AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574830 MtrunA17_Chr8g0391671 97.101 483 9 2 1 479 1 482 0.0 951
Msa0574830 MtrunA17_Chr5g0397811 93.204 103 6 1 194 296 5 106 3.23e-63 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574830 AT1G24610.1 66.102 472 153 4 11 476 4 474 0.0 629
Msa0574830 AT1G14030.1 25.167 449 281 19 20 455 33 439 2.00e-14 75.9

Find 118 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATTGAATTTGGTTAATA+TGG 0.180279 4_1:-78562783 Msa0574830:exon
AGATTCATCATCCATTAATT+TGG 0.191527 4_1:+78559708 None:intergenic
CAAATATGATGGTGCTCTTT+TGG 0.205619 4_1:-78560987 Msa0574830:CDS
ACACTTTCCCACCAAATTAA+TGG 0.230212 4_1:-78559719 Msa0574830:CDS
CTCGATTCCTCAAATGGTTT+AGG 0.230593 4_1:-78562587 Msa0574830:CDS
CTATAATTACAGACTTCTTT+TGG 0.248268 4_1:+78559632 None:intergenic
CATCCATAGCAAAGTAATAA+AGG 0.272419 4_1:+78561082 None:intergenic
TCGATTCCTCAAATGGTTTA+GGG 0.287954 4_1:-78562586 Msa0574830:CDS
TCCTGAACAATTCTAGCATT+TGG 0.291593 4_1:+78561337 None:intergenic
GAGTGAAAGGGTATTGAATT+TGG 0.293052 4_1:-78562792 Msa0574830:five_prime_UTR
TTATTGAAGCAGGGTGCTTC+AGG 0.306570 4_1:-78559685 Msa0574830:CDS
CCACCAAACGGATGCTTATC+TGG 0.313373 4_1:+78561511 None:intergenic
CTCAAATGGTTTAGGGTTAG+TGG 0.331608 4_1:-78562579 Msa0574830:CDS
TCTTCCCCAGGAAAGAAAAT+AGG 0.342405 4_1:+78562160 None:intergenic
TGAATTGTGGGCAATGAAAC+TGG 0.345575 4_1:-78562266 Msa0574830:CDS
GAGATGAAGCATCTACTTCT+TGG 0.347456 4_1:+78561488 None:intergenic
TGCTCTGTGTGTCATTGCAC+TGG 0.349711 4_1:-78559743 Msa0574830:CDS
TAAGTGACATTGAACACTTT+TGG 0.368647 4_1:-78559493 Msa0574830:three_prime_UTR
TCCAAATGCTAGAATTGTTC+AGG 0.369501 4_1:-78561338 Msa0574830:CDS
CAATTAACCTCCCATGTTCC+CGG 0.370584 4_1:-78562455 Msa0574830:intron
GGAGCAGGTGTAGAGAAATT+TGG 0.377711 4_1:+78560932 None:intergenic
GATGAAGATGCGCATGTTAG+TGG 0.382579 4_1:+78562695 None:intergenic
GAAGTAGATGCTTCATCTCT+TGG 0.384991 4_1:-78561484 Msa0574830:CDS
CATGGTAACAAGCAATCAAA+TGG 0.388478 4_1:-78561421 Msa0574830:CDS
CACCCACATCTTTGTGCTAC+CGG 0.389753 4_1:+78561306 None:intergenic
AGTACTCCTTGCAAGTGATA+TGG 0.393467 4_1:-78559863 Msa0574830:CDS
CTTCATGAAAGGGCAAAACT+TGG 0.399181 4_1:-78562232 Msa0574830:CDS
GCTCAAAATCAAGAAGAAAT+CGG 0.402032 4_1:+78561566 None:intergenic
GCAATTAGGTCAGTACCAAT+TGG 0.411464 4_1:+78562542 None:intergenic
GTGGAAGATACCTTGAGATC+TGG 0.412921 4_1:+78560863 None:intergenic
TTGGTTAATATGGTTATAGT+TGG 0.414989 4_1:-78562773 Msa0574830:exon
CACTAACCCTAAACCATTTG+AGG 0.419235 4_1:+78562580 None:intergenic
ATCCACACGATCTCATCAAA+TGG 0.420118 4_1:-78562658 Msa0574830:CDS
GACCCTTTATTACTTTGCTA+TGG 0.431078 4_1:-78561085 Msa0574830:CDS
AATAATAGAAGGTCGTTTGT+TGG 0.431982 4_1:-78559896 Msa0574830:CDS
GCACAACTCGATTCCTCAAA+TGG 0.432361 4_1:-78562593 Msa0574830:CDS
TTAGATGCTGAGGCTCCTCT+TGG 0.432705 4_1:-78559802 Msa0574830:CDS
ATCCATAGCAAAGTAATAAA+GGG 0.432856 4_1:+78561083 None:intergenic
TGATTACACATGTCAATTAG+AGG 0.440828 4_1:+78561370 None:intergenic
GTTAATATGGTTATAGTTGG+TGG 0.443140 4_1:-78562770 Msa0574830:exon
AAGTGTACCTGGTGAAGAAT+AGG 0.446363 4_1:+78562115 None:intergenic
TTATAGTTGGTGGTGGTAGT+TGG 0.452028 4_1:-78562760 Msa0574830:CDS
TTGAGCTCGATACAGTCATA+AGG 0.453734 4_1:+78561007 None:intergenic
GAAAAGTAGAGTAGAGTGAA+AGG 0.459061 4_1:-78562805 Msa0574830:five_prime_UTR
TAGGAAGAGTGTAAGTTTGT+GGG 0.460771 4_1:+78562179 None:intergenic
GATGCTGCGAGCATGGCAGC+TGG 0.474563 4_1:-78560965 Msa0574830:CDS
