT+TGG | 0.613768 | 1_1:+44147126 | Msa0023190:CDS |
| GGGTGGATATACACACCAGA+TGG | 0.615271 | 1_1:-44145987 | None:intergenic |
| TCTGGGATTATACAAGCCAT+AGG | 0.615679 | 1_1:+44145003 | Msa0023190:CDS |
| TTACCACAAGGTGCTGGCAA+AGG | 0.617832 | 1_1:+44144637 | Msa0023190:CDS |
| TGGAACAATCTGACCATGAG+TGG | 0.618034 | 1_1:+44147146 | Msa0023190:CDS |
| GGTAGTGAAGTGGAAGGGAA+GGG | 0.620121 | 1_1:-44143053 | None:intergenic |
| CCCAGATGCACAACGCTCTG+AGG | 0.620546 | 1_1:-44144986 | None:intergenic |
| AAGAAGGGTGGTGAGTGGTG+AGG | 0.622953 | 1_1:-44143015 | None:intergenic |
| TGACTGGTGCACATGCATCC+AGG | 0.624058 | 1_1:-44147119 | None:intergenic |
| GAGTAACTAACCAAAGGTGA+AGG | 0.625826 | 1_1:+44142887 | None:intergenic |
| ATTACCGGTAGTGAAGTGGA+AGG | 0.628840 | 1_1:-44143059 | None:intergenic |
| CCATGAGTGGATAATATAGA+CGG | 0.631017 | 1_1:+44147159 | Msa0023190:exon |
| GCCAACTTGCAGATGAAGAG+CGG | 0.631632 | 1_1:+44146240 | Msa0023190:intron |
| TTTGATAAATGGGAGTTACA+CGG | 0.646192 | 1_1:+44146149 | Msa0023190:CDS |
| CAATGCTAAGCAAGTGACAG+AGG | 0.647164 | 1_1:+44144398 | Msa0023190:CDS |
| ATATAGCGGAGGAGTTGACA+TGG | 0.647276 | 1_1:+44144609 | Msa0023190:CDS |
| TAGAGTGAGTAACTAACCAA+AGG | 0.649642 | 1_1:+44142881 | None:intergenic |
| CTTGCAGATGAAGAGCGGCA+TGG | 0.655839 | 1_1:+44146245 | Msa0023190:intron |
| GTTAAAATAATATATAGCGG+AGG | 0.662156 | 1_1:+44144598 | Msa0023190:CDS |
| AGGTGTATGGTAACAAACAG+GGG | 0.662925 | 1_1:+44146057 | Msa0023190:CDS |
| TTCCGATCTCGATCACACAA+TGG | 0.663470 | 1_1:+44143624 | Msa0023190:CDS |
| GTAGGTAAGCAACGCCCAAG+AGG | 0.666196 | 1_1:+44144909 | Msa0023190:intron |
| CCCAAGAGGAATTACTGCAG+TGG | 0.669784 | 1_1:+44144923 | Msa0023190:CDS |
| TGCAGGCAGAAACAGAACAA+CGG | 0.681696 | 1_1:+44144343 | Msa0023190:intron |
| CTTTACTCTACAAACAACTG+AGG | 0.684288 | 1_1:+44143986 | Msa0023190:CDS |
| AAGGTGTATGGTAACAAACA+GGG | 0.688423 | 1_1:+44146056 | Msa0023190:CDS |
| TTACCGGTAGTGAAGTGGAA+GGG | 0.688968 | 1_1:-44143058 | None:intergenic |
| AGAACACCAGCAAAGAATCG+TGG | 0.694109 | 1_1:-44143948 | None:intergenic |
| AATGTCTGAAACATCTCTTG+GGG | 0.696343 | 1_1:-44145052 | None:intergenic |
| ATTGAACCAGAAATGGGACA+AGG | 0.722798 | 1_1:+44144110 | Msa0023190:CDS |
| GACATGGACATATTACCACA+AGG | 0.723394 | 1_1:+44144625 | Msa0023190:CDS |
| ATAGACTCAAATCTTCTGCG+CGG | 0.750289 | 1_1:+44143590 | Msa0023190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAATAAAATAGAAATT+GGG | - | chr1_1:44143132-44143151 | None:intergenic | 10.0% |
| !! | ATGAAAAATAAAATAGAAAT+TGG | - | chr1_1:44143133-44143152 | None:intergenic | 10.0% |
| !! | TAAAAAAAATACTGAAAATA+TGG | - | chr1_1:44144815-44144834 | None:intergenic | 10.0% |
| !!! | ACTAGTATTTAAAGTATAAT+TGG | + | chr1_1:44143396-44143415 | Msa0023190:intron | 15.0% |
| !! | GATGTTAAAATAATATATAG+CGG | + | chr1_1:44144595-44144614 | Msa0023190:CDS | 15.0% |
| !!! | TTAGATTATTAGTCTAAAAT+TGG | + | chr1_1:44144849-44144868 | Msa0023190:intron | 15.0% |
| !!! | TAGATTATTAGTCTAAAATT+GGG | + | chr1_1:44144850-44144869 | Msa0023190:intron | 15.0% |
| !!! | ATCATTAGTTATTTTTTATG+AGG | + | chr1_1:44145683-44145702 | Msa0023190:intron | 15.0% |
| !!! | GTATATAAATATTTTGAGAA+AGG | + | chr1_1:44146037-44146056 | Msa0023190:CDS | 15.0% |
| !! | TTAAAAGACTTAAATTTCAT+AGG | - | chr1_1:44146756-44146775 | None:intergenic | 15.0% |
| !! | AAAGAAATTATGAATTCATG+TGG | - | chr1_1:44143160-44143179 | None:intergenic | 20.0% |
| !!! | ATGTATTTTAGTGACTAAAT+TGG | - | chr1_1:44143364-44143383 | None:intergenic | 20.0% |
| !! | AAGTATAATTGGTACTAAAT+TGG | + | chr1_1:44143407-44143426 | Msa0023190:intron | 20.0% |
| !!! | TTGTTGTTTAATTTCTGTTT+AGG | + | chr1_1:44143471-44143490 | Msa0023190:intron | 20.0% |
| !!! | TTTTTTGAATTTCTAATCAC+AGG | + | chr1_1:44143541-44143560 | Msa0023190:intron | 20.0% |
| !! | CGAGAAAAATATAATACTAA+TGG | - | chr1_1:44143682-44143701 | None:intergenic | 20.0% |
| !!! | TGATTCATATTTTGAATGAT+CGG | + | chr1_1:44144317-44144336 | Msa0023190:intron | 20.0% |
| !! | CAAAAAATTACACAATGTTA+TGG | - | chr1_1:44144568-44144587 | None:intergenic | 20.0% |
| !!! | ATATTATTTTAACATCCAAC+TGG | - | chr1_1:44144591-44144610 | None:intergenic | 20.0% |
