AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0162480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162480 MtrunA17_Chr1g0176961 97.344 753 20 0 1 753 1 753 0.0 1511
Msa0162480 MtrunA17_Chr7g0267631 58.739 761 265 17 1 746 1 727 0.0 807
Msa0162480 MtrunA17_Chr3g0137731 50.962 312 114 5 419 728 323 597 1.87e-93 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162480 AT3G11760.1 58.223 754 230 18 1 729 1 694 0.0 794
Msa0162480 AT5G04860.1 46.020 804 330 21 1 749 1 755 0.0 608
Msa0162480 AT5G04860.2 47.531 648 261 17 137 749 1 604 2.15e-172 509
Msa0162480 AT2G10560.1 47.970 271 107 6 493 749 1 251 4.14e-76 247
Msa0162480 AT2G25460.2 43.396 318 124 4 419 734 282 545 4.18e-75 253
Msa0162480 AT2G25460.1 52.448 143 62 2 419 560 282 419 2.82e-33 133

Find 201 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATCAAACTGGGACTTTA+TGG 0.102736 1_4:+39459433 None:intergenic
AAGAATCGGCTTCAACTTTA+AGG 0.138463 1_4:+39459099 None:intergenic
AAGGGCTCTCCTTTAGATTT+AGG 0.181325 1_4:+39460313 None:intergenic
GTTCCTGAAAAGTCCTTTAT+AGG 0.194840 1_4:-39459284 Msa0162480:CDS
ACACATAATCGTACTGATTA+AGG 0.251417 1_4:-39458599 Msa0162480:exon
GTTACTTGTGGAGTCCTTTC+CGG 0.255066 1_4:+39459169 None:intergenic
ACCACAGGAATCTTGTTCTT+TGG 0.269464 1_4:+39461685 None:intergenic
CTTCCCTCATCCATTCCTTC+TGG 0.274855 1_4:+39459251 None:intergenic
TCTGCTTGTAATTCTCTAAT+AGG 0.276013 1_4:+39458756 None:intergenic
ACTTCGAATTTACGGGAAAT+TGG 0.280810 1_4:+39462084 None:intergenic
TCTGATGAATCTATTTCATT+TGG 0.287396 1_4:-39460226 Msa0162480:CDS
CCATGTCTTTCGATAACATT+TGG 0.288111 1_4:-39459208 Msa0162480:CDS
TCATCTGAGCTCAAAACTTT+TGG 0.290865 1_4:-39458403 Msa0162480:three_prime_UTR
CTGATGAATCTATTTCATTT+GGG 0.291378 1_4:-39460225 Msa0162480:CDS
CGAACATCGGTATCTGAGTT+TGG 0.292405 1_4:-39459647 Msa0162480:CDS
GCATTAGGTCGCGGTTGTTT+TGG 0.300495 1_4:+39459456 None:intergenic
TAACATTAAGTTGTATGAAT+TGG 0.316119 1_4:-39458376 Msa0162480:three_prime_UTR
AGCATTCCACTTACAATTCC+TGG 0.318693 1_4:-39461598 Msa0162480:CDS
CCACTATCAAAGCTGGTCTT+AGG 0.321310 1_4:-39460765 Msa0162480:CDS
GAAACAATAGAATCCTCTTT+TGG 0.324321 1_4:+39460415 None:intergenic
CTTTCTCTGACTCTCCTGAT+TGG 0.326671 1_4:+39460797 None:intergenic
TGATCTAGAAACAGTTGTTC+AGG 0.341468 1_4:-39459330 Msa0162480:CDS
ATCGTTCAGCTACGGGAAAC+TGG 0.345865 1_4:-39460542 Msa0162480:CDS
CATAAAGCTGAGGACGATTC+AGG 0.349125 1_4:-39459677 Msa0162480:CDS
GAAGTTTGACTTCGAATTTA+CGG 0.350744 1_4:+39462076 None:intergenic
CTCGAATTAAGCTATCAAAC+TGG 0.359785 1_4:+39459423 None:intergenic
GAACATCGGTATCTGAGTTT+GGG 0.366778 1_4:-39459646 Msa0162480:CDS
AAGAGAATGGGTTTCATCCT+TGG 0.373799 1_4:-39461840 Msa0162480:CDS
CTTTCTGCTAATAAAGAGAA+TGG 0.373998 1_4:-39461853 Msa0162480:CDS
TACTGCATCATTGACACTCT+TGG 0.376702 1_4:-39459077 Msa0162480:CDS
GAATCAGAGTGCAAACAAAA+AGG 0.381089 1_4:+39458328 None:intergenic
TGACTCTCCTGATTGGTTCA+AGG 0.386234 1_4:+39460804 None:intergenic
GAAGGGTGATGACGAGGATT+GGG 0.388790 1_4:-39460476 Msa0162480:CDS
CAACTTTAAGGATGAAGAAA+TGG 0.389682 1_4:+39459111 None:intergenic
ACTGGGACTTTATGGGCATT+AGG 0.391468 1_4:+39459441 None:intergenic
CTATCAAACTGGGACTTTAT+GGG 0.392417 1_4:+39459434 None:intergenic
AAGATTCCTGTGGTTGGAAC+AGG 0.393992 1_4:-39461676 Msa0162480:CDS
TCTAGATCAAAATGTTTGTC+GGG 0.400167 1_4:+39459344 None:intergenic
CTTGAACTTTGCGCTACATA+AGG 0.400579 1_4:+39460382 None:intergenic
TTGTTGCTGTAATTGCTGAT+TGG 0.402500 1_4:-39459481 Msa0162480:CDS
AAGTTTGACTTCGAATTTAC+GGG 0.405395 1_4:+39462077 None:intergenic
TTGAAGTTAAATTTAACAAA+AGG 0.407650 1_4:-39458521 Msa0162480:three_prime_UTR
CATGTCTTTCGATAACATTT+GGG 0.410509 1_4:-39459207 Msa0162480:CDS
TGGATGAAAGAAACCTATAA+AGG 0.410749 1_4:+39459271 None:intergenic
GAAAGAAGGAACCTTAACTA+TGG 0.412299 1_4:+39462209 None:intergenic
TGAAGGGTGATGACGAGGAT+TGG 0.414690 1_4:-39460477 Msa0162480:CDS
CAGCGCAGTGAACGTGCAGC+AGG 0.419816 1_4:-39459524 Msa0162480:CDS
CGTTGGAAGTTTGCCAAAAG+AGG 0.420162 1_4:-39460428 Msa0162480:CDS
CCTAAGACCAGCTTTGATAG+TGG 0.423378 1_4:+39460765 None:intergenic
CAACTTTGCGGTGGGCAGTT+GGG 0.429654 1_4:-39459618 Msa0162480:CDS
TTCTAGATCAAAATGTTTGT+CGG 0.433819 1_4:+39459343 None:intergenic
GCAGATATCAATCAGCTTAG+TGG 0.435759 1_4:-39460890 Msa0162480:intron
CATTCGCCGTTGAAATTCGT+TGG 0.436958 1_4:-39462008 Msa0162480:CDS
TATGTGAAAACCAGACATAT+AGG 0.438554 1_4:-39459376 Msa0162480:CDS
CGAATTTACGGGAAATTGGT+GGG 0.441264 1_4:+39462088 None:intergenic
TGGTTCAAGGGTGATGCAAC+AGG 0.445371 1_4:+39460817 None:intergenic
CAAGACGCAGCTTATTGCCT+TGG 0.445383 1_4:-39460363 Msa0162480:CDS
ATGTGAAAACCAGACATATA+GGG 0.445666 1_4:-39459375 Msa0162480:CDS
TACTGGCGAGGCTCATCCTA+AGG 0.445981 1_4:-39461929 Msa0162480:CDS
TCAAGAGAGTCAGAGTCAAA+AGG 0.446923 1_4:+39460625 None:intergenic
AGAGAATGGGTTTCATCCTT+GGG 0.450217 1_4:-39461839 Msa0162480:CDS
CCCTTGTTGAAGAAGGCATA+TGG 0.450589 1_4:-39460295 Msa0162480:CDS
TTGGAGTCTGGTGCTGAGAC+AGG 0.452085 1_4:-39458873 Msa0162480:CDS
AATGATAAGGAGTTGGAGTC+TGG 0.455949 1_4:-39458885 Msa0162480:CDS
GCATCACCCTTGAACCAATC+AGG 0.458879 1_4:-39460811 Msa0162480:CDS
TTCAGATCTCCTAAATCTAA+AGG 0.460780 1_4:-39460322 Msa0162480:CDS
TTAACTATGGATCTTACAAA+AGG 0.461426 1_4:+39462222 None:intergenic