TGAGCTCGATACAGTCATAA+GGG 0.476129 4_1:+78561008 None:intergenic
TGATGAATCTTTATTGAAGC+AGG 0.476763 4_1:-78559695 Msa0574830:CDS
TTCATCATCCATTAATTTGG+TGG 0.478727 4_1:+78559711 None:intergenic
TTCATGTAACAGGTGAGCTT+AGG 0.480929 4_1:-78559928 Msa0574830:intron
ATGTAACAGGTGAGCTTAGG+TGG 0.482998 4_1:-78559925 Msa0574830:intron
TGTGTTGAGGAAGAGCAATT+AGG 0.483022 4_1:+78562528 None:intergenic
ATAGGAAGAGTGTAAGTTTG+TGG 0.491387 4_1:+78562178 None:intergenic
CAATTAGGTCAGTACCAATT+GGG 0.491707 4_1:+78562543 None:intergenic
TTTGAAGCTTCTTCATGAAA+GGG 0.494538 4_1:-78562242 Msa0574830:CDS
GTTTGAAGCTTCTTCATGAA+AGG 0.494844 4_1:-78562243 Msa0574830:CDS
CTCTACACCTGCTCCATGGC+AGG 0.495127 4_1:-78560924 Msa0574830:CDS
TGGTTTAGGGTTAGTGGCTA+AGG 0.496899 4_1:-78562573 Msa0574830:CDS
ACACCAGATAAGCATCCGTT+TGG 0.499859 4_1:-78561514 Msa0574830:CDS
GCTAAGGAAGATATCCCAAT+TGG 0.505887 4_1:-78562557 Msa0574830:CDS
TGTGGGAGATTACTGATGTA+TGG 0.507516 4_1:+78562196 None:intergenic
GCATTTGGCAGATGAATTGT+GGG 0.511625 4_1:-78562278 Msa0574830:intron
CCAGATAAGCATCCGTTTGG+TGG 0.512174 4_1:-78561511 Msa0574830:CDS
AAAAGAAAAGTGAAGGGAGA+AGG 0.513654 4_1:-78562848 None:intergenic
TCAAGAGCATTCAAGTTACA+TGG 0.514609 4_1:-78561439 Msa0574830:CDS
GGTAAAGCTTCTTTCATCAA+AGG 0.514902 4_1:-78559584 Msa0574830:CDS
CTATCTCAGCTAAATCTAGC+TGG 0.514942 4_1:-78560893 Msa0574830:CDS
GGTGGGCAAGAAATAATAGA+AGG 0.517366 4_1:-78559907 Msa0574830:CDS
TAGATGCTTCATCTCTTGGA+TGG 0.523115 4_1:-78561480 Msa0574830:CDS
TCATCATCCATTAATTTGGT+GGG 0.525608 4_1:+78559712 None:intergenic
ATAAGTTCCTGCCATGGAGC+AGG 0.528390 4_1:+78560917 None:intergenic
GAAGCTTTACCTTCCTTGAG+AGG 0.528724 4_1:+78559596 None:intergenic
AATGACACACAGAGCAATCA+AGG 0.529045 4_1:+78559750 None:intergenic
AATATGGTTATAGTTGGTGG+TGG 0.531556 4_1:-78562767 Msa0574830:CDS
TCAATTAGAGGGAGCATCAT+GGG 0.532994 4_1:+78561382 None:intergenic
TCCACACGATCTCATCAAAT+GGG 0.536822 4_1:-78562657 Msa0574830:CDS
TGGTGGTGGTAGTTGGAAAA+CGG 0.543989 4_1:-78562753 Msa0574830:CDS
GTCAATTAGAGGGAGCATCA+TGG 0.544285 4_1:+78561381 None:intergenic
ATGGTAACAAGCAATCAAAT+GGG 0.547291 4_1:-78561420 Msa0574830:CDS
AAAAGTAGAGTAGAGTGAAA+GGG 0.548453 4_1:-78562804 Msa0574830:five_prime_UTR
TCACAAATCCATAATCAAGA+AGG 0.549483 4_1:+78561041 None:intergenic
TCTACTTCTTGGCCACCAAA+CGG 0.549674 4_1:+78561499 None:intergenic
ATCAAATGGGTAACAAGAGA+AGG 0.550397 4_1:-78562644 Msa0574830:CDS
TGTGGCTGAGAAAGCAATCA+AGG 0.552965 4_1:-78561113 Msa0574830:CDS
AGCATTTGGCAGATGAATTG+TGG 0.556575 4_1:-78562279 Msa0574830:intron
CTATGCTCCTATTCTTCACC+AGG 0.562752 4_1:-78562122 Msa0574830:intron
GCTCTGTGTGTCATTGCACT+GGG 0.566525 4_1:-78559742 Msa0574830:CDS
AAGCCGGTAGCACAAAGATG+TGG 0.568257 4_1:-78561309 Msa0574830:CDS
TGGAGAAACTCCAGATCTCA+AGG 0.573409 4_1:-78560873 Msa0574830:intron
GCTTCTTTCATCAAAGGAGA+CGG 0.577964 4_1:-78559578 Msa0574830:CDS
AAGGAGACGGTCACTACTGA+AGG 0.581558 4_1:-78559565 Msa0574830:CDS
GATGAATCTTTATTGAAGCA+GGG 0.583312 4_1:-78559694 Msa0574830:CDS
CACTTGCCATATCACTTGCA+AGG 0.586602 4_1:+78559857 None:intergenic
CATGGGAGGTTAATTGAAGG+AGG 0.592569 4_1:+78562462 None:intergenic
AAATTCTTGATGTCTTCCCC+AGG 0.592666 4_1:+78562148 None:intergenic
TTGATGAGATCGTGTGGATG+AGG 0.593115 4_1:+78562662 None:intergenic
AAAGTCAAGCATGCATTAGT+CGG 0.594145 4_1:-78561541 Msa0574830:CDS
GAACATGGGAGGTTAATTGA+AGG 0.597020 4_1:+78562459 None:intergenic
GATTACACATGTCAATTAGA+GGG 0.597579 4_1:+78561371 None:intergenic