| !! | AAAAATACTGAAAATATGGT+TGG | - | chr1_1:44144811-44144830 | None:intergenic | 20.0% |
| !!! | TGCTTTAGTAAAAAGAATTT+TGG | - | chr1_1:44145295-44145314 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATGCACCAAAA+AGG | - | chr1_1:44145320-44145339 | None:intergenic | 20.0% |
| !!! | ATGTATCTAAAGTTAAATCA+AGG | - | chr1_1:44145534-44145553 | None:intergenic | 20.0% |
| !!! | TGATTTAACTTTAGATACAT+TGG | + | chr1_1:44145534-44145553 | Msa0023190:intron | 20.0% |
| !!! | TTTGGTAATATTTTCTACTT+TGG | + | chr1_1:44145566-44145585 | Msa0023190:intron | 20.0% |
| !!! | TGATGAATATTATCTTGTTT+TGG | + | chr1_1:44145603-44145622 | Msa0023190:intron | 20.0% |
| !! | CAAAATGTAGAATATCTAAT+TGG | - | chr1_1:44145733-44145752 | None:intergenic | 20.0% |
| !!! | ACTATTTTGTTTTAATATGC+AGG | + | chr1_1:44145962-44145981 | Msa0023190:intron | 20.0% |
| !!! | GTAATGCATAAGTATTTTTA+TGG | + | chr1_1:44146302-44146321 | Msa0023190:intron | 20.0% |
| !! | TTCAATATATGTTTATCACT+AGG | + | chr1_1:44146640-44146659 | Msa0023190:intron | 20.0% |
| !! | TCAATATATGTTTATCACTA+GGG | + | chr1_1:44146641-44146660 | Msa0023190:intron | 20.0% |
| !!! | CTTTTAATTTGCCAATAATT+AGG | + | chr1_1:44146769-44146788 | Msa0023190:intron | 20.0% |
| !! | CTAATATATCTATGAAATGT+AGG | - | chr1_1:44146838-44146857 | None:intergenic | 20.0% |
| !!! | ATTTTCACTATATTTTTACG+CGG | + | chr1_1:44147040-44147059 | Msa0023190:intron | 20.0% |
| !! | TTGCTAATAAGAATGAAATT+TGG | + | chr1_1:44147073-44147092 | Msa0023190:intron | 20.0% |
| !! | TGCTAATAAGAATGAAATTT+GGG | + | chr1_1:44147074-44147093 | Msa0023190:intron | 20.0% |
| !! | ACATAACATTTATTGCAAAA+GGG | - | chr1_1:44147216-44147235 | None:intergenic | 20.0% |
| !! | TACATAACATTTATTGCAAA+AGG | - | chr1_1:44147217-44147236 | None:intergenic | 20.0% |
| !!! | TAATATTTTCCATAATGTCA+AGG | + | chr1_1:44147264-44147283 | Msa0023190:three_prime_UTR | 20.0% |
| !! | GAAATTTACTGTTAAATTTC+TGG | + | chr1_1:44147308-44147327 | Msa0023190:three_prime_UTR | 20.0% |
| ! | AATACAGATTGTAATGATGA+TGG | - | chr1_1:44143278-44143297 | None:intergenic | 25.0% |
| !! | ATTATTAGTTTGAGCAACAA+TGG | + | chr1_1:44144278-44144297 | Msa0023190:intron | 25.0% |
| ! | GAAATCATTTCTGAGTAAAA+TGG | - | chr1_1:44144475-44144494 | None:intergenic | 25.0% |
| ! | GTTAAAATAATATATAGCGG+AGG | + | chr1_1:44144598-44144617 | Msa0023190:CDS | 25.0% |
| !!! | CTCAAACTTTTTAAGCAAAT+AGG | - | chr1_1:44144674-44144693 | None:intergenic | 25.0% |
| ! | ATGCATAAAGAACATACAAT+AGG | - | chr1_1:44145242-44145261 | None:intergenic | 25.0% |
| !!! | TTTACTAAAGCATTCCTTTT+TGG | + | chr1_1:44145303-44145322 | Msa0023190:intron | 25.0% |
| !!! | TTTTTCATTTTCGAGTTTCA+TGG | + | chr1_1:44145335-44145354 | Msa0023190:intron | 25.0% |
| !!! | TATTATCTTGTTTTGGCAAT+TGG | + | chr1_1:44145610-44145629 | Msa0023190:intron | 25.0% |
| ! | GTTCAACCATTATAACAATT+CGG | + | chr1_1:44145780-44145799 | Msa0023190:intron | 25.0% |
| ! | TCTATTCCGAATTGTTATAA+TGG | - | chr1_1:44145789-44145808 | None:intergenic | 25.0% |
| !!! | AATATTTTGAGAAAGGTGTA+TGG | + | chr1_1:44146044-44146063 | Msa0023190:CDS | 25.0% |
| !!! | TGTGGTTTTTAAGAAAACAA+TGG | - | chr1_1:44146437-44146456 | None:intergenic | 25.0% |
| ! | TGACAAATTTATCCCTATAA+TGG | + | chr1_1:44146812-44146831 | Msa0023190:intron | 25.0% |
| ! | GTGAAAATGCAAATTAGTAA+CGG | - | chr1_1:44147028-44147047 | None:intergenic | 25.0% |
| ! | AAACATAAATGAGGAGAAAA+GGG | - | chr1_1:44147428-44147447 | None:intergenic | 25.0% |
| ! | TAAACATAAATGAGGAGAAA+AGG | - | chr1_1:44147429-44147448 | None:intergenic | 25.0% |
| ! | TTACTTATGCAAATGATGAT+TGG | - | chr1_1:44147456-44147475 | None:intergenic | 25.0% |
| ! | TATTCTTATTCTGATTCGCT+TGG | + | chr1_1:44142966-44142985 | Msa0023190:five_prime_UTR | 30.0% |
| GAAGGAGAATGAAAAATTAC+CGG | - | chr1_1:44143077-44143096 | None:intergenic | 30.0% | |
| AATTTCTGTTTAGGAAGAGA+AGG | + | chr1_1:44143480-44143499 | Msa0023190:intron | 30.0% | |
| ATTTCTGTTTAGGAAGAGAA+GGG | + | chr1_1:44143481-44143500 | Msa0023190:intron | 30.0% | |
| ! | TCACACAATGGTATATTTTG+TGG | + | chr1_1:44143636-44143655 | Msa0023190:intron | 30.0% |
| CACACATTCAAAATGAAGTT+CGG | + | chr1_1:44143796-44143815 | Msa0023190:intron | 30.0% | |
