AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128840 MtrunA17_Chr1g0195451 97.807 456 10 0 1 456 1 456 0.0 909
Msa0128840 MtrunA17_Chr3g0138841 35.977 353 185 9 105 439 83 412 8.02e-59 203
Msa0128840 MtrunA17_Chr4g0003821 26.404 356 198 10 111 440 6 323 8.82e-20 92.0
Msa0128840 MtrunA17_Chr4g0018641 30.412 194 121 4 119 311 38 218 2.44e-18 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128840 AT2G47590.1 69.444 432 112 5 29 456 32 447 0.0 566
Msa0128840 AT5G24850.1 38.138 333 176 9 110 435 73 382 5.18e-65 219
Msa0128840 AT3G15620.2 27.410 332 208 8 109 429 15 324 4.54e-20 92.8
Msa0128840 AT3G15620.1 27.893 337 200 9 109 429 15 324 6.48e-20 92.8
Msa0128840 AT4G25290.1 28.986 207 122 7 111 311 28 215 6.05e-13 71.6

Find 167 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTACTTTAAGCTTAT+TGG 0.135446 1_3:-58685941 None:intergenic
GTTGAATTGGCGAAGGAAAT+TGG 0.181084 1_3:+58686387 Msa0128840:CDS
TGATAGTAAAGATGGGATTT+TGG 0.196469 1_3:-58685908 None:intergenic
TTGATTATGGAGCATTAATT+AGG 0.204657 1_3:-58690118 None:intergenic
AGAAGCTTCAAGTTTGATTA+TGG 0.215901 1_3:-58690131 None:intergenic
GATCTATGGTCCAGAATTTA+TGG 0.216381 1_3:+58689921 Msa0128840:three_prime_UTR
TAGAGATAGAGTTCAGAAAT+TGG 0.229601 1_3:+58686590 Msa0128840:CDS
GAGGATATGCCTTCAAATTA+TGG 0.232389 1_3:+58686561 Msa0128840:CDS
GTTGGTACTTTAAGCTTATT+GGG 0.245968 1_3:-58685940 None:intergenic
TCAACCAAACAAGGGGTTTA+AGG 0.252150 1_3:+58687527 Msa0128840:CDS
TGCTATGGAGGGACTTCTTT+AGG 0.263132 1_3:+58687824 Msa0128840:CDS
CTCTGGTGGTGTTTGGTTGT+TGG 0.268353 1_3:-58685782 None:intergenic
CAACCAATTAGTTCCAGTTT+TGG 0.285317 1_3:-58687791 None:intergenic
CATCCTCAATTCAAACAAAA+TGG 0.286670 1_3:+58685756 Msa0128840:exon
AGTAGGACGGTGAGGGATTA+AGG 0.295386 1_3:-58686076 None:intergenic
CATCCAAAACTGGAACTAAT+TGG 0.299631 1_3:+58687788 Msa0128840:CDS
TGGTGATATTCCTACTTTGA+TGG 0.311634 1_3:+58686680 Msa0128840:CDS
ACAGAAACACCCCTTCAATA+AGG 0.315520 1_3:-58690183 None:intergenic
GGAGGAGAGAGGAGAGAGAA+AGG 0.315575 1_3:-58685873 None:intergenic
TTGTTCATCTTACTATGTTA+TGG 0.315772 1_3:+58690094 Msa0128840:three_prime_UTR
TTGAATCGGTTTCGGATCTT+AGG 0.318994 1_3:+58686301 Msa0128840:CDS
TGGGAAGCCGGAGACGGTTT+TGG 0.320562 1_3:+58686365 Msa0128840:CDS
TGAGGCTTTGGATCAACTTA+AGG 0.322436 1_3:+58686629 Msa0128840:CDS
TGAGGAAGAGCCATAAATTC+TGG 0.334279 1_3:-58689931 None:intergenic
AAGGAAAACTATTGAGGCTT+TGG 0.339052 1_3:+58686617 Msa0128840:CDS
CCATCCTTAAACCCCTTGTT+TGG 0.346676 1_3:-58687531 None:intergenic
TTGAATTGGCGAAGGAAATT+GGG 0.347653 1_3:+58686388 Msa0128840:CDS
CTTAAGCTACAAGTTTCATA+TGG 0.349075 1_3:+58689702 Msa0128840:exon
TGAGGATTTGCCGTTTAGTT+TGG 0.357273 1_3:+58686539 Msa0128840:CDS
TCTGGTGGTGTTTGGTTGTT+GGG 0.358189 1_3:-58685781 None:intergenic
TCTCTTTCTCTGGTGGTGTT+TGG 0.362699 1_3:-58685789 None:intergenic
GATTATGGGAAATCTTCATC+TGG 0.364632 1_3:+58686240 Msa0128840:CDS
TGATTATGGAGCATTAATTA+GGG 0.367147 1_3:-58690117 None:intergenic
CTTCTTCCGCCGCTGCTCTT+CGG 0.373965 1_3:+58686103 Msa0128840:CDS
GAGGCTTTGGATCAACTTAA+GGG 0.374049 1_3:+58686630 Msa0128840:CDS
GCAATCACATTATATCAATA+TGG 0.374605 1_3:+58689790 Msa0128840:three_prime_UTR
TGCTCCAGCCACTGCTTGTA+CGG 0.374998 1_3:+58689670 Msa0128840:CDS
TTCGGAGAACCGCCATTGTT+TGG 0.378423 1_3:+58686121 Msa0128840:CDS
AGGTTGAGATTCTCTTTCTC+TGG 0.381169 1_3:-58685799 None:intergenic
TCCTCAATAACACGATACTT+TGG 0.396953 1_3:+58689948 Msa0128840:three_prime_UTR
GGATCTTAGGAAGAATCTTA+AGG 0.401605 1_3:+58686314 Msa0128840:CDS
GGGGCACAAGATAGTATATA+TGG 0.403980 1_3:+58687552 Msa0128840:CDS
TCATCTGGGTTTGATAAAAC+AGG 0.408572 1_3:+58686255 Msa0128840:CDS
CCTCAATAACACGATACTTT+GGG 0.412537 1_3:+58689949 Msa0128840:three_prime_UTR
TTTGTTGGAAGGGGAAGAAT+GGG 0.416847 1_3:-58686004 None:intergenic
GATGGTGGCTCATCCAAAAC+TGG 0.418194 1_3:+58687778 Msa0128840:CDS
GGAAGGGGAAGAATGGGTTT+TGG 0.423682 1_3:-58685998 None:intergenic
GGTGGTGGAAGCGGTGGTTC+CGG 0.424545 1_3:-58685832 None:intergenic
AGATGGAGGAGAAGATTGAA+GGG 0.424911 1_3:+58686457 Msa0128840:CDS
CGGATCTTGTGGTGAGAGTT+GGG 0.432143 1_3:+58686346 Msa0128840:CDS
GCAGGATCAAAACAATAAAC+AGG 0.432831 1_3:-58686216 None:intergenic
CTAAAACCACCATAATTTGA+AGG 0.437906 1_3:-58686570 None:intergenic
CGAAGAGCAGCGGCGGAAGA+AGG 0.444187 1_3:-58686102 None:intergenic
GGAAGCGGTGGTTCCGGTGA+GGG 0.445826 1_3:-58685826 None:intergenic
CAGAAACACCCCTTCAATAA+GGG 0.446870 1_3:-58690182 None:intergenic
TATTAGTGTTCCCTTATTGA+AGG 0.449077 1_3:+58690172 Msa0128840:three_prime_UTR
AGGAGAGTGGTGATTTGAGA+GGG 0.452904 1_3:-58686056 None:intergenic
TTCAATGTGTGTGGTTTGGA+TGG 0.461131 1_3:-58685625 None:intergenic
ATTCCTACTTTGATGGACCT+TGG 0.462040 1_3:+58686687 Msa0128840:CDS
GAGTTCAGAAATTGGAGATA+AGG 0.462142 1_3:+58686598 Msa0128840:CDS
GAAGATGAAGGAGGAGAATG+TGG 0.462554 1_3:+58686479 Msa0128840:CDS
ACTTTAAGCTTATTGGGTGG+TGG 0.462910 1_3:-58685934 None:intergenic
GCTCCAGCCACTGCTTGTAC+GGG 0.464062 1_3:+58689671 Msa0128840:CDS
GAGGAGAGAGGAGAGAGAAA+GGG 0.465168 1_3:-58685872 None:intergenic
ATTAGTGTTCCCTTATTGAA+GGG 0.467319 1_3:+58690173 Msa0128840:three_prime_UTR
GGCATATCCTCCAAACTAAA+CGG 0.469033 1_3:-58686549 None:intergenic
TAGTTCTACTAAGAAACAAC+TGG 0.469217 1_3:+58689643 Msa0128840:CDS
GCAAGTGACGGTGGTGGAAG+CGG 0.469751 1_3:-58685841 None:intergenic
AATTTCTCCATGGTTGGCAA+TGG 0.472113 1_3:+58687593 Msa0128840:CDS
ATTTCTCCATGGTTGGCAAT+GGG 0.474742 1_3:+58687594 Msa0128840:CDS
AAGGAGAGTGGTGATTTGAG+AGG 0.475617 1_3:-58686057 None:intergenic
AAGATGGAGGAGAAGATTGA+AGG 0.477202 1_3:+58686456 Msa0128840:CDS
ATGCAAAATTTCTCCATGGT+TGG 0.479998 1_3:+58687587 Msa0128840:CDS
TTCTCATGATGAGGTGAAGA+TGG 0.481763 1_3:+58686440 Msa0128840:CDS
CCAAACAAGGGGTTTAAGGA+TGG 0.482113 1_3:+58687531 Msa0128840:CDS
ACAGAGGCTTAAAAGATTTG+CGG 0.483489 1_3:+58687491 Msa0128840:CDS
GGATTTGCCGTTTAGTTTGG+AGG 0.485893 1_3:+58686542 Msa0128840:CDS
AATTCAACCAAAACCGTCTC+CGG 0.486723 1_3:-58686372 None:intergenic
TCGGATCTTGTGGTGAGAGT+TGG 0.490430 1_3:+58686345 Msa0128840:CDS
GAAGATTGAAGGGAAGATGA+AGG 0.498110 1_3:+58686467 Msa0128840:CDS
TTGGAATAAAGGGAGGAGAG+AGG 0.500643 1_3:-58685884 None:intergenic
AGGAAGAATCTTAAGGCAAG+AGG 0.500841 1_3:+58686321 Msa0128840:CDS
GGTGGTGGTGATAGTAAAGA+TGG 0.501732 1_3:-58685916 None:intergenic
TTCAGTCTCCCCTCCTGTCA+TGG 0.502535 1_3:-58687463 None:intergenic
AGAGAAGCAAGTGACGGTGG+TGG 0.502601 1_3:-58685847 None:intergenic
ATGAGTGAGTGATGAAGCTT+GGG 0.503400 1_3:-58685962 None:intergenic
GGTTGATGTTTGAGTTGCTA+TGG 0.503481 1_3:+58687809 Msa0128840:CDS
TATCTGTTACCTACTACCAC+TGG 0.503676 1_3:-58685727 None:intergenic
CATGAACACGAAGATCATTA+CGG 0.504071 1_3:-58686146 None:intergenic
GATGAGTGAGTGATGAAGCT+TGG 0.512379 1_3:-58685963 None:intergenic
GGAGATAAGGAAAACTATTG+AGG 0.512912 1_3:+58686611 Msa0128840:CDS
TTGAGATTCTCTTTCTCTGG+TGG 0.519022 1_3:-58685796 None:intergenic
TATTGAAGGGGTGTTTCTGT+TGG 0.519103 1_3:+58690186 Msa0128840:three_prime_UTR
CCCAAAGTATCGTGTTATTG+AGG 0.520052 1_3:-58689949 None:intergenic
TTAAGCTTATTGGGTGGTGG+TGG 0.520554 1_3:-58685931 None:intergenic
CAGCTCATCAAACATTGCGC+GGG 0.522820 1_3:-58687628 None:intergenic
TGTGGTGAGAGTTGGGAAGC+CGG 0.527613 1_3:+58686353 Msa0128840:CDS
CGGTGAGGGATTAAGGAGAG+TGG 0.528589 1_3:-58686069 None:intergenic
GGCAAGAGGGTCGGATCTTG+TGG 0.529684 1_3:+58686335 Msa0128840:CDS
TCCATCTGCCACAATGTCAC+AGG 0.531575 1_3:+58686716 Msa0128840:CDS
AGACCAAGGTCCATCAAAGT+AGG 0.537251 1_3:-58686690 None:intergenic
AAGTACTTTGTATCATGTTG+AGG 0.538060 1_3:+58686521 Msa0128840:CDS
GTGTCTAATTCTTCCATGAC+AGG 0.539757 1_3:+58687450 Msa0128840:CDS
ATTATGGGAAATCTTCATCT+GGG 0.540323 1_3:+58686241 Msa0128840:CDS
ACCTGTGACATTGTGGCAGA+TGG 0.543053 1_3:-58686717 None:intergenic
TTTCATGCAAAATTTCTCCA+TGG 0.544798 1_3:+58687583 Msa0128840:CDS
GAAGATTTCCCATAATCAGC+AGG 0.545258 1_3:-58686234 None:intergenic
TTAGTGTTCCCTTATTGAAG+GGG 0.546127 1_3:+58690174 Msa0128840:three_prime_UTR
GCACCCGTACAAGCAGTGGC+TGG 0.547932 1_3:-58689674 None:intergenic
CTCATCAAACATTGCGCGGG+GGG 0.548029 1_3:-58687625 None:intergenic
TCTCAACCTCACACCCTCAC+CGG 0.549207 1_3:+58685813 Msa0128840:CDS
AGGCATCCCATTGCCAACCA+TGG 0.557353 1_3:-58687600 None:intergenic
TGGAAGCGGTGGTTCCGGTG+AGG 0.557500 1_3:-58685827 None:intergenic
GTGTGAAGCTCAACCAAACA+AGG 0.558520 1_3:+58687518 Msa0128840:CDS
GAAGAGCAGCGGCGGAAGAA+GGG 0.560143 1_3:-58686101 None:intergenic
GCGGCGGAAGAAGGGTCAGT+AGG 0.561786 1_3:-58686093 None:intergenic
GTGGTTCCGGTGAGGGTGTG+AGG 0.562859 1_3:-58685819 None:intergenic
AGCTGAAGAAAACTGCCAGC+AGG 0.564000 1_3:+58687646 Msa0128840:CDS
CAAACAAGGGGTTTAAGGAT+GGG 0.566462 1_3:+58687532 Msa0128840:CDS
TAAGTTGTGAAGAATAAAGG+AGG 0.568916 1_3:+58690056 Msa0128840:three_prime_UTR
TGAATTGGCGAAGGAAATTG+GGG 0.569351 1_3:+58686389 Msa0128840:CDS
AAGCGCACCCGTACAAGCAG+TGG 0.573556 1_3:-58689678 None:intergenic
TCTCGTGGTGATGTTCAACT+TGG 0.575493 1_3:+58686660 Msa0128840:CDS
AGTGACGGTGGTGGAAGCGG+TGG 0.577411 1_3:-58685838 None:intergenic
TCAGCTCATCAAACATTGCG+CGG 0.578227 1_3:-58687629 None:intergenic
GTTGAACATCACCACGAGAA+GGG 0.578806 1_3:-58686656 None:intergenic
GAGAGTTGGGAAGCCGGAGA+CGG 0.579515 1_3:+58686359 Msa0128840:CDS
GAAGGGTCAGTAGGACGGTG+AGG 0.584070 1_3:-58686084 None:intergenic
AAACAAGGGGTTTAAGGATG+GGG 0.584425 1_3:+58687533 Msa0128840:CDS
GATGTTTGAGTTGCTATGGA+GGG 0.589463 1_3:+58687813 Msa0128840:CDS
GATTGAAGGGAAGATGAAGG+AGG 0.593083 1_3:+58686470 Msa0128840:CDS
TGATGTTTGAGTTGCTATGG+AGG 0.595257 1_3:+58687812 Msa0128840:CDS
TGCTGTGTATTGTCATAGAG+AGG 0.595822 1_3:+58686416 Msa0128840:CDS
AGTTGAACATCACCACGAGA+AGG 0.598738 1_3:-58686657 None:intergenic
AGCTCATCAAACATTGCGCG+GGG 0.598803 1_3:-58687627 None:intergenic
GGCGGTTCTCCGAAGAGCAG+CGG 0.599963 1_3:-58686112 None:intergenic
ACATACAACAGAACTTGTGA+AGG 0.600612 1_3:-58689761 None:intergenic
CGGAAGAAGGGTCAGTAGGA+CGG 0.602620 1_3:-58686089 None:intergenic
GATATGCCTTCAAATTATGG+TGG 0.605212 1_3:+58686564 Msa0128840:CDS
GGTACTTTAAGCTTATTGGG+TGG 0.607149 1_3:-58685937 None:intergenic
AAGGGTCAGTAGGACGGTGA+GGG 0.610539 1_3:-58686083 None:intergenic
ATAGATCTAGTTAGAAAAGA+CGG 0.611599 1_3:-58689905 None:intergenic
CTAATTCTTCCATGACAGGA+GGG 0.614699 1_3:+58687454 Msa0128840:CDS
GAATCTTAAGGCAAGAGGGT+CGG 0.615487 1_3:+58686326 Msa0128840:CDS
TAGAGAGGTTTCTCATGATG+AGG 0.616362 1_3:+58686431 Msa0128840:CDS
TAATTCTTCCATGACAGGAG+GGG 0.617885 1_3:+58687455 Msa0128840:CDS
GATGAAGGAGGAGAATGTGG+AGG 0.618082 1_3:+58686482 Msa0128840:CDS
GGTTCTCCGAAGAGCAGCGG+CGG 0.624520 1_3:-58686109 None:intergenic
GTGGTGGTGATAGTAAAGAT+GGG 0.627435 1_3:-58685915 None:intergenic
CTTAAGGGTCTCCCTTCTCG+TGG 0.627746 1_3:+58686645 Msa0128840:CDS
GAGAGAGAAGCAAGTGACGG+TGG 0.630808 1_3:-58685850 None:intergenic
TCTAATTCTTCCATGACAGG+AGG 0.636840 1_3:+58687453 Msa0128840:CDS
ATCATTACGGAACCAAACAA+TGG 0.638151 1_3:-58686133 None:intergenic
CATACAACAGAACTTGTGAA+GGG 0.641338 1_3:-58689760 None:intergenic
GGAAGAATCTTAAGGCAAGA+GGG 0.642727 1_3:+58686322 Msa0128840:CDS
AGGGAGAGAGAAGCAAGTGA+CGG 0.649765 1_3:-58685853 None:intergenic
GTCATGGAAGAATTAGACAC+TGG 0.650273 1_3:-58687447 None:intergenic
TGGCAGATGGATTAAGACCA+AGG 0.660136 1_3:-58686704 None:intergenic
TCATGATGAGGTGAAGATGG+AGG 0.660818 1_3:+58686443 Msa0128840:CDS
ATACAACAGAACTTGTGAAG+GGG 0.661152 1_3:-58689759 None:intergenic
GTGAAGCTCAACCAAACAAG+GGG 0.664067 1_3:+58687520 Msa0128840:CDS
TGTGAAGCTCAACCAAACAA+GGG 0.674233 1_3:+58687519 Msa0128840:CDS
GTGAGTGATGAAGCTTGGGT+TGG 0.675328 1_3:-58685958 None:intergenic
ATTGGCGAAGGAAATTGGGG+CGG 0.682178 1_3:+58686392 Msa0128840:CDS
GGGAGACTGAAGCACTACAG+AGG 0.688139 1_3:+58687475 Msa0128840:CDS
GCTCATCAAACATTGCGCGG+GGG 0.698836 1_3:-58687626 None:intergenic
ATTACGGAACCAAACAATGG+CGG 0.734414 1_3:-58686130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTGTTTAAAAATATT+AGG + chr1_3:58687683-58687702 Msa0128840:intron 10.0%
!! AAATACATTTAAAAAAGTTA+TGG - chr1_3:58688072-58688091 None:intergenic 10.0%
!!! TTATTTTCTCAAATTATTAC+TGG - chr1_3:58686884-58686903 None:intergenic 15.0%
!! AAAGTTATAACTTTCTAATT+AGG - chr1_3:58687951-58687970 None:intergenic 15.0%
!! TAAGAAATATTATTATGATG+CGG + chr1_3:58689252-58689271 Msa0128840:intron 15.0%
!! TGTTAAAATCTAATTTGATT+AGG - chr1_3:58689469-58689488 None:intergenic 15.0%
!!! AAGCTTTTTACATTATTTTT+TGG + chr1_3:58689813-58689832 Msa0128840:three_prime_UTR 15.0%
!!! TTTTTACATTATTTTTTGGA+TGG + chr1_3:58689817-58689836 Msa0128840:three_prime_UTR 15.0%
!!! TGAAAAAGAAGATTTTTTGA+AGG - chr1_3:58686031-58686050 None:intergenic 20.0%
!! TCTTTGATTAGATTGTATAT+TGG + chr1_3:58687026-58687045 Msa0128840:intron 20.0%
!!! GTTATGGAATTTAGTTTTAA+TGG + chr1_3:58687066-58687085 Msa0128840:intron 20.0%
!!! TTTTAAACAGAAAAACATCT+GGG - chr1_3:58687678-58687697 None:intergenic 20.0%
!!! TTTTTAAACAGAAAAACATC+TGG - chr1_3:58687679-58687698 None:intergenic 20.0%
!!! TTTTCTTTTCCCAAAATATA+CGG + chr1_3:58687893-58687912 Msa0128840:intron 20.0%
!!! ACATGTTTAAATCTTTAAAG+AGG - chr1_3:58688253-58688272 None:intergenic 20.0%
!! CGGTTAATTTATTTAACAAT+AGG + chr1_3:58688295-58688314 Msa0128840:intron 20.0%
!! ACATTATTACAAACTAAACT+AGG + chr1_3:58688336-58688355 Msa0128840:intron 20.0%
!!! TTTTGAGTTTTCATTGTATT+AGG + chr1_3:58688752-58688771 Msa0128840:intron 20.0%
!!! TCATTACTTTTAAGATTTGA+TGG + chr1_3:58689043-58689062 Msa0128840:intron 20.0%
!!! CATTACTTTTAAGATTTGAT+GGG + chr1_3:58689044-58689063 Msa0128840:intron 20.0%
!! AAAAGATTTAAATGGTAAGT+AGG + chr1_3:58689078-58689097 Msa0128840:intron 20.0%
!! AAAGATTTAAATGGTAAGTA+GGG + chr1_3:58689079-58689098 Msa0128840:intron 20.0%
!! AGATATAGAGAAAATATGAT+CGG - chr1_3:58689211-58689230 None:intergenic 20.0%
!!! ATATTTTTTGGTAATAAACC+TGG - chr1_3:58689624-58689643 None:intergenic 20.0%
!!! CTTAGTAGAACTATATTTTT+TGG - chr1_3:58689636-58689655 None:intergenic 20.0%
!!! TTTTAAGTTGTGAAGAATAA+AGG + chr1_3:58690053-58690072 Msa0128840:three_prime_UTR 20.0%
!!! TGTAATCATCACTTTTTTCA+GGG - chr1_3:58685594-58685613 None:intergenic 25.0%
!!! ACAGTTAACAACCTTATTTT+TGG + chr1_3:58685671-58685690 Msa0128840:five_prime_UTR 25.0%
! AGATAGAGTAACCAAAAATA+AGG - chr1_3:58685685-58685704 None:intergenic 25.0%
!!! AGATTTTTTGAAGGTTTTGT+TGG - chr1_3:58686022-58686041 None:intergenic 25.0%
!!! TGCTAGTTTTTTGATTGAAT+CGG + chr1_3:58686287-58686306 Msa0128840:CDS 25.0%
!!! TTTTTTGATTGAATCGGTTT+CGG + chr1_3:58686293-58686312 Msa0128840:CDS 25.0%
! TGTAATCATAATGTGTTTCA+TGG + chr1_3:58686828-58686847 Msa0128840:intron 25.0%
!!! ATGGAATTTAGTTTTAATGG+AGG + chr1_3:58687069-58687088 Msa0128840:intron 25.0%
!!! TGGAATTTAGTTTTAATGGA+GGG + chr1_3:58687070-58687089 Msa0128840:intron 25.0%
! AAAAAGATTTCCTTTCACAA+TGG + chr1_3:58687150-58687169 Msa0128840:intron 25.0%
!! AGAAATTTTGCATGAAAAGT+TGG - chr1_3:58687580-58687599 None:intergenic 25.0%
!! TAGTTTTCTCCGTATATTTT+GGG - chr1_3:58687905-58687924 None:intergenic 25.0%
! TTTATCATAGTAGTGTATGA+TGG + chr1_3:58687988-58688007 Msa0128840:intron 25.0%
! TTATCATAGTAGTGTATGAT+GGG + chr1_3:58687989-58688008 Msa0128840:intron 25.0%
! CCTAATTTAATGAATAAGTC+TGG - chr1_3:58688049-58688068 None:intergenic 25.0%
! CCAGACTTATTCATTAAATT+AGG + chr1_3:58688046-58688065 Msa0128840:intron 25.0%
! AAAGAAAAAAAAAAAGCCAG+CGG - chr1_3:58688833-58688852 None:intergenic 25.0%
! AGAACAAAAAGAAGTAGAAA+AGG - chr1_3:58688877-58688896 None:intergenic 25.0%
! CTGTCTGAAAAAGATTTAAA+TGG + chr1_3:58689070-58689089 Msa0128840:intron 25.0%
! ATTATTATGATGCGGTAAAA+TGG + chr1_3:58689260-58689279 Msa0128840:intron 25.0%
! TTATTATGATGCGGTAAAAT+GGG + chr1_3:58689261-58689280 Msa0128840:intron 25.0%
!!! ATTGTTATGGATTTAGTTCT+AGG + chr1_3:58689380-58689399 Msa0128840:intron 25.0%
!!! TTGTTATGGATTTAGTTCTA+GGG + chr1_3:58689381-58689400 Msa0128840:intron 25.0%
!! GTGTTTAGTGATAAAAGTTT+TGG - chr1_3:58689562-58689581 None:intergenic 25.0%
! GCAATCACATTATATCAATA+TGG + chr1_3:58689790-58689809 Msa0128840:three_prime_UTR 25.0%
!!! TTCAGAACAACACTTTTTTA+AGG - chr1_3:58689864-58689883 None:intergenic 25.0%
! ATAGATCTAGTTAGAAAAGA+CGG - chr1_3:58689908-58689927 None:intergenic 25.0%
! TTGTTCATCTTACTATGTTA+TGG + chr1_3:58690094-58690113 Msa0128840:three_prime_UTR 25.0%
!! TGATTATGGAGCATTAATTA+GGG - chr1_3:58690120-58690139 None:intergenic 25.0%
!! TTGATTATGGAGCATTAATT+AGG - chr1_3:58690121-58690140 None:intergenic 25.0%
!!! GTGTAATCATCACTTTTTTC+AGG - chr1_3:58685595-58685614 None:intergenic 30.0%
CATCCTCAATTCAAACAAAA+TGG + chr1_3:58685756-58685775 Msa0128840:exon 30.0%
!! GTTCCATTTTGTTTGAATTG+AGG - chr1_3:58685762-58685781 None:intergenic 30.0%
! GATAGTAAAGATGGGATTTT+GGG - chr1_3:58685910-58685929 None:intergenic 30.0%
! TGATAGTAAAGATGGGATTT+TGG - chr1_3:58685911-58685930 None:intergenic 30.0%
GTTGGTACTTTAAGCTTATT+GGG - chr1_3:58685943-58685962 None:intergenic 30.0%
!!! TTTTGAAGGTTTTGTTGGAA+GGG - chr1_3:58686017-58686036 None:intergenic 30.0%
!!! TTTTTGAAGGTTTTGTTGGA+AGG - chr1_3:58686018-58686037 None:intergenic 30.0%
ATTATGGGAAATCTTCATCT+GGG + chr1_3:58686241-58686260 Msa0128840:CDS 30.0%
ATCAAAAAACTAGCACGATA+AGG - chr1_3:58686282-58686301 None:intergenic 30.0%
AAGTACTTTGTATCATGTTG+AGG + chr1_3:58686521-58686540 Msa0128840:CDS 30.0%
CTAAAACCACCATAATTTGA+AGG - chr1_3:58686573-58686592 None:intergenic 30.0%
TAGAGATAGAGTTCAGAAAT+TGG + chr1_3:58686590-58686609 Msa0128840:CDS 30.0%
!!! TTGTTTGTTTTATGCTGCAT+TGG + chr1_3:58686779-58686798 Msa0128840:intron 30.0%
!!! AATTTAGTTTTAATGGAGGG+AGG + chr1_3:58687073-58687092 Msa0128840:intron 30.0%
AATATATCAGCCATTGTGAA+AGG - chr1_3:58687163-58687182 None:intergenic 30.0%
TTTCACAATGGCTGATATAT+TGG + chr1_3:58687162-58687181 Msa0128840:intron 30.0%
TTCACAATGGCTGATATATT+GGG + chr1_3:58687163-58687182 Msa0128840:intron 30.0%
! TGAATCTGTTGATGAAAAGT+AGG + chr1_3:58687243-58687262 Msa0128840:intron 30.0%
AAGTACTAGATATCTTTGTC+TGG + chr1_3:58687284-58687303 Msa0128840:intron 30.0%
AGTACTAGATATCTTTGTCT+GGG + chr1_3:58687285-58687304 Msa0128840:intron 30.0%
CGTCAACAATGAATCTATAT+TGG + chr1_3:58687399-58687418 Msa0128840:intron 30.0%
TTTCATGCAAAATTTCTCCA+TGG + chr1_3:58687583-58687602 Msa0128840:CDS 30.0%
AATTCATCAGTGAGTATTCA+TGG - chr1_3:58687717-58687736 None:intergenic 30.0%
!! ATCATTTTTGCTTGATGAAG+CGG - chr1_3:58687761-58687780 None:intergenic 30.0%
!! CTAGTTTTCTCCGTATATTT+TGG - chr1_3:58687906-58687925 None:intergenic 30.0%
TCATATTTACATGAACTGAC+TGG - chr1_3:58688147-58688166 None:intergenic 30.0%
TACAAACTAAACTAGGCTTT+CGG + chr1_3:58688343-58688362 Msa0128840:intron 30.0%
!! CTAGCTTGTTTATCTAGTAT+AGG - chr1_3:58688393-58688412 None:intergenic 30.0%
ATGAGTTCTGTACTTACAAT+TGG - chr1_3:58688605-58688624 None:intergenic 30.0%
ACGAAAAGGAAATTCTGTAA+TGG - chr1_3:58688658-58688677 None:intergenic 30.0%
AAACTCAAAACCTGAAAGTT+TGG - chr1_3:58688742-58688761 None:intergenic 30.0%
!! TACTGTTTTGTTGCCTTTTT+TGG + chr1_3:58688781-58688800 Msa0128840:intron 30.0%
!! ACTGTTTTGTTGCCTTTTTT+GGG + chr1_3:58688782-58688801 Msa0128840:intron 30.0%
AAAAGGACTTGCAATAGTTT+GGG - chr1_3:58688860-58688879 None:intergenic 30.0%
! AACGATTAACCTTTCTAGTA+TGG + chr1_3:58689013-58689032 Msa0128840:intron 30.0%
GATTCAAAACCATACTAGAA+AGG - chr1_3:58689025-58689044 None:intergenic 30.0%
TTAAATGGTAAGTAGGGATA+TGG + chr1_3:58689085-58689104 Msa0128840:intron 30.0%
TATTATGATGCGGTAAAATG+GGG + chr1_3:58689262-58689281 Msa0128840:intron 30.0%
GTAAAATGGGGAAATATGAA+CGG + chr1_3:58689274-58689293 Msa0128840:intron 30.0%
CTAAATCCATAACAATGAGA+AGG - chr1_3:58689376-58689395 None:intergenic 30.0%
!! TAGTTCTAGGGAAAATTGAT+TGG + chr1_3:58689393-58689412 Msa0128840:intron 30.0%
!! AGTTCTAGGGAAAATTGATT+GGG + chr1_3:58689394-58689413 Msa0128840:intron 30.0%
AACTTCACAGTTGAATTTGT+GGG - chr1_3:58689538-58689557 None:intergenic 30.0%
AAACTTCACAGTTGAATTTG+TGG - chr1_3:58689539-58689558 None:intergenic 30.0%
! TAGTTCTACTAAGAAACAAC+TGG + chr1_3:58689643-58689662 Msa0128840:CDS 30.0%
CTTAAGCTACAAGTTTCATA+TGG + chr1_3:58689702-58689721 Msa0128840:exon 30.0%
! GTCTTTTCTAACTAGATCTA+TGG + chr1_3:58689907-58689926 Msa0128840:three_prime_UTR 30.0%
TGGGAGAGAAATTTGAAAAA+TGG + chr1_3:58689968-58689987 Msa0128840:three_prime_UTR 30.0%
GGGAGAGAAATTTGAAAAAT+GGG + chr1_3:58689969-58689988 Msa0128840:three_prime_UTR 30.0%
TAAGTTGTGAAGAATAAAGG+AGG + chr1_3:58690056-58690075 Msa0128840:three_prime_UTR 30.0%
! AGAAGCTTCAAGTTTGATTA+TGG - chr1_3:58690134-58690153 None:intergenic 30.0%
TATTAGTGTTCCCTTATTGA+AGG + chr1_3:58690172-58690191 Msa0128840:three_prime_UTR 30.0%
ATTAGTGTTCCCTTATTGAA+GGG + chr1_3:58690173-58690192 Msa0128840:three_prime_UTR 30.0%
!!! CTTTTTCAATGTGTGTGGTT+TGG - chr1_3:58685632-58685651 None:intergenic 35.0%
!!! ACTGTCTTTTTCAATGTGTG+TGG - chr1_3:58685637-58685656 None:intergenic 35.0%
TCAACATCTCAAAAAACCAG+TGG + chr1_3:58685711-58685730 Msa0128840:five_prime_UTR 35.0%
!!! GGATTTTGGGTTGGAATAAA+GGG - chr1_3:58685897-58685916 None:intergenic 35.0%
! GGTTGGTACTTTAAGCTTAT+TGG - chr1_3:58685944-58685963 None:intergenic 35.0%
!!! TTTGAAGGTTTTGTTGGAAG+GGG - chr1_3:58686016-58686035 None:intergenic 35.0%
ATCATTACGGAACCAAACAA+TGG - chr1_3:58686136-58686155 None:intergenic 35.0%
CATGAACACGAAGATCATTA+CGG - chr1_3:58686149-58686168 None:intergenic 35.0%
GCAGGATCAAAACAATAAAC+AGG - chr1_3:58686219-58686238 None:intergenic 35.0%
!!! TGTTTTGATCCTGCTGATTA+TGG + chr1_3:58686225-58686244 Msa0128840:CDS 35.0%
!! GTTTTGATCCTGCTGATTAT+GGG + chr1_3:58686226-58686245 Msa0128840:CDS 35.0%
GATTATGGGAAATCTTCATC+TGG + chr1_3:58686240-58686259 Msa0128840:CDS 35.0%
TCATCTGGGTTTGATAAAAC+AGG + chr1_3:58686255-58686274 Msa0128840:CDS 35.0%
GGATCTTAGGAAGAATCTTA+AGG + chr1_3:58686314-58686333 Msa0128840:CDS 35.0%
TTGAATTGGCGAAGGAAATT+GGG + chr1_3:58686388-58686407 Msa0128840:CDS 35.0%
GAGGATATGCCTTCAAATTA+TGG + chr1_3:58686561-58686580 Msa0128840:CDS 35.0%
GATATGCCTTCAAATTATGG+TGG + chr1_3:58686564-58686583 Msa0128840:CDS 35.0%
GAGTTCAGAAATTGGAGATA+AGG + chr1_3:58686598-58686617 Msa0128840:CDS 35.0%
GGAGATAAGGAAAACTATTG+AGG + chr1_3:58686611-58686630 Msa0128840:CDS 35.0%
AAGGAAAACTATTGAGGCTT+TGG + chr1_3:58686617-58686636 Msa0128840:CDS 35.0%
TGGTGATATTCCTACTTTGA+TGG + chr1_3:58686680-58686699 Msa0128840:CDS 35.0%
!! ACACCTTTTATGAGAAGTGT+TGG + chr1_3:58686951-58686970 Msa0128840:intron 35.0%
TTAGAAACGATCGAGTGTTA+TGG + chr1_3:58687050-58687069 Msa0128840:intron 35.0%
CACTACTCAATCAAGCTAAT+AGG - chr1_3:58687192-58687211 None:intergenic 35.0%
GATATTAGTATACCACCTTG+AGG + chr1_3:58687218-58687237 Msa0128840:intron 35.0%
ATCAACAGATTCAAACCTCA+AGG - chr1_3:58687236-58687255 None:intergenic 35.0%
ACGCTTGAAAAATGGAACTT+AGG - chr1_3:58687364-58687383 None:intergenic 35.0%
ACAGAGGCTTAAAAGATTTG+CGG + chr1_3:58687491-58687510 Msa0128840:CDS 35.0%
ATGCAAAATTTCTCCATGGT+TGG + chr1_3:58687587-58687606 Msa0128840:CDS 35.0%
GCTTCATCAAGCAAAAATGA+TGG + chr1_3:58687760-58687779 Msa0128840:CDS 35.0%
TCATCAAGCAAAAATGATGG+TGG + chr1_3:58687763-58687782 Msa0128840:CDS 35.0%
CATCCAAAACTGGAACTAAT+TGG + chr1_3:58687788-58687807 Msa0128840:CDS 35.0%
! CAACCAATTAGTTCCAGTTT+TGG - chr1_3:58687794-58687813 None:intergenic 35.0%
GACTTCTTTAGGTAATGTTC+TGG + chr1_3:58687835-58687854 Msa0128840:intron 35.0%
GACTACATGTAGAGTTTAGT+CGG + chr1_3:58688275-58688294 Msa0128840:intron 35.0%
ACAAACTAAACTAGGCTTTC+GGG + chr1_3:58688344-58688363 Msa0128840:intron 35.0%
AATCAAAACTAACTGATGCC+AGG - chr1_3:58688516-58688535 None:intergenic 35.0%
TTGCTGTAAGAGAAACGAAA+AGG - chr1_3:58688672-58688691 None:intergenic 35.0%
CTATTTAAACCCCTACATTC+TGG + chr1_3:58688694-58688713 Msa0128840:intron 35.0%
!! CATTTTCTAGCCAAACTTTC+AGG + chr1_3:58688729-58688748 Msa0128840:intron 35.0%
!! CTGTTTTGTTGCCTTTTTTG+GGG + chr1_3:58688783-58688802 Msa0128840:intron 35.0%
GAAAAGGACTTGCAATAGTT+TGG - chr1_3:58688861-58688880 None:intergenic 35.0%
TGATAAGTACAAACTCGACT+GGG - chr1_3:58688948-58688967 None:intergenic 35.0%
TTCCTCTTTCCTAGAAATGT+AGG + chr1_3:58689108-58689127 Msa0128840:intron 35.0%
TCCTCTTTCCTAGAAATGTA+GGG + chr1_3:58689109-58689128 Msa0128840:intron 35.0%
! GTTATTGTTCTTGGTAGCAT+AGG + chr1_3:58689142-58689161 Msa0128840:intron 35.0%
GCACAATCTAGTTATACTGT+CGG + chr1_3:58689305-58689324 Msa0128840:intron 35.0%
TCTCTTCCTTCTCATTGTTA+TGG + chr1_3:58689367-58689386 Msa0128840:intron 35.0%
ACCTTACTCAATTGTGTGAT+TGG + chr1_3:58689580-58689599 Msa0128840:intron 35.0%
ACCAATCACACAATTGAGTA+AGG - chr1_3:58689584-58689603 None:intergenic 35.0%
!! ATTGTGTGATTGGTGTTATC+TGG + chr1_3:58689590-58689609 Msa0128840:intron 35.0%
TGTTATCTGGTTAATTGTCC+AGG + chr1_3:58689603-58689622 Msa0128840:intron 35.0%
ATACAACAGAACTTGTGAAG+GGG - chr1_3:58689762-58689781 None:intergenic 35.0%
CATACAACAGAACTTGTGAA+GGG - chr1_3:58689763-58689782 None:intergenic 35.0%
ACATACAACAGAACTTGTGA+AGG - chr1_3:58689764-58689783 None:intergenic 35.0%
GATCTATGGTCCAGAATTTA+TGG + chr1_3:58689921-58689940 Msa0128840:three_prime_UTR 35.0%
TCCTCAATAACACGATACTT+TGG + chr1_3:58689948-58689967 Msa0128840:three_prime_UTR 35.0%
CCTCAATAACACGATACTTT+GGG + chr1_3:58689949-58689968 Msa0128840:three_prime_UTR 35.0%
AGAAATTTGAAAAATGGGCG+AGG + chr1_3:58689974-58689993 Msa0128840:three_prime_UTR 35.0%
TTAGTGTTCCCTTATTGAAG+GGG + chr1_3:58690174-58690193 Msa0128840:three_prime_UTR 35.0%
! TTCAATGTGTGTGGTTTGGA+TGG - chr1_3:58685628-58685647 None:intergenic 40.0%
CTCAAAAAACCAGTGGTAGT+AGG + chr1_3:58685718-58685737 Msa0128840:five_prime_UTR 40.0%
TATCTGTTACCTACTACCAC+TGG - chr1_3:58685730-58685749 None:intergenic 40.0%
TTGAGATTCTCTTTCTCTGG+TGG - chr1_3:58685799-58685818 None:intergenic 40.0%
AGGTTGAGATTCTCTTTCTC+TGG - chr1_3:58685802-58685821 None:intergenic 40.0%
!!! TTTTGGGTTGGAATAAAGGG+AGG - chr1_3:58685894-58685913 None:intergenic 40.0%
!!! GGGATTTTGGGTTGGAATAA+AGG - chr1_3:58685898-58685917 None:intergenic 40.0%
!! GTAAAGATGGGATTTTGGGT+TGG - chr1_3:58685906-58685925 None:intergenic 40.0%
! GTGGTGGTGATAGTAAAGAT+GGG - chr1_3:58685918-58685937 None:intergenic 40.0%
ACTTTAAGCTTATTGGGTGG+TGG - chr1_3:58685937-58685956 None:intergenic 40.0%
GGTACTTTAAGCTTATTGGG+TGG - chr1_3:58685940-58685959 None:intergenic 40.0%
ATGAGTGAGTGATGAAGCTT+GGG - chr1_3:58685965-58685984 None:intergenic 40.0%
TTTGTTGGAAGGGGAAGAAT+GGG - chr1_3:58686007-58686026 None:intergenic 40.0%
! TTTTGTTGGAAGGGGAAGAA+TGG - chr1_3:58686008-58686027 None:intergenic 40.0%
ATTACGGAACCAAACAATGG+CGG - chr1_3:58686133-58686152 None:intergenic 40.0%
GAAGATTTCCCATAATCAGC+AGG - chr1_3:58686237-58686256 None:intergenic 40.0%
! TTGAATCGGTTTCGGATCTT+AGG + chr1_3:58686301-58686320 Msa0128840:CDS 40.0%
AGGAAGAATCTTAAGGCAAG+AGG + chr1_3:58686321-58686340 Msa0128840:CDS 40.0%
GGAAGAATCTTAAGGCAAGA+GGG + chr1_3:58686322-58686341 Msa0128840:CDS 40.0%
AATTCAACCAAAACCGTCTC+CGG - chr1_3:58686375-58686394 None:intergenic 40.0%
GTTGAATTGGCGAAGGAAAT+TGG + chr1_3:58686387-58686406 Msa0128840:CDS 40.0%
TGAATTGGCGAAGGAAATTG+GGG + chr1_3:58686389-58686408 Msa0128840:CDS 40.0%
TGCTGTGTATTGTCATAGAG+AGG + chr1_3:58686416-58686435 Msa0128840:CDS 40.0%
TAGAGAGGTTTCTCATGATG+AGG + chr1_3:58686431-58686450 Msa0128840:CDS 40.0%
TTCTCATGATGAGGTGAAGA+TGG + chr1_3:58686440-58686459 Msa0128840:CDS 40.0%
AAGATGGAGGAGAAGATTGA+AGG + chr1_3:58686456-58686475 Msa0128840:CDS 40.0%
AGATGGAGGAGAAGATTGAA+GGG + chr1_3:58686457-58686476 Msa0128840:CDS 40.0%
GAAGATTGAAGGGAAGATGA+AGG + chr1_3:58686467-58686486 Msa0128840:CDS 40.0%
!! ATGTGGAGGTGAAGTGTTTT+TGG + chr1_3:58686496-58686515 Msa0128840:CDS 40.0%
!! TGTGGAGGTGAAGTGTTTTT+GGG + chr1_3:58686497-58686516 Msa0128840:CDS 40.0%
! TGAGGATTTGCCGTTTAGTT+TGG + chr1_3:58686539-58686558 Msa0128840:CDS 40.0%
GGCATATCCTCCAAACTAAA+CGG - chr1_3:58686552-58686571 None:intergenic 40.0%
!! TGAGGCTTTGGATCAACTTA+AGG + chr1_3:58686629-58686648 Msa0128840:CDS 40.0%
!! GAGGCTTTGGATCAACTTAA+GGG + chr1_3:58686630-58686649 Msa0128840:CDS 40.0%
! ATTCCTACTTTGATGGACCT+TGG + chr1_3:58686687-58686706 Msa0128840:CDS 40.0%
GAAAAACACCTGTGACATTG+TGG - chr1_3:58686727-58686746 None:intergenic 40.0%
!! TGCATTGGCTCATTCTTAGA+TGG + chr1_3:58686794-58686813 Msa0128840:intron 40.0%
TTACATGTACCAACACGTGT+CGG + chr1_3:58686918-58686937 Msa0128840:intron 40.0%
! CTTCTCATAAAAGGTGTGTC+CGG - chr1_3:58686948-58686967 None:intergenic 40.0%
CCACCAACACTTCTCATAAA+AGG - chr1_3:58686957-58686976 None:intergenic 40.0%
!!! CCTTTTATGAGAAGTGTTGG+TGG + chr1_3:58686954-58686973 Msa0128840:intron 40.0%
AACAGATTCAAACCTCAAGG+TGG - chr1_3:58687233-58687252 None:intergenic 40.0%
!!! TTCCATTTTTCAAGCGTTGC+TGG + chr1_3:58687367-58687386 Msa0128840:intron 40.0%
TTCCAGCAACGCTTGAAAAA+TGG - chr1_3:58687372-58687391 None:intergenic 40.0%
GTCATGGAAGAATTAGACAC+TGG - chr1_3:58687450-58687469 None:intergenic 40.0%
GTGTCTAATTCTTCCATGAC+AGG + chr1_3:58687450-58687469 Msa0128840:CDS 40.0%
TCTAATTCTTCCATGACAGG+AGG + chr1_3:58687453-58687472 Msa0128840:CDS 40.0%
CTAATTCTTCCATGACAGGA+GGG + chr1_3:58687454-58687473 Msa0128840:CDS 40.0%
TAATTCTTCCATGACAGGAG+GGG + chr1_3:58687455-58687474 Msa0128840:CDS 40.0%
TGTGAAGCTCAACCAAACAA+GGG + chr1_3:58687519-58687538 Msa0128840:CDS 40.0%
TCAACCAAACAAGGGGTTTA+AGG + chr1_3:58687527-58687546 Msa0128840:CDS 40.0%
CAAACAAGGGGTTTAAGGAT+GGG + chr1_3:58687532-58687551 Msa0128840:CDS 40.0%
AAACAAGGGGTTTAAGGATG+GGG + chr1_3:58687533-58687552 Msa0128840:CDS 40.0%
GGGGCACAAGATAGTATATA+TGG + chr1_3:58687552-58687571 Msa0128840:CDS 40.0%
AATTTCTCCATGGTTGGCAA+TGG + chr1_3:58687593-58687612 Msa0128840:CDS 40.0%
ATTTCTCCATGGTTGGCAAT+GGG + chr1_3:58687594-58687613 Msa0128840:CDS 40.0%
!! GGTTGATGTTTGAGTTGCTA+TGG + chr1_3:58687809-58687828 Msa0128840:CDS 40.0%
!! TGATGTTTGAGTTGCTATGG+AGG + chr1_3:58687812-58687831 Msa0128840:CDS 40.0%
!! GATGTTTGAGTTGCTATGGA+GGG + chr1_3:58687813-58687832 Msa0128840:CDS 40.0%
! GCTGTGTTGCATCATACTTT+TGG + chr1_3:58688011-58688030 Msa0128840:intron 40.0%
GACCGTTCAGATATTCTCTT+AGG + chr1_3:58688112-58688131 Msa0128840:intron 40.0%
GGCCTAAGAGAATATCTGAA+CGG - chr1_3:58688117-58688136 None:intergenic 40.0%
!! CATGAACTGACTGGTTTGTT+TGG - chr1_3:58688138-58688157 None:intergenic 40.0%
AGTTGTCCAAGACTTGAATC+GGG - chr1_3:58688443-58688462 None:intergenic 40.0%
CAGTTGTCCAAGACTTGAAT+CGG - chr1_3:58688444-58688463 None:intergenic 40.0%
TATAGCTAGCATTGCTTAGC+TGG + chr1_3:58688489-58688508 Msa0128840:intron 40.0%
ATAGCTAGCATTGCTTAGCT+GGG + chr1_3:58688490-58688509 Msa0128840:intron 40.0%
CATGCTGAACTGTATCAAAC+TGG - chr1_3:58688571-58688590 None:intergenic 40.0%
TTGGCTAGAAAATGCAGAGA+CGG - chr1_3:58688723-58688742 None:intergenic 40.0%
GAAAAAAAAAAAGCCAGCGG+TGG - chr1_3:58688830-58688849 None:intergenic 40.0%
GTGATAAGTACAAACTCGAC+TGG - chr1_3:58688949-58688968 None:intergenic 40.0%
CCTCTTTCCTAGAAATGTAG+GGG + chr1_3:58689110-58689129 Msa0128840:intron 40.0%
CTAGGGAAAATTGATTGGGT+TGG + chr1_3:58689398-58689417 Msa0128840:intron 40.0%
TGAGGAAGAGCCATAAATTC+TGG - chr1_3:58689934-58689953 None:intergenic 40.0%
!! CCCAAAGTATCGTGTTATTG+AGG - chr1_3:58689952-58689971 None:intergenic 40.0%
CAGAAACACCCCTTCAATAA+GGG - chr1_3:58690185-58690204 None:intergenic 40.0%
ACAGAAACACCCCTTCAATA+AGG - chr1_3:58690186-58690205 None:intergenic 40.0%
!! TATTGAAGGGGTGTTTCTGT+TGG + chr1_3:58690186-58690205 Msa0128840:three_prime_UTR 40.0%
! TCTGGTGGTGTTTGGTTGTT+GGG - chr1_3:58685784-58685803 None:intergenic 45.0%
! TCTCTTTCTCTGGTGGTGTT+TGG - chr1_3:58685792-58685811 None:intergenic 45.0%
TTGGAATAAAGGGAGGAGAG+AGG - chr1_3:58685887-58685906 None:intergenic 45.0%
! GGTGGTGGTGATAGTAAAGA+TGG - chr1_3:58685919-58685938 None:intergenic 45.0%
! TTAAGCTTATTGGGTGGTGG+TGG - chr1_3:58685934-58685953 None:intergenic 45.0%
GATGAGTGAGTGATGAAGCT+TGG - chr1_3:58685966-58685985 None:intergenic 45.0%
AGGAGAGTGGTGATTTGAGA+GGG - chr1_3:58686059-58686078 None:intergenic 45.0%
AAGGAGAGTGGTGATTTGAG+AGG - chr1_3:58686060-58686079 None:intergenic 45.0%
GAATCTTAAGGCAAGAGGGT+CGG + chr1_3:58686326-58686345 Msa0128840:CDS 45.0%
!!! GGAGACGGTTTTGGTTGAAT+TGG + chr1_3:58686374-58686393 Msa0128840:CDS 45.0%
!!! GGTTTTGGTTGAATTGGCGA+AGG + chr1_3:58686380-58686399 Msa0128840:CDS 45.0%
TCATGATGAGGTGAAGATGG+AGG + chr1_3:58686443-58686462 Msa0128840:CDS 45.0%
GATTGAAGGGAAGATGAAGG+AGG + chr1_3:58686470-58686489 Msa0128840:CDS 45.0%
GAAGATGAAGGAGGAGAATG+TGG + chr1_3:58686479-58686498 Msa0128840:CDS 45.0%
!! GTGGAGGTGAAGTGTTTTTG+GGG + chr1_3:58686498-58686517 Msa0128840:CDS 45.0%
!! GGATTTGCCGTTTAGTTTGG+AGG + chr1_3:58686542-58686561 Msa0128840:CDS 45.0%
GTTGAACATCACCACGAGAA+GGG - chr1_3:58686659-58686678 None:intergenic 45.0%
AGTTGAACATCACCACGAGA+AGG - chr1_3:58686660-58686679 None:intergenic 45.0%
! TCTCGTGGTGATGTTCAACT+TGG + chr1_3:58686660-58686679 Msa0128840:CDS 45.0%
AGACCAAGGTCCATCAAAGT+AGG - chr1_3:58686693-58686712 None:intergenic 45.0%
!! TGGCAGATGGATTAAGACCA+AGG - chr1_3:58686707-58686726 None:intergenic 45.0%
TACATGTACCAACACGTGTC+GGG + chr1_3:58686919-58686938 Msa0128840:intron 45.0%
GTGTGAAGCTCAACCAAACA+AGG + chr1_3:58687518-58687537 Msa0128840:CDS 45.0%
GTGAAGCTCAACCAAACAAG+GGG + chr1_3:58687520-58687539 Msa0128840:CDS 45.0%
CCATCCTTAAACCCCTTGTT+TGG - chr1_3:58687534-58687553 None:intergenic 45.0%
CCAAACAAGGGGTTTAAGGA+TGG + chr1_3:58687531-58687550 Msa0128840:CDS 45.0%
TCAGCTCATCAAACATTGCG+CGG - chr1_3:58687632-58687651 None:intergenic 45.0%
TGCTATGGAGGGACTTCTTT+AGG + chr1_3:58687824-58687843 Msa0128840:CDS 45.0%
TAGACCCATGCCCTAAGTTT+GGG + chr1_3:58688410-58688429 Msa0128840:intron 45.0%
ATGTCCCAAACTTAGGGCAT+GGG - chr1_3:58688417-58688436 None:intergenic 45.0%
AAGTACAAACTCGACTGGGT+GGG - chr1_3:58688944-58688963 None:intergenic 45.0%
TAAGTACAAACTCGACTGGG+TGG - chr1_3:58688945-58688964 None:intergenic 45.0%
! CCCCTACATTTCTAGGAAAG+AGG - chr1_3:58689113-58689132 None:intergenic 45.0%
! CTCTGGTGGTGTTTGGTTGT+TGG - chr1_3:58685785-58685804 None:intergenic 50.0%
AGGGAGAGAGAAGCAAGTGA+CGG - chr1_3:58685856-58685875 None:intergenic 50.0%
GAGGAGAGAGGAGAGAGAAA+GGG - chr1_3:58685875-58685894 None:intergenic 50.0%
GTGAGTGATGAAGCTTGGGT+TGG - chr1_3:58685961-58685980 None:intergenic 50.0%
!! AGGGGAAGAATGGGTTTTGG+TGG - chr1_3:58685998-58686017 None:intergenic 50.0%
!! GGAAGGGGAAGAATGGGTTT+TGG - chr1_3:58686001-58686020 None:intergenic 50.0%
AGTAGGACGGTGAGGGATTA+AGG - chr1_3:58686079-58686098 None:intergenic 50.0%
TTCGGAGAACCGCCATTGTT+TGG + chr1_3:58686121-58686140 Msa0128840:CDS 50.0%
TCGGATCTTGTGGTGAGAGT+TGG + chr1_3:58686345-58686364 Msa0128840:CDS 50.0%
CGGATCTTGTGGTGAGAGTT+GGG + chr1_3:58686346-58686365 Msa0128840:CDS 50.0%
ATTGGCGAAGGAAATTGGGG+CGG + chr1_3:58686392-58686411 Msa0128840:CDS 50.0%
GATGAAGGAGGAGAATGTGG+AGG + chr1_3:58686482-58686501 Msa0128840:CDS 50.0%
TCCATCTGCCACAATGTCAC+AGG + chr1_3:58686716-58686735 Msa0128840:CDS 50.0%
ACCTGTGACATTGTGGCAGA+TGG - chr1_3:58686720-58686739 None:intergenic 50.0%
AGCATGCAGCAGAAACAAGC+AGG - chr1_3:58687320-58687339 None:intergenic 50.0%
TATTGGTCGTAACCTCGTGC+AGG + chr1_3:58687416-58687435 Msa0128840:intron 50.0%
AGCTCATCAAACATTGCGCG+GGG - chr1_3:58687630-58687649 None:intergenic 50.0%
CAGCTCATCAAACATTGCGC+GGG - chr1_3:58687631-58687650 None:intergenic 50.0%
AGCTGAAGAAAACTGCCAGC+AGG + chr1_3:58687646-58687665 Msa0128840:CDS 50.0%
! GATGGTGGCTCATCCAAAAC+TGG + chr1_3:58687778-58687797 Msa0128840:CDS 50.0%
CTAAACTAGGCTTTCGGGCT+AGG + chr1_3:58688349-58688368 Msa0128840:intron 50.0%
CTAGACCCATGCCCTAAGTT+TGG + chr1_3:58688409-58688428 Msa0128840:intron 50.0%
CATGTCCCAAACTTAGGGCA+TGG - chr1_3:58688418-58688437 None:intergenic 50.0%
GGGCTCATGTCCCAAACTTA+GGG - chr1_3:58688423-58688442 None:intergenic 50.0%
CATGAGCCCGATTCAAGTCT+TGG + chr1_3:58688434-58688453 Msa0128840:intron 50.0%
GCTAGAAAATGCAGAGACGG+TGG - chr1_3:58688720-58688739 None:intergenic 50.0%
!!! CCTTTTTTGGGGTCTGCAGA+CGG + chr1_3:58688794-58688813 Msa0128840:intron 50.0%
TTCCTAGAAATGTAGGGGCC+AGG + chr1_3:58689115-58689134 Msa0128840:intron 50.0%
TCCTAGAAATGTAGGGGCCA+GGG + chr1_3:58689116-58689135 Msa0128840:intron 50.0%
CCAAGAACAATAACACCCCC+TGG - chr1_3:58689136-58689155 None:intergenic 50.0%
!! CCAGGGGGTGTTATTGTTCT+TGG + chr1_3:58689133-58689152 Msa0128840:intron 50.0%
! GGTTGGCTCTTTCAGTGAGA+GGG + chr1_3:58689415-58689434 Msa0128840:intron 50.0%
TCTCAACCTCACACCCTCAC+CGG + chr1_3:58685813-58685832 Msa0128840:CDS 55.0%
AGAGAAGCAAGTGACGGTGG+TGG - chr1_3:58685850-58685869 None:intergenic 55.0%
GAGAGAGAAGCAAGTGACGG+TGG - chr1_3:58685853-58685872 None:intergenic 55.0%
GGAGGAGAGAGGAGAGAGAA+AGG - chr1_3:58685876-58685895 None:intergenic 55.0%
CGGTGAGGGATTAAGGAGAG+TGG - chr1_3:58686072-58686091 None:intergenic 55.0%
AAGGGTCAGTAGGACGGTGA+GGG - chr1_3:58686086-58686105 None:intergenic 55.0%
CGGAAGAAGGGTCAGTAGGA+CGG - chr1_3:58686092-58686111 None:intergenic 55.0%
TGTGGTGAGAGTTGGGAAGC+CGG + chr1_3:58686353-58686372 Msa0128840:CDS 55.0%
CTTAAGGGTCTCCCTTCTCG+TGG + chr1_3:58686645-58686664 Msa0128840:CDS 55.0%
GTCGTAACCTCGTGCAGGAT+GGG + chr1_3:58687421-58687440 Msa0128840:intron 55.0%
TTCAGTCTCCCCTCCTGTCA+TGG - chr1_3:58687466-58687485 None:intergenic 55.0%
! GGGAGACTGAAGCACTACAG+AGG + chr1_3:58687475-58687494 Msa0128840:CDS 55.0%
AGGCATCCCATTGCCAACCA+TGG - chr1_3:58687603-58687622 None:intergenic 55.0%
CTCATCAAACATTGCGCGGG+GGG - chr1_3:58687628-58687647 None:intergenic 55.0%
GCTCATCAAACATTGCGCGG+GGG - chr1_3:58687629-58687648 None:intergenic 55.0%
CGGGCTCATGTCCCAAACTT+AGG - chr1_3:58688424-58688443 None:intergenic 55.0%
TAGCATTGCTTAGCTGGGCC+TGG + chr1_3:58688495-58688514 Msa0128840:intron 55.0%
AGACGGTGGCCAGAATGTAG+GGG - chr1_3:58688706-58688725 None:intergenic 55.0%
GAGACGGTGGCCAGAATGTA+GGG - chr1_3:58688707-58688726 None:intergenic 55.0%
AGAGACGGTGGCCAGAATGT+AGG - chr1_3:58688708-58688727 None:intergenic 55.0%
CCGTCTGCAGACCCCAAAAA+AGG - chr1_3:58688797-58688816 None:intergenic 55.0%
CCTAGAAATGTAGGGGCCAG+GGG + chr1_3:58689117-58689136 Msa0128840:intron 55.0%
CTAGAAATGTAGGGGCCAGG+GGG + chr1_3:58689118-58689137 Msa0128840:intron 55.0%
!! GGGTTGGCTCTTTCAGTGAG+AGG + chr1_3:58689414-58689433 Msa0128840:intron 55.0%
TGCTCCAGCCACTGCTTGTA+CGG + chr1_3:58689670-58689689 Msa0128840:CDS 55.0%
!! GCAAGTGACGGTGGTGGAAG+CGG - chr1_3:58685844-58685863 None:intergenic 60.0%
GAAGGGTCAGTAGGACGGTG+AGG - chr1_3:58686087-58686106 None:intergenic 60.0%
GAAGAGCAGCGGCGGAAGAA+GGG - chr1_3:58686104-58686123 None:intergenic 60.0%
CTTCTTCCGCCGCTGCTCTT+CGG + chr1_3:58686103-58686122 Msa0128840:CDS 60.0%
GGCAAGAGGGTCGGATCTTG+TGG + chr1_3:58686335-58686354 Msa0128840:CDS 60.0%
GAGAGTTGGGAAGCCGGAGA+CGG + chr1_3:58686359-58686378 Msa0128840:CDS 60.0%
! TGGGAAGCCGGAGACGGTTT+TGG + chr1_3:58686365-58686384 Msa0128840:CDS 60.0%
ACCAACACGTGTCGGGACAC+CGG + chr1_3:58686926-58686945 Msa0128840:intron 60.0%
GGTCGTAACCTCGTGCAGGA+TGG + chr1_3:58687420-58687439 Msa0128840:intron 60.0%
! CTAGGCTTTCGGGCTAGGTC+AGG + chr1_3:58688354-58688373 Msa0128840:intron 60.0%
CCCCTGGCCCCTACATTTCT+AGG - chr1_3:58689120-58689139 None:intergenic 60.0%
GCTCCAGCCACTGCTTGTAC+GGG + chr1_3:58689671-58689690 Msa0128840:CDS 60.0%
AAGCGCACCCGTACAAGCAG+TGG - chr1_3:58689681-58689700 None:intergenic 60.0%
! GTGGTTCCGGTGAGGGTGTG+AGG - chr1_3:58685822-58685841 None:intergenic 65.0%
GGAAGCGGTGGTTCCGGTGA+GGG - chr1_3:58685829-58685848 None:intergenic 65.0%
TGGAAGCGGTGGTTCCGGTG+AGG - chr1_3:58685830-58685849 None:intergenic 65.0%
!! GGTGGTGGAAGCGGTGGTTC+CGG - chr1_3:58685835-58685854 None:intergenic 65.0%
!! AGTGACGGTGGTGGAAGCGG+TGG - chr1_3:58685841-58685860 None:intergenic 65.0%
GCGGCGGAAGAAGGGTCAGT+AGG - chr1_3:58686096-58686115 None:intergenic 65.0%
CGAAGAGCAGCGGCGGAAGA+AGG - chr1_3:58686105-58686124 None:intergenic 65.0%
GGTTCTCCGAAGAGCAGCGG+CGG - chr1_3:58686112-58686131 None:intergenic 65.0%
GGCGGTTCTCCGAAGAGCAG+CGG - chr1_3:58686115-58686134 None:intergenic 65.0%
TCCGGTGTCCCGACACGTGT+TGG - chr1_3:58686930-58686949 None:intergenic 65.0%
CTGGCTTCCCATCCTGCACG+AGG - chr1_3:58687431-58687450 None:intergenic 65.0%
CAAACATTGCGCGGGGGGAG+AGG - chr1_3:58687623-58687642 None:intergenic 65.0%
! ACATCTGGGAGCGCACCTGC+TGG - chr1_3:58687664-58687683 None:intergenic 65.0%
GCACCCGTACAAGCAGTGGC+TGG - chr1_3:58689677-58689696 None:intergenic 65.0%
CGGAGTGCAAGCACCACCGC+TGG + chr1_3:58688814-58688833 Msa0128840:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 58685558 58690215 58685558 ID=Msa0128840;Name=Msa0128840
chr1_3 mRNA 58685558 58690215 58685558 ID=Msa0128840-mRNA-1;Parent=Msa0128840;Name=Msa0128840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=217|1|1|1|1|1|4|509|456
chr1_3 exon 58685558 58686737 58685558 ID=Msa0128840-mRNA-1:exon:18910;Parent=Msa0128840-mRNA-1
chr1_3 exon 58687438 58687667 58687438 ID=Msa0128840-mRNA-1:exon:18911;Parent=Msa0128840-mRNA-1
chr1_3 exon 58687750 58687845 58687750 ID=Msa0128840-mRNA-1:exon:18912;Parent=Msa0128840-mRNA-1
chr1_3 exon 58689625 58690215 58689625 ID=Msa0128840-mRNA-1:exon:18913;Parent=Msa0128840-mRNA-1
chr1_3 five_prime_UTR 58685558 58685774 58685558 ID=Msa0128840-mRNA-1:five_prime_utr;Parent=Msa0128840-mRNA-1
chr1_3 CDS 58685775 58686737 58685775 ID=Msa0128840-mRNA-1:cds;Parent=Msa0128840-mRNA-1
chr1_3 CDS 58687438 58687667 58687438 ID=Msa0128840-mRNA-1:cds;Parent=Msa0128840-mRNA-1
chr1_3 CDS 58687750 58687845 58687750 ID=Msa0128840-mRNA-1:cds;Parent=Msa0128840-mRNA-1
chr1_3 CDS 58689625 58689706 58689625 ID=Msa0128840-mRNA-1:cds;Parent=Msa0128840-mRNA-1
chr1_3 three_prime_UTR 58689707 58690215 58689707 ID=Msa0128840-mRNA-1:three_prime_utr;Parent=Msa0128840-mRNA-1
Gene Sequence

>Msa0128840

ATGGAACCCAACAACCAAACACCACCAGAGAAAGAGAATCTCAACCTCACACCCTCACCGGAACCACCGCTTCCACCACCGTCACTTGCTTCTCTCTCCCTTTCTCTCTCCTCTCTCCTCCCTTTATTCCAACCCAAAATCCCATCTTTACTATCACCACCACCACCCAATAAGCTTAAAGTACCAACCCAAGCTTCATCACTCACTCATCTTTCACTTTCCACCAAAACCCATTCTTCCCCTTCCAACAAAACCTTCAAAAAATCTTCTTTTTCAGCAAACCCTCTCAAATCACCACTCTCCTTAATCCCTCACCGTCCTACTGACCCTTCTTCCGCCGCTGCTCTTCGGAGAACCGCCATTGTTTGGTTCCGTAATGATCTTCGTGTTCATGATAACGAAGCTTTGAACACTGCAAATAATGAGTCAATTTCTGTTTTACCTGTTTATTGTTTTGATCCTGCTGATTATGGGAAATCTTCATCTGGGTTTGATAAAACAGGTCCTTATCGTGCTAGTTTTTTGATTGAATCGGTTTCGGATCTTAGGAAGAATCTTAAGGCAAGAGGGTCGGATCTTGTGGTGAGAGTTGGGAAGCCGGAGACGGTTTTGGTTGAATTGGCGAAGGAAATTGGGGCGGATGCTGTGTATTGTCATAGAGAGGTTTCTCATGATGAGGTGAAGATGGAGGAGAAGATTGAAGGGAAGATGAAGGAGGAGAATGTGGAGGTGAAGTGTTTTTGGGGAAGTACTTTGTATCATGTTGAGGATTTGCCGTTTAGTTTGGAGGATATGCCTTCAAATTATGGTGGTTTTAGAGATAGAGTTCAGAAATTGGAGATAAGGAAAACTATTGAGGCTTTGGATCAACTTAAGGGTCTCCCTTCTCGTGGTGATGTTCAACTTGGTGATATTCCTACTTTGATGGACCTTGGTCTTAATCCATCTGCCACAATGTCACAGGATGGGAAGCCAGTGTCTAATTCTTCCATGACAGGAGGGGAGACTGAAGCACTACAGAGGCTTAAAAGATTTGCGGCTGAGTGTGAAGCTCAACCAAACAAGGGGTTTAAGGATGGGGCACAAGATAGTATATATGGTGCCAACTTTTCATGCAAAATTTCTCCATGGTTGGCAATGGGATGCCTCTCCCCCCGCGCAATGTTTGATGAGCTGAAGAAAACTGCCAGCAGTGCTGTTTCCGCTTCATCAAGCAAAAATGATGGTGGCTCATCCAAAACTGGAACTAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGGTTTATTACCAAAAAATATAGTTCTACTAAGAAACAACTGGAAGCTGCTCCAGCCACTGCTTGTACGGGTGCGCTTGCTTAA

Protein sequence

>Msa0128840

MEPNNQTPPEKENLNLTPSPEPPLPPPSLASLSLSLSSLLPLFQPKIPSLLSPPPPNKLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSANPLKSPLSLIPHRPTDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKMKEENVEVKCFWGSTLYHVEDLPFSLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKPVSNSSMTGGETEALQRLKRFAAECEAQPNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA*