Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118960 | sp|Q9SJ66|SPP2_ARATH | 77.848 | 316 | 69 | 1 | 1 | 316 | 1 | 315 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118960 | Q9FQ10 | 98.738 | 317 | 4 | 0 | 1 | 317 | 1 | 317 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023190 | Msa0118960 | 0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0035090 | Msa0118960 | 0.819818 | 9.509636e-53 | -8.615850e-47 |
| Msa0046670 | Msa0118960 | 0.803090 | 4.114623e-49 | -8.615850e-47 |
| Msa0071020 | Msa0118960 | 0.820878 | 5.436098e-53 | -8.615850e-47 |
| Msa0083570 | Msa0118960 | 0.808117 | 3.626104e-50 | -8.615850e-47 |
| Msa0086700 | Msa0118960 | 0.811428 | 7.035093e-51 | -8.615850e-47 |
| Msa0092750 | Msa0118960 | 0.802376 | 5.777288e-49 | -8.615850e-47 |
| Msa0093830 | Msa0118960 | 0.800255 | 1.570351e-48 | -8.615850e-47 |
| Msa0118960 | Msa0128840 | 0.815709 | 8.046542e-52 | -8.615850e-47 |
| Msa0118960 | Msa0130120 | 0.823617 | 1.257907e-53 | -8.615850e-47 |
| Msa0118960 | Msa0143360 | 0.825510 | 4.507508e-54 | -8.615850e-47 |
| Msa0118960 | Msa0181380 | 0.825134 | 5.530120e-54 | -8.615850e-47 |
| Msa0118960 | Msa0206970 | 0.804548 | 2.048724e-49 | -8.615850e-47 |
| Msa0118960 | Msa0219550 | 0.829706 | 4.429566e-55 | -8.615850e-47 |
| Msa0118960 | Msa0236350 | 0.800740 | 1.250430e-48 | -8.615850e-47 |
| Msa0118960 | Msa0266010 | 0.812613 | 3.882121e-51 | -8.615850e-47 |
| Msa0118960 | Msa0270640 | 0.800847 | 1.189292e-48 | -8.615850e-47 |
| Msa0118960 | Msa0274870 | 0.802967 | 4.363998e-49 | -8.615850e-47 |
| Msa0118960 | Msa0281310 | 0.817685 | 2.900779e-52 | -8.615850e-47 |
| Msa0118960 | Msa0285710 | 0.813969 | 1.955503e-51 | -8.615850e-47 |
| Msa0118960 | Msa0290040 | 0.831311 | 1.793930e-55 | -8.615850e-47 |
| Msa0118960 | Msa0307750 | 0.809272 | 2.054240e-50 | -8.615850e-47 |
| Msa0118960 | Msa0321100 | 0.833669 | 4.671113e-56 | -8.615850e-47 |
| Msa0118960 | Msa0361500 | 0.809365 | 1.961333e-50 | -8.615850e-47 |
| Msa0118960 | Msa0387120 | 0.802877 | 4.554109e-49 | -8.615850e-47 |
| Msa0118960 | Msa0434630 | 0.822209 | 2.677604e-53 | -8.615850e-47 |
| Msa0118960 | Msa0436310 | 0.818025 | 2.431033e-52 | -8.615850e-47 |
| Msa0118960 | Msa0456940 | 0.808647 | 2.794773e-50 | -8.615850e-47 |
| Msa0118960 | Msa0463580 | 0.804277 | 2.334051e-49 | -8.615850e-47 |
| Msa0118960 | Msa0476820 | 0.821040 | 4.987591e-53 | -8.615850e-47 |
| Msa0118960 | Msa0478750 | 0.804814 | 1.802786e-49 | -8.615850e-47 |
| Msa0118960 | Msa0486200 | 0.807463 | 4.993163e-50 | -8.615850e-47 |
| Msa0118960 | Msa0574830 | 0.810454 | 1.143379e-50 | -8.615850e-47 |
| Msa0118960 | Msa0583810 | 0.801565 | 8.480161e-49 | -8.615850e-47 |
| Msa0118960 | Msa0587060 | 0.803874 | 2.831006e-49 | -8.615850e-47 |
| Msa0118960 | Msa0619170 | 0.818382 | 2.018546e-52 | -8.615850e-47 |
| Msa0118960 | Msa0622400 | 0.809278 | 2.047863e-50 | -8.615850e-47 |
| Msa0118960 | Msa0712070 | 0.834579 | 2.762246e-56 | -8.615850e-47 |
| Msa0118960 | Msa0734430 | 0.839559 | 1.473612e-57 | -8.615850e-47 |
| Msa0118960 | Msa0814760 | 0.830029 | 3.696668e-55 | -8.615850e-47 |
| Msa0118960 | Msa0815340 | 0.801493 | 8.772171e-49 | -8.615850e-47 |
| Msa0118960 | Msa0830410 | 0.843899 | 1.054776e-58 | -8.615850e-47 |
| Msa0118960 | Msa0968010 | 0.812108 | 5.004553e-51 | -8.615850e-47 |
| Msa0118960 | Msa1042380 | 0.827020 | 1.970147e-54 | -8.615850e-47 |
| Msa0118960 | Msa1125100 | 0.816098 | 6.588395e-52 | -8.615850e-47 |
| Msa0118960 | Msa1125150 | 0.820656 | 6.112071e-53 | -8.615850e-47 |
| Msa0118960 | Msa1173020 | 0.800509 | 1.394024e-48 | -8.615850e-47 |
| Msa0118960 | Msa1206440 | 0.804729 | 1.878582e-49 | -8.615850e-47 |
| Msa0118960 | Msa1217020 | 0.810859 | 9.349565e-51 | -8.615850e-47 |
| Msa0118960 | Msa1217170 | 0.840995 | 6.214117e-58 | -8.615850e-47 |
| Msa0118960 | Msa1224140 | 0.811478 | 6.862421e-51 | -8.615850e-47 |
| Msa0118960 | Msa1224150 | 0.838367 | 3.000290e-57 | -8.615850e-47 |
| Msa0118960 | Msa1244260 | 0.806477 | 8.071966e-50 | -8.615850e-47 |
| Msa0118960 | Msa1262630 | 0.829234 | 5.769370e-55 | -8.615850e-47 |
| Msa0118960 | Msa1263460 | 0.817854 | 2.657579e-52 | -8.615850e-47 |
| Msa0118960 | Msa1302750 | 0.823268 | 1.517787e-53 | -8.615850e-47 |
| Msa0118960 | Msa1348770 | 0.807541 | 4.806251e-50 | -8.615850e-47 |
| Msa0118960 | Msa1387650 | 0.815940 | 7.143806e-52 | -8.615850e-47 |
| Msa0118960 | Msa1407610 | 0.812648 | 3.813699e-51 | -8.615850e-47 |
| Msa0118960 | Msa1419040 | 0.806798 | 6.905185e-50 | -8.615850e-47 |
| Msa0118960 | Msa1424240 | 0.805258 | 1.456184e-49 | -8.615850e-47 |
| Msa0118960 | Msa1429390 | 0.824677 | 7.089491e-54 | -8.615850e-47 |
| Msa0118960 | Msa1430940 | 0.807935 | 3.963166e-50 | -8.615850e-47 |
| Msa0118960 | Msa1437690 | 0.842578 | 2.374464e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118960 | MtrunA17_Chr1g0176471 | 98.738 | 317 | 4 | 0 | 1 | 317 | 1 | 317 | 0.0 | 643 |
| Msa0118960 | MtrunA17_Chr1g0170411 | 68.889 | 315 | 96 | 1 | 1 | 315 | 1 | 313 | 3.02e-160 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118960 | AT2G35840.1 | 77.848 | 316 | 69 | 1 | 1 | 316 | 1 | 315 | 0.0 | 510 |
| Msa0118960 | AT2G35840.3 | 77.848 | 316 | 69 | 1 | 1 | 316 | 1 | 315 | 0.0 | 510 |
| Msa0118960 | AT2G35840.2 | 77.848 | 316 | 69 | 1 | 1 | 316 | 1 | 315 | 0.0 | 510 |
| Msa0118960 | AT2G35840.4 | 77.848 | 316 | 69 | 1 | 1 | 316 | 1 | 315 | 0.0 | 510 |
| Msa0118960 | AT1G51420.1 | 68.454 | 317 | 98 | 2 | 1 | 316 | 1 | 316 | 1.27e-158 | 450 |
| Msa0118960 | AT1G51420.3 | 68.454 | 317 | 98 | 2 | 1 | 316 | 2 | 317 | 1.28e-158 | 450 |