GACTCTCCTGATTGGTTCAA+GGG 0.464260 1_4:+39460805 None:intergenic
TTTCTGCTAATAAAGAGAAT+GGG 0.466268 1_4:-39461852 Msa0162480:CDS
CAAGAGAGTCAGAGTCAAAA+GGG 0.467406 1_4:+39460626 None:intergenic
CTTCCCTCTTCCTCACGGCT+CGG 0.468647 1_4:+39460694 None:intergenic
TGCGGAAATCGTTCAGCTAC+GGG 0.469599 1_4:-39460549 Msa0162480:CDS
AGGATGATTTGAACTGTTGA+TGG 0.470966 1_4:-39458498 Msa0162480:three_prime_UTR
GACGCAGCTTATTGCCTTGG+AGG 0.472267 1_4:-39460360 Msa0162480:CDS
CCATATGCCTTCTTCAACAA+GGG 0.473088 1_4:+39460295 None:intergenic
GAAACCGAGCCGTGAGGAAG+AGG 0.479734 1_4:-39460698 Msa0162480:CDS
ACAACTTTGCGGTGGGCAGT+TGG 0.479833 1_4:-39459619 Msa0162480:CDS
GTCAATGATGCAGTAAGAAT+CGG 0.484330 1_4:+39459085 None:intergenic
TTTCTTTCATCCAGAAGGAA+TGG 0.487919 1_4:-39459261 Msa0162480:CDS
AAGAAGGCATATGGAGAAGA+AGG 0.488958 1_4:-39460286 Msa0162480:CDS
GTTTGGGGACGACAACTTTG+CGG 0.490682 1_4:-39459630 Msa0162480:CDS
TCTGACGATTGAGTGGCATC+TGG 0.491709 1_4:+39458981 None:intergenic
GGAATCGCTCCCTATATGTC+TGG 0.491997 1_4:+39459366 None:intergenic
GGAAGAAGAAGATGATGAGA+AGG 0.496097 1_4:+39462184 None:intergenic
ACCATGGTAACGCGTATTGT+TGG 0.500204 1_4:+39462141 None:intergenic
TTGTATCAACAAGGAAATCA+AGG 0.502701 1_4:-39460720 Msa0162480:CDS
ATGATGAGAAGGAAGAAAGA+AGG 0.503045 1_4:+39462195 None:intergenic
CCTCACTTCCCTCTTCCTCA+CGG 0.504065 1_4:+39460689 None:intergenic
TCGAATTTACGGGAAATTGG+TGG 0.505563 1_4:+39462087 None:intergenic
CTTCTCATCAAAACTCTCTC+CGG 0.505930 1_4:-39462057 Msa0162480:CDS
AACTAAGGTTGTGTCTGTCT+AGG 0.509674 1_4:-39458461 Msa0162480:three_prime_UTR
AAGTTAAATTTAACAAAAGG+AGG 0.512919 1_4:-39458518 Msa0162480:three_prime_UTR
GCCGTTGAAATTCGTTGGAA+AGG 0.514785 1_4:-39462003 Msa0162480:CDS
GCAAATCAATGATAAGGAGT+TGG 0.514949 1_4:-39458892 Msa0162480:CDS
TGCAACGGTTTGTTGTTCAC+CGG 0.516703 1_4:+39458947 None:intergenic
AAACTGGCCTTTGCAAATGC+TGG 0.517864 1_4:-39460526 Msa0162480:CDS
TTCTCATTCAGAAGAGGTAA+AGG 0.517877 1_4:-39460584 Msa0162480:CDS
TTACAAGCAGATGTGAAGAA+AGG 0.518971 1_4:-39458744 Msa0162480:CDS
TTGCTCTTAGTTCGCTTCGT+CGG 0.521079 1_4:-39461972 Msa0162480:CDS
TGCATCTGTTGTTGATCAGA+AGG 0.522342 1_4:-39461632 Msa0162480:CDS
TGATGTAGGGTTTGAATCAG+AGG 0.524447 1_4:-39461708 Msa0162480:intron
GGTTCAGCAAATCAATGATA+AGG 0.524830 1_4:-39458898 Msa0162480:CDS
ATAGGTTTCTTTCATCCAGA+AGG 0.525209 1_4:-39459266 Msa0162480:CDS
AAACCGAGCCGTGAGGAAGA+GGG 0.527016 1_4:-39460697 Msa0162480:CDS
AGATGATGAAATGGCGTCCA+TGG 0.533719 1_4:-39462113 Msa0162480:CDS
TGATGAATCTATTTCATTTG+GGG 0.533930 1_4:-39460224 Msa0162480:intron
CCGTGAGGAAGAGGGAAGTG+AGG 0.535601 1_4:-39460689 Msa0162480:CDS
AGGAGAGCCCTTGTTGAAGA+AGG 0.536446 1_4:-39460302 Msa0162480:CDS
ACCTTTCCAACGAATTTCAA+CGG 0.536856 1_4:+39462002 None:intergenic
GTCTTGTGATGTTGTTCCTG+TGG 0.538631 1_4:-39458655 Msa0162480:CDS
GTGAGGGAAATTACTCTGGC+AGG 0.538852 1_4:-39460672 Msa0162480:CDS
TTCACTGCGCTGATCAATTG+AGG 0.539569 1_4:+39459535 None:intergenic
TTTGATAGCTTAATTCGAGA+TGG 0.542877 1_4:-39459419 Msa0162480:CDS
CCGAGGTTCATCGTTACTTG+TGG 0.543988 1_4:+39459157 None:intergenic
AAGAACAAGATTCCTGTGGT+TGG 0.544870 1_4:-39461682 Msa0162480:CDS
TCGTCAGACGAAAACACAAC+CGG 0.545059 1_4:-39458966 Msa0162480:CDS
TCCATATGCCTTCTTCAACA+AGG 0.550604 1_4:+39460294 None:intergenic
TTCGAGATGGCTCATTAGAG+TGG 0.552263 1_4:-39459406 Msa0162480:CDS
ACTAAGGTTGTGTCTGTCTA+GGG 0.554453 1_4:-39458460 Msa0162480:three_prime_UTR
GCGCAGTGAACGTGCAGCAG+GGG 0.555807 1_4:-39459522 Msa0162480:CDS
GCATATATCTTGAAATTCGA+TGG 0.555896 1_4:-39459026 Msa0162480:CDS
TGGGATGAGATTAGTAATGC+CGG 0.556246 1_4:-39459188 Msa0162480:CDS
TACTCTGGCAGGAGTGAGGA+TGG 0.557847 1_4:-39460661 Msa0162480:CDS
TGGTTGTTAAGATGATGAAA+TGG 0.558322 1_4:-39462122 Msa0162480:CDS
GTGCGGAAATCGTTCAGCTA+CGG 0.560018 1_4:-39460550 Msa0162480:CDS
TCATCCAGAAGGAATGGATG+AGG 0.560528 1_4:-39459255 Msa0162480:CDS
GGAAGTGAGGGAAATTACTC+TGG 0.560922 1_4:-39460676 Msa0162480:CDS
GCTGAACGATTTCCGCACAC+TGG 0.561277 1_4:+39460555 None:intergenic
ACTTTATGGGCATTAGGTCG+CGG 0.562038 1_4:+39459447 None:intergenic
CTCAACTTTCTCTTCCTCCA+AGG 0.562179 1_4:+39460346 None:intergenic
AGCGAACTAAGAGCAAGTTT+AGG 0.563370 1_4:+39461979 None:intergenic
GAATTTACGGGAAATTGGTG+GGG 0.563517 1_4:+39462089 None:intergenic
CTGGCCTTTGCAAATGCTGG+TGG 0.563905 1_4:-39460523 Msa0162480:CDS
GAACCACCAGGAATTGTAAG+TGG 0.564705 1_4:+39461592 None:intergenic
ATTTGTAGTCTATGATGAAG+TGG 0.567209 1_4:+39458705 None:intergenic
AATTTACGGGAAATTGGTGG+GGG 0.568449 1_4:+39462090 None:intergenic
GAAGTTTCATGTGGCCATCA+CGG 0.569157 1_4:+39459576 None:intergenic
TCAACGGCGAATGTATTCTC+CGG 0.570730 1_4:+39462018 None:intergenic
GTGGTTGAGAAAAGAGACAA+AGG 0.574718 1_4:+39462163 None:intergenic
GAGGTTTCCACTATCAAAGC+TGG 0.575099 1_4:-39460772 Msa0162480:CDS
ACAGATGCTTCTTCAGCCAC+AGG 0.578140 1_4:+39458639 None:intergenic
AAGGCATATGGAGAAGAAGG+TGG 0.578876 1_4:-39460283 Msa0162480:CDS
CGTGAGGAAGAGGGAAGTGA+GGG 0.581230 1_4:-39460688 Msa0162480:CDS
ACTGGCGAGGCTCATCCTAA+GGG 0.582324 1_4:-39461928 Msa0162480:CDS
AAAGAAGTAATGAGCCGTGA+TGG 0.583057 1_4:-39459590 Msa0162480:CDS
CTATTCGAGCATGAGAGTGA+AGG 0.585649 1_4:-39460494 Msa0162480:CDS
