Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023680 | Msa0071370 | 0.964514 | 2.014695e-123 | -8.615850e-47 |
| Msa0023680 | Msa0162480 | 0.930134 | 2.546589e-93 | -8.615850e-47 |
| Msa0023680 | Msa0419730 | 0.801362 | 9.331543e-49 | -8.615850e-47 |
| Msa0023680 | Msa1166690 | 0.802473 | 5.517508e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023680 | MtrunA17_Chr1g0176961 | 97.344 | 753 | 20 | 0 | 1 | 753 | 1 | 753 | 0.0 | 1513 |
| Msa0023680 | MtrunA17_Chr7g0267631 | 58.739 | 761 | 265 | 17 | 1 | 746 | 1 | 727 | 0.0 | 807 |
| Msa0023680 | MtrunA17_Chr3g0137731 | 50.962 | 312 | 114 | 5 | 419 | 728 | 323 | 597 | 1.68e-93 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023680 | AT3G11760.1 | 58.355 | 754 | 229 | 18 | 1 | 729 | 1 | 694 | 0.0 | 796 |
| Msa0023680 | AT5G04860.1 | 45.896 | 804 | 331 | 21 | 1 | 749 | 1 | 755 | 0.0 | 606 |
| Msa0023680 | AT5G04860.2 | 47.531 | 648 | 261 | 17 | 137 | 749 | 1 | 604 | 1.54e-172 | 510 |
| Msa0023680 | AT2G10560.1 | 47.970 | 271 | 107 | 6 | 493 | 749 | 1 | 251 | 4.41e-76 | 247 |
| Msa0023680 | AT2G25460.2 | 43.396 | 318 | 124 | 4 | 419 | 734 | 282 | 545 | 4.73e-75 | 253 |
| Msa0023680 | AT2G25460.1 | 52.448 | 143 | 62 | 2 | 419 | 560 | 282 | 419 | 2.67e-33 | 133 |
Find 199 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATCAAACTGGGACTTTA+TGG | 0.102736 | 1_1:-45234517 | None:intergenic |
| AAGAATCGGCTTCAACTTTA+AGG | 0.138463 | 1_1:-45234851 | None:intergenic |
| AAGGGCTCTCCTTTAGATTT+AGG | 0.181325 | 1_1:-45233637 | None:intergenic |
| GTTCCTGAAAAGTCCTTTAT+AGG | 0.194840 | 1_1:+45234666 | Msa0023680:CDS |
| ACACATAATCGTACTGATTA+AGG | 0.251417 | 1_1:+45235351 | Msa0023680:exon |
| GTTACTTGTGGAGTCCTTTC+CGG | 0.255066 | 1_1:-45234781 | None:intergenic |
| ACCACAGGAATCTTGTTCTT+TGG | 0.269464 | 1_1:-45232265 | None:intergenic |
| CTTCCCTCATCCATTCCTTC+TGG | 0.274855 | 1_1:-45234699 | None:intergenic |
| TCTGCTTGTAATTCTCTAAT+AGG | 0.276013 | 1_1:-45235194 | None:intergenic |
| ACTTCGAATTTACGGGAAAT+TGG | 0.280810 | 1_1:-45231866 | None:intergenic |
| TCTGATGAATCTATTTCATT+TGG | 0.287396 | 1_1:+45233724 | Msa0023680:CDS |
| CCATGTCTTTCGATAACATT+TGG | 0.288111 | 1_1:+45234742 | Msa0023680:CDS |
| TCATCTGAGCTCAAAACTTT+TGG | 0.290865 | 1_1:+45235547 | Msa0023680:three_prime_UTR |
| CTGATGAATCTATTTCATTT+GGG | 0.291378 | 1_1:+45233725 | Msa0023680:CDS |
| CGAACATCGGTATCTGAGTT+TGG | 0.292405 | 1_1:+45234303 | Msa0023680:CDS |
| GCATTAGGTCGCGGTTGTTT+TGG | 0.300495 | 1_1:-45234494 | None:intergenic |
| TAACATAAAGTTGTATGAAT+TGG | 0.307061 | 1_1:+45235574 | Msa0023680:three_prime_UTR |
| AGCATTCCACTTACAATTCC+TGG | 0.318693 | 1_1:+45232352 | Msa0023680:CDS |
| CCACTATCAAAGCTGGTCTT+AGG | 0.321310 | 1_1:+45233185 | Msa0023680:CDS |
| GAAACAATAGAATCCTCTTT+TGG | 0.324321 | 1_1:-45233535 | None:intergenic |
| CTTTCTCTGACTCTCCTGAT+TGG | 0.326671 | 1_1:-45233153 | None:intergenic |
| TGATCTAGAAACAGTTGTTC+AGG | 0.341468 | 1_1:+45234620 | Msa0023680:CDS |
| ATCGTTCAGCTACGGGAAAC+TGG | 0.345865 | 1_1:+45233408 | Msa0023680:CDS |
| CATAAAGCTGAGGACGATTC+AGG | 0.349125 | 1_1:+45234273 | Msa0023680:CDS |
| GAAGTTTGACTTCGAATTTA+CGG | 0.350744 | 1_1:-45231874 | None:intergenic |
| CTCGAATTAAGCTATCAAAC+TGG | 0.359785 | 1_1:-45234527 | None:intergenic |
| GAACATCGGTATCTGAGTTT+GGG | 0.366778 | 1_1:+45234304 | Msa0023680:CDS |
| TACTGCATCATTGACACTCT+TGG | 0.376702 | 1_1:+45234873 | Msa0023680:CDS |
| GAATCAGAGTGCAAACAAAA+AGG | 0.381089 | 1_1:-45235622 | None:intergenic |
| TGACTCTCCTGATTGGTTCA+AGG | 0.386234 | 1_1:-45233146 | None:intergenic |
| GAAGGGTGATGACGAGGATT+GGG | 0.388790 | 1_1:+45233474 | Msa0023680:CDS |
| CAACTTTAAGGATGAAGAAA+TGG | 0.389682 | 1_1:-45234839 | None:intergenic |
| ACTGGGACTTTATGGGCATT+AGG | 0.391468 | 1_1:-45234509 | None:intergenic |
| CTATCAAACTGGGACTTTAT+GGG | 0.392417 | 1_1:-45234516 | None:intergenic |
| AAGATTCCTGTGGTTGGAAC+AGG | 0.393992 | 1_1:+45232274 | Msa0023680:CDS |
| TACTCTAACTAGTCTTACTA+TGG | 0.394095 | 1_1:+45235386 | Msa0023680:three_prime_UTR |
| TCTAGATCAAAATGTTTGTC+GGG | 0.400167 | 1_1:-45234606 | None:intergenic |
| CTTGAACTTTGCGCTACATA+AGG | 0.400579 | 1_1:-45233568 | None:intergenic |
| TTGTTGCTGTAATTGCTGAT+TGG | 0.402500 | 1_1:+45234469 | Msa0023680:CDS |
| AAGTTTGACTTCGAATTTAC+GGG | 0.405395 | 1_1:-45231873 | None:intergenic |
| TTGAAGTTAAATTTAACAAA+AGG | 0.407650 | 1_1:+45235429 | Msa0023680:three_prime_UTR |
| CATGTCTTTCGATAACATTT+GGG | 0.410509 | 1_1:+45234743 | Msa0023680:CDS |
| TGGATGAAAGAAACCTATAA+AGG | 0.410749 | 1_1:-45234679 | None:intergenic |
| GAAAGAAGGAACCTTAACTA+TGG | 0.412299 | 1_1:-45231741 | None:intergenic |
| TGAAGGGTGATGACGAGGAT+TGG | 0.414690 | 1_1:+45233473 | Msa0023680:CDS |
| CAGCGCAGTGAACGTGCAGC+AGG | 0.419816 | 1_1:+45234426 | Msa0023680:CDS |
| CGTTGGAAGTTTGCCAAAAG+AGG | 0.420162 | 1_1:+45233522 | Msa0023680:CDS |
| CCTAAGACCAGCTTTGATAG+TGG | 0.423378 | 1_1:-45233185 | None:intergenic |
| CAACTTTGCGGTGGGCAGTT+GGG | 0.429654 | 1_1:+45234332 | Msa0023680:CDS |
| TTCTAGATCAAAATGTTTGT+CGG | 0.433819 | 1_1:-45234607 | None:intergenic |
| GCAGATATCAATCAGCTTAG+TGG | 0.435759 | 1_1:+45233060 | Msa0023680:intron |
| CATTCGCCGTTGAAATTCGT+TGG | 0.436958 | 1_1:+45231942 | Msa0023680:CDS |
| TATGTGAAAACCAGACATAT+AGG | 0.438554 | 1_1:+45234574 | Msa0023680:CDS |
| CGAATTTACGGGAAATTGGT+GGG | 0.441264 | 1_1:-45231862 | None:intergenic |
| CAAGACGCAGCTTATTGCCT+TGG | 0.445383 | 1_1:+45233587 | Msa0023680:CDS |