| Msa0118960 | AT1G51420.4 | 68.454 | 317 | 98 | 2 | 1 | 316 | 2 | 317 | 1.28e-158 | 450 |
| Msa0118960 | AT1G51420.2 | 68.454 | 317 | 98 | 2 | 1 | 316 | 2 | 317 | 1.28e-158 | 450 |
| Msa0118960 | AT3G52340.2 | 63.323 | 319 | 115 | 2 | 1 | 318 | 1 | 318 | 1.21e-148 | 424 |
| Msa0118960 | AT3G52340.7 | 63.323 | 319 | 115 | 2 | 1 | 318 | 1 | 318 | 1.21e-148 | 424 |
| Msa0118960 | AT3G52340.1 | 63.323 | 319 | 115 | 2 | 1 | 318 | 1 | 318 | 1.21e-148 | 424 |
| Msa0118960 | AT3G52340.3 | 63.323 | 319 | 115 | 2 | 1 | 318 | 1 | 318 | 1.21e-148 | 424 |
| Msa0118960 | AT3G52340.4 | 63.323 | 319 | 115 | 2 | 1 | 318 | 13 | 330 | 2.00e-148 | 424 |
| Msa0118960 | AT3G52340.5 | 63.323 | 319 | 115 | 2 | 1 | 318 | 13 | 330 | 2.00e-148 | 424 |
| Msa0118960 | AT3G52340.6 | 63.323 | 319 | 115 | 2 | 1 | 318 | 42 | 359 | 5.33e-148 | 424 |
| Msa0118960 | AT3G54270.1 | 58.044 | 317 | 130 | 2 | 1 | 315 | 1 | 316 | 2.60e-133 | 385 |
Find 98 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTCCTTGTCCCATTTC+TGG | 0.095011 | 1_3:+42243326 | None:intergenic |
| GCCTCAGAGCGCTGTGCATC+TGG | 0.152598 | 1_3:-42242459 | Msa0118960:CDS |
| AGAGGCTCTTTCTAAGATTT+TGG | 0.167196 | 1_3:-42243026 | Msa0118960:CDS |
| TTCAGCATTCCAGGAGTTTA+TGG | 0.202008 | 1_3:-42242687 | Msa0118960:CDS |
| TCTGAGGCATGCAGAATCTT+AGG | 0.238626 | 1_3:+42242474 | None:intergenic |
| GAATAGCTCGGCATCATTTC+CGG | 0.265204 | 1_3:+42242707 | None:intergenic |
| CATCTCTTGGGGACAGGTTT+GGG | 0.285854 | 1_3:+42242403 | None:intergenic |
| TCTAATCACAGGATCAAGTT+AGG | 0.320501 | 1_3:-42243898 | Msa0118960:intron |
| ACATCTCTTGGGGACAGGTT+TGG | 0.339450 | 1_3:+42242402 | None:intergenic |
| TTCAAGAATTGAACCAGAAA+TGG | 0.339783 | 1_3:-42243339 | Msa0118960:CDS |
| GTGGGAACTGAGATTACTTA+TGG | 0.363501 | 1_3:-42243391 | Msa0118960:CDS |
| ACAGACATGATGGTTATATC+TGG | 0.375892 | 1_3:+42243412 | None:intergenic |
| GCTGTTTATTGCTGCTATAA+AGG | 0.379309 | 1_3:-42242268 | Msa0118960:CDS |
| TCTTTGCTGGTGTTCTCAAC+TGG | 0.382613 | 1_3:-42243487 | Msa0118960:CDS |
| ATATCGCCACGATTCTTTGC+TGG | 0.384082 | 1_3:-42243500 | Msa0118960:CDS |
| GTTATATCTGGAGTTATCAT+AGG | 0.393312 | 1_3:+42243424 | None:intergenic |
| TTTGAGGTTCAATGCCCTTT+GGG | 0.393753 | 1_3:-42243530 | Msa0118960:CDS |
| GCCGAGCTATTCAGCATTCC+AGG | 0.396491 | 1_3:-42242696 | Msa0118960:CDS |
| CTCAGTTGTTTGTAGAGTAA+AGG | 0.417936 | 1_3:+42243457 | None:intergenic |
| CAATGTCTGAAACATCTCTT+GGG | 0.420133 | 1_3:+42242391 | None:intergenic |
| CCAATGTCTGAAACATCTCT+TGG | 0.421240 | 1_3:+42242390 | None:intergenic |
| GCCACTGCAGTAATTCCTCT+TGG | 0.422000 | 1_3:+42242520 | None:intergenic |
| GCGGCAATAGGATCGAATTA+AGG | 0.425135 | 1_3:-42244522 | Msa0118960:five_prime_UTR |
| GTGAAGTGGAAGGGAAGGAA+TGG | 0.430938 | 1_3:+42244427 | None:intergenic |
| TGCTGGTGTTCTCAACTGGC+AGG | 0.441395 | 1_3:-42243483 | Msa0118960:CDS |
| GAAGGAATGGGAGAAGAAGA+AGG | 0.441637 | 1_3:+42244440 | None:intergenic |
| TTAAGGTATTCTTATTCGCT+TGG | 0.449661 | 1_3:-42244505 | Msa0118960:five_prime_UTR |
| CTAATCACAGGATCAAGTTA+GGG | 0.450578 | 1_3:-42243897 | Msa0118960:intron |
| TTTGTCTGTTAAGTGAAAAG+TGG | 0.454824 | 1_3:-42242317 | Msa0118960:CDS |
| TGAAGTGGAAGGGAAGGAAT+GGG | 0.462780 | 1_3:+42244428 | None:intergenic |
| TTAGTAGAAGAAGCGGCAAT+AGG | 0.471653 | 1_3:-42244534 | Msa0118960:five_prime_UTR |
| AGTACCTGAGGCTTAAGTTC+AGG | 0.473435 | 1_3:+42243280 | None:intergenic |
| GCAGGCAGAAACAGAACAAC+GGG | 0.475371 | 1_3:-42243098 | Msa0118960:intron |
| CTTCCCTTCCACTTCACTAC+CGG | 0.476328 | 1_3:-42244421 | Msa0118960:intron |
| CTGAAACATCTCTTGGGGAC+AGG | 0.480413 | 1_3:+42242397 | None:intergenic |
| TCCAGGAGTTTATGGTGTCA+TGG | 0.483135 | 1_3:-42242679 | Msa0118960:intron |
| CCTCAGAGCGCTGTGCATCT+GGG | 0.486786 | 1_3:-42242458 | Msa0118960:CDS |
| CAAAGAATCGTGGCGATATG+AGG | 0.489310 | 1_3:+42243504 | None:intergenic |
| CCACTGCAGTAATTCCTCTT+GGG | 0.490113 | 1_3:+42242521 | None:intergenic |
| CCAAGAGATGTTTCAGACAT+TGG | 0.490731 | 1_3:-42242390 | Msa0118960:CDS |
| GTTTCCTGAACTTAAGCCTC+AGG | 0.490979 | 1_3:-42243284 | Msa0118960:intron |
| AAATCGATGGTTCCCGATGA+TGG | 0.491125 | 1_3:-42243367 | Msa0118960:CDS |
| AAGGAATGGGAGAAGAAGAA+GGG | 0.492050 | 1_3:+42244441 | None:intergenic |
| TCAAGAATTGAACCAGAAAT+GGG | 0.492584 | 1_3:-42243338 | Msa0118960:CDS |
| TCTTGAACCCACCCATCATC+GGG | 0.498927 | 1_3:+42243355 | None:intergenic |
| CTGAGGCATGCAGAATCTTA+GGG | 0.499882 | 1_3:+42242475 | None:intergenic |
| ACCATGACACCATAAACTCC+TGG | 0.503899 | 1_3:+42242678 | None:intergenic |
| GCCCAAGTTAAAATGACCTA+TGG | 0.506142 | 1_3:+42242425 | None:intergenic |
| CCTGGTAATACTCTAGTTTG+TGG | 0.510248 | 1_3:-42242735 | Msa0118960:CDS |
| TTCTTGAACCCACCCATCAT+CGG | 0.513294 | 1_3:+42243354 | None:intergenic |
| CTCAGTTCCCACAGACATGA+TGG | 0.515217 | 1_3:+42243402 | None:intergenic |
| TACCATTGTGTGATCGAGAT+CGG | 0.537477 | 1_3:+42243824 | None:intergenic |
| GAGACTGAGGGAAAGCTACC+TGG | 0.551726 | 1_3:-42242753 | Msa0118960:CDS |
| CGATGGTTCCCGATGATGGG+TGG | 0.553320 | 1_3:-42243363 | Msa0118960:CDS |
| ACGTGCAGAAGTTGAGAACT+CGG | 0.555017 | 1_3:-42242292 | Msa0118960:CDS |
| ACTCTAGTTTGTGGTGACTC+CGG | 0.555273 | 1_3:-42242726 | Msa0118960:CDS |
| AATCGATGGTTCCCGATGAT+GGG | 0.556521 | 1_3:-42243366 | Msa0118960:CDS |
| GACATATTACCACAAGGTGC+TGG | 0.557425 | 1_3:-42242813 | Msa0118960:CDS |
| TCCTGGAATGCTGAATAGCT+CGG | 0.559117 | 1_3:+42242695 | None:intergenic |
| GCGATATGAGGCTTCCCAAA+GGG | 0.561720 | 1_3:+42243516 | None:intergenic |
| AGATATAACCATCATGTCTG+TGG | 0.566248 | 1_3:-42243410 | Msa0118960:CDS |
| ACACACATTAGTAGAAGAAG+CGG | 0.567175 | 1_3:-42244541 | Msa0118960:five_prime_UTR |
| TGAGTAAGTAACCAAGGTGA+AGG | 0.573083 | 1_3:-42244578 | None:intergenic |
| AAGTTAGGGATTGTACATCA+TGG | 0.577235 | 1_3:-42243883 | Msa0118960:exon |
| CCACAAACTAGAGTATTACC+AGG | 0.577400 | 1_3:+42242735 | None:intergenic |
| GATATAACCATCATGTCTGT+GGG | 0.578577 | 1_3:-42243409 | Msa0118960:CDS |
| CGGTAGTGAAGTGGAAGGGA+AGG | 0.583511 | 1_3:+42244422 | None:intergenic |
| GGACAAGGACATTGTCATTG+AGG | 0.590293 | 1_3:-42243317 | Msa0118960:CDS |
| TCATCAATCAACCTTCACCT+TGG | 0.592137 | 1_3:+42244567 | None:intergenic |
| AGAAGAAGAAGGGTGGTGAG+TGG | 0.595202 | 1_3:+42244451 | None:intergenic |
| GAATGGGAGAAGAAGAAGGG+TGG | 0.601091 | 1_3:+42244444 | None:intergenic |
| GATTACTTATGGAAAATCGA+TGG | 0.601557 | 1_3:-42243380 | Msa0118960:CDS |
| GATGGTTCCCGATGATGGGT+GGG | 0.601629 | 1_3:-42243362 | Msa0118960:CDS |
| GCGAACTATTCTCTGCGTCA+TGG | 0.603872 | 1_3:+42243554 | None:intergenic |
| TGACCTTTGCCAGCACCTTG+TGG | 0.606824 | 1_3:+42242804 | None:intergenic |
| GATGTTAAAATAATATATAG+CGG | 0.612438 | 1_3:-42242849 | Msa0118960:CDS |
| TCTGGGATTATACAAGCCAT+AGG | 0.615679 | 1_3:-42242441 | Msa0118960:CDS |
| TTACCACAAGGTGCTGGCAA+AGG | 0.617832 | 1_3:-42242807 | Msa0118960:CDS |
| GGCGATATGAGGCTTCCCAA+AGG | 0.620433 | 1_3:+42243515 | None:intergenic |
| AAGAAGGGTGGTGAGTGGTG+AGG | 0.622953 | 1_3:+42244456 | None:intergenic |
| ATTACCGGTAGTGAAGTGGA+AGG | 0.628840 | 1_3:+42244417 | None:intergenic |
| CCCAGATGCACAGCGCTCTG+AGG | 0.646146 | 1_3:+42242458 | None:intergenic |
| CAATGCTAAGCAAGTGACAG+AGG | 0.647164 | 1_3:-42243044 | Msa0118960:CDS |
| ATATAGCGGAGGAGTTGACA+TGG | 0.647276 | 1_3:-42242835 | Msa0118960:CDS |
| GTTAAAATAATATATAGCGG+AGG | 0.662156 | 1_3:-42242846 | Msa0118960:CDS |
| TTCCGATCTCGATCACACAA+TGG | 0.663470 | 1_3:-42243826 | Msa0118960:intron |
| GTAGGTAAGCAACGCCCAAG+AGG | 0.666196 | 1_3:-42242535 | Msa0118960:intron |
| ATAGAGTGAGTAAGTAACCA+AGG | 0.667252 | 1_3:-42244584 | None:intergenic |
| CCCAAGAGGAATTACTGCAG+TGG | 0.669784 | 1_3:-42242521 | Msa0118960:CDS |
| AAGAGATATCAATCATACAG+TGG | 0.672174 | 1_3:+42242242 | None:intergenic |
| TGCAGGCAGAAACAGAACAA+CGG | 0.681696 | 1_3:-42243099 | Msa0118960:intron |
| CTTTACTCTACAAACAACTG+AGG | 0.684288 | 1_3:-42243456 | Msa0118960:CDS |
| TTACCGGTAGTGAAGTGGAA+GGG | 0.688968 | 1_3:+42244418 | None:intergenic |
| AGAACACCAGCAAAGAATCG+TGG | 0.694109 | 1_3:+42243494 | None:intergenic |
| AATGTCTGAAACATCTCTTG+GGG | 0.696343 | 1_3:+42242392 | None:intergenic |
| ATTGAACCAGAAATGGGACA+AGG | 0.722798 | 1_3:-42243332 | Msa0118960:CDS |
| GACATGGACATATTACCACA+AGG | 0.723394 | 1_3:-42242819 | Msa0118960:CDS |
| ATAGACTCAAATCTTCTGCG+CGG | 0.750289 | 1_3:-42243860 | Msa0118960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAATTTAAAGTACAAT+TGG | - | chr1_3:42242757-42242776 | Msa0118960:CDS | 10.0% |
| !!! | ATTTAATTTAAAGTACAATT+GGG | - | chr1_3:42242758-42242777 | Msa0118960:CDS | 10.0% |
| !!! | TATTTAATTTAAAGTACAAT+TGG | - | chr1_3:42242757-42242776 | Msa0118960:CDS | 10.0% |
| !!! | ATTTAATTTAAAGTACAATT+GGG | - | chr1_3:42242758-42242777 | Msa0118960:CDS | 10.0% |
| !! | AGAAATGAGATTAAAAAAAA+TGG | + | chr1_3:42242533-42242552 | None:intergenic | 15.0% |
| !! | GATGTTAAAATAATATATAG+CGG | - | chr1_3:42243978-42243997 | Msa0118960:intron | 15.0% |
| !! | TGAAAAAAATACTGAAAATA+TGG | + | chr1_3:42244198-42244217 | None:intergenic | 15.0% |
| !!! | TTAGATTATTAGTCTAAAAT+TGG | - | chr1_3:42244232-42244251 | Msa0118960:intron | 15.0% |
| !!! | TAGATTATTAGTCTAAAATT+GGG | - | chr1_3:42244233-42244252 | Msa0118960:intron | 15.0% |
| !! | AGAAATGAGATTAAAAAAAA+TGG | + | chr1_3:42242533-42242552 | None:intergenic | 15.0% |
| !! | GATGTTAAAATAATATATAG+CGG | - | chr1_3:42243978-42243997 | Msa0118960:intron | 15.0% |
| !! | TGAAAAAAATACTGAAAATA+TGG | + | chr1_3:42244198-42244217 | None:intergenic | 15.0% |
| !!! | TTAGATTATTAGTCTAAAAT+TGG | - | chr1_3:42244232-42244251 | Msa0118960:intron | 15.0% |
| !!! | TAGATTATTAGTCTAAAATT+GGG | - | chr1_3:42244233-42244252 | Msa0118960:intron | 15.0% |
| !! | AAGAAAGAAAGAAAGAAATT+GGG | + | chr1_3:42242463-42242482 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAGAAAGAAAT+TGG | + | chr1_3:42242464-42242483 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTAATTTCTGTTT+AGG | - | chr1_3:42242830-42242849 | Msa0118960:CDS | 20.0% |
| !!! | TGATTCATATTTTGAATGAT+CGG | - | chr1_3:42243702-42243721 | Msa0118960:intron | 20.0% |
| !! | CAAAAAATTACACAATGTTA+TGG | + | chr1_3:42243951-42243970 | None:intergenic | 20.0% |
| !!! | ATATTATTTTAACATCCAAC+TGG | + | chr1_3:42243974-42243993 | None:intergenic | 20.0% |
| !! | AAAAATACTGAAAATATGGT+TGG | + | chr1_3:42244194-42244213 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAGAAAGAAATT+GGG | + | chr1_3:42242463-42242482 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAGAAAGAAAT+TGG | + | chr1_3:42242464-42242483 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTAATTTCTGTTT+AGG | - | chr1_3:42242830-42242849 | Msa0118960:CDS | 20.0% |
| !!! | TGATTCATATTTTGAATGAT+CGG | - | chr1_3:42243702-42243721 | Msa0118960:intron | 20.0% |
| !! | CAAAAAATTACACAATGTTA+TGG | + | chr1_3:42243951-42243970 | None:intergenic | 20.0% |
| !!! | ATATTATTTTAACATCCAAC+TGG | + | chr1_3:42243974-42243993 | None:intergenic | 20.0% |
| !! | AAAAATACTGAAAATATGGT+TGG | + | chr1_3:42244194-42244213 | None:intergenic | 20.0% |
| ! | AAAGGGAAATGAAAAATTAC+CGG | + | chr1_3:42242428-42242447 | None:intergenic | 25.0% |
| !! | TTATCGAGAAATGGAAATTT+TGG | + | chr1_3:42242509-42242528 | None:intergenic | 25.0% |
| ! | AAAAATGGTTTATCGAGAAA+TGG | + | chr1_3:42242518-42242537 | None:intergenic | 25.0% |
| !!! | GTGAATTTTAGTGACTAAAT+TGG | + | chr1_3:42242720-42242739 | None:intergenic | 25.0% |
| ! | TTTGTTGAATTTCTAATCAC+AGG | - | chr1_3:42242918-42242937 | Msa0118960:intron | 25.0% |
| ! | CGAGAAAAACATAATACTAA+TGG | + | chr1_3:42243059-42243078 | None:intergenic | 25.0% |
| ! | GAAATCATTTCTGAGTAAAA+TGG | + | chr1_3:42243860-42243879 | None:intergenic | 25.0% |
| ! | GTTAAAATAATATATAGCGG+AGG | - | chr1_3:42243981-42244000 | Msa0118960:intron | 25.0% |
| !!! | CTCAAACTTTTTAAGCAAAT+AGG | + | chr1_3:42244057-42244076 | None:intergenic | 25.0% |
| ! | AAAGGGAAATGAAAAATTAC+CGG | + | chr1_3:42242428-42242447 | None:intergenic | 25.0% |
| !! | TTATCGAGAAATGGAAATTT+TGG | + | chr1_3:42242509-42242528 | None:intergenic | 25.0% |
| ! | AAAAATGGTTTATCGAGAAA+TGG | + | chr1_3:42242518-42242537 | None:intergenic | 25.0% |
| !!! | GTGAATTTTAGTGACTAAAT+TGG | + | chr1_3:42242720-42242739 | None:intergenic | 25.0% |
| ! | TTTGTTGAATTTCTAATCAC+AGG | - | chr1_3:42242918-42242937 | Msa0118960:intron | 25.0% |
| ! | CGAGAAAAACATAATACTAA+TGG | + | chr1_3:42243059-42243078 | None:intergenic | 25.0% |
| ! | GAAATCATTTCTGAGTAAAA+TGG | + | chr1_3:42243860-42243879 | None:intergenic | 25.0% |
| ! | GTTAAAATAATATATAGCGG+AGG | - | chr1_3:42243981-42244000 | Msa0118960:intron | 25.0% |
| !!! | CTCAAACTTTTTAAGCAAAT+AGG | + | chr1_3:42244057-42244076 | None:intergenic | 25.0% |
| ! | TTAAGGTATTCTTATTCGCT+TGG | - | chr1_3:42242322-42242341 | Msa0118960:CDS | 30.0% |
| ACTAAATTGGCGAGATTAAA+TGG | + | chr1_3:42242707-42242726 | None:intergenic | 30.0% | |
| AAGTACAATTGGGACTAAAT+TGG | - | chr1_3:42242768-42242787 | Msa0118960:CDS | 30.0% | |
| ATTTCTGTTTAGGAAGAGAA+AGG | - | chr1_3:42242840-42242859 | Msa0118960:CDS | 30.0% | |
| TTTCTGTTTAGGAAGAGAAA+GGG | - | chr1_3:42242841-42242860 | Msa0118960:CDS | 30.0% | |
| ! | TCACACAATGGTATATTTTG+TGG | - | chr1_3:42243013-42243032 | Msa0118960:intron | 30.0% |
| ! | GTTATATCTGGAGTTATCAT+AGG | + | chr1_3:42243406-42243425 | None:intergenic | 30.0% |
| GATTACTTATGGAAAATCGA+TGG | - | chr1_3:42243447-42243466 | Msa0118960:CDS | 30.0% | |
| TTCAAGAATTGAACCAGAAA+TGG | - | chr1_3:42243488-42243507 | Msa0118960:CDS | 30.0% | |
| TCAAGAATTGAACCAGAAAT+GGG | - | chr1_3:42243489-42243508 | Msa0118960:CDS | 30.0% | |
| ! | TTATTGTTTTCTGTGAACCA+TGG | - | chr1_3:42243600-42243619 | Msa0118960:intron | 30.0% |
| !!! | TTGTGTAATTTTTTGCCAGT+TGG | - | chr1_3:42243956-42243975 | Msa0118960:intron | 30.0% |
| ! | CTTAAAAAGTTTGAGACTGA+GGG | - | chr1_3:42244062-42244081 | Msa0118960:intron | 30.0% |
| ! | AGGGTTATCTTTTGCATTTT+CGG | + | chr1_3:42244336-42244355 | None:intergenic | 30.0% |
| TTTGTCTGTTAAGTGAAAAG+TGG | - | chr1_3:42244510-42244529 | Msa0118960:five_prime_UTR | 30.0% | |
| ! | TTAAGGTATTCTTATTCGCT+TGG | - | chr1_3:42242322-42242341 | Msa0118960:CDS | 30.0% |
| ACTAAATTGGCGAGATTAAA+TGG | + | chr1_3:42242707-42242726 | None:intergenic | 30.0% | |
| AAGTACAATTGGGACTAAAT+TGG | - | chr1_3:42242768-42242787 | Msa0118960:CDS | 30.0% | |
| ATTTCTGTTTAGGAAGAGAA+AGG | - | chr1_3:42242840-42242859 | Msa0118960:CDS | 30.0% | |
| TTTCTGTTTAGGAAGAGAAA+GGG | - | chr1_3:42242841-42242860 | Msa0118960:CDS | 30.0% | |
| ! | TCACACAATGGTATATTTTG+TGG | - | chr1_3:42243013-42243032 | Msa0118960:intron | 30.0% |
| ! | GTTATATCTGGAGTTATCAT+AGG | + | chr1_3:42243406-42243425 | None:intergenic | 30.0% |
| GATTACTTATGGAAAATCGA+TGG | - | chr1_3:42243447-42243466 | Msa0118960:CDS | 30.0% | |
| TTCAAGAATTGAACCAGAAA+TGG | - | chr1_3:42243488-42243507 | Msa0118960:CDS | 30.0% | |
| TCAAGAATTGAACCAGAAAT+GGG | - | chr1_3:42243489-42243508 | Msa0118960:CDS | 30.0% | |
| ! | TTATTGTTTTCTGTGAACCA+TGG | - | chr1_3:42243600-42243619 | Msa0118960:intron | 30.0% |
| !!! | TTGTGTAATTTTTTGCCAGT+TGG | - | chr1_3:42243956-42243975 | Msa0118960:intron | 30.0% |
| ! | CTTAAAAAGTTTGAGACTGA+GGG | - | chr1_3:42244062-42244081 | Msa0118960:intron | 30.0% |
| ! | AGGGTTATCTTTTGCATTTT+CGG | + | chr1_3:42244336-42244355 | None:intergenic | 30.0% |
| TTTGTCTGTTAAGTGAAAAG+TGG | - | chr1_3:42244510-42244529 | Msa0118960:five_prime_UTR | 30.0% | |
| ACACACATTAGTAGAAGAAG+CGG | - | chr1_3:42242286-42242305 | Msa0118960:CDS | 35.0% | |
| AAAAATTACCGGTAGTGAAG+TGG | + | chr1_3:42242417-42242436 | None:intergenic | 35.0% | |
| TTGGGTAAAGCAAGAAGAAA+GGG | + | chr1_3:42242445-42242464 | None:intergenic | 35.0% | |
| ATTGGGTAAAGCAAGAAGAA+AGG | + | chr1_3:42242446-42242465 | None:intergenic | 35.0% | |
| !! | GGAAATTTTGGTAGCTTGAT+TGG | + | chr1_3:42242497-42242516 | None:intergenic | 35.0% |
| ! | ACTGTGTCGAATTGTTGTTA+AGG | - | chr1_3:42242556-42242575 | Msa0118960:intron | 35.0% |
| TCTAATCACAGGATCAAGTT+AGG | - | chr1_3:42242929-42242948 | Msa0118960:intron | 35.0% | |
| CTAATCACAGGATCAAGTTA+GGG | - | chr1_3:42242930-42242949 | Msa0118960:intron | 35.0% | |
| AAGTTAGGGATTGTACATCA+TGG | - | chr1_3:42242944-42242963 | Msa0118960:intron | 35.0% | |
| CTCAGTTGTTTGTAGAGTAA+AGG | + | chr1_3:42243373-42243392 | None:intergenic | 35.0% | |
| CTTTACTCTACAAACAACTG+AGG | - | chr1_3:42243371-42243390 | Msa0118960:CDS | 35.0% | |
| ACAGACATGATGGTTATATC+TGG | + | chr1_3:42243418-42243437 | None:intergenic | 35.0% | |
| AGATATAACCATCATGTCTG+TGG | - | chr1_3:42243417-42243436 | Msa0118960:CDS | 35.0% | |
| GATATAACCATCATGTCTGT+GGG | - | chr1_3:42243418-42243437 | Msa0118960:CDS | 35.0% | |
| GGTATTCACTGTGATTTGAT+TGG | - | chr1_3:42243577-42243596 | Msa0118960:intron | 35.0% | |
| CAACAATGACTTCAATCAAG+TGG | - | chr1_3:42243677-42243696 | Msa0118960:intron | 35.0% | |
| !!! | AGAGGCTCTTTCTAAGATTT+TGG | - | chr1_3:42243801-42243820 | Msa0118960:intron | 35.0% |
| TGCAAATCATGTGTATACGT+TGG | - | chr1_3:42243881-42243900 | Msa0118960:exon | 35.0% | |
| ! | GCTTAAAAAGTTTGAGACTG+AGG | - | chr1_3:42244061-42244080 | Msa0118960:intron | 35.0% |
| !! | TGCATCTGTTTCTGTTCATT+GGG | - | chr1_3:42244270-42244289 | Msa0118960:intron | 35.0% |
| !!! | AGCCATAGGTCATTTTAACT+TGG | - | chr1_3:42244400-42244419 | Msa0118960:intron | 35.0% |
| !!! | GCCATAGGTCATTTTAACTT+GGG | - | chr1_3:42244401-42244420 | Msa0118960:intron | 35.0% |
| ! | AATGTCTGAAACATCTCTTG+GGG | + | chr1_3:42244438-42244457 | None:intergenic | 35.0% |
| ! | CAATGTCTGAAACATCTCTT+GGG | + | chr1_3:42244439-42244458 | None:intergenic | 35.0% |
| GCTGTTTATTGCTGCTATAA+AGG | - | chr1_3:42244559-42244578 | Msa0118960:five_prime_UTR | 35.0% | |
| ACACACATTAGTAGAAGAAG+CGG | - | chr1_3:42242286-42242305 | Msa0118960:CDS | 35.0% | |
| AAAAATTACCGGTAGTGAAG+TGG | + | chr1_3:42242417-42242436 | None:intergenic | 35.0% | |
| TTGGGTAAAGCAAGAAGAAA+GGG | + | chr1_3:42242445-42242464 | None:intergenic | 35.0% | |
| ATTGGGTAAAGCAAGAAGAA+AGG | + | chr1_3:42242446-42242465 | None:intergenic | 35.0% | |
| !! | GGAAATTTTGGTAGCTTGAT+TGG | + | chr1_3:42242497-42242516 | None:intergenic | 35.0% |
| ! | ACTGTGTCGAATTGTTGTTA+AGG | - | chr1_3:42242556-42242575 | Msa0118960:intron | 35.0% |
| TCTAATCACAGGATCAAGTT+AGG | - | chr1_3:42242929-42242948 | Msa0118960:intron | 35.0% | |
| CTAATCACAGGATCAAGTTA+GGG | - | chr1_3:42242930-42242949 | Msa0118960:intron | 35.0% | |
| AAGTTAGGGATTGTACATCA+TGG | - | chr1_3:42242944-42242963 | Msa0118960:intron | 35.0% | |
| CTCAGTTGTTTGTAGAGTAA+AGG | + | chr1_3:42243373-42243392 | None:intergenic | 35.0% | |
| CTTTACTCTACAAACAACTG+AGG | - | chr1_3:42243371-42243390 | Msa0118960:CDS | 35.0% | |
| ACAGACATGATGGTTATATC+TGG | + | chr1_3:42243418-42243437 | None:intergenic | 35.0% | |
| AGATATAACCATCATGTCTG+TGG | - | chr1_3:42243417-42243436 | Msa0118960:CDS | 35.0% | |
| GATATAACCATCATGTCTGT+GGG | - | chr1_3:42243418-42243437 | Msa0118960:CDS | 35.0% | |
| GGTATTCACTGTGATTTGAT+TGG | - | chr1_3:42243577-42243596 | Msa0118960:intron | 35.0% | |
| CAACAATGACTTCAATCAAG+TGG | - | chr1_3:42243677-42243696 | Msa0118960:intron | 35.0% | |
| !!! | AGAGGCTCTTTCTAAGATTT+TGG | - | chr1_3:42243801-42243820 | Msa0118960:intron | 35.0% |
| TGCAAATCATGTGTATACGT+TGG | - | chr1_3:42243881-42243900 | Msa0118960:exon | 35.0% | |
| ! | GCTTAAAAAGTTTGAGACTG+AGG | - | chr1_3:42244061-42244080 | Msa0118960:intron | 35.0% |
| !! | TGCATCTGTTTCTGTTCATT+GGG | - | chr1_3:42244270-42244289 | Msa0118960:intron | 35.0% |
| !!! | AGCCATAGGTCATTTTAACT+TGG | - | chr1_3:42244400-42244419 | Msa0118960:intron | 35.0% |
| !!! | GCCATAGGTCATTTTAACTT+GGG | - | chr1_3:42244401-42244420 | Msa0118960:intron | 35.0% |
| ! | AATGTCTGAAACATCTCTTG+GGG | + | chr1_3:42244438-42244457 | None:intergenic | 35.0% |
| ! | CAATGTCTGAAACATCTCTT+GGG | + | chr1_3:42244439-42244458 | None:intergenic | 35.0% |
| GCTGTTTATTGCTGCTATAA+AGG | - | chr1_3:42244559-42244578 | Msa0118960:five_prime_UTR | 35.0% | |
| TCATCAATCAACCTTCACCT+TGG | + | chr1_3:42242263-42242282 | None:intergenic | 40.0% | |
| TTAGTAGAAGAAGCGGCAAT+AGG | - | chr1_3:42242293-42242312 | Msa0118960:CDS | 40.0% | |
| AAGGAATGGGAGAAGAAGAA+GGG | + | chr1_3:42242389-42242408 | None:intergenic | 40.0% | |
| ATAGACTCAAATCTTCTGCG+CGG | - | chr1_3:42242967-42242986 | Msa0118960:intron | 40.0% | |
| TACCATTGTGTGATCGAGAT+CGG | + | chr1_3:42243006-42243025 | None:intergenic | 40.0% | |
| TACGAAGTTCAGTGTTACAG+TGG | - | chr1_3:42243194-42243213 | Msa0118960:intron | 40.0% | |
| TAGTGAACCTGTGATTTGAG+TGG | - | chr1_3:42243221-42243240 | Msa0118960:intron | 40.0% | |
| ATACCAACCACTCAAATCAC+AGG | + | chr1_3:42243231-42243250 | None:intergenic | 40.0% | |
| ! | GTTGGTATGTTTCTGATTGC+AGG | - | chr1_3:42243243-42243262 | Msa0118960:intron | 40.0% |
| !! | CAGAGAATAGTTCGCTTTTG+AGG | - | chr1_3:42243281-42243300 | Msa0118960:intron | 40.0% |
| !!! | TTTTGAGGTTCAATGCCCTT+TGG | - | chr1_3:42243296-42243315 | Msa0118960:CDS | 40.0% |
| ! | TTTGAGGTTCAATGCCCTTT+GGG | - | chr1_3:42243297-42243316 | Msa0118960:CDS | 40.0% |
| GTGGGAACTGAGATTACTTA+TGG | - | chr1_3:42243436-42243455 | Msa0118960:CDS | 40.0% | |
| ATTGAACCAGAAATGGGACA+AGG | - | chr1_3:42243495-42243514 | Msa0118960:CDS | 40.0% | |
| ! | ATACCTACTCAAAGTACCTG+AGG | + | chr1_3:42243562-42243581 | None:intergenic | 40.0% |
| ! | TTTTCTGTGAACCATGGATC+AGG | - | chr1_3:42243606-42243625 | Msa0118960:intron | 40.0% |
| ! | TTTTGAATGATCGGTACTGC+AGG | - | chr1_3:42243711-42243730 | Msa0118960:intron | 40.0% |
| !!! | TCTAAGATTTTGGAACAGCG+TGG | - | chr1_3:42243811-42243830 | Msa0118960:intron | 40.0% |
| !!! | CTAAGATTTTGGAACAGCGT+GGG | - | chr1_3:42243812-42243831 | Msa0118960:intron | 40.0% |
| !!! | TAAGATTTTGGAACAGCGTG+GGG | - | chr1_3:42243813-42243832 | Msa0118960:intron | 40.0% |
| GACATGGACATATTACCACA+AGG | - | chr1_3:42244008-42244027 | Msa0118960:intron | 40.0% | |
| ! | CCACAAACTAGAGTATTACC+AGG | + | chr1_3:42244095-42244114 | None:intergenic | 40.0% |
| ! | CCTGGTAATACTCTAGTTTG+TGG | - | chr1_3:42244092-42244111 | Msa0118960:intron | 40.0% |
| TTCAGCATTCCAGGAGTTTA+TGG | - | chr1_3:42244140-42244159 | Msa0118960:intron | 40.0% | |
| !! | CTGCATCTGTTTCTGTTCAT+TGG | - | chr1_3:42244269-42244288 | Msa0118960:intron | 40.0% |
| !! | TCTGTTTCTGTTCATTGGGT+AGG | - | chr1_3:42244274-42244293 | Msa0118960:intron | 40.0% |
| ! | TCTGGGATTATACAAGCCAT+AGG | - | chr1_3:42244386-42244405 | Msa0118960:intron | 40.0% |
| GCCCAAGTTAAAATGACCTA+TGG | + | chr1_3:42244405-42244424 | None:intergenic | 40.0% | |
| ! | CCAATGTCTGAAACATCTCT+TGG | + | chr1_3:42244440-42244459 | None:intergenic | 40.0% |
| CCAAGAGATGTTTCAGACAT+TGG | - | chr1_3:42244437-42244456 | Msa0118960:five_prime_UTR | 40.0% | |
| TCATCAATCAACCTTCACCT+TGG | + | chr1_3:42242263-42242282 | None:intergenic | 40.0% | |
| TTAGTAGAAGAAGCGGCAAT+AGG | - | chr1_3:42242293-42242312 | Msa0118960:CDS | 40.0% | |
| AAGGAATGGGAGAAGAAGAA+GGG | + | chr1_3:42242389-42242408 | None:intergenic | 40.0% | |
| ATAGACTCAAATCTTCTGCG+CGG | - | chr1_3:42242967-42242986 | Msa0118960:intron | 40.0% | |
| TACCATTGTGTGATCGAGAT+CGG | + | chr1_3:42243006-42243025 | None:intergenic | 40.0% | |
| TACGAAGTTCAGTGTTACAG+TGG | - | chr1_3:42243194-42243213 | Msa0118960:intron | 40.0% | |
| TAGTGAACCTGTGATTTGAG+TGG | - | chr1_3:42243221-42243240 | Msa0118960:intron | 40.0% | |
| ATACCAACCACTCAAATCAC+AGG | + | chr1_3:42243231-42243250 | None:intergenic | 40.0% | |
| ! | GTTGGTATGTTTCTGATTGC+AGG | - | chr1_3:42243243-42243262 | Msa0118960:intron | 40.0% |
| !! | CAGAGAATAGTTCGCTTTTG+AGG | - | chr1_3:42243281-42243300 | Msa0118960:intron | 40.0% |
| !!! | TTTTGAGGTTCAATGCCCTT+TGG | - | chr1_3:42243296-42243315 | Msa0118960:CDS | 40.0% |
| ! | TTTGAGGTTCAATGCCCTTT+GGG | - | chr1_3:42243297-42243316 | Msa0118960:CDS | 40.0% |
| GTGGGAACTGAGATTACTTA+TGG | - | chr1_3:42243436-42243455 | Msa0118960:CDS | 40.0% | |
| ATTGAACCAGAAATGGGACA+AGG | - | chr1_3:42243495-42243514 | Msa0118960:CDS | 40.0% | |
| ! | ATACCTACTCAAAGTACCTG+AGG | + | chr1_3:42243562-42243581 | None:intergenic | 40.0% |
| ! | TTTTCTGTGAACCATGGATC+AGG | - | chr1_3:42243606-42243625 | Msa0118960:intron | 40.0% |
| ! | TTTTGAATGATCGGTACTGC+AGG | - | chr1_3:42243711-42243730 | Msa0118960:intron | 40.0% |
| !!! | TCTAAGATTTTGGAACAGCG+TGG | - | chr1_3:42243811-42243830 | Msa0118960:intron | 40.0% |
| !!! | CTAAGATTTTGGAACAGCGT+GGG | - | chr1_3:42243812-42243831 | Msa0118960:intron | 40.0% |
| !!! | TAAGATTTTGGAACAGCGTG+GGG | - | chr1_3:42243813-42243832 | Msa0118960:intron | 40.0% |
| GACATGGACATATTACCACA+AGG | - | chr1_3:42244008-42244027 | Msa0118960:intron | 40.0% | |
| ! | CCACAAACTAGAGTATTACC+AGG | + | chr1_3:42244095-42244114 | None:intergenic | 40.0% |
| ! | CCTGGTAATACTCTAGTTTG+TGG | - | chr1_3:42244092-42244111 | Msa0118960:intron | 40.0% |
| TTCAGCATTCCAGGAGTTTA+TGG | - | chr1_3:42244140-42244159 | Msa0118960:intron | 40.0% | |
| !! | CTGCATCTGTTTCTGTTCAT+TGG | - | chr1_3:42244269-42244288 | Msa0118960:intron | 40.0% |
| !! | TCTGTTTCTGTTCATTGGGT+AGG | - | chr1_3:42244274-42244293 | Msa0118960:intron | 40.0% |
| ! | TCTGGGATTATACAAGCCAT+AGG | - | chr1_3:42244386-42244405 | Msa0118960:intron | 40.0% |
| GCCCAAGTTAAAATGACCTA+TGG | + | chr1_3:42244405-42244424 | None:intergenic | 40.0% | |
| ! | CCAATGTCTGAAACATCTCT+TGG | + | chr1_3:42244440-42244459 | None:intergenic | 40.0% |
| CCAAGAGATGTTTCAGACAT+TGG | - | chr1_3:42244437-42244456 | Msa0118960:five_prime_UTR | 40.0% | |
| GCGGCAATAGGATCGAATTA+AGG | - | chr1_3:42242305-42242324 | Msa0118960:CDS | 45.0% | |
| GAAGGAATGGGAGAAGAAGA+AGG | + | chr1_3:42242390-42242409 | None:intergenic | 45.0% | |
| TGAAGTGGAAGGGAAGGAAT+GGG | + | chr1_3:42242402-42242421 | None:intergenic | 45.0% | |
| TTACCGGTAGTGAAGTGGAA+GGG | + | chr1_3:42242412-42242431 | None:intergenic | 45.0% | |
| ATTACCGGTAGTGAAGTGGA+AGG | + | chr1_3:42242413-42242432 | None:intergenic | 45.0% | |
| TTCCGATCTCGATCACACAA+TGG | - | chr1_3:42243001-42243020 | Msa0118960:intron | 45.0% | |
| GTGTCAGTGTCAATGCTTCA+TGG | + | chr1_3:42243113-42243132 | None:intergenic | 45.0% | |
| ACGTTGTCACCAACATGTGT+CGG | - | chr1_3:42243152-42243171 | Msa0118960:intron | 45.0% | |
| GAACCTGTGATTTGAGTGGT+TGG | - | chr1_3:42243225-42243244 | Msa0118960:intron | 45.0% | |
| CAAAGAATCGTGGCGATATG+AGG | + | chr1_3:42243326-42243345 | None:intergenic | 45.0% | |
| ATATCGCCACGATTCTTTGC+TGG | - | chr1_3:42243327-42243346 | Msa0118960:CDS | 45.0% | |
| AGAACACCAGCAAAGAATCG+TGG | + | chr1_3:42243336-42243355 | None:intergenic | 45.0% | |
| TCTTTGCTGGTGTTCTCAAC+TGG | - | chr1_3:42243340-42243359 | Msa0118960:CDS | 45.0% | |
| AAATCGATGGTTCCCGATGA+TGG | - | chr1_3:42243460-42243479 | Msa0118960:CDS | 45.0% | |
| AATCGATGGTTCCCGATGAT+GGG | - | chr1_3:42243461-42243480 | Msa0118960:CDS | 45.0% | |
| TTCTTGAACCCACCCATCAT+CGG | + | chr1_3:42243476-42243495 | None:intergenic | 45.0% | |
| CAATGTCCTTGTCCCATTTC+TGG | + | chr1_3:42243504-42243523 | None:intergenic | 45.0% | |
| GGACAAGGACATTGTCATTG+AGG | - | chr1_3:42243510-42243529 | Msa0118960:CDS | 45.0% | |
| GTTTCCTGAACTTAAGCCTC+AGG | - | chr1_3:42243543-42243562 | Msa0118960:CDS | 45.0% | |
| AGTACCTGAGGCTTAAGTTC+AGG | + | chr1_3:42243550-42243569 | None:intergenic | 45.0% | |
| AAGCCTCAGGTACTTTGAGT+AGG | - | chr1_3:42243556-42243575 | Msa0118960:CDS | 45.0% | |
| TGCAGGCAGAAACAGAACAA+CGG | - | chr1_3:42243728-42243747 | Msa0118960:intron | 45.0% | |
| CAATGCTAAGCAAGTGACAG+AGG | - | chr1_3:42243783-42243802 | Msa0118960:intron | 45.0% | |
| ! | ATATAGCGGAGGAGTTGACA+TGG | - | chr1_3:42243992-42244011 | Msa0118960:intron | 45.0% |
| GACATATTACCACAAGGTGC+TGG | - | chr1_3:42244014-42244033 | Msa0118960:intron | 45.0% | |
| ! | ACTCTAGTTTGTGGTGACTC+CGG | - | chr1_3:42244101-42244120 | Msa0118960:intron | 45.0% |
| GAATAGCTCGGCATCATTTC+CGG | + | chr1_3:42244123-42244142 | None:intergenic | 45.0% | |
| TCCTGGAATGCTGAATAGCT+CGG | + | chr1_3:42244135-42244154 | None:intergenic | 45.0% | |
| ! | TCCAGGAGTTTATGGTGTCA+TGG | - | chr1_3:42244148-42244167 | Msa0118960:intron | 45.0% |
| ACCATGACACCATAAACTCC+TGG | + | chr1_3:42244152-42244171 | None:intergenic | 45.0% | |
| !! | GGAGTTTATGGTGTCATGGT+TGG | - | chr1_3:42244152-42244171 | Msa0118960:intron | 45.0% |
| CCACTGCAGTAATTCCTCTT+GGG | + | chr1_3:42244309-42244328 | None:intergenic | 45.0% | |
| CTGAGGCATGCAGAATCTTA+GGG | + | chr1_3:42244355-42244374 | None:intergenic | 45.0% | |
| ! | TCTGAGGCATGCAGAATCTT+AGG | + | chr1_3:42244356-42244375 | None:intergenic | 45.0% |
| ACGTGCAGAAGTTGAGAACT+CGG | - | chr1_3:42244535-42244554 | Msa0118960:five_prime_UTR | 45.0% | |
| GCGGCAATAGGATCGAATTA+AGG | - | chr1_3:42242305-42242324 | Msa0118960:CDS | 45.0% | |
| GAAGGAATGGGAGAAGAAGA+AGG | + | chr1_3:42242390-42242409 | None:intergenic | 45.0% | |
| TGAAGTGGAAGGGAAGGAAT+GGG | + | chr1_3:42242402-42242421 | None:intergenic | 45.0% | |
| TTACCGGTAGTGAAGTGGAA+GGG | + | chr1_3:42242412-42242431 | None:intergenic | 45.0% | |
| ATTACCGGTAGTGAAGTGGA+AGG | + | chr1_3:42242413-42242432 | None:intergenic | 45.0% | |
| TTCCGATCTCGATCACACAA+TGG | - | chr1_3:42243001-42243020 | Msa0118960:intron | 45.0% | |
| GTGTCAGTGTCAATGCTTCA+TGG | + | chr1_3:42243113-42243132 | None:intergenic | 45.0% | |
| ACGTTGTCACCAACATGTGT+CGG | - | chr1_3:42243152-42243171 | Msa0118960:intron | 45.0% | |
| GAACCTGTGATTTGAGTGGT+TGG | - | chr1_3:42243225-42243244 | Msa0118960:intron | 45.0% | |
| CAAAGAATCGTGGCGATATG+AGG | + | chr1_3:42243326-42243345 | None:intergenic | 45.0% | |
| ATATCGCCACGATTCTTTGC+TGG | - | chr1_3:42243327-42243346 | Msa0118960:CDS | 45.0% | |
| AGAACACCAGCAAAGAATCG+TGG | + | chr1_3:42243336-42243355 | None:intergenic | 45.0% | |
| TCTTTGCTGGTGTTCTCAAC+TGG | - | chr1_3:42243340-42243359 | Msa0118960:CDS | 45.0% | |
| AAATCGATGGTTCCCGATGA+TGG | - | chr1_3:42243460-42243479 | Msa0118960:CDS | 45.0% | |
| AATCGATGGTTCCCGATGAT+GGG | - | chr1_3:42243461-42243480 | Msa0118960:CDS | 45.0% | |
| TTCTTGAACCCACCCATCAT+CGG | + | chr1_3:42243476-42243495 | None:intergenic | 45.0% | |
| CAATGTCCTTGTCCCATTTC+TGG | + | chr1_3:42243504-42243523 | None:intergenic | 45.0% | |
| GGACAAGGACATTGTCATTG+AGG | - | chr1_3:42243510-42243529 | Msa0118960:CDS | 45.0% | |
| GTTTCCTGAACTTAAGCCTC+AGG | - | chr1_3:42243543-42243562 | Msa0118960:CDS | 45.0% | |
| AGTACCTGAGGCTTAAGTTC+AGG | + | chr1_3:42243550-42243569 | None:intergenic | 45.0% | |
| AAGCCTCAGGTACTTTGAGT+AGG | - | chr1_3:42243556-42243575 | Msa0118960:CDS | 45.0% | |
| TGCAGGCAGAAACAGAACAA+CGG | - | chr1_3:42243728-42243747 | Msa0118960:intron | 45.0% | |
| CAATGCTAAGCAAGTGACAG+AGG | - | chr1_3:42243783-42243802 | Msa0118960:intron | 45.0% | |
| ! | ATATAGCGGAGGAGTTGACA+TGG | - | chr1_3:42243992-42244011 | Msa0118960:intron | 45.0% |
| GACATATTACCACAAGGTGC+TGG | - | chr1_3:42244014-42244033 | Msa0118960:intron | 45.0% | |
| ! | ACTCTAGTTTGTGGTGACTC+CGG | - | chr1_3:42244101-42244120 | Msa0118960:intron | 45.0% |
| GAATAGCTCGGCATCATTTC+CGG | + | chr1_3:42244123-42244142 | None:intergenic | 45.0% | |
| TCCTGGAATGCTGAATAGCT+CGG | + | chr1_3:42244135-42244154 | None:intergenic | 45.0% | |
| ! | TCCAGGAGTTTATGGTGTCA+TGG | - | chr1_3:42244148-42244167 | Msa0118960:intron | 45.0% |
| ACCATGACACCATAAACTCC+TGG | + | chr1_3:42244152-42244171 | None:intergenic | 45.0% | |
| !! | GGAGTTTATGGTGTCATGGT+TGG | - | chr1_3:42244152-42244171 | Msa0118960:intron | 45.0% |
| CCACTGCAGTAATTCCTCTT+GGG | + | chr1_3:42244309-42244328 | None:intergenic | 45.0% | |
| CTGAGGCATGCAGAATCTTA+GGG | + | chr1_3:42244355-42244374 | None:intergenic | 45.0% | |
| ! | TCTGAGGCATGCAGAATCTT+AGG | + | chr1_3:42244356-42244375 | None:intergenic | 45.0% |
| ACGTGCAGAAGTTGAGAACT+CGG | - | chr1_3:42244535-42244554 | Msa0118960:five_prime_UTR | 45.0% | |
| AGAAGAAGAAGGGTGGTGAG+TGG | + | chr1_3:42242379-42242398 | None:intergenic | 50.0% | |
| GAATGGGAGAAGAAGAAGGG+TGG | + | chr1_3:42242386-42242405 | None:intergenic | 50.0% | |
| GTGAAGTGGAAGGGAAGGAA+TGG | + | chr1_3:42242403-42242422 | None:intergenic | 50.0% | |
| CTTCCCTTCCACTTCACTAC+CGG | - | chr1_3:42242406-42242425 | Msa0118960:CDS | 50.0% | |
| TGACAACGTGTCAGTGTGTC+TGG | + | chr1_3:42243141-42243160 | None:intergenic | 50.0% | |
| GCGTGATATCCGACACATGT+TGG | + | chr1_3:42243164-42243183 | None:intergenic | 50.0% | |
| GCGAACTATTCTCTGCGTCA+TGG | + | chr1_3:42243276-42243295 | None:intergenic | 50.0% | |
| GCGATATGAGGCTTCCCAAA+GGG | + | chr1_3:42243314-42243333 | None:intergenic | 50.0% | |
| CTCAGTTCCCACAGACATGA+TGG | + | chr1_3:42243428-42243447 | None:intergenic | 50.0% | |
| TCTTGAACCCACCCATCATC+GGG | + | chr1_3:42243475-42243494 | None:intergenic | 50.0% | |
| GCAGGCAGAAACAGAACAAC+GGG | - | chr1_3:42243729-42243748 | Msa0118960:intron | 50.0% | |
| !! | TTACCACAAGGTGCTGGCAA+AGG | - | chr1_3:42244020-42244039 | Msa0118960:intron | 50.0% |
| CCCAAGAGGAATTACTGCAG+TGG | - | chr1_3:42244306-42244325 | Msa0118960:intron | 50.0% | |
| GCCACTGCAGTAATTCCTCT+TGG | + | chr1_3:42244310-42244329 | None:intergenic | 50.0% | |
| CATCTCTTGGGGACAGGTTT+GGG | + | chr1_3:42244427-42244446 | None:intergenic | 50.0% | |
| ACATCTCTTGGGGACAGGTT+TGG | + | chr1_3:42244428-42244447 | None:intergenic | 50.0% | |
| CTGAAACATCTCTTGGGGAC+AGG | + | chr1_3:42244433-42244452 | None:intergenic | 50.0% | |
| AGAAGAAGAAGGGTGGTGAG+TGG | + | chr1_3:42242379-42242398 | None:intergenic | 50.0% | |
| GAATGGGAGAAGAAGAAGGG+TGG | + | chr1_3:42242386-42242405 | None:intergenic | 50.0% | |
| GTGAAGTGGAAGGGAAGGAA+TGG | + | chr1_3:42242403-42242422 | None:intergenic | 50.0% | |
| CTTCCCTTCCACTTCACTAC+CGG | - | chr1_3:42242406-42242425 | Msa0118960:CDS | 50.0% | |
| TGACAACGTGTCAGTGTGTC+TGG | + | chr1_3:42243141-42243160 | None:intergenic | 50.0% | |
| GCGTGATATCCGACACATGT+TGG | + | chr1_3:42243164-42243183 | None:intergenic | 50.0% | |
| GCGAACTATTCTCTGCGTCA+TGG | + | chr1_3:42243276-42243295 | None:intergenic | 50.0% | |
| GCGATATGAGGCTTCCCAAA+GGG | + | chr1_3:42243314-42243333 | None:intergenic | 50.0% | |
| CTCAGTTCCCACAGACATGA+TGG | + | chr1_3:42243428-42243447 | None:intergenic | 50.0% | |
| TCTTGAACCCACCCATCATC+GGG | + | chr1_3:42243475-42243494 | None:intergenic | 50.0% | |
| GCAGGCAGAAACAGAACAAC+GGG | - | chr1_3:42243729-42243748 | Msa0118960:intron | 50.0% | |
| !! | TTACCACAAGGTGCTGGCAA+AGG | - | chr1_3:42244020-42244039 | Msa0118960:intron | 50.0% |
| CCCAAGAGGAATTACTGCAG+TGG | - | chr1_3:42244306-42244325 | Msa0118960:intron | 50.0% | |
| GCCACTGCAGTAATTCCTCT+TGG | + | chr1_3:42244310-42244329 | None:intergenic | 50.0% | |
| CATCTCTTGGGGACAGGTTT+GGG | + | chr1_3:42244427-42244446 | None:intergenic | 50.0% | |
| ACATCTCTTGGGGACAGGTT+TGG | + | chr1_3:42244428-42244447 | None:intergenic | 50.0% | |
| CTGAAACATCTCTTGGGGAC+AGG | + | chr1_3:42244433-42244452 | None:intergenic | 50.0% | |
| AAGAAGGGTGGTGAGTGGTG+AGG | + | chr1_3:42242374-42242393 | None:intergenic | 55.0% | |
| CGGTAGTGAAGTGGAAGGGA+AGG | + | chr1_3:42242408-42242427 | None:intergenic | 55.0% | |
| GGCGATATGAGGCTTCCCAA+AGG | + | chr1_3:42243315-42243334 | None:intergenic | 55.0% | |
| TGCTGGTGTTCTCAACTGGC+AGG | - | chr1_3:42243344-42243363 | Msa0118960:CDS | 55.0% | |
| !! | GATGGTTCCCGATGATGGGT+GGG | - | chr1_3:42243465-42243484 | Msa0118960:CDS | 55.0% |
| GCTAGCGAGTTCCTGATCCA+TGG | + | chr1_3:42243620-42243639 | None:intergenic | 55.0% | |
| TGACCTTTGCCAGCACCTTG+TGG | + | chr1_3:42244026-42244045 | None:intergenic | 55.0% | |
| GAGACTGAGGGAAAGCTACC+TGG | - | chr1_3:42244074-42244093 | Msa0118960:intron | 55.0% | |
| GCCGAGCTATTCAGCATTCC+AGG | - | chr1_3:42244131-42244150 | Msa0118960:intron | 55.0% | |
| GTAGGTAAGCAACGCCCAAG+AGG | - | chr1_3:42244292-42244311 | Msa0118960:intron | 55.0% | |
| AAGAAGGGTGGTGAGTGGTG+AGG | + | chr1_3:42242374-42242393 | None:intergenic | 55.0% | |
| CGGTAGTGAAGTGGAAGGGA+AGG | + | chr1_3:42242408-42242427 | None:intergenic | 55.0% | |
| GGCGATATGAGGCTTCCCAA+AGG | + | chr1_3:42243315-42243334 | None:intergenic | 55.0% | |
| TGCTGGTGTTCTCAACTGGC+AGG | - | chr1_3:42243344-42243363 | Msa0118960:CDS | 55.0% | |
| !! | GATGGTTCCCGATGATGGGT+GGG | - | chr1_3:42243465-42243484 | Msa0118960:CDS | 55.0% |
| GCTAGCGAGTTCCTGATCCA+TGG | + | chr1_3:42243620-42243639 | None:intergenic | 55.0% | |
| TGACCTTTGCCAGCACCTTG+TGG | + | chr1_3:42244026-42244045 | None:intergenic | 55.0% | |
| GAGACTGAGGGAAAGCTACC+TGG | - | chr1_3:42244074-42244093 | Msa0118960:intron | 55.0% | |
| GCCGAGCTATTCAGCATTCC+AGG | - | chr1_3:42244131-42244150 | Msa0118960:intron | 55.0% | |
| GTAGGTAAGCAACGCCCAAG+AGG | - | chr1_3:42244292-42244311 | Msa0118960:intron | 55.0% | |
| !! | CGATGGTTCCCGATGATGGG+TGG | - | chr1_3:42243464-42243483 | Msa0118960:CDS | 60.0% |
| !! | CCTCAGAGCGCTGTGCATCT+GGG | - | chr1_3:42244369-42244388 | Msa0118960:intron | 60.0% |
| !! | CGATGGTTCCCGATGATGGG+TGG | - | chr1_3:42243464-42243483 | Msa0118960:CDS | 60.0% |
| !! | CCTCAGAGCGCTGTGCATCT+GGG | - | chr1_3:42244369-42244388 | Msa0118960:intron | 60.0% |
| !! | GCCTCAGAGCGCTGTGCATC+TGG | - | chr1_3:42244368-42244387 | Msa0118960:intron | 65.0% |
| CCCAGATGCACAGCGCTCTG+AGG | + | chr1_3:42244372-42244391 | None:intergenic | 65.0% | |
| !! | GCCTCAGAGCGCTGTGCATC+TGG | - | chr1_3:42244368-42244387 | Msa0118960:intron | 65.0% |
| CCCAGATGCACAGCGCTCTG+AGG | + | chr1_3:42244372-42244391 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42242254 | 42244595 | 42242254 | ID=Msa0118960;Name=Msa0118960 |
| chr1_3 | mRNA | 42242254 | 42244595 | 42242254 | ID=Msa0118960-mRNA-1;Parent=Msa0118960;Name=Msa0118960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=197|1|0.83|1|0.8|0.66|6|0|318 |
| chr1_3 | exon | 42242254 | 42242553 | 42242254 | ID=Msa0118960-mRNA-1:exon:12781;Parent=Msa0118960-mRNA-1 |
| chr1_3 | exon | 42242680 | 42242874 | 42242680 | ID=Msa0118960-mRNA-1:exon:12780;Parent=Msa0118960-mRNA-1 |
| chr1_3 | exon | 42243015 | 42243116 | 42243015 | ID=Msa0118960-mRNA-1:exon:12779;Parent=Msa0118960-mRNA-1 |
| chr1_3 | exon | 42243285 | 42243584 | 42243285 | ID=Msa0118960-mRNA-1:exon:12778;Parent=Msa0118960-mRNA-1 |
| chr1_3 | exon | 42243827 | 42243909 | 42243827 | ID=Msa0118960-mRNA-1:exon:12777;Parent=Msa0118960-mRNA-1 |
| chr1_3 | exon | 42244422 | 42244595 | 42244422 | ID=Msa0118960-mRNA-1:exon:12776;Parent=Msa0118960-mRNA-1 |
| chr1_3 | five_prime_UTR | 42244422 | 42244595 | 42244422 | ID=Msa0118960-mRNA-1:five_prime_utr;Parent=Msa0118960-mRNA-1 |
| chr1_3 | five_prime_UTR | 42243887 | 42243909 | 42243887 | ID=Msa0118960-mRNA-1:five_prime_utr;Parent=Msa0118960-mRNA-1 |
| chr1_3 | CDS | 42243827 | 42243886 | 42243827 | ID=Msa0118960-mRNA-1:cds;Parent=Msa0118960-mRNA-1 |
| chr1_3 | CDS | 42243285 | 42243584 | 42243285 | ID=Msa0118960-mRNA-1:cds;Parent=Msa0118960-mRNA-1 |
| chr1_3 | CDS | 42243015 | 42243116 | 42243015 | ID=Msa0118960-mRNA-1:cds;Parent=Msa0118960-mRNA-1 |
| chr1_3 | CDS | 42242680 | 42242874 | 42242680 | ID=Msa0118960-mRNA-1:cds;Parent=Msa0118960-mRNA-1 |
| chr1_3 | CDS | 42242254 | 42242553 | 42242254 | ID=Msa0118960-mRNA-1:cds;Parent=Msa0118960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