| ! | TGATAAGTTTTTCTGATTGC+AGG | + | chr1_1:44143858-44143877 | Msa0023190:intron | 30.0% |
| ! | GTTATATCTGGAGTTATCAT+AGG | - | chr1_1:44144021-44144040 | None:intergenic | 30.0% |
| GATTACTTATGGAAAATCGA+TGG | + | chr1_1:44144062-44144081 | Msa0023190:CDS | 30.0% | |
| TTCAAGAATTGAACCAGAAA+TGG | + | chr1_1:44144103-44144122 | Msa0023190:CDS | 30.0% | |
| TCAAGAATTGAACCAGAAAT+GGG | + | chr1_1:44144104-44144123 | Msa0023190:CDS | 30.0% | |
| ! | TTATTGTTTTCTGTGAACCA+TGG | + | chr1_1:44144215-44144234 | Msa0023190:intron | 30.0% |
| CAAATCATGTGTATATACGT+TGG | + | chr1_1:44144498-44144517 | Msa0023190:intron | 30.0% | |
| !!! | TTGTGTAATTTTTTGCCAGT+TGG | + | chr1_1:44144573-44144592 | Msa0023190:intron | 30.0% |
| ! | AGGGTTATCTTTTGCATTTT+CGG | - | chr1_1:44144953-44144972 | None:intergenic | 30.0% |
| TTTGTCTGTTAAGTGAAAAG+TGG | + | chr1_1:44145127-44145146 | Msa0023190:CDS | 30.0% | |
| TAGGCAATCTGTAAAAGTAA+GGG | - | chr1_1:44145223-44145242 | None:intergenic | 30.0% | |
| ATAGGCAATCTGTAAAAGTA+AGG | - | chr1_1:44145224-44145243 | None:intergenic | 30.0% | |
| CAAATTCTGAGTATACAAAC+AGG | + | chr1_1:44145363-44145382 | Msa0023190:intron | 30.0% | |
| ! | TTTTTATCTATATCTCCCGA+AGG | + | chr1_1:44145422-44145441 | Msa0023190:intron | 30.0% |
| ATGTAAAAACTGCACAAATG+CGG | - | chr1_1:44145510-44145529 | None:intergenic | 30.0% | |
| ! | TCTGTTGATGAAAGATATTC+TGG | - | chr1_1:44145652-44145671 | None:intergenic | 30.0% |
| GTGATCAAGAAAAGAGATTA+TGG | - | chr1_1:44145886-44145905 | None:intergenic | 30.0% | |
| TTTGATAAATGGGAGTTACA+CGG | + | chr1_1:44146149-44146168 | Msa0023190:CDS | 30.0% | |
| AGTTCGAGAGATATAAAAGA+GGG | - | chr1_1:44146219-44146238 | None:intergenic | 30.0% | |
| AAGTTCGAGAGATATAAAAG+AGG | - | chr1_1:44146220-44146239 | None:intergenic | 30.0% | |
| TACACATACCTTTCTTAGTA+TGG | - | chr1_1:44146285-44146304 | None:intergenic | 30.0% | |
| TATGGAGTGAATAAGCAAAT+TGG | + | chr1_1:44146320-44146339 | Msa0023190:intron | 30.0% | |
| ! | ATAGTCTGATTTTTGCGAAT+TGG | + | chr1_1:44146370-44146389 | Msa0023190:intron | 30.0% |
| !! | GGTTTTTAAGAAAACAATGG+AGG | - | chr1_1:44146434-44146453 | None:intergenic | 30.0% |
| TGGGTAAATCTGAAAATAAC+TGG | + | chr1_1:44146513-44146532 | Msa0023190:intron | 30.0% | |
| !! | ATTGTTTTTCAGAACAACTG+TGG | + | chr1_1:44146571-44146590 | Msa0023190:intron | 30.0% |
| !! | TTGTTTTTCAGAACAACTGT+GGG | + | chr1_1:44146572-44146591 | Msa0023190:intron | 30.0% |
| ATTGTGCAAGACCTAATTAT+TGG | - | chr1_1:44146783-44146802 | None:intergenic | 30.0% | |
| ATGAAATGTAGGCCATTATA+GGG | - | chr1_1:44146827-44146846 | None:intergenic | 30.0% | |
| TATGAAATGTAGGCCATTAT+AGG | - | chr1_1:44146828-44146847 | None:intergenic | 30.0% | |
| TCATTACCTTTAACGACAAA+AGG | + | chr1_1:44146930-44146949 | Msa0023190:intron | 30.0% | |
| CATTACCTTTAACGACAAAA+GGG | + | chr1_1:44146931-44146950 | Msa0023190:intron | 30.0% | |
| ! | TTTTCCGTTTGGTAAAAATG+AGG | + | chr1_1:44146991-44147010 | Msa0023190:intron | 30.0% |
| TTTCCGTTTGGTAAAAATGA+GGG | + | chr1_1:44146992-44147011 | Msa0023190:intron | 30.0% | |
| ! | AAGAATGAAATTTGGGTTTC+AGG | + | chr1_1:44147081-44147100 | Msa0023190:intron | 30.0% |
| ATTTCAGATACATGTGTCAT+GGG | - | chr1_1:44147293-44147312 | None:intergenic | 30.0% | |
| AATTTCAGATACATGTGTCA+TGG | - | chr1_1:44147294-44147313 | None:intergenic | 30.0% | |
| GCGTTATTGTTTGTCATATT+TGG | + | chr1_1:44147393-44147412 | Msa0023190:three_prime_UTR | 30.0% | |
| AACATAAATGAGGAGAAAAG+GGG | - | chr1_1:44147427-44147446 | None:intergenic | 30.0% | |
| !! | TTGGCTTGTAAACATAAATG+AGG | - | chr1_1:44147437-44147456 | None:intergenic | 30.0% |
| ACACACATTAGTAGAAGAAG+CGG | + | chr1_1:44142924-44142943 | Msa0023190:five_prime_UTR | 35.0% | |
| AAGGAATGAGAGAAGAAGAA+GGG | - | chr1_1:44143033-44143052 | None:intergenic | 35.0% | |
| AAAAATTACCGGTAGTGAAG+TGG | - | chr1_1:44143066-44143085 | None:intergenic | 35.0% | |
| TTGGGTAAAGCAAGATGAAA+GGG | - | chr1_1:44143114-44143133 | None:intergenic | 35.0% | |
| ATTGGGTAAAGCAAGATGAA+AGG | - | chr1_1:44143115-44143134 | None:intergenic | 35.0% | |
| TCTAATCACAGGATCAATTC+AGG | + | chr1_1:44143552-44143571 | Msa0023190:intron | 35.0% | |