| ATGTGAAAACCAGACATATA+GGG | 0.445666 | 1_1:+45234575 | Msa0023680:CDS |
| TACTGGTGAGGCTCATCCTA+AGG | 0.445670 | 1_1:+45232021 | Msa0023680:CDS |
| TCAAGAGAGTCAGAGTCAAA+AGG | 0.446923 | 1_1:-45233325 | None:intergenic |
| CCCTTGTTGAAGAAGGCATA+TGG | 0.450589 | 1_1:+45233655 | Msa0023680:CDS |
| TTGGAGTCTGGTGCTGAGAC+AGG | 0.452085 | 1_1:+45235077 | Msa0023680:CDS |
| AATGATAAGGAGTTGGAGTC+TGG | 0.455949 | 1_1:+45235065 | Msa0023680:CDS |
| TGGTTCAAGGGTGATGCAAC+AGG | 0.458578 | 1_1:-45233133 | None:intergenic |
| GCATCACCCTTGAACCAATC+AGG | 0.458879 | 1_1:+45233139 | Msa0023680:CDS |
| TTCAGATCTCCTAAATCTAA+AGG | 0.460780 | 1_1:+45233628 | Msa0023680:CDS |
| GACTCTCCTGATTGGTTCAA+GGG | 0.464260 | 1_1:-45233145 | None:intergenic |
| CAAGAGAGTCAGAGTCAAAA+GGG | 0.467406 | 1_1:-45233324 | None:intergenic |
| CTTCCCTCTTCCTCACGGCT+CGG | 0.468647 | 1_1:-45233256 | None:intergenic |
| TGCGGAAATCGTTCAGCTAC+GGG | 0.469599 | 1_1:+45233401 | Msa0023680:CDS |
| AGGATGATTTGAACTGTTGA+TGG | 0.470966 | 1_1:+45235452 | Msa0023680:three_prime_UTR |
| GACGCAGCTTATTGCCTTGG+AGG | 0.472267 | 1_1:+45233590 | Msa0023680:CDS |
| CCATATGCCTTCTTCAACAA+GGG | 0.473088 | 1_1:-45233655 | None:intergenic |
| GAAACCGAGCCGTGAGGAAG+AGG | 0.479734 | 1_1:+45233252 | Msa0023680:CDS |
| ACAACTTTGCGGTGGGCAGT+TGG | 0.479833 | 1_1:+45234331 | Msa0023680:CDS |
| GTCAATGATGCAGTAAGAAT+CGG | 0.484330 | 1_1:-45234865 | None:intergenic |
| TTTCTTTCATCCAGAAGGAA+TGG | 0.487919 | 1_1:+45234689 | Msa0023680:CDS |
| AAGAAGGCATATGGAGAAGA+AGG | 0.488958 | 1_1:+45233664 | Msa0023680:CDS |
| GTTTGGGGACGACAACTTTG+CGG | 0.490682 | 1_1:+45234320 | Msa0023680:CDS |
| TCTGACGATTGAGTGGCATC+TGG | 0.491709 | 1_1:-45234969 | None:intergenic |
| GGAATCGCTCCCTATATGTC+TGG | 0.491997 | 1_1:-45234584 | None:intergenic |
| GGAAGAAGAAGATGATGAGA+AGG | 0.496097 | 1_1:-45231766 | None:intergenic |
| ACCATGGTAACGCGTATTGT+TGG | 0.500204 | 1_1:-45231809 | None:intergenic |
| TTGTATCAACAAGGAAATCA+AGG | 0.502701 | 1_1:+45233230 | Msa0023680:CDS |
| ATGATGAGAAGGAAGAAAGA+AGG | 0.503045 | 1_1:-45231755 | None:intergenic |
| CCTCACTTCCCTCTTCCTCA+CGG | 0.504065 | 1_1:-45233261 | None:intergenic |
| TCGAATTTACGGGAAATTGG+TGG | 0.505563 | 1_1:-45231863 | None:intergenic |
| CTTCTCATCAAAACTCTCTC+CGG | 0.505930 | 1_1:+45231893 | Msa0023680:CDS |
| AACTAAGGTTGTGTCTGTCT+AGG | 0.509674 | 1_1:+45235489 | Msa0023680:three_prime_UTR |
| CTTTCTGCTAATAAAGACAA+TGG | 0.509740 | 1_1:+45232097 | Msa0023680:CDS |
| AAGTTAAATTTAACAAAAGG+AGG | 0.512919 | 1_1:+45235432 | Msa0023680:three_prime_UTR |
| GCCGTTGAAATTCGTTGGAA+AGG | 0.514785 | 1_1:+45231947 | Msa0023680:CDS |
| GCAAATCAATGATAAGGAGT+TGG | 0.514949 | 1_1:+45235058 | Msa0023680:CDS |
| TGCAACGGTTTGTTGTTCAC+CGG | 0.516703 | 1_1:-45235003 | None:intergenic |
| AAACTGGCCTTTGCAAATGC+TGG | 0.517864 | 1_1:+45233424 | Msa0023680:CDS |
| TTCTCATTCAGAAGAGGTAA+AGG | 0.517877 | 1_1:+45233366 | Msa0023680:CDS |
| TTACAAGCAGATGTGAAGAA+AGG | 0.518971 | 1_1:+45235206 | Msa0023680:CDS |
| TTGCTCTTAGTTCGCTTCGT+CGG | 0.521079 | 1_1:+45231978 | Msa0023680:CDS |
| TGCATCTGTTGTTGATCAGA+AGG | 0.522342 | 1_1:+45232318 | Msa0023680:CDS |
| TGATGTAGGGTTTGAATCAG+AGG | 0.524447 | 1_1:+45232242 | Msa0023680:intron |
| GGTTCAGCAAATCAATGATA+AGG | 0.524830 | 1_1:+45235052 | Msa0023680:CDS |
| ATAGGTTTCTTTCATCCAGA+AGG | 0.525209 | 1_1:+45234684 | Msa0023680:CDS |
| AAACCGAGCCGTGAGGAAGA+GGG | 0.527016 | 1_1:+45233253 | Msa0023680:CDS |
| AGATGATGAAATGGCGTCCA+TGG | 0.533719 | 1_1:+45231837 | Msa0023680:CDS |
| TGATGAATCTATTTCATTTG+GGG | 0.533930 | 1_1:+45233726 | Msa0023680:CDS |
| CCGTGAGGAAGAGGGAAGTG+AGG | 0.535601 | 1_1:+45233261 | Msa0023680:CDS |
| AGGAGAGCCCTTGTTGAAGA+AGG | 0.536446 | 1_1:+45233648 | Msa0023680:CDS |
| ACCTTTCCAACGAATTTCAA+CGG | 0.536856 | 1_1:-45231948 | None:intergenic |
| GTCTTGTGATGTTGTTCCTG+TGG | 0.538631 | 1_1:+45235295 | Msa0023680:CDS |
| GTGAGGGAAATTACTCTGGC+AGG | 0.538852 | 1_1:+45233278 | Msa0023680:CDS |
| TTCACTGCGCTGATCAATTG+AGG | 0.539569 | 1_1:-45234415 | None:intergenic |
| TTTGATAGCTTAATTCGAGA+TGG | 0.542877 | 1_1:+45234531 | Msa0023680:CDS |
| CCGAGGTTCATCGTTACTTG+TGG | 0.543988 | 1_1:-45234793 | None:intergenic |
| AAGAACAAGATTCCTGTGGT+TGG | 0.544870 | 1_1:+45232268 | Msa0023680:CDS |
| TCGTCAGACGAAAACACAAC+CGG | 0.545059 | 1_1:+45234984 | Msa0023680:CDS |
| TCCATATGCCTTCTTCAACA+AGG | 0.550604 | 1_1:-45233656 | None:intergenic |
| TTCGAGATGGCTCATTAGAG+TGG | 0.552263 | 1_1:+45234544 | Msa0023680:CDS |
| ACTAAGGTTGTGTCTGTCTA+GGG | 0.554453 | 1_1:+45235490 | Msa0023680:three_prime_UTR |
| GCGCAGTGAACGTGCAGCAG+GGG | 0.555807 | 1_1:+45234428 | Msa0023680:CDS |
| GCATATATCTTGAAATTCGA+TGG | 0.555896 | 1_1:+45234924 | Msa0023680:CDS |
| TGGGATGAGATTAGTAATGC+CGG | 0.556246 | 1_1:+45234762 | Msa0023680:CDS |
| TACTCTGGCAGGAGTGAGGA+TGG | 0.557847 | 1_1:+45233289 | Msa0023680:CDS |
| TGGTTGTTAAGATGATGAAA+TGG | 0.558322 | 1_1:+45231828 | Msa0023680:CDS |
| GTGCGGAAATCGTTCAGCTA+CGG | 0.560018 | 1_1:+45233400 | Msa0023680:CDS |
| TCATCCAGAAGGAATGGATG+AGG | 0.560528 | 1_1:+45234695 | Msa0023680:CDS |
| GGAAGTGAGGGAAATTACTC+TGG | 0.560922 | 1_1:+45233274 | Msa0023680:CDS |
| GCTGAACGATTTCCGCACAC+TGG | 0.561277 | 1_1:-45233395 | None:intergenic |
| ACTTTATGGGCATTAGGTCG+CGG | 0.562038 | 1_1:-45234503 | None:intergenic |
| CTCAACTTTCTCTTCCTCCA+AGG | 0.562179 | 1_1:-45233604 | None:intergenic |
| GCTCAAGAGAATAGTGAGCT+TGG | 0.562928 | 1_1:+45233094 | Msa0023680:CDS |
| AGCGAACTAAGAGCAAGTTT+AGG | 0.563370 | 1_1:-45231971 | None:intergenic |
| GAATTTACGGGAAATTGGTG+GGG | 0.563517 | 1_1:-45231861 | None:intergenic |
| CTGGCCTTTGCAAATGCTGG+TGG | 0.563905 | 1_1:+45233427 | Msa0023680:CDS |
| GAACCACCAGGAATTGTAAG+TGG | 0.564705 | 1_1:-45232358 | None:intergenic |
| ACTGGTGAGGCTCATCCTAA+GGG | 0.565613 | 1_1:+45232022 | Msa0023680:CDS |
| ATTTGTAGTCTATGATGAAG+TGG | 0.567209 | 1_1:-45235245 | None:intergenic |
| AATTTACGGGAAATTGGTGG+GGG | 0.568449 | 1_1:-45231860 | None:intergenic |
| GAAGTTTCATGTGGCCATCA+CGG | 0.569157 | 1_1:-45234374 | None:intergenic |
| TCAACGGCGAATGTATTCTC+CGG | 0.570730 | 1_1:-45231932 | None:intergenic |
| GTGGTTGAGAAAAGAGACAA+AGG | 0.574718 | 1_1:-45231787 | None:intergenic |
| GAGGTTTCCACTATCAAAGC+TGG | 0.575099 | 1_1:+45233178 | Msa0023680:CDS |
| ACAGATGCTTCTTCAGCCAC+AGG | 0.578140 | 1_1:-45235311 | None:intergenic |
| AAGGCATATGGAGAAGAAGG+TGG | 0.578876 | 1_1:+45233667 | Msa0023680:CDS |
| CGTGAGGAAGAGGGAAGTGA+GGG | 0.581230 | 1_1:+45233262 | Msa0023680:CDS |
| AAAGAAGTAATGAGCCGTGA+TGG | 0.583057 | 1_1:+45234360 | Msa0023680:CDS |
| CTATTCGAGCATGAGAGTGA+AGG | 0.585649 | 1_1:+45233456 | Msa0023680:CDS |
| GGGGACGACAACTTTGCGGT+GGG | 0.588721 | 1_1:+45234324 | Msa0023680:CDS |
| GTAAATGAGAGAGTGAACTA+AGG | 0.588850 | 1_1:+45235474 | Msa0023680:three_prime_UTR |
| AATGAACCTGTTCCAACCAC+AGG | 0.591199 | 1_1:-45232280 | None:intergenic |
| GGGTCAACAGCAGAACCACC+AGG | 0.591552 | 1_1:-45232370 | None:intergenic |
| CGGTGGAATCGATCTCTCGC+CGG | 0.594401 | 1_1:+45231913 | Msa0023680:CDS |
| TGAGATTAGTAATGCCGGAA+AGG | 0.595760 | 1_1:+45234767 | Msa0023680:CDS |
| ATGTATTAGAGTACAATGAC+AGG | 0.595845 | 1_1:+45235027 | Msa0023680:CDS |
| ATGGTAACGCGTATTGTTGG+TGG | 0.596456 | 1_1:-45231806 | None:intergenic |
| AGCGCAGTGAACGTGCAGCA+GGG | 0.596611 | 1_1:+45234427 | Msa0023680:CDS |
| TCGAATTAAGCTATCAAACT+GGG | 0.597882 | 1_1:-45234526 | None:intergenic |
| ACCAACAATACGCGTTACCA+TGG | 0.598887 | 1_1:+45231808 | Msa0023680:exon |
| GTACTCTAATACATCTGCAA+CGG | 0.605082 | 1_1:-45235018 | None:intergenic |
| ATTAGAGTACAATGACAGGC+AGG | 0.605990 | 1_1:+45235031 | Msa0023680:CDS |
| TATTCGAGCATGAGAGTGAA+GGG | 0.606142 | 1_1:+45233457 | Msa0023680:CDS |
| TCAGTCGAAAAGTGAGCGTG+AGG | 0.606612 | 1_1:+45235103 | Msa0023680:CDS |
| TGGGGACGACAACTTTGCGG+TGG | 0.607170 | 1_1:+45234323 | Msa0023680:CDS |
| CAGCTTAGTGGAGCTAAGAG+TGG | 0.608548 | 1_1:+45233072 | Msa0023680:CDS |
| AACATCGGTATCTGAGTTTG+GGG | 0.609041 | 1_1:+45234305 | Msa0023680:CDS |
| ATTCATCAGAGCTAAGCTGC+CGG | 0.610097 | 1_1:-45233711 | None:intergenic |
| TTTCATCATCTTAACAACCA+TGG | 0.613076 | 1_1:-45231825 | None:intergenic |
| CTAGATCAAAATGTTTGTCG+GGG | 0.614137 | 1_1:-45234605 | None:intergenic |
| CTTGAAATTCGATGGCAACA+CGG | 0.615137 | 1_1:+45234932 | Msa0023680:CDS |
| AAATTACTCTGGCAGGAGTG+AGG | 0.615141 | 1_1:+45233285 | Msa0023680:CDS |
| TGACTGAGTTTGTATCAACA+AGG | 0.618765 | 1_1:+45233221 | Msa0023680:CDS |
| TCATTGACACTCTTGGAGAG+AGG | 0.619433 | 1_1:+45234880 | Msa0023680:CDS |
| ACGGTGAAAGCGATCTCCCA+AGG | 0.619674 | 1_1:-45232127 | None:intergenic |
| CGTACTGATTAAGGAAAGTG+CGG | 0.624586 | 1_1:+45235360 | Msa0023680:three_prime_UTR |
| CTCATCAAAACTCTCTCCGG+TGG | 0.625057 | 1_1:+45231896 | Msa0023680:CDS |
| CAGAAGGAATGGATGAGGGA+AGG | 0.626120 | 1_1:+45234700 | Msa0023680:CDS |
| CGGCGAGAGATCGATTCCAC+CGG | 0.626152 | 1_1:-45231912 | None:intergenic |
| TCATTCAGAAGAGGTAAAGG+AGG | 0.629440 | 1_1:+45233369 | Msa0023680:CDS |
| CATCCAGAAGGAATGGATGA+GGG | 0.630978 | 1_1:+45234696 | Msa0023680:CDS |
| GAGAGTGAAGGGTGATGACG+AGG | 0.633012 | 1_1:+45233468 | Msa0023680:CDS |
| CATACAGTGAGTGAAAGAGA+AGG | 0.634779 | 1_1:-45232391 | None:intergenic |
| AGGGGATTCTCATTCAGAAG+AGG | 0.637034 | 1_1:+45233360 | Msa0023680:CDS |
| ATACAGTGAGTGAAAGAGAA+GGG | 0.637371 | 1_1:-45232390 | None:intergenic |
| CCAAATGTTATCGAAAGACA+TGG | 0.641206 | 1_1:-45234742 | None:intergenic |
| AAGTGAGCGTGAGGAAGACG+AGG | 0.642594 | 1_1:+45235112 | Msa0023680:CDS |
| AGTAATCACAAATCAGACGT+TGG | 0.645175 | 1_1:+45233505 | Msa0023680:CDS |
| TGATCCACCAGCATTTGCAA+AGG | 0.646546 | 1_1:-45233431 | None:intergenic |
| CAGAGGGAAAGAATCATGCA+AGG | 0.651300 | 1_1:+45235142 | Msa0023680:CDS |
| AGCATCTGTCACAGTAACTG+AGG | 0.656388 | 1_1:+45235325 | Msa0023680:CDS |
| TAGTTCGCTTCGTCGGAACG+CGG | 0.657900 | 1_1:+45231985 | Msa0023680:CDS |
| TTTCAGGAACAACGGAAAGG+GGG | 0.661017 | 1_1:-45234653 | None:intergenic |
| ATTCCACTTACAATTCCTGG+TGG | 0.678173 | 1_1:+45232355 | Msa0023680:CDS |
| CTTGGAGAGAGGCTTTACGA+AGG | 0.681723 | 1_1:+45234891 | Msa0023680:CDS |
| TTGCGCTACATAAGGCTCAG+AGG | 0.682948 | 1_1:-45233560 | None:intergenic |
| TTCAGGTGCAAATCGAACAT+CGG | 0.687805 | 1_1:+45234290 | Msa0023680:CDS |
| CCACAAGTAACGATGAACCT+CGG | 0.694167 | 1_1:+45234793 | Msa0023680:CDS |
| GCCAAAGAACAAGATTCCTG+TGG | 0.698542 | 1_1:+45232264 | Msa0023680:CDS |
| TAAAGGAGGATTCCAGTGTG+CGG | 0.701947 | 1_1:+45233383 | Msa0023680:CDS |
| ATGACAGTCACATAAAGCTG+AGG | 0.711509 | 1_1:+45234263 | Msa0023680:intron |
| AGGAGAGTCAGAGAAAGACG+AGG | 0.713897 | 1_1:+45233159 | Msa0023680:CDS |
| ATCAAGGAAACCGAGCCGTG+AGG | 0.718483 | 1_1:+45233246 | Msa0023680:CDS |
| CTTGTGTCTGAAGTTTCATG+TGG | 0.718633 | 1_1:-45234383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATCCTTATTATTTTT+GGG | - | chr1_1:45232694-45232713 | None:intergenic | 10.0% |
| !!! | TATAAAATCCTTATTATTTT+TGG | - | chr1_1:45232695-45232714 | None:intergenic | 10.0% |
| !! | AAAATTGATGAGATAAAAAA+AGG | - | chr1_1:45232459-45232478 | None:intergenic | 15.0% |
| !! | TTGAAGTTAAATTTAACAAA+AGG | + | chr1_1:45235429-45235448 | Msa0023680:three_prime_UTR | 15.0% |
| !! | TAAGAAAAATACGTTGAAAA+CGG | - | chr1_1:45232149-45232168 | None:intergenic | 20.0% |
| !! | ACAATGAAATTGAACAAAAA+GGG | - | chr1_1:45232174-45232193 | None:intergenic | 20.0% |
| !! | TACAATGAAATTGAACAAAA+AGG | - | chr1_1:45232175-45232194 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAAGAAATTG+TGG | - | chr1_1:45232432-45232451 | None:intergenic | 20.0% |
| !!! | ATAAGTATTGTATATGAAAC+TGG | + | chr1_1:45232585-45232604 | Msa0023680:intron | 20.0% |
| !!! | ATGAATTTTCATATACTTCA+GGG | - | chr1_1:45232621-45232640 | None:intergenic | 20.0% |
| !!! | AATGAATTTTCATATACTTC+AGG | - | chr1_1:45232622-45232641 | None:intergenic | 20.0% |
| !! | TCTATTCAATTAAGATGTTT+GGG | - | chr1_1:45232653-45232672 | None:intergenic | 20.0% |
| !!! | CACTTTTACAAAATCAATTT+TGG | - | chr1_1:45232787-45232806 | None:intergenic | 20.0% |
| !! | AAGAAGTTTCAAAAAAGATT+AGG | - | chr1_1:45234190-45234209 | None:intergenic | 20.0% |
| !!! | AATCTTTTTTGAAACTTCTT+TGG | + | chr1_1:45234190-45234209 | Msa0023680:intron | 20.0% |
| !! | AAGTTAAATTTAACAAAAGG+AGG | + | chr1_1:45235432-45235451 | Msa0023680:three_prime_UTR | 20.0% |
| !! | TAACATAAAGTTGTATGAAT+TGG | + | chr1_1:45235574-45235593 | Msa0023680:three_prime_UTR | 20.0% |
| !!! | AAATTTGGGATTTTTGATGT+AGG | + | chr1_1:45232228-45232247 | Msa0023680:intron | 25.0% |
| !!! | AATTTGGGATTTTTGATGTA+GGG | + | chr1_1:45232229-45232248 | Msa0023680:intron | 25.0% |
| !!! | GTTCAATTGAAATTTGTTGT+TGG | + | chr1_1:45232488-45232507 | Msa0023680:intron | 25.0% |
| !! | TACTTTATGGACTAAATTGA+TGG | - | chr1_1:45232519-45232538 | None:intergenic | 25.0% |
| ! | GAGAAAATTGGTATACTTTA+TGG | - | chr1_1:45232532-45232551 | None:intergenic | 25.0% |
| ! | GATTAAATTCGAGAGAAAAT+TGG | - | chr1_1:45232544-45232563 | None:intergenic | 25.0% |
| ! | GTCTATTCAATTAAGATGTT+TGG | - | chr1_1:45232654-45232673 | None:intergenic | 25.0% |
| ! | GAATAGTCCCAAAAATAATA+AGG | + | chr1_1:45232684-45232703 | Msa0023680:intron | 25.0% |
| !!! | TACAAAATCAATTTTGGTCA+AGG | - | chr1_1:45232781-45232800 | None:intergenic | 25.0% |
| ! | TCTACTTGAAGTTTAGATAT+TGG | - | chr1_1:45232892-45232911 | None:intergenic | 25.0% |
| ! | TCTGATGAATCTATTTCATT+TGG | + | chr1_1:45233724-45233743 | Msa0023680:CDS | 25.0% |
| ! | CTGATGAATCTATTTCATTT+GGG | + | chr1_1:45233725-45233744 | Msa0023680:CDS | 25.0% |
| ! | TGATGAATCTATTTCATTTG+GGG | + | chr1_1:45233726-45233745 | Msa0023680:CDS | 25.0% |
| ! | TATCCTTAAAATTCATCTCA+AGG | + | chr1_1:45233819-45233838 | Msa0023680:intron | 25.0% |
| ! | ATTTAGATAAACTTGTCAAG+AGG | - | chr1_1:45234151-45234170 | None:intergenic | 25.0% |
| ! | AAGTTTCAAAAAAGATTAGG+AGG | - | chr1_1:45234187-45234206 | None:intergenic | 25.0% |
| ! | TGATAAGCTAATTAACAACA+GGG | - | chr1_1:45234223-45234242 | None:intergenic | 25.0% |
| ! | TTCTAGATCAAAATGTTTGT+CGG | - | chr1_1:45234610-45234629 | None:intergenic | 25.0% |
| TTTCATCATCTTAACAACCA+TGG | - | chr1_1:45231828-45231847 | None:intergenic | 30.0% | |
| TGGTTGTTAAGATGATGAAA+TGG | + | chr1_1:45231828-45231847 | Msa0023680:CDS | 30.0% | |
| ! | AAGTTTGACTTCGAATTTAC+GGG | - | chr1_1:45231876-45231895 | None:intergenic | 30.0% |
| ! | GAAGTTTGACTTCGAATTTA+CGG | - | chr1_1:45231877-45231896 | None:intergenic | 30.0% |
| CTTTCTGCTAATAAAGACAA+TGG | + | chr1_1:45232097-45232116 | Msa0023680:CDS | 30.0% | |
| TTAAGGACTAAGCATATGTT+TGG | + | chr1_1:45232750-45232769 | Msa0023680:intron | 30.0% | |
| AGAATTGATTGTGACATGTT+TGG | - | chr1_1:45232954-45232973 | None:intergenic | 30.0% | |
| !! | TTCTACACTTCTAGAATCAA+TGG | + | chr1_1:45232970-45232989 | Msa0023680:intron | 30.0% |
| TTGTATCAACAAGGAAATCA+AGG | + | chr1_1:45233230-45233249 | Msa0023680:CDS | 30.0% | |
| ! | GAAACAATAGAATCCTCTTT+TGG | - | chr1_1:45233538-45233557 | None:intergenic | 30.0% |
| TTCAGATCTCCTAAATCTAA+AGG | + | chr1_1:45233628-45233647 | Msa0023680:CDS | 30.0% | |
| !!! | ATGATATTGATTTTGATCGC+CGG | + | chr1_1:45233692-45233711 | Msa0023680:CDS | 30.0% |
| GATGACGAAAAACAATGAAA+AGG | - | chr1_1:45233764-45233783 | None:intergenic | 30.0% | |
| TTTCGTCATCTACATGTTTA+TGG | + | chr1_1:45233774-45233793 | Msa0023680:intron | 30.0% | |
| TGTTTATGGCACAAGAAAAT+AGG | + | chr1_1:45233788-45233807 | Msa0023680:intron | 30.0% | |
| GTTTATGGCACAAGAAAATA+GGG | + | chr1_1:45233789-45233808 | Msa0023680:intron | 30.0% | |
| ! | TGACCTTGAGATGAATTTTA+AGG | - | chr1_1:45233825-45233844 | None:intergenic | 30.0% |
| TTAATGTATGAACTCTTCTG+GGG | - | chr1_1:45233959-45233978 | None:intergenic | 30.0% | |
| CTTAATGTATGAACTCTTCT+GGG | - | chr1_1:45233960-45233979 | None:intergenic | 30.0% | |
| ACTTAATGTATGAACTCTTC+TGG | - | chr1_1:45233961-45233980 | None:intergenic | 30.0% | |
| TATTTAGATCATTCCCATTG+AGG | - | chr1_1:45234112-45234131 | None:intergenic | 30.0% | |
| CTGATAAGCTAATTAACAAC+AGG | - | chr1_1:45234224-45234243 | None:intergenic | 30.0% | |
| TCGAATTAAGCTATCAAACT+GGG | - | chr1_1:45234529-45234548 | None:intergenic | 30.0% | |
| ! | TTTGATAGCTTAATTCGAGA+TGG | + | chr1_1:45234531-45234550 | Msa0023680:CDS | 30.0% |
| TATGTGAAAACCAGACATAT+AGG | + | chr1_1:45234574-45234593 | Msa0023680:CDS | 30.0% | |
| ATGTGAAAACCAGACATATA+GGG | + | chr1_1:45234575-45234594 | Msa0023680:CDS | 30.0% | |
| TCTAGATCAAAATGTTTGTC+GGG | - | chr1_1:45234609-45234628 | None:intergenic | 30.0% | |
| ! | AAACCTATAAAGGACTTTTC+AGG | - | chr1_1:45234672-45234691 | None:intergenic | 30.0% |
| TGGATGAAAGAAACCTATAA+AGG | - | chr1_1:45234682-45234701 | None:intergenic | 30.0% | |
| CATGTCTTTCGATAACATTT+GGG | + | chr1_1:45234743-45234762 | Msa0023680:CDS | 30.0% | |
| CAACTGATAATAAAAATCCG+AGG | - | chr1_1:45234813-45234832 | None:intergenic | 30.0% | |
| ! | CTCGGATTTTTATTATCAGT+TGG | + | chr1_1:45234811-45234830 | Msa0023680:CDS | 30.0% |
| ! | CAACTTTAAGGATGAAGAAA+TGG | - | chr1_1:45234842-45234861 | None:intergenic | 30.0% |
| GCATATATCTTGAAATTCGA+TGG | + | chr1_1:45234924-45234943 | Msa0023680:CDS | 30.0% | |
| ATGTATTAGAGTACAATGAC+AGG | + | chr1_1:45235027-45235046 | Msa0023680:CDS | 30.0% | |
| TCTGCTTGTAATTCTCTAAT+AGG | - | chr1_1:45235197-45235216 | None:intergenic | 30.0% | |
| ATTTGTAGTCTATGATGAAG+TGG | - | chr1_1:45235248-45235267 | None:intergenic | 30.0% | |
| !! | ACACATAATCGTACTGATTA+AGG | + | chr1_1:45235351-45235370 | Msa0023680:exon | 30.0% |
| !! | TACTCTAACTAGTCTTACTA+TGG | + | chr1_1:45235386-45235405 | Msa0023680:three_prime_UTR | 30.0% |
| ATGATGAGAAGGAAGAAAGA+AGG | - | chr1_1:45231758-45231777 | None:intergenic | 35.0% | |
| ACTTCGAATTTACGGGAAAT+TGG | - | chr1_1:45231869-45231888 | None:intergenic | 35.0% | |
| ACCTTTCCAACGAATTTCAA+CGG | - | chr1_1:45231951-45231970 | None:intergenic | 35.0% | |
| ! | TGTGAGAAATTTTACTGGTG+AGG | + | chr1_1:45232009-45232028 | Msa0023680:CDS | 35.0% |
| !!! | ATGAAAACGATGTCGTTTTG+TGG | + | chr1_1:45232047-45232066 | Msa0023680:CDS | 35.0% |
| !!! | TGAAAACGATGTCGTTTTGT+GGG | + | chr1_1:45232048-45232067 | Msa0023680:CDS | 35.0% |
| ! | AAGACAATGGTTTTCATCCT+TGG | + | chr1_1:45232110-45232129 | Msa0023680:CDS | 35.0% |
| ! | AGACAATGGTTTTCATCCTT+GGG | + | chr1_1:45232111-45232130 | Msa0023680:CDS | 35.0% |
| ATACAGTGAGTGAAAGAGAA+GGG | - | chr1_1:45232393-45232412 | None:intergenic | 35.0% | |
| ACTTCAAGTAGAATCAGTTC+TGG | + | chr1_1:45232900-45232919 | Msa0023680:intron | 35.0% | |
| !! | ACACTTCTAGAATCAATGGA+TGG | + | chr1_1:45232974-45232993 | Msa0023680:intron | 35.0% |
| TGACTGAGTTTGTATCAACA+AGG | + | chr1_1:45233221-45233240 | Msa0023680:CDS | 35.0% | |
| !! | TGACTCTCTTGATGATTTTG+AGG | + | chr1_1:45233336-45233355 | Msa0023680:CDS | 35.0% |
| !! | TCTCTTGATGATTTTGAGGA+AGG | + | chr1_1:45233340-45233359 | Msa0023680:CDS | 35.0% |
| !! | CTCTTGATGATTTTGAGGAA+GGG | + | chr1_1:45233341-45233360 | Msa0023680:CDS | 35.0% |
| !! | TCTTGATGATTTTGAGGAAG+GGG | + | chr1_1:45233342-45233361 | Msa0023680:CDS | 35.0% |
| TTCTCATTCAGAAGAGGTAA+AGG | + | chr1_1:45233366-45233385 | Msa0023680:CDS | 35.0% | |
| AGTAATCACAAATCAGACGT+TGG | + | chr1_1:45233505-45233524 | Msa0023680:CDS | 35.0% | |
| ATTGGACTCTAAACACGAAT+TGG | - | chr1_1:45233936-45233955 | None:intergenic | 35.0% | |
| GAATATGTGCATGAGTACAA+AGG | + | chr1_1:45233990-45234009 | Msa0023680:intron | 35.0% | |
| ATGAGTACAAAGGCTTAGAT+TGG | + | chr1_1:45234000-45234019 | Msa0023680:intron | 35.0% | |
| TGAGTACAAAGGCTTAGATT+GGG | + | chr1_1:45234001-45234020 | Msa0023680:intron | 35.0% | |
| AAGGGACATCTTGAACTTAA+CGG | - | chr1_1:45234066-45234085 | None:intergenic | 35.0% | |
| TGCTGAAAGAGAAGTAGAAA+GGG | - | chr1_1:45234084-45234103 | None:intergenic | 35.0% | |
| TTGCTGAAAGAGAAGTAGAA+AGG | - | chr1_1:45234085-45234104 | None:intergenic | 35.0% | |
| !! | AACTTGTCAAGAGGTATCAA+TGG | - | chr1_1:45234142-45234161 | None:intergenic | 35.0% |
| TTGTTGCTGTAATTGCTGAT+TGG | + | chr1_1:45234469-45234488 | Msa0023680:CDS | 35.0% | |
| CTATCAAACTGGGACTTTAT+GGG | - | chr1_1:45234519-45234538 | None:intergenic | 35.0% | |
| CTCGAATTAAGCTATCAAAC+TGG | - | chr1_1:45234530-45234549 | None:intergenic | 35.0% | |
| CTAGATCAAAATGTTTGTCG+GGG | - | chr1_1:45234608-45234627 | None:intergenic | 35.0% | |
| TGATCTAGAAACAGTTGTTC+AGG | + | chr1_1:45234620-45234639 | Msa0023680:CDS | 35.0% | |
| !! | AAAGGACTTTTCAGGAACAA+CGG | - | chr1_1:45234664-45234683 | None:intergenic | 35.0% |
| GTTCCTGAAAAGTCCTTTAT+AGG | + | chr1_1:45234666-45234685 | Msa0023680:CDS | 35.0% | |
| ATAGGTTTCTTTCATCCAGA+AGG | + | chr1_1:45234684-45234703 | Msa0023680:CDS | 35.0% | |
| TTTCTTTCATCCAGAAGGAA+TGG | + | chr1_1:45234689-45234708 | Msa0023680:CDS | 35.0% | |
| CCAAATGTTATCGAAAGACA+TGG | - | chr1_1:45234745-45234764 | None:intergenic | 35.0% | |
| CCATGTCTTTCGATAACATT+TGG | + | chr1_1:45234742-45234761 | Msa0023680:CDS | 35.0% | |
| ! | AAGAATCGGCTTCAACTTTA+AGG | - | chr1_1:45234854-45234873 | None:intergenic | 35.0% |
| GTCAATGATGCAGTAAGAAT+CGG | - | chr1_1:45234868-45234887 | None:intergenic | 35.0% | |
| GTACTCTAATACATCTGCAA+CGG | - | chr1_1:45235021-45235040 | None:intergenic | 35.0% | |
| GGTTCAGCAAATCAATGATA+AGG | + | chr1_1:45235052-45235071 | Msa0023680:CDS | 35.0% | |
| GCAAATCAATGATAAGGAGT+TGG | + | chr1_1:45235058-45235077 | Msa0023680:CDS | 35.0% | |
| TTACAAGCAGATGTGAAGAA+AGG | + | chr1_1:45235206-45235225 | Msa0023680:CDS | 35.0% | |
| AGGATGATTTGAACTGTTGA+TGG | + | chr1_1:45235452-45235471 | Msa0023680:three_prime_UTR | 35.0% | |
| GTAAATGAGAGAGTGAACTA+AGG | + | chr1_1:45235474-45235493 | Msa0023680:three_prime_UTR | 35.0% | |
| !!! | AGTTTTGAGCTCAGATGAAA+AGG | - | chr1_1:45235545-45235564 | None:intergenic | 35.0% |
| ! | TCATCTGAGCTCAAAACTTT+TGG | + | chr1_1:45235547-45235566 | Msa0023680:three_prime_UTR | 35.0% |
| GAATCAGAGTGCAAACAAAA+AGG | - | chr1_1:45235625-45235644 | None:intergenic | 35.0% | |
| ! | GTCATGAGCTGTATTTTTCT+GGG | - | chr1_1:45235680-45235699 | None:intergenic | 35.0% |
| ! | TGTCATGAGCTGTATTTTTC+TGG | - | chr1_1:45235681-45235700 | None:intergenic | 35.0% |
| AGAAAAATACAGCTCATGAC+AGG | + | chr1_1:45235680-45235699 | Msa0023680:three_prime_UTR | 35.0% | |
| GGAAGAAGAAGATGATGAGA+AGG | - | chr1_1:45231769-45231788 | None:intergenic | 40.0% | |
| GTGGTTGAGAAAAGAGACAA+AGG | - | chr1_1:45231790-45231809 | None:intergenic | 40.0% | |
| AATTTACGGGAAATTGGTGG+GGG | - | chr1_1:45231863-45231882 | None:intergenic | 40.0% | |
| GAATTTACGGGAAATTGGTG+GGG | - | chr1_1:45231864-45231883 | None:intergenic | 40.0% | |
| CGAATTTACGGGAAATTGGT+GGG | - | chr1_1:45231865-45231884 | None:intergenic | 40.0% | |
| TCGAATTTACGGGAAATTGG+TGG | - | chr1_1:45231866-45231885 | None:intergenic | 40.0% | |
| CTTCTCATCAAAACTCTCTC+CGG | + | chr1_1:45231893-45231912 | Msa0023680:CDS | 40.0% | |
| AGCGAACTAAGAGCAAGTTT+AGG | - | chr1_1:45231974-45231993 | None:intergenic | 40.0% | |
| ! | GCGGTTGTGAGAAATTTTAC+TGG | + | chr1_1:45232004-45232023 | Msa0023680:CDS | 40.0% |
| ! | ACATCGTTTTCATCTCCCTT+AGG | - | chr1_1:45232040-45232059 | None:intergenic | 40.0% |
| TGATGTAGGGTTTGAATCAG+AGG | + | chr1_1:45232242-45232261 | Msa0023680:intron | 40.0% | |
| ACCACAGGAATCTTGTTCTT+TGG | - | chr1_1:45232268-45232287 | None:intergenic | 40.0% | |
| AAGAACAAGATTCCTGTGGT+TGG | + | chr1_1:45232268-45232287 | Msa0023680:CDS | 40.0% | |
| TGCATCTGTTGTTGATCAGA+AGG | + | chr1_1:45232318-45232337 | Msa0023680:CDS | 40.0% | |
| AGCATTCCACTTACAATTCC+TGG | + | chr1_1:45232352-45232371 | Msa0023680:CDS | 40.0% | |
| ATTCCACTTACAATTCCTGG+TGG | + | chr1_1:45232355-45232374 | Msa0023680:CDS | 40.0% | |
| CATACAGTGAGTGAAAGAGA+AGG | - | chr1_1:45232394-45232413 | None:intergenic | 40.0% | |
| TATCTGCACACAATCAAGAG+CGG | - | chr1_1:45233047-45233066 | None:intergenic | 40.0% | |
| GCAGATATCAATCAGCTTAG+TGG | + | chr1_1:45233060-45233079 | Msa0023680:intron | 40.0% | |
| CAAGAGAGTCAGAGTCAAAA+GGG | - | chr1_1:45233327-45233346 | None:intergenic | 40.0% | |
| TCAAGAGAGTCAGAGTCAAA+AGG | - | chr1_1:45233328-45233347 | None:intergenic | 40.0% | |
| TCATTCAGAAGAGGTAAAGG+AGG | + | chr1_1:45233369-45233388 | Msa0023680:CDS | 40.0% | |
| TATTCGAGCATGAGAGTGAA+GGG | + | chr1_1:45233457-45233476 | Msa0023680:CDS | 40.0% | |
| CTTGAACTTTGCGCTACATA+AGG | - | chr1_1:45233571-45233590 | None:intergenic | 40.0% | |
| AAGGGCTCTCCTTTAGATTT+AGG | - | chr1_1:45233640-45233659 | None:intergenic | 40.0% | |
| CCATATGCCTTCTTCAACAA+GGG | - | chr1_1:45233658-45233677 | None:intergenic | 40.0% | |
| TCCATATGCCTTCTTCAACA+AGG | - | chr1_1:45233659-45233678 | None:intergenic | 40.0% | |
| ! | AAGAAGGCATATGGAGAAGA+AGG | + | chr1_1:45233664-45233683 | Msa0023680:CDS | 40.0% |
| ACATCTTGAACTTAACGGGA+AGG | - | chr1_1:45234061-45234080 | None:intergenic | 40.0% | |
| AGGGACATCTTGAACTTAAC+GGG | - | chr1_1:45234065-45234084 | None:intergenic | 40.0% | |
| TTTCAGCAACTCTCCTCAAT+GGG | + | chr1_1:45234096-45234115 | Msa0023680:intron | 40.0% | |
| ATGACAGTCACATAAAGCTG+AGG | + | chr1_1:45234263-45234282 | Msa0023680:intron | 40.0% | |
| TTCAGGTGCAAATCGAACAT+CGG | + | chr1_1:45234290-45234309 | Msa0023680:CDS | 40.0% | |
| GAACATCGGTATCTGAGTTT+GGG | + | chr1_1:45234304-45234323 | Msa0023680:CDS | 40.0% | |
| AACATCGGTATCTGAGTTTG+GGG | + | chr1_1:45234305-45234324 | Msa0023680:CDS | 40.0% | |
| AAAGAAGTAATGAGCCGTGA+TGG | + | chr1_1:45234360-45234379 | Msa0023680:CDS | 40.0% | |
| ! | CTTGTGTCTGAAGTTTCATG+TGG | - | chr1_1:45234386-45234405 | None:intergenic | 40.0% |
| GCTATCAAACTGGGACTTTA+TGG | - | chr1_1:45234520-45234539 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAACAACGGAAAG+GGG | - | chr1_1:45234657-45234676 | None:intergenic | 40.0% |
| !! | CTTTTCAGGAACAACGGAAA+GGG | - | chr1_1:45234658-45234677 | None:intergenic | 40.0% |
| !! | ACTTTTCAGGAACAACGGAA+AGG | - | chr1_1:45234659-45234678 | None:intergenic | 40.0% |
| TGGGATGAGATTAGTAATGC+CGG | + | chr1_1:45234762-45234781 | Msa0023680:CDS | 40.0% | |
| TGAGATTAGTAATGCCGGAA+AGG | + | chr1_1:45234767-45234786 | Msa0023680:CDS | 40.0% | |
| TACTGCATCATTGACACTCT+TGG | + | chr1_1:45234873-45234892 | Msa0023680:CDS | 40.0% | |
| CTTGAAATTCGATGGCAACA+CGG | + | chr1_1:45234932-45234951 | Msa0023680:CDS | 40.0% | |
| ATTAGAGTACAATGACAGGC+AGG | + | chr1_1:45235031-45235050 | Msa0023680:CDS | 40.0% | |
| AATGATAAGGAGTTGGAGTC+TGG | + | chr1_1:45235065-45235084 | Msa0023680:CDS | 40.0% | |
| !! | CGTACTGATTAAGGAAAGTG+CGG | + | chr1_1:45235360-45235379 | Msa0023680:three_prime_UTR | 40.0% |
| AACTAAGGTTGTGTCTGTCT+AGG | + | chr1_1:45235489-45235508 | Msa0023680:three_prime_UTR | 40.0% | |
| ACTAAGGTTGTGTCTGTCTA+GGG | + | chr1_1:45235490-45235509 | Msa0023680:three_prime_UTR | 40.0% | |
| ! | ATGAGCTGTATTTTTCTGGG+TGG | - | chr1_1:45235677-45235696 | None:intergenic | 40.0% |
| ! | ATGGTAACGCGTATTGTTGG+TGG | - | chr1_1:45231809-45231828 | None:intergenic | 45.0% |
| ACCAACAATACGCGTTACCA+TGG | + | chr1_1:45231808-45231827 | Msa0023680:exon | 45.0% | |
| ! | ACCATGGTAACGCGTATTGT+TGG | - | chr1_1:45231812-45231831 | None:intergenic | 45.0% |
| AGATGATGAAATGGCGTCCA+TGG | + | chr1_1:45231837-45231856 | Msa0023680:CDS | 45.0% | |
| TCAACGGCGAATGTATTCTC+CGG | - | chr1_1:45231935-45231954 | None:intergenic | 45.0% | |
| CATTCGCCGTTGAAATTCGT+TGG | + | chr1_1:45231942-45231961 | Msa0023680:CDS | 45.0% | |
| GCCGTTGAAATTCGTTGGAA+AGG | + | chr1_1:45231947-45231966 | Msa0023680:CDS | 45.0% | |
| TTGCTCTTAGTTCGCTTCGT+CGG | + | chr1_1:45231978-45231997 | Msa0023680:CDS | 45.0% | |
| GCCAAAGAACAAGATTCCTG+TGG | + | chr1_1:45232264-45232283 | Msa0023680:CDS | 45.0% | |
| AAGATTCCTGTGGTTGGAAC+AGG | + | chr1_1:45232274-45232293 | Msa0023680:CDS | 45.0% | |
| AATGAACCTGTTCCAACCAC+AGG | - | chr1_1:45232283-45232302 | None:intergenic | 45.0% | |
| GAACCACCAGGAATTGTAAG+TGG | - | chr1_1:45232361-45232380 | None:intergenic | 45.0% | |
| GCTCAAGAGAATAGTGAGCT+TGG | + | chr1_1:45233094-45233113 | Msa0023680:CDS | 45.0% | |
| ! | GACTCTCCTGATTGGTTCAA+GGG | - | chr1_1:45233148-45233167 | None:intergenic | 45.0% |
| ! | TGACTCTCCTGATTGGTTCA+AGG | - | chr1_1:45233149-45233168 | None:intergenic | 45.0% |
| CTTTCTCTGACTCTCCTGAT+TGG | - | chr1_1:45233156-45233175 | None:intergenic | 45.0% | |
| GAGGTTTCCACTATCAAAGC+TGG | + | chr1_1:45233178-45233197 | Msa0023680:CDS | 45.0% | |
| ! | CCTAAGACCAGCTTTGATAG+TGG | - | chr1_1:45233188-45233207 | None:intergenic | 45.0% |
| !! | CCACTATCAAAGCTGGTCTT+AGG | + | chr1_1:45233185-45233204 | Msa0023680:CDS | 45.0% |
| GGAAGTGAGGGAAATTACTC+TGG | + | chr1_1:45233274-45233293 | Msa0023680:CDS | 45.0% | |
| AAATTACTCTGGCAGGAGTG+AGG | + | chr1_1:45233285-45233304 | Msa0023680:CDS | 45.0% | |
| AGGGGATTCTCATTCAGAAG+AGG | + | chr1_1:45233360-45233379 | Msa0023680:CDS | 45.0% | |
| TAAAGGAGGATTCCAGTGTG+CGG | + | chr1_1:45233383-45233402 | Msa0023680:CDS | 45.0% | |
| !! | AAACTGGCCTTTGCAAATGC+TGG | + | chr1_1:45233424-45233443 | Msa0023680:CDS | 45.0% |
| TGATCCACCAGCATTTGCAA+AGG | - | chr1_1:45233434-45233453 | None:intergenic | 45.0% | |
| CTATTCGAGCATGAGAGTGA+AGG | + | chr1_1:45233456-45233475 | Msa0023680:CDS | 45.0% | |
| CGTTGGAAGTTTGCCAAAAG+AGG | + | chr1_1:45233522-45233541 | Msa0023680:CDS | 45.0% | |
| CTCAACTTTCTCTTCCTCCA+AGG | - | chr1_1:45233607-45233626 | None:intergenic | 45.0% | |
| ! | CCCTTGTTGAAGAAGGCATA+TGG | + | chr1_1:45233655-45233674 | Msa0023680:CDS | 45.0% |
| AAGGCATATGGAGAAGAAGG+TGG | + | chr1_1:45233667-45233686 | Msa0023680:CDS | 45.0% | |
| ATTCATCAGAGCTAAGCTGC+CGG | - | chr1_1:45233714-45233733 | None:intergenic | 45.0% | |
| GGCACAAGAAAATAGGGTGT+TGG | + | chr1_1:45233795-45233814 | Msa0023680:intron | 45.0% | |
| ! | GTATGAACTCTTCTGGGGAT+TGG | - | chr1_1:45233954-45233973 | None:intergenic | 45.0% |
| CTTTCAGCAACTCTCCTCAA+TGG | + | chr1_1:45234095-45234114 | Msa0023680:intron | 45.0% | |
| CATAAAGCTGAGGACGATTC+AGG | + | chr1_1:45234273-45234292 | Msa0023680:CDS | 45.0% | |
| CGAACATCGGTATCTGAGTT+TGG | + | chr1_1:45234303-45234322 | Msa0023680:CDS | 45.0% | |
| GAAGTTTCATGTGGCCATCA+CGG | - | chr1_1:45234377-45234396 | None:intergenic | 45.0% | |
| ! | TTCACTGCGCTGATCAATTG+AGG | - | chr1_1:45234418-45234437 | None:intergenic | 45.0% |
| ACTTTATGGGCATTAGGTCG+CGG | - | chr1_1:45234506-45234525 | None:intergenic | 45.0% | |
| ACTGGGACTTTATGGGCATT+AGG | - | chr1_1:45234512-45234531 | None:intergenic | 45.0% | |
| TTCGAGATGGCTCATTAGAG+TGG | + | chr1_1:45234544-45234563 | Msa0023680:CDS | 45.0% | |
| TTTCAGGAACAACGGAAAGG+GGG | - | chr1_1:45234656-45234675 | None:intergenic | 45.0% | |
| TCATCCAGAAGGAATGGATG+AGG | + | chr1_1:45234695-45234714 | Msa0023680:CDS | 45.0% | |
| CATCCAGAAGGAATGGATGA+GGG | + | chr1_1:45234696-45234715 | Msa0023680:CDS | 45.0% | |
| ! | GGAAGGTTCGATTTTCTGCA+TGG | + | chr1_1:45234717-45234736 | Msa0023680:CDS | 45.0% |
| GTTACTTGTGGAGTCCTTTC+CGG | - | chr1_1:45234784-45234803 | None:intergenic | 45.0% | |
| CCACAAGTAACGATGAACCT+CGG | + | chr1_1:45234793-45234812 | Msa0023680:CDS | 45.0% | |
| TCATTGACACTCTTGGAGAG+AGG | + | chr1_1:45234880-45234899 | Msa0023680:CDS | 45.0% | |
| ! | GTTTTCGTCTGACGATTGAG+TGG | - | chr1_1:45234979-45234998 | None:intergenic | 45.0% |
| TCGTCAGACGAAAACACAAC+CGG | + | chr1_1:45234984-45235003 | Msa0023680:CDS | 45.0% | |
| !! | TGCAACGGTTTGTTGTTCAC+CGG | - | chr1_1:45235006-45235025 | None:intergenic | 45.0% |
| !! | AAGACGAGGTTTTGTGCAGA+GGG | + | chr1_1:45235126-45235145 | Msa0023680:CDS | 45.0% |
| CAGAGGGAAAGAATCATGCA+AGG | + | chr1_1:45235142-45235161 | Msa0023680:CDS | 45.0% | |
| GTCTTGTGATGTTGTTCCTG+TGG | + | chr1_1:45235295-45235314 | Msa0023680:CDS | 45.0% | |
| AGCATCTGTCACAGTAACTG+AGG | + | chr1_1:45235325-45235344 | Msa0023680:CDS | 45.0% | |
| !!! | TTTAAAAATTCAATTTTTAA+CGG | - | chr1_1:45232210-45232229 | None:intergenic | 5.0% |
| !!! | AAAATTGAATTTTTAAAATT+TGG | + | chr1_1:45232213-45232232 | Msa0023680:intron | 5.0% |
| !!! | AAATTGAATTTTTAAAATTT+GGG | + | chr1_1:45232214-45232233 | Msa0023680:intron | 5.0% |
| !!! | TTATTTTTATATACTTTTTA+TGG | - | chr1_1:45232566-45232585 | None:intergenic | 5.0% |
| !!! | ATTATATTTATATACTTTTA+AGG | + | chr1_1:45232733-45232752 | Msa0023680:intron | 5.0% |
| CTCATCAAAACTCTCTCCGG+TGG | + | chr1_1:45231896-45231915 | Msa0023680:CDS | 50.0% | |
| TACTGGTGAGGCTCATCCTA+AGG | + | chr1_1:45232021-45232040 | Msa0023680:CDS | 50.0% | |
| ACTGGTGAGGCTCATCCTAA+GGG | + | chr1_1:45232022-45232041 | Msa0023680:CDS | 50.0% | |
| CAGCTTAGTGGAGCTAAGAG+TGG | + | chr1_1:45233072-45233091 | Msa0023680:CDS | 50.0% | |
| TGGTTCAAGGGTGATGCAAC+AGG | - | chr1_1:45233136-45233155 | None:intergenic | 50.0% | |
| GCATCACCCTTGAACCAATC+AGG | + | chr1_1:45233139-45233158 | Msa0023680:CDS | 50.0% | |
| AGGAGAGTCAGAGAAAGACG+AGG | + | chr1_1:45233159-45233178 | Msa0023680:CDS | 50.0% | |
| GTGAGGGAAATTACTCTGGC+AGG | + | chr1_1:45233278-45233297 | Msa0023680:CDS | 50.0% | |
| GTGCGGAAATCGTTCAGCTA+CGG | + | chr1_1:45233400-45233419 | Msa0023680:CDS | 50.0% | |
| TGCGGAAATCGTTCAGCTAC+GGG | + | chr1_1:45233401-45233420 | Msa0023680:CDS | 50.0% | |
| ATCGTTCAGCTACGGGAAAC+TGG | + | chr1_1:45233408-45233427 | Msa0023680:CDS | 50.0% | |
| ! | TGAAGGGTGATGACGAGGAT+TGG | + | chr1_1:45233473-45233492 | Msa0023680:CDS | 50.0% |
| ! | GAAGGGTGATGACGAGGATT+GGG | + | chr1_1:45233474-45233493 | Msa0023680:CDS | 50.0% |
| TTGCGCTACATAAGGCTCAG+AGG | - | chr1_1:45233563-45233582 | None:intergenic | 50.0% | |
| CAAGACGCAGCTTATTGCCT+TGG | + | chr1_1:45233587-45233606 | Msa0023680:CDS | 50.0% | |
| AGGAGAGCCCTTGTTGAAGA+AGG | + | chr1_1:45233648-45233667 | Msa0023680:CDS | 50.0% | |
| GTTTGGGGACGACAACTTTG+CGG | + | chr1_1:45234320-45234339 | Msa0023680:CDS | 50.0% | |
| ! | GCATTAGGTCGCGGTTGTTT+TGG | - | chr1_1:45234497-45234516 | None:intergenic | 50.0% |
| GGAATCGCTCCCTATATGTC+TGG | - | chr1_1:45234587-45234606 | None:intergenic | 50.0% | |
| ! | AACGGAAAGGGGGCGAATTT+TGG | - | chr1_1:45234646-45234665 | None:intergenic | 50.0% |
| CTTCCCTCATCCATTCCTTC+TGG | - | chr1_1:45234702-45234721 | None:intergenic | 50.0% | |
| CAGAAGGAATGGATGAGGGA+AGG | + | chr1_1:45234700-45234719 | Msa0023680:CDS | 50.0% | |
| CCGAGGTTCATCGTTACTTG+TGG | - | chr1_1:45234796-45234815 | None:intergenic | 50.0% | |
| CTTGGAGAGAGGCTTTACGA+AGG | + | chr1_1:45234891-45234910 | Msa0023680:CDS | 50.0% | |
| TCTGACGATTGAGTGGCATC+TGG | - | chr1_1:45234972-45234991 | None:intergenic | 50.0% | |
| TCAGTCGAAAAGTGAGCGTG+AGG | + | chr1_1:45235103-45235122 | Msa0023680:CDS | 50.0% | |
| !! | GAAGACGAGGTTTTGTGCAG+AGG | + | chr1_1:45235125-45235144 | Msa0023680:CDS | 50.0% |
| ACAGATGCTTCTTCAGCCAC+AGG | - | chr1_1:45235314-45235333 | None:intergenic | 50.0% | |
| TAGTTCGCTTCGTCGGAACG+CGG | + | chr1_1:45231985-45232004 | Msa0023680:CDS | 55.0% | |
| ACGGTGAAAGCGATCTCCCA+AGG | - | chr1_1:45232130-45232149 | None:intergenic | 55.0% | |
| ATCAAGGAAACCGAGCCGTG+AGG | + | chr1_1:45233246-45233265 | Msa0023680:CDS | 55.0% | |
| AAACCGAGCCGTGAGGAAGA+GGG | + | chr1_1:45233253-45233272 | Msa0023680:CDS | 55.0% | |
| CCTCACTTCCCTCTTCCTCA+CGG | - | chr1_1:45233264-45233283 | None:intergenic | 55.0% | |
| CGTGAGGAAGAGGGAAGTGA+GGG | + | chr1_1:45233262-45233281 | Msa0023680:CDS | 55.0% | |
| TACTCTGGCAGGAGTGAGGA+TGG | + | chr1_1:45233289-45233308 | Msa0023680:CDS | 55.0% | |
| GCTGAACGATTTCCGCACAC+TGG | - | chr1_1:45233398-45233417 | None:intergenic | 55.0% | |
| ! | CTGGCCTTTGCAAATGCTGG+TGG | + | chr1_1:45233427-45233446 | Msa0023680:CDS | 55.0% |
| ! | GAGAGTGAAGGGTGATGACG+AGG | + | chr1_1:45233468-45233487 | Msa0023680:CDS | 55.0% |
| GACGCAGCTTATTGCCTTGG+AGG | + | chr1_1:45233590-45233609 | Msa0023680:CDS | 55.0% | |
| ACAACTTTGCGGTGGGCAGT+TGG | + | chr1_1:45234331-45234350 | Msa0023680:CDS | 55.0% | |
| CAACTTTGCGGTGGGCAGTT+GGG | + | chr1_1:45234332-45234351 | Msa0023680:CDS | 55.0% | |
| ! | TTGGAGTCTGGTGCTGAGAC+AGG | + | chr1_1:45235077-45235096 | Msa0023680:CDS | 55.0% |
| AAGTGAGCGTGAGGAAGACG+AGG | + | chr1_1:45235112-45235131 | Msa0023680:CDS | 55.0% | |
| ! | CGGCGAGAGATCGATTCCAC+CGG | - | chr1_1:45231915-45231934 | None:intergenic | 60.0% |
| CGGTGGAATCGATCTCTCGC+CGG | + | chr1_1:45231913-45231932 | Msa0023680:CDS | 60.0% | |
| GGGTCAACAGCAGAACCACC+AGG | - | chr1_1:45232373-45232392 | None:intergenic | 60.0% | |
| GAAACCGAGCCGTGAGGAAG+AGG | + | chr1_1:45233252-45233271 | Msa0023680:CDS | 60.0% | |
| CTTCCCTCTTCCTCACGGCT+CGG | - | chr1_1:45233259-45233278 | None:intergenic | 60.0% | |
| CCGTGAGGAAGAGGGAAGTG+AGG | + | chr1_1:45233261-45233280 | Msa0023680:CDS | 60.0% | |
| TGGGGACGACAACTTTGCGG+TGG | + | chr1_1:45234323-45234342 | Msa0023680:CDS | 60.0% | |
| GGGGACGACAACTTTGCGGT+GGG | + | chr1_1:45234324-45234343 | Msa0023680:CDS | 60.0% | |
| AGCGCAGTGAACGTGCAGCA+GGG | + | chr1_1:45234427-45234446 | Msa0023680:CDS | 60.0% | |
| CGGGAAATTGGTGGGGGCCA+TGG | - | chr1_1:45231857-45231876 | None:intergenic | 65.0% | |
| CAGCGCAGTGAACGTGCAGC+AGG | + | chr1_1:45234426-45234445 | Msa0023680:CDS | 65.0% | |
| GCGCAGTGAACGTGCAGCAG+GGG | + | chr1_1:45234428-45234447 | Msa0023680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45231743 | 45235745 | 45231743 | ID=Msa0023680;Name=Msa0023680 |
| chr1_1 | mRNA | 45231743 | 45235745 | 45231743 | ID=Msa0023680-mRNA-1;Parent=Msa0023680;Name=Msa0023680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84|1|1|1|1|1|4|387|753 |
| chr1_1 | exon | 45231743 | 45232156 | 45231743 | ID=Msa0023680-mRNA-1:exon:12942;Parent=Msa0023680-mRNA-1 |
| chr1_1 | exon | 45232250 | 45232408 | 45232250 | ID=Msa0023680-mRNA-1:exon:12943;Parent=Msa0023680-mRNA-1 |
| chr1_1 | exon | 45233064 | 45233747 | 45233064 | ID=Msa0023680-mRNA-1:exon:12944;Parent=Msa0023680-mRNA-1 |
| chr1_1 | exon | 45234270 | 45235745 | 45234270 | ID=Msa0023680-mRNA-1:exon:12945;Parent=Msa0023680-mRNA-1 |
| chr1_1 | five_prime_UTR | 45231743 | 45231826 | 45231743 | ID=Msa0023680-mRNA-1:five_prime_utr;Parent=Msa0023680-mRNA-1 |
| chr1_1 | CDS | 45231827 | 45232156 | 45231827 | ID=Msa0023680-mRNA-1:cds;Parent=Msa0023680-mRNA-1 |
| chr1_1 | CDS | 45232250 | 45232408 | 45232250 | ID=Msa0023680-mRNA-1:cds;Parent=Msa0023680-mRNA-1 |
| chr1_1 | CDS | 45233064 | 45233747 | 45233064 | ID=Msa0023680-mRNA-1:cds;Parent=Msa0023680-mRNA-1 |
| chr1_1 | CDS | 45234270 | 45235358 | 45234270 | ID=Msa0023680-mRNA-1:cds;Parent=Msa0023680-mRNA-1 |
| chr1_1 | three_prime_UTR | 45235359 | 45235745 | 45235359 | ID=Msa0023680-mRNA-1:three_prime_utr;Parent=Msa0023680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