GGGGACGACAACTTTGCGGT+GGG 0.588721 1_4:-39459626 Msa0162480:CDS
GTAAATGAGAGAGTGAACTA+AGG 0.588850 1_4:-39458476 Msa0162480:three_prime_UTR
AATGAACCTGTTCCAACCAC+AGG 0.591199 1_4:+39461670 None:intergenic
GGGTCAACAGCAGAACCACC+AGG 0.591552 1_4:+39461580 None:intergenic
CGGTGGAATCGATCTCTCGC+CGG 0.594401 1_4:-39462037 Msa0162480:CDS
TGAGATTAGTAATGCCGGAA+AGG 0.595760 1_4:-39459183 Msa0162480:CDS
ATGTATTAGAGTACAATGAC+AGG 0.595845 1_4:-39458923 Msa0162480:CDS
ATGGTAACGCGTATTGTTGG+TGG 0.596456 1_4:+39462144 None:intergenic
AGCGCAGTGAACGTGCAGCA+GGG 0.596611 1_4:-39459523 Msa0162480:CDS
TCGAATTAAGCTATCAAACT+GGG 0.597882 1_4:+39459424 None:intergenic
ACCAACAATACGCGTTACCA+TGG 0.598887 1_4:-39462142 Msa0162480:exon
GTACTCTAATACATCTGCAA+CGG 0.605082 1_4:+39458932 None:intergenic
ATTAGAGTACAATGACAGGC+AGG 0.605990 1_4:-39458919 Msa0162480:CDS
TATTCGAGCATGAGAGTGAA+GGG 0.606142 1_4:-39460493 Msa0162480:CDS
TCAGTCGAAAAGTGAGCGTG+AGG 0.606612 1_4:-39458847 Msa0162480:CDS
TGGGGACGACAACTTTGCGG+TGG 0.607170 1_4:-39459627 Msa0162480:CDS
CAGCTTAGTGGAGCTAAGAG+TGG 0.608548 1_4:-39460878 Msa0162480:CDS
AACATCGGTATCTGAGTTTG+GGG 0.609041 1_4:-39459645 Msa0162480:CDS
ATTCATCAGAGCTAAGCTGC+CGG 0.610097 1_4:+39460239 None:intergenic
TTTCATCATCTTAACAACCA+TGG 0.613076 1_4:+39462125 None:intergenic
CTAGATCAAAATGTTTGTCG+GGG 0.614137 1_4:+39459345 None:intergenic
CTTGAAATTCGATGGCAACA+CGG 0.615137 1_4:-39459018 Msa0162480:CDS
AAATTACTCTGGCAGGAGTG+AGG 0.615141 1_4:-39460665 Msa0162480:CDS
TGACTGAGTTTGTATCAACA+AGG 0.618765 1_4:-39460729 Msa0162480:CDS
TCATTGACACTCTTGGAGAG+AGG 0.619433 1_4:-39459070 Msa0162480:CDS
ACGGTGAAAGCGATCTCCCA+AGG 0.619674 1_4:+39461823 None:intergenic
CGTACTGATTAAGGAAAGTG+CGG 0.624586 1_4:-39458590 Msa0162480:three_prime_UTR
CTCATCAAAACTCTCTCCGG+TGG 0.625057 1_4:-39462054 Msa0162480:CDS
CAGAAGGAATGGATGAGGGA+AGG 0.626120 1_4:-39459250 Msa0162480:CDS
CGGCGAGAGATCGATTCCAC+CGG 0.626152 1_4:+39462038 None:intergenic
TCATTCAGAAGAGGTAAAGG+AGG 0.629440 1_4:-39460581 Msa0162480:CDS
CATCCAGAAGGAATGGATGA+GGG 0.630978 1_4:-39459254 Msa0162480:CDS
GAGAGTGAAGGGTGATGACG+AGG 0.633012 1_4:-39460482 Msa0162480:CDS
CATACAGTGAGTGAAAGAGA+AGG 0.634779 1_4:+39461559 None:intergenic
AGGGGATTCTCATTCAGAAG+AGG 0.637034 1_4:-39460590 Msa0162480:CDS
ATACAGTGAGTGAAAGAGAA+GGG 0.637371 1_4:+39461560 None:intergenic
CCAAATGTTATCGAAAGACA+TGG 0.641206 1_4:+39459208 None:intergenic
AAGTGAGCGTGAGGAAGACG+AGG 0.642594 1_4:-39458838 Msa0162480:CDS
AGTAATCACAAATCAGACGT+TGG 0.645175 1_4:-39460445 Msa0162480:CDS
TGATCCACCAGCATTTGCAA+AGG 0.646546 1_4:+39460519 None:intergenic
CAGAGGGAAAGAATCATGCA+AGG 0.651300 1_4:-39458808 Msa0162480:CDS
AGCATCTGTCACAGTAACTG+AGG 0.656388 1_4:-39458625 Msa0162480:CDS
TAGTTCGCTTCGTCGGAACG+CGG 0.657900 1_4:-39461965 Msa0162480:CDS
TTTCAGGAACAACGGAAAGG+GGG 0.661017 1_4:+39459297 None:intergenic
ATTCCACTTACAATTCCTGG+TGG 0.678173 1_4:-39461595 Msa0162480:CDS
CTTGGAGAGAGGCTTTACGA+AGG 0.681723 1_4:-39459059 Msa0162480:CDS
TTGCGCTACATAAGGCTCAG+AGG 0.682948 1_4:+39460390 None:intergenic
TTCAGGTGCAAATCGAACAT+CGG 0.687805 1_4:-39459660 Msa0162480:CDS
CCACAAGTAACGATGAACCT+CGG 0.694167 1_4:-39459157 Msa0162480:CDS
GCCAAAGAACAAGATTCCTG+TGG 0.698542 1_4:-39461686 Msa0162480:CDS
TAAAGGAGGATTCCAGTGTG+CGG 0.701947 1_4:-39460567 Msa0162480:CDS
ATGACAGTCACATAAAGCTG+AGG 0.711509 1_4:-39459687 Msa0162480:intron
AGGAGAGTCAGAGAAAGACG+AGG 0.713897 1_4:-39460791 Msa0162480:CDS
ATCAAGGAAACCGAGCCGTG+AGG 0.718483 1_4:-39460704 Msa0162480:CDS
CTTGTGTCTGAAGTTTCATG+TGG 0.718633 1_4:+39459567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATCCTTATTATTTTT+GGG + chr1_4:39459078-39459097 None:intergenic 10.0%
!!! TATAAAATCCTTATTATTTT+TGG + chr1_4:39459079-39459098 None:intergenic 10.0%
!! TAAGAAAAATACATTGAAAA+CGG + chr1_4:39458533-39458552 None:intergenic 15.0%
!! AAAATTGATGAGATAAAAAA+AGG + chr1_4:39458843-39458862 None:intergenic 15.0%
!! TTGAAGTTAAATTTAACAAA+AGG - chr1_4:39461813-39461832 Msa0162480:intron 15.0%
!! ACAATGAAATTGAAGAAAAA+GGG + chr1_4:39458558-39458577 None:intergenic 20.0%
!! TACAATGAAATTGAAGAAAA+AGG + chr1_4:39458559-39458578 None:intergenic 20.0%
!! AATAAGTCAAAAAGAAATTG+TGG + chr1_4:39458816-39458835 None:intergenic 20.0%
!!! ATAAGTATTGTATATGAAAC+TGG - chr1_4:39458969-39458988 Msa0162480:CDS 20.0%
!!! ATGAATTTTCATATACTTCA+GGG + chr1_4:39459005-39459024 None:intergenic 20.0%
!!! AATGAATTTTCATATACTTC+AGG + chr1_4:39459006-39459025 None:intergenic 20.0%
!! TCTATTCAATTAAGATGTTT+GGG + chr1_4:39459037-39459056 None:intergenic 20.0%
!!! CACTTTTACAAAATCAATTT+TGG + chr1_4:39459171-39459190 None:intergenic 20.0%
!! AAGAAGTTTCAAAAAAGATT+AGG + chr1_4:39460574-39460593 None:intergenic 20.0%
!!! AATCTTTTTTGAAACTTCTT+TGG - chr1_4:39460574-39460593 Msa0162480:CDS 20.0%
!! AAGTTAAATTTAACAAAAGG+AGG - chr1_4:39461816-39461835 Msa0162480:CDS 20.0%
!!! TAACATTAAGTTGTATGAAT+TGG - chr1_4:39461958-39461977 Msa0162480:CDS 20.0%
!!! GTGTTTTTAAAAGAAAATTG+AGG - chr1_4:39462178-39462197 Msa0162480:five_prime_UTR 20.0%
!!! TTTTTAAAAGAAAATTGAGG+AGG - chr1_4:39462181-39462200 Msa0162480:five_prime_UTR 20.0%
!!! TTTTAAAAGAAAATTGAGGA+GGG - chr1_4:39462182-39462201 Msa0162480:five_prime_UTR 20.0%
! TTAACTATGGATCTTACAAA+AGG + chr1_4:39458115-39458134 None:intergenic 25.0%
!! TTTTGTAAGATCCATAGTTA+AGG - chr1_4:39458114-39458133 Msa0162480:intron 25.0%
! TTTCTGCTAATAAAGAGAAT+GGG - chr1_4:39458482-39458501 Msa0162480:three_prime_UTR 25.0%
!!! AAATTTGGGATTTTTGATGT+AGG - chr1_4:39458612-39458631 Msa0162480:exon 25.0%
!!! AATTTGGGATTTTTGATGTA+GGG - chr1_4:39458613-39458632 Msa0162480:exon 25.0%
!!! GTTCAATTGAAATTTGTTGT+TGG - chr1_4:39458872-39458891 Msa0162480:CDS 25.0%
!! TACTTTATGGACTAAATTGA+TGG + chr1_4:39458903-39458922 None:intergenic 25.0%
! GAGAAAATTGGTATACTTTA+TGG + chr1_4:39458916-39458935 None:intergenic 25.0%
! GATTAAATTCGAGAGAAAAT+TGG + chr1_4:39458928-39458947 None:intergenic 25.0%
! GTCTATTCAATTAAGATGTT+TGG + chr1_4:39459038-39459057 None:intergenic 25.0%
! GAATAGTCCCAAAAATAATA+AGG - chr1_4:39459068-39459087 Msa0162480:CDS 25.0%
!!! TACAAAATCAATTTTGGTCA+AGG + chr1_4:39459165-39459184 None:intergenic 25.0%
! TCTACTTGAAGTTTAGATAT+TGG + chr1_4:39459276-39459295 None:intergenic 25.0%
! TCTGATGAATCTATTTCATT+TGG - chr1_4:39460108-39460127 Msa0162480:intron 25.0%
! CTGATGAATCTATTTCATTT+GGG - chr1_4:39460109-39460128 Msa0162480:intron 25.0%
! TGATGAATCTATTTCATTTG+GGG - chr1_4:39460110-39460129 Msa0162480:intron 25.0%
! TATCCTTAAAATTCATCTCA+AGG - chr1_4:39460203-39460222 Msa0162480:intron 25.0%
! ATTTAGATAAACTTGTCAAG+AGG + chr1_4:39460535-39460554 None:intergenic 25.0%
! AAGTTTCAAAAAAGATTAGG+AGG + chr1_4:39460571-39460590 None:intergenic 25.0%
! TGATAAGCTAATTAACAACA+GGG + chr1_4:39460607-39460626 None:intergenic 25.0%
! TTCTAGATCAAAATGTTTGT+CGG + chr1_4:39460994-39461013 None:intergenic 25.0%
! TTTAAAAGAAAATTGAGGAG+GGG - chr1_4:39462183-39462202 Msa0162480:five_prime_UTR 25.0%
TTTCATCATCTTAACAACCA+TGG + chr1_4:39458212-39458231 None:intergenic 30.0%
TGGTTGTTAAGATGATGAAA+TGG - chr1_4:39458212-39458231 Msa0162480:intron 30.0%
! AAGTTTGACTTCGAATTTAC+GGG + chr1_4:39458260-39458279 None:intergenic 30.0%
! GAAGTTTGACTTCGAATTTA+CGG + chr1_4:39458261-39458280 None:intergenic 30.0%
CTTTCTGCTAATAAAGAGAA+TGG - chr1_4:39458481-39458500 Msa0162480:three_prime_UTR 30.0%
TTAAGGACTAAGCATATGTT+TGG - chr1_4:39459134-39459153 Msa0162480:CDS 30.0%
AGAATTGATTGTGACATGTT+TGG + chr1_4:39459338-39459357 None:intergenic 30.0%
!! TTCTACATCTCTAGAATCAA+TGG - chr1_4:39459354-39459373 Msa0162480:CDS 30.0%
TTGTATCAACAAGGAAATCA+AGG - chr1_4:39459614-39459633 Msa0162480:CDS 30.0%
! GAAACAATAGAATCCTCTTT+TGG + chr1_4:39459922-39459941 None:intergenic 30.0%
TTCAGATCTCCTAAATCTAA+AGG - chr1_4:39460012-39460031 Msa0162480:intron 30.0%
!!! ATGATATTGATTTTGATCGC+CGG - chr1_4:39460076-39460095 Msa0162480:intron 30.0%
GATGACGAAAAACAATGAAA+AGG + chr1_4:39460148-39460167 None:intergenic 30.0%
TTTCGTCATCTACATGTTTA+TGG - chr1_4:39460158-39460177 Msa0162480:intron 30.0%
TGTTTATGGCACAAGAAAAT+AGG - chr1_4:39460172-39460191 Msa0162480:intron 30.0%
GTTTATGGCACAAGAAAATA+GGG - chr1_4:39460173-39460192 Msa0162480:intron 30.0%
! TGACCTTGAGATGAATTTTA+AGG + chr1_4:39460209-39460228 None:intergenic 30.0%
TTAATGTATGAACTCTTCTG+GGG + chr1_4:39460343-39460362 None:intergenic 30.0%
CTTAATGTATGAACTCTTCT+GGG + chr1_4:39460344-39460363 None:intergenic 30.0%
ACTTAATGTATGAACTCTTC+TGG + chr1_4:39460345-39460364 None:intergenic 30.0%
TATTTAGATCATTCCCATTG+AGG + chr1_4:39460496-39460515 None:intergenic 30.0%
CTGATAAGCTAATTAACAAC+AGG + chr1_4:39460608-39460627 None:intergenic 30.0%
TCGAATTAAGCTATCAAACT+GGG + chr1_4:39460913-39460932 None:intergenic 30.0%
! TTTGATAGCTTAATTCGAGA+TGG - chr1_4:39460915-39460934 Msa0162480:intron 30.0%
TATGTGAAAACCAGACATAT+AGG - chr1_4:39460958-39460977 Msa0162480:intron 30.0%
ATGTGAAAACCAGACATATA+GGG - chr1_4:39460959-39460978 Msa0162480:intron 30.0%
TCTAGATCAAAATGTTTGTC+GGG + chr1_4:39460993-39461012 None:intergenic 30.0%
! AAACCTATAAAGGACTTTTC+AGG + chr1_4:39461056-39461075 None:intergenic 30.0%
TGGATGAAAGAAACCTATAA+AGG + chr1_4:39461066-39461085 None:intergenic 30.0%
CATGTCTTTCGATAACATTT+GGG - chr1_4:39461127-39461146 Msa0162480:intron 30.0%
CAACTGATAATAAAAATCCG+AGG + chr1_4:39461197-39461216 None:intergenic 30.0%
! CTCGGATTTTTATTATCAGT+TGG - chr1_4:39461195-39461214 Msa0162480:intron 30.0%
! CAACTTTAAGGATGAAGAAA+TGG + chr1_4:39461226-39461245 None:intergenic 30.0%
GCATATATCTTGAAATTCGA+TGG - chr1_4:39461308-39461327 Msa0162480:intron 30.0%
ATGTATTAGAGTACAATGAC+AGG - chr1_4:39461411-39461430 Msa0162480:intron 30.0%
TCTGCTTGTAATTCTCTAAT+AGG + chr1_4:39461581-39461600 None:intergenic 30.0%
ATTTGTAGTCTATGATGAAG+TGG + chr1_4:39461632-39461651 None:intergenic 30.0%
!! ACACATAATCGTACTGATTA+AGG - chr1_4:39461735-39461754 Msa0162480:intron 30.0%
GAAAGAAGGAACCTTAACTA+TGG + chr1_4:39458128-39458147 None:intergenic 35.0%
ATGATGAGAAGGAAGAAAGA+AGG + chr1_4:39458142-39458161 None:intergenic 35.0%
ACTTCGAATTTACGGGAAAT+TGG + chr1_4:39458253-39458272 None:intergenic 35.0%
ACCTTTCCAACGAATTTCAA+CGG + chr1_4:39458335-39458354 None:intergenic 35.0%
!!! ATGAAAACGATGTCGTTTTG+TGG - chr1_4:39458431-39458450 Msa0162480:three_prime_UTR 35.0%
!!! TGAAAACGATGTCGTTTTGT+GGG - chr1_4:39458432-39458451 Msa0162480:three_prime_UTR 35.0%
ATACAGTGAGTGAAAGAGAA+GGG + chr1_4:39458777-39458796 None:intergenic 35.0%
ACTTCAAGTAGAATCAGTTC+TGG - chr1_4:39459284-39459303 Msa0162480:CDS 35.0%
!! ACATCTCTAGAATCAATGGA+TGG - chr1_4:39459358-39459377 Msa0162480:CDS 35.0%
TGACTGAGTTTGTATCAACA+AGG - chr1_4:39459605-39459624 Msa0162480:CDS 35.0%
!! TGACTCTCTTGATGATTTTG+AGG - chr1_4:39459720-39459739 Msa0162480:intron 35.0%
!! TCTCTTGATGATTTTGAGGA+AGG - chr1_4:39459724-39459743 Msa0162480:intron 35.0%
!! CTCTTGATGATTTTGAGGAA+GGG - chr1_4:39459725-39459744 Msa0162480:intron 35.0%
!! TCTTGATGATTTTGAGGAAG+GGG - chr1_4:39459726-39459745 Msa0162480:intron 35.0%
TTCTCATTCAGAAGAGGTAA+AGG - chr1_4:39459750-39459769 Msa0162480:intron 35.0%
AGTAATCACAAATCAGACGT+TGG - chr1_4:39459889-39459908 Msa0162480:intron 35.0%
ATTGGACTCTAAACACGAAT+TGG + chr1_4:39460320-39460339 None:intergenic 35.0%
GAATATGTGCATGAGTACAA+AGG - chr1_4:39460374-39460393 Msa0162480:CDS 35.0%
ATGAGTACAAAGGCTTAGAT+TGG - chr1_4:39460384-39460403 Msa0162480:CDS 35.0%
TGAGTACAAAGGCTTAGATT+GGG - chr1_4:39460385-39460404 Msa0162480:CDS 35.0%
AAGGGACATCTTGAACTTAA+CGG + chr1_4:39460450-39460469 None:intergenic 35.0%
TGCTGAAAGAGAAGTAGAAA+GGG + chr1_4:39460468-39460487 None:intergenic 35.0%
TTGCTGAAAGAGAAGTAGAA+AGG + chr1_4:39460469-39460488 None:intergenic 35.0%
!! AACTTGTCAAGAGGTATCAA+TGG + chr1_4:39460526-39460545 None:intergenic 35.0%
TTGTTGCTGTAATTGCTGAT+TGG - chr1_4:39460853-39460872 Msa0162480:CDS 35.0%
CTATCAAACTGGGACTTTAT+GGG + chr1_4:39460903-39460922 None:intergenic 35.0%
CTCGAATTAAGCTATCAAAC+TGG + chr1_4:39460914-39460933 None:intergenic 35.0%
CTAGATCAAAATGTTTGTCG+GGG + chr1_4:39460992-39461011 None:intergenic 35.0%
TGATCTAGAAACAGTTGTTC+AGG - chr1_4:39461004-39461023 Msa0162480:intron 35.0%
!! AAAGGACTTTTCAGGAACAA+CGG + chr1_4:39461048-39461067 None:intergenic 35.0%
GTTCCTGAAAAGTCCTTTAT+AGG - chr1_4:39461050-39461069 Msa0162480:intron 35.0%
ATAGGTTTCTTTCATCCAGA+AGG - chr1_4:39461068-39461087 Msa0162480:intron 35.0%
TTTCTTTCATCCAGAAGGAA+TGG - chr1_4:39461073-39461092 Msa0162480:intron 35.0%
CCAAATGTTATCGAAAGACA+TGG + chr1_4:39461129-39461148 None:intergenic 35.0%
CCATGTCTTTCGATAACATT+TGG - chr1_4:39461126-39461145 Msa0162480:intron 35.0%
! AAGAATCGGCTTCAACTTTA+AGG + chr1_4:39461238-39461257 None:intergenic 35.0%
GTCAATGATGCAGTAAGAAT+CGG + chr1_4:39461252-39461271 None:intergenic 35.0%
GTACTCTAATACATCTGCAA+CGG + chr1_4:39461405-39461424 None:intergenic 35.0%
GGTTCAGCAAATCAATGATA+AGG - chr1_4:39461436-39461455 Msa0162480:intron 35.0%
GCAAATCAATGATAAGGAGT+TGG - chr1_4:39461442-39461461 Msa0162480:intron 35.0%
TTACAAGCAGATGTGAAGAA+AGG - chr1_4:39461590-39461609 Msa0162480:CDS 35.0%
AGGATGATTTGAACTGTTGA+TGG - chr1_4:39461836-39461855 Msa0162480:CDS 35.0%
GTAAATGAGAGAGTGAACTA+AGG - chr1_4:39461858-39461877 Msa0162480:CDS 35.0%
!!! AGTTTTGAGCTCAGATGAAA+AGG + chr1_4:39461929-39461948 None:intergenic 35.0%
! TCATCTGAGCTCAAAACTTT+TGG - chr1_4:39461931-39461950 Msa0162480:CDS 35.0%
GAATCAGAGTGCAAACAAAA+AGG + chr1_4:39462009-39462028 None:intergenic 35.0%
! GTCATGAGCTGTATTTTTCT+GGG + chr1_4:39462064-39462083 None:intergenic 35.0%
! TGTCATGAGCTGTATTTTTC+TGG + chr1_4:39462065-39462084 None:intergenic 35.0%
AGAAAAATACAGCTCATGAC+AGG - chr1_4:39462064-39462083 Msa0162480:CDS 35.0%
GGAAGAAGAAGATGATGAGA+AGG + chr1_4:39458153-39458172 None:intergenic 40.0%
GTGGTTGAGAAAAGAGACAA+AGG + chr1_4:39458174-39458193 None:intergenic 40.0%
AATTTACGGGAAATTGGTGG+GGG + chr1_4:39458247-39458266 None:intergenic 40.0%
GAATTTACGGGAAATTGGTG+GGG + chr1_4:39458248-39458267 None:intergenic 40.0%
CGAATTTACGGGAAATTGGT+GGG + chr1_4:39458249-39458268 None:intergenic 40.0%
TCGAATTTACGGGAAATTGG+TGG + chr1_4:39458250-39458269 None:intergenic 40.0%
CTTCTCATCAAAACTCTCTC+CGG - chr1_4:39458277-39458296 Msa0162480:three_prime_UTR 40.0%
AGCGAACTAAGAGCAAGTTT+AGG + chr1_4:39458358-39458377 None:intergenic 40.0%
! GCGGTTGTGAGAAATTTTAC+TGG - chr1_4:39458388-39458407 Msa0162480:three_prime_UTR 40.0%
! TGTGAGAAATTTTACTGGCG+AGG - chr1_4:39458393-39458412 Msa0162480:three_prime_UTR 40.0%
! ACATCGTTTTCATCTCCCTT+AGG + chr1_4:39458424-39458443 None:intergenic 40.0%
! AAGAGAATGGGTTTCATCCT+TGG - chr1_4:39458494-39458513 Msa0162480:three_prime_UTR 40.0%
! AGAGAATGGGTTTCATCCTT+GGG - chr1_4:39458495-39458514 Msa0162480:three_prime_UTR 40.0%
TGATGTAGGGTTTGAATCAG+AGG - chr1_4:39458626-39458645 Msa0162480:CDS 40.0%
ACCACAGGAATCTTGTTCTT+TGG + chr1_4:39458652-39458671 None:intergenic 40.0%
AAGAACAAGATTCCTGTGGT+TGG - chr1_4:39458652-39458671 Msa0162480:CDS 40.0%
TGCATCTGTTGTTGATCAGA+AGG - chr1_4:39458702-39458721 Msa0162480:CDS 40.0%
AGCATTCCACTTACAATTCC+TGG - chr1_4:39458736-39458755 Msa0162480:CDS 40.0%
ATTCCACTTACAATTCCTGG+TGG - chr1_4:39458739-39458758 Msa0162480:CDS 40.0%
CATACAGTGAGTGAAAGAGA+AGG + chr1_4:39458778-39458797 None:intergenic 40.0%
TATCTGCACACAATCAAGAG+CGG + chr1_4:39459431-39459450 None:intergenic 40.0%
GCAGATATCAATCAGCTTAG+TGG - chr1_4:39459444-39459463 Msa0162480:CDS 40.0%
CAAGAGAGTCAGAGTCAAAA+GGG + chr1_4:39459711-39459730 None:intergenic 40.0%
TCAAGAGAGTCAGAGTCAAA+AGG + chr1_4:39459712-39459731 None:intergenic 40.0%
TCATTCAGAAGAGGTAAAGG+AGG - chr1_4:39459753-39459772 Msa0162480:intron 40.0%
TATTCGAGCATGAGAGTGAA+GGG - chr1_4:39459841-39459860 Msa0162480:intron 40.0%
CTTGAACTTTGCGCTACATA+AGG + chr1_4:39459955-39459974 None:intergenic 40.0%
AAGGGCTCTCCTTTAGATTT+AGG + chr1_4:39460024-39460043 None:intergenic 40.0%
CCATATGCCTTCTTCAACAA+GGG + chr1_4:39460042-39460061 None:intergenic 40.0%
TCCATATGCCTTCTTCAACA+AGG + chr1_4:39460043-39460062 None:intergenic 40.0%
! AAGAAGGCATATGGAGAAGA+AGG - chr1_4:39460048-39460067 Msa0162480:intron 40.0%
ACATCTTGAACTTAACGGGA+AGG + chr1_4:39460445-39460464 None:intergenic 40.0%
AGGGACATCTTGAACTTAAC+GGG + chr1_4:39460449-39460468 None:intergenic 40.0%
TTTCAGCAACTCTCCTCAAT+GGG - chr1_4:39460480-39460499 Msa0162480:CDS 40.0%
ATGACAGTCACATAAAGCTG+AGG - chr1_4:39460647-39460666 Msa0162480:CDS 40.0%
TTCAGGTGCAAATCGAACAT+CGG - chr1_4:39460674-39460693 Msa0162480:CDS 40.0%
GAACATCGGTATCTGAGTTT+GGG - chr1_4:39460688-39460707 Msa0162480:CDS 40.0%
AACATCGGTATCTGAGTTTG+GGG - chr1_4:39460689-39460708 Msa0162480:CDS 40.0%
AAAGAAGTAATGAGCCGTGA+TGG - chr1_4:39460744-39460763 Msa0162480:CDS 40.0%
! CTTGTGTCTGAAGTTTCATG+TGG + chr1_4:39460770-39460789 None:intergenic 40.0%
GCTATCAAACTGGGACTTTA+TGG + chr1_4:39460904-39460923 None:intergenic 40.0%
!! TTTTCAGGAACAACGGAAAG+GGG + chr1_4:39461041-39461060 None:intergenic 40.0%
!! CTTTTCAGGAACAACGGAAA+GGG + chr1_4:39461042-39461061 None:intergenic 40.0%
!! ACTTTTCAGGAACAACGGAA+AGG + chr1_4:39461043-39461062 None:intergenic 40.0%
TGGGATGAGATTAGTAATGC+CGG - chr1_4:39461146-39461165 Msa0162480:intron 40.0%
TGAGATTAGTAATGCCGGAA+AGG - chr1_4:39461151-39461170 Msa0162480:intron 40.0%
TACTGCATCATTGACACTCT+TGG - chr1_4:39461257-39461276 Msa0162480:intron 40.0%
CTTGAAATTCGATGGCAACA+CGG - chr1_4:39461316-39461335 Msa0162480:intron 40.0%
ATTAGAGTACAATGACAGGC+AGG - chr1_4:39461415-39461434 Msa0162480:intron 40.0%
AATGATAAGGAGTTGGAGTC+TGG - chr1_4:39461449-39461468 Msa0162480:intron 40.0%
!! CGTACTGATTAAGGAAAGTG+CGG - chr1_4:39461744-39461763 Msa0162480:intron 40.0%
AACTAAGGTTGTGTCTGTCT+AGG - chr1_4:39461873-39461892 Msa0162480:CDS 40.0%
ACTAAGGTTGTGTCTGTCTA+GGG - chr1_4:39461874-39461893 Msa0162480:CDS 40.0%
! ATGAGCTGTATTTTTCTGGG+TGG + chr1_4:39462061-39462080 None:intergenic 40.0%
! ATGGTAACGCGTATTGTTGG+TGG + chr1_4:39458193-39458212 None:intergenic 45.0%
ACCAACAATACGCGTTACCA+TGG - chr1_4:39458192-39458211 Msa0162480:intron 45.0%
! ACCATGGTAACGCGTATTGT+TGG + chr1_4:39458196-39458215 None:intergenic 45.0%
AGATGATGAAATGGCGTCCA+TGG - chr1_4:39458221-39458240 Msa0162480:intron 45.0%
TCAACGGCGAATGTATTCTC+CGG + chr1_4:39458319-39458338 None:intergenic 45.0%
CATTCGCCGTTGAAATTCGT+TGG - chr1_4:39458326-39458345 Msa0162480:three_prime_UTR 45.0%
GCCGTTGAAATTCGTTGGAA+AGG - chr1_4:39458331-39458350 Msa0162480:three_prime_UTR 45.0%
TTGCTCTTAGTTCGCTTCGT+CGG - chr1_4:39458362-39458381 Msa0162480:three_prime_UTR 45.0%
GCCAAAGAACAAGATTCCTG+TGG - chr1_4:39458648-39458667 Msa0162480:CDS 45.0%
AAGATTCCTGTGGTTGGAAC+AGG - chr1_4:39458658-39458677 Msa0162480:CDS 45.0%
AATGAACCTGTTCCAACCAC+AGG + chr1_4:39458667-39458686 None:intergenic 45.0%
GAACCACCAGGAATTGTAAG+TGG + chr1_4:39458745-39458764 None:intergenic 45.0%
! GACTCTCCTGATTGGTTCAA+GGG + chr1_4:39459532-39459551 None:intergenic 45.0%
! TGACTCTCCTGATTGGTTCA+AGG + chr1_4:39459533-39459552 None:intergenic 45.0%
CTTTCTCTGACTCTCCTGAT+TGG + chr1_4:39459540-39459559 None:intergenic 45.0%
GAGGTTTCCACTATCAAAGC+TGG - chr1_4:39459562-39459581 Msa0162480:CDS 45.0%
! CCTAAGACCAGCTTTGATAG+TGG + chr1_4:39459572-39459591 None:intergenic 45.0%
!! CCACTATCAAAGCTGGTCTT+AGG - chr1_4:39459569-39459588 Msa0162480:CDS 45.0%
GGAAGTGAGGGAAATTACTC+TGG - chr1_4:39459658-39459677 Msa0162480:CDS 45.0%
AAATTACTCTGGCAGGAGTG+AGG - chr1_4:39459669-39459688 Msa0162480:CDS 45.0%
AGGGGATTCTCATTCAGAAG+AGG - chr1_4:39459744-39459763 Msa0162480:intron 45.0%
TAAAGGAGGATTCCAGTGTG+CGG - chr1_4:39459767-39459786 Msa0162480:intron 45.0%
!! AAACTGGCCTTTGCAAATGC+TGG - chr1_4:39459808-39459827 Msa0162480:intron 45.0%
TGATCCACCAGCATTTGCAA+AGG + chr1_4:39459818-39459837 None:intergenic 45.0%
CTATTCGAGCATGAGAGTGA+AGG - chr1_4:39459840-39459859 Msa0162480:intron 45.0%
CGTTGGAAGTTTGCCAAAAG+AGG - chr1_4:39459906-39459925 Msa0162480:intron 45.0%
CTCAACTTTCTCTTCCTCCA+AGG + chr1_4:39459991-39460010 None:intergenic 45.0%
! CCCTTGTTGAAGAAGGCATA+TGG - chr1_4:39460039-39460058 Msa0162480:intron 45.0%
AAGGCATATGGAGAAGAAGG+TGG - chr1_4:39460051-39460070 Msa0162480:intron 45.0%
ATTCATCAGAGCTAAGCTGC+CGG + chr1_4:39460098-39460117 None:intergenic 45.0%
GGCACAAGAAAATAGGGTGT+TGG - chr1_4:39460179-39460198 Msa0162480:intron 45.0%
! GTATGAACTCTTCTGGGGAT+TGG + chr1_4:39460338-39460357 None:intergenic 45.0%
CTTTCAGCAACTCTCCTCAA+TGG - chr1_4:39460479-39460498 Msa0162480:CDS 45.0%
CATAAAGCTGAGGACGATTC+AGG - chr1_4:39460657-39460676 Msa0162480:CDS 45.0%
CGAACATCGGTATCTGAGTT+TGG - chr1_4:39460687-39460706 Msa0162480:CDS 45.0%
GAAGTTTCATGTGGCCATCA+CGG + chr1_4:39460761-39460780 None:intergenic 45.0%
! TTCACTGCGCTGATCAATTG+AGG + chr1_4:39460802-39460821 None:intergenic 45.0%
ACTTTATGGGCATTAGGTCG+CGG + chr1_4:39460890-39460909 None:intergenic 45.0%
ACTGGGACTTTATGGGCATT+AGG + chr1_4:39460896-39460915 None:intergenic 45.0%
TTCGAGATGGCTCATTAGAG+TGG - chr1_4:39460928-39460947 Msa0162480:intron 45.0%
TTTCAGGAACAACGGAAAGG+GGG + chr1_4:39461040-39461059 None:intergenic 45.0%
TCATCCAGAAGGAATGGATG+AGG - chr1_4:39461079-39461098 Msa0162480:intron 45.0%
CATCCAGAAGGAATGGATGA+GGG - chr1_4:39461080-39461099 Msa0162480:intron 45.0%
! GGAAGGTTCGATTTTCTGCA+TGG - chr1_4:39461101-39461120 Msa0162480:intron 45.0%
GTTACTTGTGGAGTCCTTTC+CGG + chr1_4:39461168-39461187 None:intergenic 45.0%
CCACAAGTAACGATGAACCT+CGG - chr1_4:39461177-39461196 Msa0162480:intron 45.0%
TCATTGACACTCTTGGAGAG+AGG - chr1_4:39461264-39461283 Msa0162480:intron 45.0%
! GTTTTCGTCTGACGATTGAG+TGG + chr1_4:39461363-39461382 None:intergenic 45.0%
TCGTCAGACGAAAACACAAC+CGG - chr1_4:39461368-39461387 Msa0162480:intron 45.0%
!! TGCAACGGTTTGTTGTTCAC+CGG + chr1_4:39461390-39461409 None:intergenic 45.0%
!! AAGACGAGGTTTTGTGCAGA+GGG - chr1_4:39461510-39461529 Msa0162480:intron 45.0%
CAGAGGGAAAGAATCATGCA+AGG - chr1_4:39461526-39461545 Msa0162480:intron 45.0%
GTCTTGTGATGTTGTTCCTG+TGG - chr1_4:39461679-39461698 Msa0162480:CDS 45.0%
AGCATCTGTCACAGTAACTG+AGG - chr1_4:39461709-39461728 Msa0162480:intron 45.0%
!!! TTTAAAAATTCAATTTTTAA+CGG + chr1_4:39458594-39458613 None:intergenic 5.0%
!!! AAAATTGAATTTTTAAAATT+TGG - chr1_4:39458597-39458616 Msa0162480:exon 5.0%
!!! AAATTGAATTTTTAAAATTT+GGG - chr1_4:39458598-39458617 Msa0162480:exon 5.0%
!!! TTATTTTTATATACTTTTTA+TGG + chr1_4:39458950-39458969 None:intergenic 5.0%
!!! ATTATATTTATATACTTTTA+AGG - chr1_4:39459117-39459136 Msa0162480:CDS 5.0%
CTCATCAAAACTCTCTCCGG+TGG - chr1_4:39458280-39458299 Msa0162480:three_prime_UTR 50.0%
CAGCTTAGTGGAGCTAAGAG+TGG - chr1_4:39459456-39459475 Msa0162480:CDS 50.0%
TGGTTCAAGGGTGATGCAAC+AGG + chr1_4:39459520-39459539 None:intergenic 50.0%
GCATCACCCTTGAACCAATC+AGG - chr1_4:39459523-39459542 Msa0162480:CDS 50.0%
AGGAGAGTCAGAGAAAGACG+AGG - chr1_4:39459543-39459562 Msa0162480:CDS 50.0%
GTGAGGGAAATTACTCTGGC+AGG - chr1_4:39459662-39459681 Msa0162480:CDS 50.0%
GTGCGGAAATCGTTCAGCTA+CGG - chr1_4:39459784-39459803 Msa0162480:intron 50.0%
TGCGGAAATCGTTCAGCTAC+GGG - chr1_4:39459785-39459804 Msa0162480:intron 50.0%
ATCGTTCAGCTACGGGAAAC+TGG - chr1_4:39459792-39459811 Msa0162480:intron 50.0%
! TGAAGGGTGATGACGAGGAT+TGG - chr1_4:39459857-39459876 Msa0162480:intron 50.0%
! GAAGGGTGATGACGAGGATT+GGG - chr1_4:39459858-39459877 Msa0162480:intron 50.0%
TTGCGCTACATAAGGCTCAG+AGG + chr1_4:39459947-39459966 None:intergenic 50.0%
CAAGACGCAGCTTATTGCCT+TGG - chr1_4:39459971-39459990 Msa0162480:intron 50.0%
AGGAGAGCCCTTGTTGAAGA+AGG - chr1_4:39460032-39460051 Msa0162480:intron 50.0%
GTTTGGGGACGACAACTTTG+CGG - chr1_4:39460704-39460723 Msa0162480:CDS 50.0%
! GCATTAGGTCGCGGTTGTTT+TGG + chr1_4:39460881-39460900 None:intergenic 50.0%
GGAATCGCTCCCTATATGTC+TGG + chr1_4:39460971-39460990 None:intergenic 50.0%
! AACGGAAAGGGGGCGAATTT+TGG + chr1_4:39461030-39461049 None:intergenic 50.0%
CTTCCCTCATCCATTCCTTC+TGG + chr1_4:39461086-39461105 None:intergenic 50.0%
CAGAAGGAATGGATGAGGGA+AGG - chr1_4:39461084-39461103 Msa0162480:intron 50.0%
CCGAGGTTCATCGTTACTTG+TGG + chr1_4:39461180-39461199 None:intergenic 50.0%
CTTGGAGAGAGGCTTTACGA+AGG - chr1_4:39461275-39461294 Msa0162480:intron 50.0%
TCTGACGATTGAGTGGCATC+TGG + chr1_4:39461356-39461375 None:intergenic 50.0%
TCAGTCGAAAAGTGAGCGTG+AGG - chr1_4:39461487-39461506 Msa0162480:intron 50.0%
!! GAAGACGAGGTTTTGTGCAG+AGG - chr1_4:39461509-39461528 Msa0162480:intron 50.0%
ACAGATGCTTCTTCAGCCAC+AGG + chr1_4:39461698-39461717 None:intergenic 50.0%
TAGTTCGCTTCGTCGGAACG+CGG - chr1_4:39458369-39458388 Msa0162480:three_prime_UTR 55.0%
TACTGGCGAGGCTCATCCTA+AGG - chr1_4:39458405-39458424 Msa0162480:three_prime_UTR 55.0%
ACTGGCGAGGCTCATCCTAA+GGG - chr1_4:39458406-39458425 Msa0162480:three_prime_UTR 55.0%
ACGGTGAAAGCGATCTCCCA+AGG + chr1_4:39458514-39458533 None:intergenic 55.0%
ATCAAGGAAACCGAGCCGTG+AGG - chr1_4:39459630-39459649 Msa0162480:CDS 55.0%
AAACCGAGCCGTGAGGAAGA+GGG - chr1_4:39459637-39459656 Msa0162480:CDS 55.0%
CCTCACTTCCCTCTTCCTCA+CGG + chr1_4:39459648-39459667 None:intergenic 55.0%
CGTGAGGAAGAGGGAAGTGA+GGG - chr1_4:39459646-39459665 Msa0162480:CDS 55.0%
TACTCTGGCAGGAGTGAGGA+TGG - chr1_4:39459673-39459692 Msa0162480:CDS 55.0%
GCTGAACGATTTCCGCACAC+TGG + chr1_4:39459782-39459801 None:intergenic 55.0%
! CTGGCCTTTGCAAATGCTGG+TGG - chr1_4:39459811-39459830 Msa0162480:intron 55.0%
! GAGAGTGAAGGGTGATGACG+AGG - chr1_4:39459852-39459871 Msa0162480:intron 55.0%
GACGCAGCTTATTGCCTTGG+AGG - chr1_4:39459974-39459993 Msa0162480:intron 55.0%
ACAACTTTGCGGTGGGCAGT+TGG - chr1_4:39460715-39460734 Msa0162480:CDS 55.0%
CAACTTTGCGGTGGGCAGTT+GGG - chr1_4:39460716-39460735 Msa0162480:CDS 55.0%
! TTGGAGTCTGGTGCTGAGAC+AGG - chr1_4:39461461-39461480 Msa0162480:intron 55.0%
AAGTGAGCGTGAGGAAGACG+AGG - chr1_4:39461496-39461515 Msa0162480:intron 55.0%
! CGGCGAGAGATCGATTCCAC+CGG + chr1_4:39458299-39458318 None:intergenic 60.0%
CGGTGGAATCGATCTCTCGC+CGG - chr1_4:39458297-39458316 Msa0162480:three_prime_UTR 60.0%
GGGTCAACAGCAGAACCACC+AGG + chr1_4:39458757-39458776 None:intergenic 60.0%
GAAACCGAGCCGTGAGGAAG+AGG - chr1_4:39459636-39459655 Msa0162480:CDS 60.0%
CTTCCCTCTTCCTCACGGCT+CGG + chr1_4:39459643-39459662 None:intergenic 60.0%
CCGTGAGGAAGAGGGAAGTG+AGG - chr1_4:39459645-39459664 Msa0162480:CDS 60.0%
TGGGGACGACAACTTTGCGG+TGG - chr1_4:39460707-39460726 Msa0162480:CDS 60.0%
GGGGACGACAACTTTGCGGT+GGG - chr1_4:39460708-39460727 Msa0162480:CDS 60.0%
AGCGCAGTGAACGTGCAGCA+GGG - chr1_4:39460811-39460830 Msa0162480:CDS 60.0%
CGGGAAATTGGTGGGGGCCA+TGG + chr1_4:39458241-39458260 None:intergenic 65.0%
CAGCGCAGTGAACGTGCAGC+AGG - chr1_4:39460810-39460829 Msa0162480:CDS 65.0%
GCGCAGTGAACGTGCAGCAG+GGG - chr1_4:39460812-39460831 Msa0162480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 39458092 39462264 39458092 ID=Msa0162480;Name=Msa0162480
chr1_4 mRNA 39458092 39462264 39458092 ID=Msa0162480-mRNA-1;Parent=Msa0162480;Name=Msa0162480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=119|1|1|1|0.75|0.6|5|399|753
chr1_4 exon 39458092 39458114 39458092 ID=Msa0162480-mRNA-1:exon:11448;Parent=Msa0162480-mRNA-1
chr1_4 exon 39458238 39459702 39458238 ID=Msa0162480-mRNA-1:exon:11447;Parent=Msa0162480-mRNA-1
chr1_4 exon 39460225 39460908 39460225 ID=Msa0162480-mRNA-1:exon:11446;Parent=Msa0162480-mRNA-1
chr1_4 exon 39461564 39461722 39461564 ID=Msa0162480-mRNA-1:exon:11445;Parent=Msa0162480-mRNA-1
chr1_4 exon 39461816 39462264 39461816 ID=Msa0162480-mRNA-1:exon:11444;Parent=Msa0162480-mRNA-1
chr1_4 five_prime_UTR 39462146 39462264 39462146 ID=Msa0162480-mRNA-1:five_prime_utr;Parent=Msa0162480-mRNA-1
chr1_4 CDS 39461816 39462145 39461816 ID=Msa0162480-mRNA-1:cds;Parent=Msa0162480-mRNA-1
chr1_4 CDS 39461564 39461722 39461564 ID=Msa0162480-mRNA-1:cds;Parent=Msa0162480-mRNA-1
chr1_4 CDS 39460225 39460908 39460225 ID=Msa0162480-mRNA-1:cds;Parent=Msa0162480-mRNA-1
chr1_4 CDS 39458614 39459702 39458614 ID=Msa0162480-mRNA-1:cds;Parent=Msa0162480-mRNA-1
chr1_4 three_prime_UTR 39458238 39458613 39458238 ID=Msa0162480-mRNA-1:three_prime_utr;Parent=Msa0162480-mRNA-1
chr1_4 three_prime_UTR 39458092 39458114 39458092 ID=Msa0162480-mRNA-1:three_prime_utr;Parent=Msa0162480-mRNA-1
Gene Sequence

>Msa0162480

ATGGTTGTTAAGATGATGAAATGGCGTCCATGGCCCCCACCAATTTCCCGTAAATTCGAAGTCAAACTTCTCATCAAAACTCTCTCCGGTGGAATCGATCTCTCGCCGGAGAATACATTCGCCGTTGAAATTCGTTGGAAAGGTCCTAAACTTGCTCTTAGTTCGCTTCGTCGGAACGCGGTTGTGAGAAATTTTACTGGCGAGGCTCATCCTAAGGGAGATGAAAACGATGTCGTTTTGTGGGATGAAGAGTTTTGTAGCTTTGTTAATCTTTCTGCTAATAAAGAGAATGGGTTTCATCCTTGGGAGATCGCTTTCACCGTTTTCAATGGTTTGAATCAGAGGCCAAAGAACAAGATTCCTGTGGTTGGAACAGGTTCATTGAATCTAGCTGAGTATGCATCTGTTGTTGATCAGAAGGATTTTGATTTGAGCATTCCACTTACAATTCCTGGTGGTTCTGCTGTTGACCCTTCTCTTTCACTCACTATATCAATCAGCTTAGTGGAGCTAAGAGTGGCTCAAGAGAATAGTGAGCTTGTTCATAAATCAATAGTGCCTGTTGCATCACCCTTGAACCAATCAGGAGAGTCAGAGAAAGACGAGGTTTCCACTATCAAAGCTGGTCTTAGGAAAGTTAAGATTTTGACTGAGTTTGTATCAACAAGGAAATCAAGGAAACCGAGCCGTGAGGAAGAGGGAAGTGAGGGAAATTACTCTGGCAGGAGTGAGGATGGCGAGTACAATTACCCTTTTGACTCTGACTCTCTTGATGATTTTGAGGAAGGGGATTCTCATTCAGAAGAGGTAAAGGAGGATTCCAGTGTGCGGAAATCGTTCAGCTACGGGAAACTGGCCTTTGCAAATGCTGGTGGATCATTCTATTCGAGCATGAGAGTGAAGGGTGATGACGAGGATTGGGTTTACTACAGTAATCACAAATCAGACGTTGGAAGTTTGCCAAAAGAGGATTCTATTGTTTCTTCCTCTGAGCCTTATGTAGCGCAAAGTTCAAGACGCAGCTTATTGCCTTGGAGGAAGAGAAAGTTGAGTTTCAGATCTCCTAAATCTAAAGGAGAGCCCTTGTTGAAGAAGGCATATGGAGAAGAAGGTGGTGATGATATTGATTTTGATCGCCGGCAGCTTAGCTCTGATGAATCTATTTCATTTGGGTCACATAAAGCTGAGGACGATTCAGGTGCAAATCGAACATCGGTATCTGAGTTTGGGGACGACAACTTTGCGGTGGGCAGTTGGGAGCAGAAAGAAGTAATGAGCCGTGATGGCCACATGAAACTTCAGACACAAGTCTTCTTTGCCTCAATTGATCAGCGCAGTGAACGTGCAGCAGGGGAGAGTGCTTGCACAGCTCTTGTTGCTGTAATTGCTGATTGGTTCCAAAACAACCGCGACCTAATGCCCATAAAGTCCCAGTTTGATAGCTTAATTCGAGATGGCTCATTAGAGTGGAGAAACTTATGTGAAAACCAGACATATAGGGAGCGATTCCCCGACAAACATTTTGATCTAGAAACAGTTGTTCAGGCCAAAATTCGCCCCCTTTCCGTTGTTCCTGAAAAGTCCTTTATAGGTTTCTTTCATCCAGAAGGAATGGATGAGGGAAGGTTCGATTTTCTGCATGGTGCCATGTCTTTCGATAACATTTGGGATGAGATTAGTAATGCCGGAAAGGACTCCACAAGTAACGATGAACCTCGGATTTTTATTATCAGTTGGAATGACCATTTCTTCATCCTTAAAGTTGAAGCCGATTCTTACTGCATCATTGACACTCTTGGAGAGAGGCTTTACGAAGGATGCAATCAAGCATATATCTTGAAATTCGATGGCAACACGGTAATTTACAAAATGCCAGATGCCACTCAATCGTCAGACGAAAACACAACCGGTGAACAACAAACCGTTGCAGATGTATTAGAGTACAATGACAGGCAGGTTCAGCAAATCAATGATAAGGAGTTGGAGTCTGGTGCTGAGACAGGAGATCAGTCGAAAAGTGAGCGTGAGGAAGACGAGGTTTTGTGCAGAGGGAAAGAATCATGCAAGGAATACATCAAAAGTTTCTTAGCAGCAATACCTATTAGAGAATTACAAGCAGATGTGAAGAAAGGTTTAATATCATCAACTCCACTTCATCATAGACTACAAATTGAGTTTCACTATACTCAATTGTTGCAGTCTTGTGATGTTGTTCCTGTGGCTGAAGAAGCATCTGTCACAGTAACTGAGGTTAACACATAA
Protein sequence

>Msa0162480

MVVKMMKWRPWPPPISRKFEVKLLIKTLSGGIDLSPENTFAVEIRWKGPKLALSSLRRNAVVRNFTGEAHPKGDENDVVLWDEEFCSFVNLSANKENGFHPWEIAFTVFNGLNQRPKNKIPVVGTGSLNLAEYASVVDQKDFDLSIPLTIPGGSAVDPSLSLTISISLVELRVAQENSELVHKSIVPVASPLNQSGESEKDEVSTIKAGLRKVKILTEFVSTRKSRKPSREEEGSEGNYSGRSEDGEYNYPFDSDSLDDFEEGDSHSEEVKEDSSVRKSFSYGKLAFANAGGSFYSSMRVKGDDEDWVYYSNHKSDVGSLPKEDSIVSSSEPYVAQSSRRSLLPWRKRKLSFRSPKSKGEPLLKKAYGEEGGDDIDFDRRQLSSDESISFGSHKAEDDSGANRTSVSEFGDDNFAVGSWEQKEVMSRDGHMKLQTQVFFASIDQRSERAAGESACTALVAVIADWFQNNRDLMPIKSQFDSLIRDGSLEWRNLCENQTYRERFPDKHFDLETVVQAKIRPLSVVPEKSFIGFFHPEGMDEGRFDFLHGAMSFDNIWDEISNAGKDSTSNDEPRIFIISWNDHFFILKVEADSYCIIDTLGERLYEGCNQAYILKFDGNTVIYKMPDATQSSDENTTGEQQTVADVLEYNDRQVQQINDKELESGAETGDQSKSEREEDEVLCRGKESCKEYIKSFLAAIPIRELQADVKKGLISSTPLHHRLQIEFHYTQLLQSCDVVPVAEEASVTVTEVNT*