| CTAATCACAGGATCAATTCA+GGG | + | chr1_1:44143553-44143572 | Msa0023190:intron | 35.0% | |
| AATTCAGGGATTGTACATCA+TGG | + | chr1_1:44143567-44143586 | Msa0023190:exon | 35.0% | |
| CTCAGTTGTTTGTAGAGTAA+AGG | - | chr1_1:44143988-44144007 | None:intergenic | 35.0% | |
| CTTTACTCTACAAACAACTG+AGG | + | chr1_1:44143986-44144005 | Msa0023190:CDS | 35.0% | |
| ACAGACATGATGGTTATATC+TGG | - | chr1_1:44144033-44144052 | None:intergenic | 35.0% | |
| AGATATAACCATCATGTCTG+TGG | + | chr1_1:44144032-44144051 | Msa0023190:CDS | 35.0% | |
| GATATAACCATCATGTCTGT+GGG | + | chr1_1:44144033-44144052 | Msa0023190:CDS | 35.0% | |
| GGTATTCACTGTGATTTGAT+TGG | + | chr1_1:44144192-44144211 | Msa0023190:intron | 35.0% | |
| !!! | AGAGGCTCTTTCTAAGATTT+TGG | + | chr1_1:44144416-44144435 | Msa0023190:CDS | 35.0% |
| ! | CTTAAAAAGTTTGAGACCGA+GGG | + | chr1_1:44144679-44144698 | Msa0023190:CDS | 35.0% |
| !! | TGCATCTGTTTCTGTTCATT+GGG | + | chr1_1:44144887-44144906 | Msa0023190:intron | 35.0% |
| !!! | AGCCATAGGTCATTTTAACT+TGG | + | chr1_1:44145017-44145036 | Msa0023190:CDS | 35.0% |
| !!! | GCCATAGGTCATTTTAACTT+GGG | + | chr1_1:44145018-44145037 | Msa0023190:CDS | 35.0% |
| ! | AATGTCTGAAACATCTCTTG+GGG | - | chr1_1:44145055-44145074 | None:intergenic | 35.0% |
| ! | CAATGTCTGAAACATCTCTT+GGG | - | chr1_1:44145056-44145075 | None:intergenic | 35.0% |
| GCTGTTTATTGCTGCTATAA+AGG | + | chr1_1:44145176-44145195 | Msa0023190:CDS | 35.0% | |
| AAGGGATATCAATCATACAG+TGG | - | chr1_1:44145205-44145224 | None:intergenic | 35.0% | |
| ACGTAAAAACTGCACAAATG+AGG | - | chr1_1:44145449-44145468 | None:intergenic | 35.0% | |
| ! | ATACATTGGTCACTTTGCTT+TGG | + | chr1_1:44145548-44145567 | Msa0023190:intron | 35.0% |
| ATTCGGAATAGACATTTCCA+TGG | + | chr1_1:44145797-44145816 | Msa0023190:intron | 35.0% | |
| TTCGGAATAGACATTTCCAT+GGG | + | chr1_1:44145798-44145817 | Msa0023190:intron | 35.0% | |
| TCAAGAAAAGAGATTATGGC+AGG | - | chr1_1:44145882-44145901 | None:intergenic | 35.0% | |
| AACTCTTGCATAAAGACTCA+TGG | - | chr1_1:44145921-44145940 | None:intergenic | 35.0% | |
| TTTAATATGCAGGATCCATC+TGG | + | chr1_1:44145972-44145991 | Msa0023190:intron | 35.0% | |
| ! | AAAGGTGTATGGTAACAAAC+AGG | + | chr1_1:44146055-44146074 | Msa0023190:CDS | 35.0% |
| AAGGTGTATGGTAACAAACA+GGG | + | chr1_1:44146056-44146075 | Msa0023190:CDS | 35.0% | |
| ! | GAAACAGTTTAGGATATGGT+TGG | + | chr1_1:44146079-44146098 | Msa0023190:CDS | 35.0% |
| CACAGATAAGTTCGGATATA+TGG | + | chr1_1:44146117-44146136 | Msa0023190:CDS | 35.0% | |
| GCTGGTGAAGTTTGATAAAT+GGG | + | chr1_1:44146139-44146158 | Msa0023190:CDS | 35.0% | |
| TTCGAGAGATATAAAAGAGG+GGG | - | chr1_1:44146217-44146236 | None:intergenic | 35.0% | |
| GTTCGAGAGATATAAAAGAG+GGG | - | chr1_1:44146218-44146237 | None:intergenic | 35.0% | |
| TGTCACTACCATACTAAGAA+AGG | + | chr1_1:44146274-44146293 | Msa0023190:CDS | 35.0% | |
| !!! | TGTTTTTTTCCCGTTTGGAT+GGG | - | chr1_1:44146474-44146493 | None:intergenic | 35.0% |
| ATCCAAACGGGAAAAAAACA+CGG | + | chr1_1:44146474-44146493 | Msa0023190:intron | 35.0% | |
| ! | ATAACTGGTGTTTTTCTGTC+TGG | + | chr1_1:44146528-44146547 | Msa0023190:intron | 35.0% |
| ! | ATAGTCCCTTTTGTCGTTAA+AGG | - | chr1_1:44146939-44146958 | None:intergenic | 35.0% |
| ! | TCGTGAATGTATTTTCCGTT+TGG | + | chr1_1:44146980-44146999 | Msa0023190:intron | 35.0% |
| !! | AGTCCCTCATTTTTACCAAA+CGG | - | chr1_1:44146998-44147017 | None:intergenic | 35.0% |
| CCATGAGTGGATAATATAGA+CGG | + | chr1_1:44147159-44147178 | Msa0023190:exon | 35.0% | |
| GATAATATAGACGGTTCCTA+TGG | + | chr1_1:44147168-44147187 | Msa0023190:exon | 35.0% | |
| ATAGAACTTGGATAAGCCAT+AGG | - | chr1_1:44147187-44147206 | None:intergenic | 35.0% | |
| CATCAATCAACCTTCACCTT+TGG | - | chr1_1:44142900-44142919 | None:intergenic | 40.0% | |
| TTAGTAGAAGAAGCGGCAAT+AGG | + | chr1_1:44142931-44142950 | Msa0023190:five_prime_UTR | 40.0% | |
| GAAGGAATGAGAGAAGAAGA+AGG | - | chr1_1:44143034-44143053 | None:intergenic | 40.0% | |
| TGGGTAAAGCAAGATGAAAG+GGG | - | chr1_1:44143113-44143132 | None:intergenic | 40.0% | |
| ACCACTGTGTCGAATTGTTT+AGG | + | chr1_1:44143198-44143217 | Msa0023190:intron | 40.0% | |
| ACCTAAACAATTCGACACAG+TGG | - | chr1_1:44143202-44143221 | None:intergenic | 40.0% | |
| ATAGACTCAAATCTTCTGCG+CGG | + | chr1_1:44143590-44143609 | Msa0023190:CDS | 40.0% | |
| TACCATTGTGTGATCGAGAT+CGG | - | chr1_1:44143629-44143648 | None:intergenic | 40.0% | |
| GTGTGTGTGATAACACATGT+TGG | - | chr1_1:44143781-44143800 | None:intergenic | 40.0% | |
| !! | AATGAAGTTCGGTGTTACAG+TGG | + | chr1_1:44143807-44143826 | Msa0023190:intron | 40.0% |
| TCGTGAACTTGTGATTTGAG+TGG | + | chr1_1:44143834-44143853 | Msa0023190:intron | 40.0% | |
| !! | CAGAGAATAGTTCGCTTTTG+AGG | + | chr1_1:44143896-44143915 | Msa0023190:CDS | 40.0% |
| !!! | TTTTGAGGTTCAATGCCCTT+TGG | + | chr1_1:44143911-44143930 | Msa0023190:CDS | 40.0% |
| ! | TTTGAGGTTCAATGCCCTTT+GGG | + | chr1_1:44143912-44143931 | Msa0023190:CDS | 40.0% |
| GTGGGAACTGAGATTACTTA+TGG | + | chr1_1:44144051-44144070 | Msa0023190:CDS | 40.0% | |
| TTCTTGAACCCATCCATCAT+CGG | - | chr1_1:44144091-44144110 | None:intergenic | 40.0% | |
| ATTGAACCAGAAATGGGACA+AGG | + | chr1_1:44144110-44144129 | Msa0023190:CDS | 40.0% | |
| ! | ATACCTACTCAAAGTACCTG+AGG | - | chr1_1:44144177-44144196 | None:intergenic | 40.0% |
| ! | TTTTCTGTGAACCATGGATC+AGG | + | chr1_1:44144221-44144240 | Msa0023190:intron | 40.0% |
| CAACAATGGCTTCAATCAAG+TGG | + | chr1_1:44144292-44144311 | Msa0023190:intron | 40.0% | |
| ! | TTTTGAATGATCGGTACTGC+AGG | + | chr1_1:44144326-44144345 | Msa0023190:intron | 40.0% |
| !!! | TCTAAGATTTTGGAACAGCG+CGG | + | chr1_1:44144426-44144445 | Msa0023190:CDS | 40.0% |
| GACATGGACATATTACCACA+AGG | + | chr1_1:44144625-44144644 | Msa0023190:CDS | 40.0% | |
| ! | GCTTAAAAAGTTTGAGACCG+AGG | + | chr1_1:44144678-44144697 | Msa0023190:CDS | 40.0% |
| ! | CCACAAACTAGAGTATTACC+AGG | - | chr1_1:44144712-44144731 | None:intergenic | 40.0% |
| ! | CCTGGTAATACTCTAGTTTG+TGG | + | chr1_1:44144709-44144728 | Msa0023190:CDS | 40.0% |
| TTCAGCATTCCAGGAGTTTA+TGG | + | chr1_1:44144757-44144776 | Msa0023190:CDS | 40.0% | |
| !! | CTGCATCTGTTTCTGTTCAT+TGG | + | chr1_1:44144886-44144905 | Msa0023190:intron | 40.0% |
| !! | TCTGTTTCTGTTCATTGGGT+AGG | + | chr1_1:44144891-44144910 | Msa0023190:intron | 40.0% |
| ! | TCTGGGATTATACAAGCCAT+AGG | + | chr1_1:44145003-44145022 | Msa0023190:CDS | 40.0% |
| GCCCAAGTTAAAATGACCTA+TGG | - | chr1_1:44145022-44145041 | None:intergenic | 40.0% | |
| ! | CCAATGTCTGAAACATCTCT+TGG | - | chr1_1:44145057-44145076 | None:intergenic | 40.0% |
| CCAAGAGATGTTTCAGACAT+TGG | + | chr1_1:44145054-44145073 | Msa0023190:CDS | 40.0% | |
| GGACTACATTTCAAATACGC+AGG | - | chr1_1:44145274-44145293 | None:intergenic | 40.0% | |
| GAAAAGAGATTATGGCAGGA+AGG | - | chr1_1:44145878-44145897 | None:intergenic | 40.0% | |
| !! | TGGTGCTGACTATTCTCTTA+AGG | + | chr1_1:44146013-44146032 | Msa0023190:CDS | 40.0% |
| AGGTGTATGGTAACAAACAG+GGG | + | chr1_1:44146057-44146076 | Msa0023190:CDS | 40.0% | |
| ACAAACAGGGGAAACAGTTT+AGG | + | chr1_1:44146069-44146088 | Msa0023190:CDS | 40.0% | |
| ! | AGGGGAAACAGTTTAGGATA+TGG | + | chr1_1:44146075-44146094 | Msa0023190:CDS | 40.0% |
| GATATGGTTGGACAATGTGT+TGG | + | chr1_1:44146091-44146110 | Msa0023190:CDS | 40.0% | |
| GTTGGCTACACAGATAAGTT+CGG | + | chr1_1:44146109-44146128 | Msa0023190:CDS | 40.0% | |
| GATAAGTTCGGATATATGGC+TGG | + | chr1_1:44146121-44146140 | Msa0023190:CDS | 40.0% | |
| GGCTGGTGAAGTTTGATAAA+TGG | + | chr1_1:44146138-44146157 | Msa0023190:CDS | 40.0% | |
| GTCCTCAAAATTGTTAGCGT+AGG | + | chr1_1:44146342-44146361 | Msa0023190:intron | 40.0% | |
| ! | GACCTACGCTAACAATTTTG+AGG | - | chr1_1:44146347-44146366 | None:intergenic | 40.0% |
| !!! | GTGTTTTTTTCCCGTTTGGA+TGG | - | chr1_1:44146475-44146494 | None:intergenic | 40.0% |
| ! | AAACACGGCTTTTCTAACGT+TGG | + | chr1_1:44146489-44146508 | Msa0023190:intron | 40.0% |
| !! | TTTTTCAGAACAACTGTGGG+TGG | + | chr1_1:44146575-44146594 | Msa0023190:intron | 40.0% |
| ! | TTTTCAGAACAACTGTGGGT+GGG | + | chr1_1:44146576-44146595 | Msa0023190:intron | 40.0% |
| TATCACTAGGGACTATGATG+TGG | + | chr1_1:44146653-44146672 | Msa0023190:intron | 40.0% | |
| AATGATGTGGGACTAACATG+GGG | - | chr1_1:44146702-44146721 | None:intergenic | 40.0% | |
| CAATGATGTGGGACTAACAT+GGG | - | chr1_1:44146703-44146722 | None:intergenic | 40.0% | |
| AGTCTCTAGTAAGCTAGCAT+TGG | + | chr1_1:44146856-44146875 | Msa0023190:intron | 40.0% | |
| CCGTCTATATTATCCACTCA+TGG | - | chr1_1:44147162-44147181 | None:intergenic | 40.0% | |
| AAAGGGATCACGATAGAACT+TGG | - | chr1_1:44147199-44147218 | None:intergenic | 40.0% | |
| ! | CATCTCTGCTTGATGATAGA+TGG | + | chr1_1:44147363-44147382 | Msa0023190:three_prime_UTR | 40.0% |
| GCGGCAATAGGATCGAATTA+AGG | + | chr1_1:44142943-44142962 | Msa0023190:five_prime_UTR | 45.0% | |
| GAATGAGAGAAGAAGAAGGG+TGG | - | chr1_1:44143030-44143049 | None:intergenic | 45.0% | |
| TTACCGGTAGTGAAGTGGAA+GGG | - | chr1_1:44143061-44143080 | None:intergenic | 45.0% | |
| ATTACCGGTAGTGAAGTGGA+AGG | - | chr1_1:44143062-44143081 | None:intergenic | 45.0% | |
| GGTAAAGCAAGATGAAAGGG+GGG | - | chr1_1:44143111-44143130 | None:intergenic | 45.0% | |
| GGGTAAAGCAAGATGAAAGG+GGG | - | chr1_1:44143112-44143131 | None:intergenic | 45.0% | |
| TTCCGATCTCGATCACACAA+TGG | + | chr1_1:44143624-44143643 | Msa0023190:CDS | 45.0% | |
| GCGAACTATTCTCTGCATCA+TGG | - | chr1_1:44143891-44143910 | None:intergenic | 45.0% | |
| GCGATATGAAGCTTCCCAAA+GGG | - | chr1_1:44143929-44143948 | None:intergenic | 45.0% | |
| ATATCGCCACGATTCTTTGC+TGG | + | chr1_1:44143942-44143961 | Msa0023190:CDS | 45.0% | |
| AGAACACCAGCAAAGAATCG+TGG | - | chr1_1:44143951-44143970 | None:intergenic | 45.0% | |
| TCTTTGCTGGTGTTCTCAAC+TGG | + | chr1_1:44143955-44143974 | Msa0023190:CDS | 45.0% | |
| AAATCGATGGTTCCCGATGA+TGG | + | chr1_1:44144075-44144094 | Msa0023190:CDS | 45.0% | |
| TCTTGAACCCATCCATCATC+GGG | - | chr1_1:44144090-44144109 | None:intergenic | 45.0% | |
| CAATGTCCTTGTCCCATTTC+TGG | - | chr1_1:44144119-44144138 | None:intergenic | 45.0% | |
| GGACAAGGACATTGTCATTG+AGG | + | chr1_1:44144125-44144144 | Msa0023190:CDS | 45.0% | |
| GTTTCCTGAACTTAAGCCTC+AGG | + | chr1_1:44144158-44144177 | Msa0023190:CDS | 45.0% | |
| AGTACCTGAGGCTTAAGTTC+AGG | - | chr1_1:44144165-44144184 | None:intergenic | 45.0% | |
| AAGCCTCAGGTACTTTGAGT+AGG | + | chr1_1:44144171-44144190 | Msa0023190:intron | 45.0% | |
| TGCAGGCAGAAACAGAACAA+CGG | + | chr1_1:44144343-44144362 | Msa0023190:intron | 45.0% | |
| CAATGCTAAGCAAGTGACAG+AGG | + | chr1_1:44144398-44144417 | Msa0023190:CDS | 45.0% | |
| !!! | CTAAGATTTTGGAACAGCGC+GGG | + | chr1_1:44144427-44144446 | Msa0023190:CDS | 45.0% |
| !!! | TAAGATTTTGGAACAGCGCG+GGG | + | chr1_1:44144428-44144447 | Msa0023190:CDS | 45.0% |
| ! | ATATAGCGGAGGAGTTGACA+TGG | + | chr1_1:44144609-44144628 | Msa0023190:CDS | 45.0% |
| GACATATTACCACAAGGTGC+TGG | + | chr1_1:44144631-44144650 | Msa0023190:CDS | 45.0% | |
| ATTACCAGGTAGCTTTCCCT+CGG | - | chr1_1:44144698-44144717 | None:intergenic | 45.0% | |
| ! | ACTCTAGTTTGTGGTGACTC+CGG | + | chr1_1:44144718-44144737 | Msa0023190:CDS | 45.0% |
| GAATAGCTCGGCATCATTTC+CGG | - | chr1_1:44144740-44144759 | None:intergenic | 45.0% | |
| TCCTGGAATGCTGAATAGCT+CGG | - | chr1_1:44144752-44144771 | None:intergenic | 45.0% | |
| ! | TCCAGGAGTTTATGGTGTCA+TGG | + | chr1_1:44144765-44144784 | Msa0023190:CDS | 45.0% |
| ACCATGACACCATAAACTCC+TGG | - | chr1_1:44144769-44144788 | None:intergenic | 45.0% | |
| !! | GGAGTTTATGGTGTCATGGT+TGG | + | chr1_1:44144769-44144788 | Msa0023190:intron | 45.0% |
| CCACTGCAGTAATTCCTCTT+GGG | - | chr1_1:44144926-44144945 | None:intergenic | 45.0% | |
| CTGAGGCATGCAGAATCTTA+GGG | - | chr1_1:44144972-44144991 | None:intergenic | 45.0% | |
| ! | TCTGAGGCATGCAGAATCTT+AGG | - | chr1_1:44144973-44144992 | None:intergenic | 45.0% |
| ACGTGCAGAAGTTGAGAACT+CGG | + | chr1_1:44145152-44145171 | Msa0023190:CDS | 45.0% | |
| ACTGCACAAATGAGGTCCTT+CGG | - | chr1_1:44145441-44145460 | None:intergenic | 45.0% | |
| ACTTTAGTGCAGTTCACCCA+TGG | - | chr1_1:44145817-44145836 | None:intergenic | 45.0% | |
| GAGAATAGTCAGCACCAGAA+GGG | - | chr1_1:44146010-44146029 | None:intergenic | 45.0% | |
| AGAGAATAGTCAGCACCAGA+AGG | - | chr1_1:44146011-44146030 | None:intergenic | 45.0% | |
| TCTTAAAAACCACACCCCTC+CGG | + | chr1_1:44146443-44146462 | Msa0023190:intron | 45.0% | |
| TTTGGATGGGTAAATCCGGA+GGG | - | chr1_1:44146461-44146480 | None:intergenic | 45.0% | |
| TCCGGATTTACCCATCCAAA+CGG | + | chr1_1:44146461-44146480 | Msa0023190:intron | 45.0% | |
| !!! | AGCCGTGTTTTTTTCCCGTT+TGG | - | chr1_1:44146479-44146498 | None:intergenic | 45.0% |
| ! | ACGGCTTTTCTAACGTTGGA+TGG | + | chr1_1:44146493-44146512 | Msa0023190:intron | 45.0% |
| ! | CGGCTTTTCTAACGTTGGAT+GGG | + | chr1_1:44146494-44146513 | Msa0023190:intron | 45.0% |
| ! | TGGTGTTTTTCTGTCTGGAC+TGG | + | chr1_1:44146533-44146552 | Msa0023190:intron | 45.0% |
| ATGATGTGGGACTAACATGG+GGG | - | chr1_1:44146701-44146720 | None:intergenic | 45.0% | |
| GCAATGATGTGGGACTAACA+TGG | - | chr1_1:44146704-44146723 | None:intergenic | 45.0% | |
| GTGGCAAATGGCAATGATGT+GGG | - | chr1_1:44146714-44146733 | None:intergenic | 45.0% | |
| GTCTCTAGTATGGTGGCAAA+TGG | - | chr1_1:44146726-44146745 | None:intergenic | 45.0% | |
| TTTGCCACCATACTAGAGAC+TGG | + | chr1_1:44146726-44146745 | Msa0023190:intron | 45.0% | |
| CAAACCAGTCTCTAGTATGG+TGG | - | chr1_1:44146733-44146752 | None:intergenic | 45.0% | |
| AGGCAAACCAGTCTCTAGTA+TGG | - | chr1_1:44146736-44146755 | None:intergenic | 45.0% | |
| TTGGGTTTCAGGATTCCGAT+TGG | + | chr1_1:44147092-44147111 | Msa0023190:intron | 45.0% | |
| ATGCATCCAGGTGAACCAAT+CGG | - | chr1_1:44147110-44147129 | None:intergenic | 45.0% | |
| CAGATTGTTCCAACCATGAC+TGG | - | chr1_1:44147138-44147157 | None:intergenic | 45.0% | |
| TGGAACAATCTGACCATGAG+TGG | + | chr1_1:44147146-44147165 | Msa0023190:CDS | 45.0% | |
| CATGGGACACCTTGACATTA+TGG | - | chr1_1:44147276-44147295 | None:intergenic | 45.0% | |
| AGAAGAAGAAGGGTGGTGAG+TGG | - | chr1_1:44143023-44143042 | None:intergenic | 50.0% | |
| GGTAGTGAAGTGGAAGGGAA+GGG | - | chr1_1:44143056-44143075 | None:intergenic | 50.0% | |
| CTTCCCTTCCACTTCACTAC+CGG | + | chr1_1:44143055-44143074 | Msa0023190:five_prime_UTR | 50.0% | |
| AGGGGGGAAGAAGAAGAAGA+AGG | - | chr1_1:44143095-44143114 | None:intergenic | 50.0% | |
| GTGTCTGTGTCAGTGCTTCA+TGG | - | chr1_1:44143730-44143749 | None:intergenic | 50.0% | |
| TGTCAACGTGTCAGTGTGTC+TGG | - | chr1_1:44143758-44143777 | None:intergenic | 50.0% | |
| GGCGATATGAAGCTTCCCAA+AGG | - | chr1_1:44143930-44143949 | None:intergenic | 50.0% | |
| CTCAGTTCCCACAGACATGA+TGG | - | chr1_1:44144043-44144062 | None:intergenic | 50.0% | |
| !! | GATGGTTCCCGATGATGGAT+GGG | + | chr1_1:44144080-44144099 | Msa0023190:CDS | 50.0% |
| GCAGGCAGAAACAGAACAAC+GGG | + | chr1_1:44144344-44144363 | Msa0023190:intron | 50.0% | |
| !! | TTACCACAAGGTGCTGGCAA+AGG | + | chr1_1:44144637-44144656 | Msa0023190:CDS | 50.0% |
| CCCAAGAGGAATTACTGCAG+TGG | + | chr1_1:44144923-44144942 | Msa0023190:CDS | 50.0% | |
| GCCACTGCAGTAATTCCTCT+TGG | - | chr1_1:44144927-44144946 | None:intergenic | 50.0% | |
| CATCTCTTGGGGACAGGTTT+GGG | - | chr1_1:44145044-44145063 | None:intergenic | 50.0% | |
| ACATCTCTTGGGGACAGGTT+TGG | - | chr1_1:44145045-44145064 | None:intergenic | 50.0% | |
| CTGAAACATCTCTTGGGGAC+AGG | - | chr1_1:44145050-44145069 | None:intergenic | 50.0% | |
| CTGCACAAATGAGGTCCTTC+GGG | - | chr1_1:44145440-44145459 | None:intergenic | 50.0% | |
| GGGTGGATATACACACCAGA+TGG | - | chr1_1:44145990-44146009 | None:intergenic | 50.0% | |
| GGTGTGTATATCCACCCTTC+TGG | + | chr1_1:44145993-44146012 | Msa0023190:CDS | 50.0% | |
| AATAGTCAGCACCAGAAGGG+TGG | - | chr1_1:44146007-44146026 | None:intergenic | 50.0% | |
| GCCAACTTGCAGATGAAGAG+CGG | + | chr1_1:44146240-44146259 | Msa0023190:intron | 50.0% | |
| TTGGATGGGTAAATCCGGAG+GGG | - | chr1_1:44146460-44146479 | None:intergenic | 50.0% | |
| GTTTGGATGGGTAAATCCGG+AGG | - | chr1_1:44146462-44146481 | None:intergenic | 50.0% | |
| CCCGTTTGGATGGGTAAATC+CGG | - | chr1_1:44146465-44146484 | None:intergenic | 50.0% | |
| CCGGATTTACCCATCCAAAC+GGG | + | chr1_1:44146462-44146481 | Msa0023190:intron | 50.0% | |
| !! | TCTGTCTGGACTGGTAGACT+CGG | + | chr1_1:44146542-44146561 | Msa0023190:intron | 50.0% |
| GGTGGCAAATGGCAATGATG+TGG | - | chr1_1:44146715-44146734 | None:intergenic | 50.0% | |
| ! | AGGATTCCGATTGGTTCACC+TGG | + | chr1_1:44147101-44147120 | Msa0023190:intron | 50.0% |
| AAGAAGGGTGGTGAGTGGTG+AGG | - | chr1_1:44143018-44143037 | None:intergenic | 55.0% | |
| GTGAAGTGGAAGGGAAGGGA+AGG | - | chr1_1:44143052-44143071 | None:intergenic | 55.0% | |
| CGGTAGTGAAGTGGAAGGGA+AGG | - | chr1_1:44143057-44143076 | None:intergenic | 55.0% | |
| TGCTGGTGTTCTCAACTGGC+AGG | + | chr1_1:44143959-44143978 | Msa0023190:CDS | 55.0% | |
| !! | CGATGGTTCCCGATGATGGA+TGG | + | chr1_1:44144079-44144098 | Msa0023190:CDS | 55.0% |
| GCTAGCGAGTTCCTGATCCA+TGG | - | chr1_1:44144235-44144254 | None:intergenic | 55.0% | |
| TGACCTTTGCCAGCACCTTG+TGG | - | chr1_1:44144643-44144662 | None:intergenic | 55.0% | |
| GCCGAGCTATTCAGCATTCC+AGG | + | chr1_1:44144748-44144767 | Msa0023190:CDS | 55.0% | |
| GTAGGTAAGCAACGCCCAAG+AGG | + | chr1_1:44144909-44144928 | Msa0023190:intron | 55.0% | |
| !! | CCTCAGAGCGTTGTGCATCT+GGG | + | chr1_1:44144986-44145005 | Msa0023190:CDS | 55.0% |
| GCCGCTCTTCATCTGCAAGT+TGG | - | chr1_1:44146244-44146263 | None:intergenic | 55.0% | |
| CTTGCAGATGAAGAGCGGCA+TGG | + | chr1_1:44146245-44146264 | Msa0023190:intron | 55.0% | |
| TGACTGGTGCACATGCATCC+AGG | - | chr1_1:44147122-44147141 | None:intergenic | 55.0% | |
| GGATGCATGTGCACCAGTCA+TGG | + | chr1_1:44147122-44147141 | Msa0023190:CDS | 55.0% | |
| GCATGTGCACCAGTCATGGT+TGG | + | chr1_1:44147126-44147145 | Msa0023190:CDS | 55.0% | |
| GAGACCGAGGGAAAGCTACC+TGG | + | chr1_1:44144691-44144710 | Msa0023190:CDS | 60.0% | |
| !! | GCCTCAGAGCGTTGTGCATC+TGG | + | chr1_1:44144985-44145004 | Msa0023190:CDS | 60.0% |
| CCCAGATGCACAACGCTCTG+AGG | - | chr1_1:44144989-44145008 | None:intergenic | 60.0% | |
| TGGGTAAATCCGGAGGGGTG+TGG | - | chr1_1:44146455-44146474 | None:intergenic | 60.0% | |
| !! | CTGGACTGGTAGACTCGGAC+AGG | + | chr1_1:44146547-44146566 | Msa0023190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 44142891 | 44147495 | 44142891 | ID=Msa0023190;Name=Msa0023190 |
| chr1_1 | mRNA | 44142891 | 44147495 | 44142891 | ID=Msa0023190-mRNA-1;Parent=Msa0023190;Name=Msa0023190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|0.87|0.77|9|318|418 |
| chr1_1 | exon | 44142891 | 44143076 | 44142891 | ID=Msa0023190-mRNA-1:exon:12683;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44143563 | 44143645 | 44143563 | ID=Msa0023190-mRNA-1:exon:12684;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44143880 | 44144179 | 44143880 | ID=Msa0023190-mRNA-1:exon:12685;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44144348 | 44144449 | 44144348 | ID=Msa0023190-mRNA-1:exon:12686;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44144592 | 44144786 | 44144592 | ID=Msa0023190-mRNA-1:exon:12687;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44144913 | 44145206 | 44144913 | ID=Msa0023190-mRNA-1:exon:12688;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44145984 | 44146170 | 44145984 | ID=Msa0023190-mRNA-1:exon:12689;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44146252 | 44146295 | 44146252 | ID=Msa0023190-mRNA-1:exon:12690;Parent=Msa0023190-mRNA-1 |
| chr1_1 | exon | 44147103 | 44147495 | 44147103 | ID=Msa0023190-mRNA-1:exon:12691;Parent=Msa0023190-mRNA-1 |
| chr1_1 | five_prime_UTR | 44142891 | 44143076 | 44142891 | ID=Msa0023190-mRNA-1:five_prime_utr;Parent=Msa0023190-mRNA-1 |
| chr1_1 | five_prime_UTR | 44143563 | 44143585 | 44143563 | ID=Msa0023190-mRNA-1:five_prime_utr;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44143586 | 44143645 | 44143586 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44143880 | 44144179 | 44143880 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44144348 | 44144449 | 44144348 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44144592 | 44144786 | 44144592 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44144913 | 44145206 | 44144913 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44145984 | 44146170 | 44145984 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44146252 | 44146295 | 44146252 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | CDS | 44147103 | 44147177 | 44147103 | ID=Msa0023190-mRNA-1:cds;Parent=Msa0023190-mRNA-1 |
| chr1_1 | three_prime_UTR | 44147178 | 44147495 | 44147178 | ID=Msa0023190-mRNA-1:three_prime_utr;Parent=Msa0023190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