ACTTAAGTCTTTAGATGCTG+AGG 0.601367 4_1:-78559812 Msa0574830:CDS
AAGTGCAGAGGAATGTGTTG+AGG 0.602415 4_1:+78562515 None:intergenic
CTAAAGACTTAAGTGTGTTG+AGG 0.608231 4_1:+78559821 None:intergenic
AAATGGGTAACAAGAGAAGG+TGG 0.609234 4_1:-78562641 Msa0574830:CDS
AGATGCTTCATCTCTTGGAT+GGG 0.610544 4_1:-78561479 Msa0574830:CDS
ATTTCTCTACACCTGCTCCA+TGG 0.612721 4_1:-78560928 Msa0574830:CDS
TAGCACAAAGATGTGGGTGA+AGG 0.614670 4_1:-78561302 Msa0574830:intron
AGCCGGTAGCACAAAGATGT+GGG 0.619848 4_1:-78561308 Msa0574830:CDS
ATTGTTCAGGAACAAGAAGC+CGG 0.621234 4_1:-78561325 Msa0574830:CDS
TGTAACAGGTGAGCTTAGGT+GGG 0.630878 4_1:-78559924 Msa0574830:intron
GATAGAATAAGTTCCTGCCA+TGG 0.632180 4_1:+78560911 None:intergenic
TCATCATCGTTGAAGTGCAG+AGG 0.633506 4_1:+78562503 None:intergenic
GAATTGTGGGCAATGAAACT+GGG 0.634097 4_1:-78562265 Msa0574830:CDS
TGTATCGAGCTCAAATATGA+TGG 0.639565 4_1:-78560998 Msa0574830:CDS
AGGTCATTTGCAACACCAAG+AGG 0.646673 4_1:+78559787 None:intergenic
TTACTTACCGGGAACATGGG+AGG 0.654333 4_1:+78562448 None:intergenic
ACCCATTTGATGAGATCGTG+TGG 0.664082 4_1:+78562656 None:intergenic
TCAAGGTACGAAATACAGCA+AGG 0.687972 4_1:+78559767 None:intergenic
GTTGTGCTATCTTCACAGCA+CGG 0.695139 4_1:+78562609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATGAAAACTACTAT+TGG - chr4_1:78561424-78561443 Msa0574830:CDS 15.0%
!! TATATTTATTAACCATTCAA+TGG + chr4_1:78561572-78561591 None:intergenic 15.0%
!!! TTCAAATATACATGATTTTA+AGG + chr4_1:78561737-78561756 None:intergenic 15.0%
!!! AATGTTTTTATAGCAAATAT+TGG - chr4_1:78562113-78562132 Msa0574830:intron 15.0%
!! AAAAATAGTATAATGCTTTG+TGG - chr4_1:78560182-78560201 Msa0574830:intron 20.0%
!!! AATTTTTTAGTAAAAACCAG+TGG - chr4_1:78560254-78560273 Msa0574830:intron 20.0%
!!! GTCATTATACATAATTTTTC+AGG + chr4_1:78561820-78561839 None:intergenic 20.0%
!! TTTAGATCGTTAAGTATATA+TGG + chr4_1:78561892-78561911 None:intergenic 20.0%
!! AACATAATGCGTAAAAATAA+TGG + chr4_1:78562041-78562060 None:intergenic 20.0%
!! AAAGTTCATAGTTATTCTAT+AGG + chr4_1:78562087-78562106 None:intergenic 20.0%
!! TAAATCAAATTATGACCTTA+TGG + chr4_1:78562279-78562298 None:intergenic 20.0%
!!! ATTTACTTTTTTCATGTAAC+AGG - chr4_1:78562294-78562313 Msa0574830:intron 20.0%
!! GGTATTGAATTTGGTTAATA+TGG - chr4_1:78559449-78559468 Msa0574830:three_prime_UTR 25.0%
! TTGGTTAATATGGTTATAGT+TGG - chr4_1:78559459-78559478 Msa0574830:three_prime_UTR 25.0%
! TAAAAACCAGTGGTAAAATT+CGG - chr4_1:78560264-78560283 Msa0574830:intron 25.0%
! TAATTAATAGACACTGAGAT+AGG + chr4_1:78560424-78560443 None:intergenic 25.0%
! ATAACTAAATCGCGATAATT+TGG + chr4_1:78560471-78560490 None:intergenic 25.0%
! AATTGCTCATTTCAAAAGTA+GGG + chr4_1:78560501-78560520 None:intergenic 25.0%
! AAATTGCTCATTTCAAAAGT+AGG + chr4_1:78560502-78560521 None:intergenic 25.0%
!!! TACTTTTGAAATGAGCAATT+TGG - chr4_1:78560501-78560520 Msa0574830:intron 25.0%
!!! ACTTTTGAAATGAGCAATTT+GGG - chr4_1:78560502-78560521 Msa0574830:intron 25.0%
!! TATATCTCCAATTGTAGTTT+TGG - chr4_1:78560534-78560553 Msa0574830:intron 25.0%
!! ATATCTCCAATTGTAGTTTT+GGG - chr4_1:78560535-78560554 Msa0574830:intron 25.0%
!!! TAATTATTTTGAATGCCTTG+CGG - chr4_1:78560580-78560599 Msa0574830:intron 25.0%
! AGGAATTCAATATTTACCTT+AGG - chr4_1:78561095-78561114 Msa0574830:CDS 25.0%
! ATCCATAGCAAAGTAATAAA+GGG + chr4_1:78561152-78561171 None:intergenic 25.0%
!! AATACAGCTATAGAATTTTG+TGG + chr4_1:78561391-78561410 None:intergenic 25.0%
! ACATTCAAAATGGTTGTTAA+CGG + chr4_1:78561637-78561656 None:intergenic 25.0%
! GAGATTAATGACATTCAAAA+TGG + chr4_1:78561647-78561666 None:intergenic 25.0%
! ATATGTTTGAACACAAATTG+TGG - chr4_1:78561680-78561699 Msa0574830:intron 25.0%
! ATGTATATTTGAATCCAGTT+TGG - chr4_1:78561744-78561763 Msa0574830:intron 25.0%
! CATATATTAATCATCCAAAC+TGG + chr4_1:78561761-78561780 None:intergenic 25.0%
! CAGTTTGGATGATTAATATA+TGG - chr4_1:78561759-78561778 Msa0574830:intron 25.0%
!!! TGCGTAAAAATAATGGATTA+TGG + chr4_1:78562034-78562053 None:intergenic 25.0%
! TTCATAGTTATTCTATAGGA+AGG + chr4_1:78562083-78562102 None:intergenic 25.0%
!! CCAATTGATATGAAAGTTTT+GGG + chr4_1:78562238-78562257 None:intergenic 25.0%
!! ACCAATTGATATGAAAGTTT+TGG + chr4_1:78562239-78562258 None:intergenic 25.0%
! AGATTCATCATCCATTAATT+TGG + chr4_1:78562527-78562546 None:intergenic 25.0%
!! CTATAATTACAGACTTCTTT+TGG + chr4_1:78562603-78562622 None:intergenic 25.0%
AAAAGTAGAGTAGAGTGAAA+GGG - chr4_1:78559428-78559447 Msa0574830:three_prime_UTR 30.0%
GTTAATATGGTTATAGTTGG+TGG - chr4_1:78559462-78559481 Msa0574830:three_prime_UTR 30.0%
!! TTTCTTTCTAGAGTCTTGTT+TGG + chr4_1:78559877-78559896 None:intergenic 30.0%
GTCGTCAATGTTGAATAAAT+TGG - chr4_1:78559920-78559939 Msa0574830:intron 30.0%
GTTGAATAAATTGGACAATG+TGG - chr4_1:78559929-78559948 Msa0574830:intron 30.0%
! TTTGAAGCTTCTTCATGAAA+GGG - chr4_1:78559990-78560009 Msa0574830:intron 30.0%
TCGGTGTAAATAATGTTAGT+AGG - chr4_1:78560283-78560302 Msa0574830:intron 30.0%
CTCAGTGTCTATTAATTATG+TGG - chr4_1:78560426-78560445 Msa0574830:intron 30.0%
ATTGCTCATTTCAAAAGTAG+GGG + chr4_1:78560500-78560519 None:intergenic 30.0%
ACAATTGGAGATATACTATG+CGG + chr4_1:78560529-78560548 None:intergenic 30.0%
!! TATCTCCAATTGTAGTTTTG+GGG - chr4_1:78560536-78560555 Msa0574830:intron 30.0%
GCTCAAAATCAAGAAGAAAT+CGG + chr4_1:78560669-78560688 None:intergenic 30.0%
ATGGTAACAAGCAATCAAAT+GGG - chr4_1:78560812-78560831 Msa0574830:intron 30.0%
GATTACACATGTCAATTAGA+GGG + chr4_1:78560864-78560883 None:intergenic 30.0%
TGATTACACATGTCAATTAG+AGG + chr4_1:78560865-78560884 None:intergenic 30.0%
! CTTTAGATTTTTCTTTGCTG+AGG - chr4_1:78561075-78561094 Msa0574830:CDS 30.0%
CATCCATAGCAAAGTAATAA+AGG + chr4_1:78561153-78561172 None:intergenic 30.0%
! GATCTTTTCCTTCTTGATTA+TGG - chr4_1:78561183-78561202 Msa0574830:intron 30.0%
TCACAAATCCATAATCAAGA+AGG + chr4_1:78561194-78561213 None:intergenic 30.0%
GGTTAATTATGTCCATTGAA+TGG - chr4_1:78561557-78561576 Msa0574830:CDS 30.0%
ATTAGTATTGTCTCTTTCAC+CGG - chr4_1:78562147-78562166 Msa0574830:CDS 30.0%
TGAATAAGTTAAGAGGATTC+AGG + chr4_1:78562181-78562200 None:intergenic 30.0%
!!! TATGAAAGTTTTGGGAAGTT+GGG + chr4_1:78562230-78562249 None:intergenic 30.0%
!!! ATATGAAAGTTTTGGGAAGT+TGG + chr4_1:78562231-78562250 None:intergenic 30.0%
CCCAAAACTTTCATATCAAT+TGG - chr4_1:78562235-78562254 Msa0574830:CDS 30.0%
AATAATAGAAGGTCGTTTGT+TGG - chr4_1:78562336-78562355 Msa0574830:intron 30.0%
! TCATCATCCATTAATTTGGT+GGG + chr4_1:78562523-78562542 None:intergenic 30.0%
! TTCATCATCCATTAATTTGG+TGG + chr4_1:78562524-78562543 None:intergenic 30.0%
TGATGAATCTTTATTGAAGC+AGG - chr4_1:78562537-78562556 Msa0574830:CDS 30.0%
GATGAATCTTTATTGAAGCA+GGG - chr4_1:78562538-78562557 Msa0574830:CDS 30.0%
ATGTAATGAAAAACCTCTCA+AGG - chr4_1:78562623-78562642 Msa0574830:CDS 30.0%
! TAAGTGACATTGAACACTTT+TGG - chr4_1:78562739-78562758 Msa0574830:CDS 30.0%
!! CTACTCTACTTTTCTTCACT+AGG + chr4_1:78559421-78559440 None:intergenic 35.0%
GAAAAGTAGAGTAGAGTGAA+AGG - chr4_1:78559427-78559446 Msa0574830:three_prime_UTR 35.0%
!! GAGTGAAAGGGTATTGAATT+TGG - chr4_1:78559440-78559459 Msa0574830:three_prime_UTR 35.0%
!! AATATGGTTATAGTTGGTGG+TGG - chr4_1:78559465-78559484 Msa0574830:three_prime_UTR 35.0%
ATCAAATGGGTAACAAGAGA+AGG - chr4_1:78559588-78559607 Msa0574830:CDS 35.0%
TCGATTCCTCAAATGGTTTA+GGG - chr4_1:78559646-78559665 Msa0574830:CDS 35.0%
CAATTAGGTCAGTACCAATT+GGG + chr4_1:78559692-78559711 None:intergenic 35.0%
! ATTTTACTTACCGGGAACAT+GGG + chr4_1:78559790-78559809 None:intergenic 35.0%
! AATTTTACTTACCGGGAACA+TGG + chr4_1:78559791-78559810 None:intergenic 35.0%
! AGCTGGTAATTTTACTTACC+GGG + chr4_1:78559798-78559817 None:intergenic 35.0%
! GAGCTGGTAATTTTACTTAC+CGG + chr4_1:78559799-78559818 None:intergenic 35.0%
CATTCATGAACTAATTGAGC+TGG + chr4_1:78559815-78559834 None:intergenic 35.0%
! GTTTGAAGCTTCTTCATGAA+AGG - chr4_1:78559989-78560008 Msa0574830:intron 35.0%
! CAAAACTTGGATCTTTTTGG+TGG - chr4_1:78560013-78560032 Msa0574830:intron 35.0%
! TAGGAAGAGTGTAAGTTTGT+GGG + chr4_1:78560056-78560075 None:intergenic 35.0%
! ATAGGAAGAGTGTAAGTTTG+TGG + chr4_1:78560057-78560076 None:intergenic 35.0%
! ACTCTTCCTATTTTCTTTCC+TGG - chr4_1:78560066-78560085 Msa0574830:intron 35.0%
! CTCTTCCTATTTTCTTTCCT+GGG - chr4_1:78560067-78560086 Msa0574830:intron 35.0%
! TCTTCCTATTTTCTTTCCTG+GGG - chr4_1:78560068-78560087 Msa0574830:intron 35.0%
AACAGTAAGTAAAGTGTACC+TGG + chr4_1:78560131-78560150 None:intergenic 35.0%
! TTTACACCGAATTTTACCAC+TGG + chr4_1:78560273-78560292 None:intergenic 35.0%
AAATTCATGAATCACGAGAC+AGG - chr4_1:78560630-78560649 Msa0574830:intron 35.0%
AAAGTCAAGCATGCATTAGT+CGG - chr4_1:78560691-78560710 Msa0574830:intron 35.0%
!! TCAAGAGCATTCAAGTTACA+TGG - chr4_1:78560793-78560812 Msa0574830:intron 35.0%
CATGGTAACAAGCAATCAAA+TGG - chr4_1:78560811-78560830 Msa0574830:intron 35.0%
TCCAAATGCTAGAATTGTTC+AGG - chr4_1:78560894-78560913 Msa0574830:CDS 35.0%
TCCTGAACAATTCTAGCATT+TGG + chr4_1:78560898-78560917 None:intergenic 35.0%
TCAATATTTACCTTAGGCTG+TGG - chr4_1:78561101-78561120 Msa0574830:CDS 35.0%
GACCCTTTATTACTTTGCTA+TGG - chr4_1:78561147-78561166 Msa0574830:intron 35.0%
TGTATCGAGCTCAAATATGA+TGG - chr4_1:78561234-78561253 Msa0574830:intron 35.0%
!! CAAATATGATGGTGCTCTTT+TGG - chr4_1:78561245-78561264 Msa0574830:intron 35.0%
ATATGTGTGTTTGTGTGTGT+TGG - chr4_1:78561790-78561809 Msa0574830:intron 35.0%
! TGTTTTCCCTCTGTTCATTA+AGG - chr4_1:78562057-78562076 Msa0574830:intron 35.0%
TTAGTATTGTCTCTTTCACC+GGG - chr4_1:78562148-78562167 Msa0574830:CDS 35.0%
CAAGGGTTGAATAAGTTAAG+AGG + chr4_1:78562188-78562207 None:intergenic 35.0%
CTCTTAACTTATTCAACCCT+TGG - chr4_1:78562186-78562205 Msa0574830:CDS 35.0%
ATGTTAGCACAAGAACCATA+AGG - chr4_1:78562261-78562280 Msa0574830:CDS 35.0%
CTAAAGACTTAAGTGTGTTG+AGG + chr4_1:78562414-78562433 None:intergenic 35.0%
ACTTAAGTCTTTAGATGCTG+AGG - chr4_1:78562420-78562439 Msa0574830:intron 35.0%
ACACTTTCCCACCAAATTAA+TGG - chr4_1:78562513-78562532 Msa0574830:CDS 35.0%
! CTTTTGGATTCTGAACTGAA+TGG + chr4_1:78562587-78562606 None:intergenic 35.0%
AATGAAAAACCTCTCAAGGA+AGG - chr4_1:78562627-78562646 Msa0574830:CDS 35.0%
GGTAAAGCTTCTTTCATCAA+AGG - chr4_1:78562648-78562667 Msa0574830:CDS 35.0%
!! TTATAGTTGGTGGTGGTAGT+TGG - chr4_1:78559472-78559491 Msa0574830:three_prime_UTR 40.0%
ATCCACACGATCTCATCAAA+TGG - chr4_1:78559574-78559593 Msa0574830:CDS 40.0%
TCCACACGATCTCATCAAAT+GGG - chr4_1:78559575-78559594 Msa0574830:CDS 40.0%
AAATGGGTAACAAGAGAAGG+TGG - chr4_1:78559591-78559610 Msa0574830:CDS 40.0%
CTCGATTCCTCAAATGGTTT+AGG - chr4_1:78559645-78559664 Msa0574830:CDS 40.0%
CACTAACCCTAAACCATTTG+AGG + chr4_1:78559655-78559674 None:intergenic 40.0%
! CTCAAATGGTTTAGGGTTAG+TGG - chr4_1:78559653-78559672 Msa0574830:CDS 40.0%
GCTAAGGAAGATATCCCAAT+TGG - chr4_1:78559675-78559694 Msa0574830:CDS 40.0%
GCAATTAGGTCAGTACCAAT+TGG + chr4_1:78559693-78559712 None:intergenic 40.0%
TGTGTTGAGGAAGAGCAATT+AGG + chr4_1:78559707-78559726 None:intergenic 40.0%
GAACATGGGAGGTTAATTGA+AGG + chr4_1:78559776-78559795 None:intergenic 40.0%
TTGGACAATGTGGTAGCATT+TGG - chr4_1:78559939-78559958 Msa0574830:intron 40.0%
AGCATTTGGCAGATGAATTG+TGG - chr4_1:78559953-78559972 Msa0574830:intron 40.0%
GCATTTGGCAGATGAATTGT+GGG - chr4_1:78559954-78559973 Msa0574830:intron 40.0%
TGAATTGTGGGCAATGAAAC+TGG - chr4_1:78559966-78559985 Msa0574830:intron 40.0%
GAATTGTGGGCAATGAAACT+GGG - chr4_1:78559967-78559986 Msa0574830:intron 40.0%
CTTCATGAAAGGGCAAAACT+TGG - chr4_1:78560000-78560019 Msa0574830:intron 40.0%
! GGGCAAAACTTGGATCTTTT+TGG - chr4_1:78560010-78560029 Msa0574830:intron 40.0%
TGTGGGAGATTACTGATGTA+TGG + chr4_1:78560039-78560058 None:intergenic 40.0%
TCTTCCCCAGGAAAGAAAAT+AGG + chr4_1:78560075-78560094 None:intergenic 40.0%
AAATTCTTGATGTCTTCCCC+AGG + chr4_1:78560087-78560106 None:intergenic 40.0%
AAGTGTACCTGGTGAAGAAT+AGG + chr4_1:78560120-78560139 None:intergenic 40.0%
AGATAGGCAATTGTAGCTTC+TGG + chr4_1:78560408-78560427 None:intergenic 40.0%
TGACACCCCAAAACTACAAT+TGG + chr4_1:78560544-78560563 None:intergenic 40.0%
! GAGATGAAGCATCTACTTCT+TGG + chr4_1:78560747-78560766 None:intergenic 40.0%
GAAGTAGATGCTTCATCTCT+TGG - chr4_1:78560748-78560767 Msa0574830:intron 40.0%
TAGATGCTTCATCTCTTGGA+TGG - chr4_1:78560752-78560771 Msa0574830:intron 40.0%
AGATGCTTCATCTCTTGGAT+GGG - chr4_1:78560753-78560772 Msa0574830:intron 40.0%
!! TCAATTAGAGGGAGCATCAT+GGG + chr4_1:78560853-78560872 None:intergenic 40.0%
ATTGTTCAGGAACAAGAAGC+CGG - chr4_1:78560907-78560926 Msa0574830:CDS 40.0%
TGAGCTCGATACAGTCATAA+GGG + chr4_1:78561227-78561246 None:intergenic 40.0%
TTGAGCTCGATACAGTCATA+AGG + chr4_1:78561228-78561247 None:intergenic 40.0%
GATAGAATAAGTTCCTGCCA+TGG + chr4_1:78561324-78561343 None:intergenic 40.0%
CTATCTCAGCTAAATCTAGC+TGG - chr4_1:78561339-78561358 Msa0574830:CDS 40.0%
GTTAGCGCTGTTAAAGTATG+TGG - chr4_1:78561536-78561555 Msa0574830:CDS 40.0%
GCTTACTGTACTTTGCAGAA+AGG - chr4_1:78561972-78561991 Msa0574830:intron 40.0%
TAGTATTGTCTCTTTCACCG+GGG - chr4_1:78562149-78562168 Msa0574830:CDS 40.0%
TTCATGTAACAGGTGAGCTT+AGG - chr4_1:78562304-78562323 Msa0574830:intron 40.0%
GGTGGGCAAGAAATAATAGA+AGG - chr4_1:78562325-78562344 Msa0574830:intron 40.0%
AGTACTCCTTGCAAGTGATA+TGG - chr4_1:78562369-78562388 Msa0574830:intron 40.0%
TCAAGGTACGAAATACAGCA+AGG + chr4_1:78562468-78562487 None:intergenic 40.0%
AATGACACACAGAGCAATCA+AGG + chr4_1:78562485-78562504 None:intergenic 40.0%
GCTTCTTTCATCAAAGGAGA+CGG - chr4_1:78562654-78562673 Msa0574830:CDS 40.0%
!! TGGTGGTGGTAGTTGGAAAA+CGG - chr4_1:78559479-78559498 Msa0574830:three_prime_UTR 45.0%
GATGAAGATGCGCATGTTAG+TGG + chr4_1:78559540-78559559 None:intergenic 45.0%
TTGATGAGATCGTGTGGATG+AGG + chr4_1:78559573-78559592 None:intergenic 45.0%
ACCCATTTGATGAGATCGTG+TGG + chr4_1:78559579-78559598 None:intergenic 45.0%
GTTGTGCTATCTTCACAGCA+CGG + chr4_1:78559626-78559645 None:intergenic 45.0%
GCACAACTCGATTCCTCAAA+TGG - chr4_1:78559639-78559658 Msa0574830:CDS 45.0%
! TGGTTTAGGGTTAGTGGCTA+AGG - chr4_1:78559659-78559678 Msa0574830:CDS 45.0%
AAGTGCAGAGGAATGTGTTG+AGG + chr4_1:78559720-78559739 None:intergenic 45.0%
TCATCATCGTTGAAGTGCAG+AGG + chr4_1:78559732-78559751 None:intergenic 45.0%
CATGGGAGGTTAATTGAAGG+AGG + chr4_1:78559773-78559792 None:intergenic 45.0%
CAATTAACCTCCCATGTTCC+CGG - chr4_1:78559777-78559796 Msa0574830:CDS 45.0%
CTATGCTCCTATTCTTCACC+AGG - chr4_1:78560110-78560129 Msa0574830:intron 45.0%
ATATGCACTGCAGTGAAGAG+AGG + chr4_1:78560208-78560227 None:intergenic 45.0%
ACATTGCTCTTGTGAGGACT+GGG + chr4_1:78560323-78560342 None:intergenic 45.0%
AGTTGCACATTGCTCTTGTG+AGG + chr4_1:78560329-78560348 None:intergenic 45.0%
!! CTGGTGTTGGTCACAAATGT+TGG + chr4_1:78560389-78560408 None:intergenic 45.0%
GCAATTGTAGCTTCTGGTGT+TGG + chr4_1:78560402-78560421 None:intergenic 45.0%
ACACCAGATAAGCATCCGTT+TGG - chr4_1:78560718-78560737 Msa0574830:intron 45.0%
TCTACTTCTTGGCCACCAAA+CGG + chr4_1:78560736-78560755 None:intergenic 45.0%
!! GTCAATTAGAGGGAGCATCA+TGG + chr4_1:78560854-78560873 None:intergenic 45.0%
TAGCACAAAGATGTGGGTGA+AGG - chr4_1:78560930-78560949 Msa0574830:CDS 45.0%
TGTGGCTGAGAAAGCAATCA+AGG - chr4_1:78561119-78561138 Msa0574830:intron 45.0%
GGAGCAGGTGTAGAGAAATT+TGG + chr4_1:78561303-78561322 None:intergenic 45.0%
ATTTCTCTACACCTGCTCCA+TGG - chr4_1:78561304-78561323 Msa0574830:CDS 45.0%
TGGAGAAACTCCAGATCTCA+AGG - chr4_1:78561359-78561378 Msa0574830:CDS 45.0%
GTGGAAGATACCTTGAGATC+TGG + chr4_1:78561372-78561391 None:intergenic 45.0%
GGAAGGCCTTAATGAACAGA+GGG + chr4_1:78562066-78562085 None:intergenic 45.0%
AGGAAGGCCTTAATGAACAG+AGG + chr4_1:78562067-78562086 None:intergenic 45.0%
!! GCACAACTGATTTGAGCCAA+GGG + chr4_1:78562205-78562224 None:intergenic 45.0%
!! AGCACAACTGATTTGAGCCA+AGG + chr4_1:78562206-78562225 None:intergenic 45.0%
ATGTAACAGGTGAGCTTAGG+TGG - chr4_1:78562307-78562326 Msa0574830:intron 45.0%
TGTAACAGGTGAGCTTAGGT+GGG - chr4_1:78562308-78562327 Msa0574830:intron 45.0%
CACTTGCCATATCACTTGCA+AGG + chr4_1:78562378-78562397 None:intergenic 45.0%
AGGTCATTTGCAACACCAAG+AGG + chr4_1:78562448-78562467 None:intergenic 45.0%
! TTATTGAAGCAGGGTGCTTC+AGG - chr4_1:78562547-78562566 Msa0574830:CDS 45.0%
GAAGCTTTACCTTCCTTGAG+AGG + chr4_1:78562639-78562658 None:intergenic 45.0%
TTACTTACCGGGAACATGGG+AGG + chr4_1:78559787-78559806 None:intergenic 50.0%
CACATTGCTCTTGTGAGGAC+TGG + chr4_1:78560324-78560343 None:intergenic 50.0%
TGCCTTGCGGATTTGCAGTT+TGG - chr4_1:78560593-78560612 Msa0574830:intron 50.0%
TGCCAAACTGCAAATCCGCA+AGG + chr4_1:78560598-78560617 None:intergenic 50.0%
CCACCAAACGGATGCTTATC+TGG + chr4_1:78560724-78560743 None:intergenic 50.0%
CCAGATAAGCATCCGTTTGG+TGG - chr4_1:78560721-78560740 Msa0574830:intron 50.0%
AAGCCGGTAGCACAAAGATG+TGG - chr4_1:78560923-78560942 Msa0574830:CDS 50.0%
AGCCGGTAGCACAAAGATGT+GGG - chr4_1:78560924-78560943 Msa0574830:CDS 50.0%
CACCCACATCTTTGTGCTAC+CGG + chr4_1:78560929-78560948 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTCT+GGG + chr4_1:78560992-78561011 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTC+TGG + chr4_1:78560993-78561012 None:intergenic 50.0%
! TCTTTTGGATGCTGCGAGCA+TGG - chr4_1:78561260-78561279 Msa0574830:intron 50.0%
ATAAGTTCCTGCCATGGAGC+AGG + chr4_1:78561318-78561337 None:intergenic 50.0%
! GAGGATTCAGGTTCAAACCC+CGG + chr4_1:78562169-78562188 None:intergenic 50.0%
TTAGATGCTGAGGCTCCTCT+TGG - chr4_1:78562430-78562449 Msa0574830:intron 50.0%
! TGCTCTGTGTGTCATTGCAC+TGG - chr4_1:78562489-78562508 Msa0574830:CDS 50.0%
! GCTCTGTGTGTCATTGCACT+GGG - chr4_1:78562490-78562509 Msa0574830:CDS 50.0%
AAGGAGACGGTCACTACTGA+AGG - chr4_1:78562667-78562686 Msa0574830:CDS 50.0%
GTCTGGGAGAGGAGTCATGA+AGG + chr4_1:78560976-78560995 None:intergenic 55.0%
TGTGTGTGTGTGTCTGGGAG+AGG + chr4_1:78560987-78561006 None:intergenic 55.0%
GCTTTCTCAGCCACAGCCTA+AGG + chr4_1:78561114-78561133 None:intergenic 55.0%
CTCTACACCTGCTCCATGGC+AGG - chr4_1:78561308-78561327 Msa0574830:CDS 60.0%
GATGCTGCGAGCATGGCAGC+TGG - chr4_1:78561267-78561286 Msa0574830:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 78559399 78562855 78559399 ID=Msa0574830;Name=Msa0574830
chr4_1 mRNA 78559399 78562855 78559399 ID=Msa0574830-mRNA-1;Parent=Msa0574830;Name=Msa0574830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|1|1|1|1|5|162|479
chr4_1 exon 78559399 78559938 78559399 ID=Msa0574830-mRNA-1:exon:27836;Parent=Msa0574830-mRNA-1
chr4_1 exon 78560874 78561137 78560874 ID=Msa0574830-mRNA-1:exon:27835;Parent=Msa0574830-mRNA-1
chr4_1 exon 78561303 78561602 78561303 ID=Msa0574830-mRNA-1:exon:27834;Parent=Msa0574830-mRNA-1
chr4_1 exon 78562123 78562289 78562123 ID=Msa0574830-mRNA-1:exon:27833;Parent=Msa0574830-mRNA-1
chr4_1 exon 78562456 78562855 78562456 ID=Msa0574830-mRNA-1:exon:27832;Parent=Msa0574830-mRNA-1
chr4_1 five_prime_UTR 78562787 78562855 78562787 ID=Msa0574830-mRNA-1:five_prime_utr;Parent=Msa0574830-mRNA-1
chr4_1 CDS 78562456 78562786 78562456 ID=Msa0574830-mRNA-1:cds;Parent=Msa0574830-mRNA-1
chr4_1 CDS 78562123 78562289 78562123 ID=Msa0574830-mRNA-1:cds;Parent=Msa0574830-mRNA-1
chr4_1 CDS 78561303 78561602 78561303 ID=Msa0574830-mRNA-1:cds;Parent=Msa0574830-mRNA-1
chr4_1 CDS 78560874 78561137 78560874 ID=Msa0574830-mRNA-1:cds;Parent=Msa0574830-mRNA-1
chr4_1 CDS 78559561 78559938 78559561 ID=Msa0574830-mRNA-1:cds;Parent=Msa0574830-mRNA-1
chr4_1 three_prime_UTR 78559399 78559560 78559399 ID=Msa0574830-mRNA-1:three_prime_utr;Parent=Msa0574830-mRNA-1
Gene Sequence

>Msa0574830

ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGCGCATCTTCATCACGAATAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATAGCACAACTCGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTCTGCACTTCAACGATGATGATCGCAACTCTCACTCTCTCCTCCTTCAATTAACCTCCCATGTTCCCGATGAATTGTGGGCAATGAAACTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCACTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAGCATCCGTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCAATGTCAGCAGTTTCATCAAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAGCCGGTAGCACAAAGATGTGGGTGAAGGCTGTGGCTGAGAAAGCAATCAAGGAAGATGACCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCAGCTGGAGTTTCTTCACCAAATTTCTCTACACCTGCTCCATGGCAGGAACTTATTCTATCTCAGCTAAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGGCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCAAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGACGGTCACTACTGAAGGCTAA

Protein sequence

>Msa0574830

MVIVGGGSWKTAMLMSSSLSHVRPLTCASSSRIAPHPHDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNDDDRNSHSLLLQLTSHVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMWVKAVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLDAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTTEG*