Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024690 | Msa0072130 | 0.890497 | 9.344349e-74 | -8.615850e-47 |
| Msa0024690 | Msa0120500 | 0.886723 | 2.667711e-72 | -8.615850e-47 |
| Msa0024690 | Msa0163720 | 0.851122 | 1.089929e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024690 | MtrunA17_Chr1g0178981 | 95.539 | 269 | 12 | 0 | 1 | 269 | 700 | 968 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024690 | AT1G19485.1 | 43.346 | 263 | 135 | 6 | 1 | 256 | 550 | 805 | 3.62e-56 | 193 |
| Msa0024690 | AT1G19485.2 | 43.346 | 263 | 135 | 6 | 1 | 256 | 550 | 805 | 3.62e-56 | 193 |
Find 80 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATGTTTAATAGTATT+TGG | 0.173886 | 1_1:+47376821 | Msa0024690:five_prime_UTR |
| GTGAGAGATGGTTGTGCTTT+GGG | 0.208094 | 1_1:+47380147 | Msa0024690:CDS |
| ATTAAACGCAATTCTGCTTT+TGG | 0.218518 | 1_1:-47379735 | None:intergenic |
| CTCTAATATTGATAAGAAAA+TGG | 0.221187 | 1_1:+47380208 | Msa0024690:CDS |
| TCTTTGTGATGGTGATAATA+TGG | 0.240883 | 1_1:+47379887 | Msa0024690:CDS |
| TTATGCAATGCTGCCATCTT+AGG | 0.244199 | 1_1:-47380098 | None:intergenic |
| GATAATGAAAAGCCGGATTC+TGG | 0.244429 | 1_1:+47380053 | Msa0024690:CDS |
| GACATGAAGGCCTCAAGTTT+TGG | 0.251482 | 1_1:+47376900 | Msa0024690:five_prime_UTR |
| AGTGAGAGATGGTTGTGCTT+TGG | 0.288593 | 1_1:+47380146 | Msa0024690:CDS |
| CCTCTTTCTTGCAGCTTCAA+TGG | 0.294909 | 1_1:-47379680 | None:intergenic |
| CGTATTCATCTTATGCCATT+TGG | 0.307057 | 1_1:+47378777 | Msa0024690:CDS |
| TATTTACATATTCACATCTA+AGG | 0.307570 | 1_1:-47380282 | None:intergenic |
| CCAGACTGTAAATGATTCTC+TGG | 0.312361 | 1_1:-47378527 | None:intergenic |
| TTTCTGCTACAGCTCAGTTT+TGG | 0.338281 | 1_1:-47379963 | None:intergenic |
| CTCTTTCTTGCAGCTTCAAT+GGG | 0.352650 | 1_1:-47379679 | None:intergenic |
| CTGAGGAAGCATTGTCTTCT+CGG | 0.361974 | 1_1:+47379925 | Msa0024690:CDS |
| TGCAGCCTTCGCCAAGCTAA+TGG | 0.372323 | 1_1:-47378690 | None:intergenic |
| CTTTCCAGTGTATATCGTTC+CGG | 0.378783 | 1_1:-47378729 | None:intergenic |
| GTGTATATCGTTCCGGTGAC+AGG | 0.384153 | 1_1:-47378722 | None:intergenic |
| ACTATTAAGTTAGAAGTCTC+TGG | 0.395932 | 1_1:-47376869 | None:intergenic |
| CCAGAGAATCATTTACAGTC+TGG | 0.402777 | 1_1:+47378527 | Msa0024690:five_prime_UTR |
| GTTCAAGTGTCACCGATAAC+AGG | 0.413037 | 1_1:+47378803 | Msa0024690:CDS |
| CCGAAAACAGTACCTGTTAT+CGG | 0.414337 | 1_1:-47378815 | None:intergenic |
| GGGAAAGGAGAGTTTGATAC+TGG | 0.422684 | 1_1:-47379659 | None:intergenic |
| TGATGGTGATAATATGGGTT+TGG | 0.424625 | 1_1:+47379893 | Msa0024690:CDS |
| TTAAACATTTCAAAGGTAAG+AGG | 0.433773 | 1_1:-47376811 | None:intergenic |
| CTTTGTGATGGTGATAATAT+GGG | 0.434640 | 1_1:+47379888 | Msa0024690:CDS |
| ATAATGAAAAGCCGGATTCT+GGG | 0.437268 | 1_1:+47380054 | Msa0024690:CDS |
| GCAAGAGCTGTGCTTTCAGC+TGG | 0.441680 | 1_1:-47379993 | None:intergenic |
| TAATGGACTTGTACGTTGTC+AGG | 0.453115 | 1_1:+47380175 | Msa0024690:CDS |
| AGAAGTCTCAGAGGACGAAA+TGG | 0.457429 | 1_1:-47378495 | None:intergenic |
| ATGCTACTCTTACCTGAAAA+CGG | 0.460532 | 1_1:-47379125 | None:intergenic |
| CGACTTCCATTCTTTCTATG+TGG | 0.466917 | 1_1:+47379596 | Msa0024690:CDS |
| ACTGATCCACATAGAAAGAA+TGG | 0.482260 | 1_1:-47379602 | None:intergenic |
| TGAGAGATGGTTGTGCTTTG+GGG | 0.482698 | 1_1:+47380148 | Msa0024690:CDS |
| ATCTTAGGAGGAAAGACTTC+GGG | 0.492038 | 1_1:-47380083 | None:intergenic |
| CCATTGAAGCTGCAAGAAAG+AGG | 0.499192 | 1_1:+47379680 | Msa0024690:CDS |
| TCGGGAGTAGTCCCAGAATC+CGG | 0.499534 | 1_1:-47380065 | None:intergenic |
| GAATCATTTACAGTCTGGAT+TGG | 0.508798 | 1_1:+47378532 | Msa0024690:five_prime_UTR |
| TCTTGCAGCTTCAATGGGAA+AGG | 0.509900 | 1_1:-47379674 | None:intergenic |
| CGAAGTCTTTCCTCCTAAGA+TGG | 0.511144 | 1_1:+47380085 | Msa0024690:CDS |
| AAGAAACAACCTTGGTTGCA+TGG | 0.512538 | 1_1:+47378749 | Msa0024690:CDS |
| TGCAATGCTGCCATCTTAGG+AGG | 0.515229 | 1_1:-47380095 | None:intergenic |
| TGAGGAAGCATTGTCTTCTC+GGG | 0.518917 | 1_1:+47379926 | Msa0024690:CDS |
| TGACACTTGAACACTCCAAA+TGG | 0.520023 | 1_1:-47378792 | None:intergenic |
| AACAATGAAAACCATTAGCT+TGG | 0.520423 | 1_1:+47378679 | Msa0024690:CDS |
| TCAACTCCGGGAGTATTTGT+CGG | 0.520616 | 1_1:-47380032 | None:intergenic |
| ACAGCTCTTGCTTGTAGAGA+TGG | 0.522738 | 1_1:+47380005 | Msa0024690:CDS |
| AAATGATTCTCTGGGAAGGT+TGG | 0.523640 | 1_1:-47378518 | None:intergenic |
| AAAACGCTATCATCTCTTCA+AGG | 0.525511 | 1_1:-47380231 | None:intergenic |
| GCAAATGATCTCCCTGTCAC+CGG | 0.536649 | 1_1:+47378710 | Msa0024690:CDS |
| AATACTATTAAACATTTCAA+AGG | 0.537534 | 1_1:-47376818 | None:intergenic |
| CGGAGTTGATAATGAAAAGC+CGG | 0.542156 | 1_1:+47380046 | Msa0024690:CDS |
| TCAGGCATGGTTGCATATTG+TGG | 0.547666 | 1_1:+47379084 | Msa0024690:intron |
| TTTGTTGCAGCTCTTTGTGA+TGG | 0.553499 | 1_1:+47379876 | Msa0024690:intron |
| GTTGCATATTGTGGTGCAGA+TGG | 0.562993 | 1_1:+47379093 | Msa0024690:CDS |
| CATCTTAGGAGGAAAGACTT+CGG | 0.564444 | 1_1:-47380084 | None:intergenic |
| CAGCATTGCATAAAGTGAGA+TGG | 0.578502 | 1_1:+47380108 | Msa0024690:CDS |
| TGTATATCGTTCCGGTGACA+GGG | 0.589324 | 1_1:-47378721 | None:intergenic |
| CTCAAGACCTAAAATTTACG+TGG | 0.594134 | 1_1:-47380256 | None:intergenic |
| CAGACTGTAAATGATTCTCT+GGG | 0.598089 | 1_1:-47378526 | None:intergenic |
| GGGTTTGGAATCTGTATCTG+AGG | 0.600826 | 1_1:+47379908 | Msa0024690:CDS |
| GAAAACCATTAGCTTGGCGA+AGG | 0.602327 | 1_1:+47378685 | Msa0024690:CDS |
| ATAGTAACCGCAGGACATGA+AGG | 0.613215 | 1_1:+47376887 | Msa0024690:five_prime_UTR |
| GTCACCGGAACGATATACAC+TGG | 0.613239 | 1_1:+47378725 | Msa0024690:CDS |
| CTGTAAATGATTCTCTGGGA+AGG | 0.613421 | 1_1:-47378522 | None:intergenic |
| TCAGCTAACAACTAAATCAG+TGG | 0.616202 | 1_1:+47379553 | Msa0024690:intron |
| GAGAGATGGTTGTGCTTTGG+GGG | 0.626750 | 1_1:+47380149 | Msa0024690:CDS |
| TTAACAAGGGTAGTGAGAGA+TGG | 0.634556 | 1_1:+47380135 | Msa0024690:CDS |
| CTTGAGGCCTTCATGTCCTG+CGG | 0.638879 | 1_1:-47376894 | None:intergenic |
| ATGTGGATCAGTGACTGAAG+AGG | 0.639441 | 1_1:+47379613 | Msa0024690:CDS |
| TCTAACTTAATAGTAACCGC+AGG | 0.643606 | 1_1:+47376878 | Msa0024690:five_prime_UTR |
| GGTGCACCGACAAATACTCC+CGG | 0.644237 | 1_1:+47380026 | Msa0024690:CDS |
| ACACTGGAAAGAAACAACCT+TGG | 0.652297 | 1_1:+47378741 | Msa0024690:CDS |
| GTGAGATGGAACATTAACAA+GGG | 0.656102 | 1_1:+47380122 | Msa0024690:CDS |
| TGGATTGGCAGTCAAAGCCA+AGG | 0.660146 | 1_1:+47378547 | Msa0024690:five_prime_UTR |
| AGTGAGATGGAACATTAACA+AGG | 0.663871 | 1_1:+47380121 | Msa0024690:CDS |
| TACGTAGTACCATGCAACCA+AGG | 0.666142 | 1_1:-47378758 | None:intergenic |
| ACCGTAGGTCCCAAAACTTG+AGG | 0.731840 | 1_1:-47376910 | None:intergenic |
| GAAGGTTGGAGAAGTCTCAG+AGG | 0.746167 | 1_1:-47378504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACTATTAAACATTTCAA+AGG | - | chr1_1:47376821-47376840 | None:intergenic | 15.0% |
| !! | TTGAAATGTTTAATAGTATT+TGG | + | chr1_1:47376821-47376840 | Msa0024690:five_prime_UTR | 15.0% |
| !!! | TATGTTTTGAGTTTAAATTT+GGG | + | chr1_1:47377308-47377327 | Msa0024690:intron | 15.0% |
| !! | TTTAAATTTGAAAAAGAACA+TGG | + | chr1_1:47377437-47377456 | Msa0024690:intron | 15.0% |
| !!! | GTCATAATTATTTTTATTCT+GGG | - | chr1_1:47379513-47379532 | None:intergenic | 15.0% |
| !!! | AGTCATAATTATTTTTATTC+TGG | - | chr1_1:47379514-47379533 | None:intergenic | 15.0% |
| !!! | TCTTTGTATTTGTTGAAATT+TGG | + | chr1_1:47376986-47377005 | Msa0024690:intron | 20.0% |
| !!! | CTTTGTATTTGTTGAAATTT+GGG | + | chr1_1:47376987-47377006 | Msa0024690:intron | 20.0% |
| !!! | TAATAAAAAAAGCGTATAGA+CGG | - | chr1_1:47377156-47377175 | None:intergenic | 20.0% |
| !!! | GTATGTTTTGAGTTTAAATT+TGG | + | chr1_1:47377307-47377326 | Msa0024690:intron | 20.0% |
| !! | TAAATCTACACCATAATTAA+AGG | - | chr1_1:47377409-47377428 | None:intergenic | 20.0% |
| !!! | AACAACCATATTTTTTTGAA+GGG | - | chr1_1:47377476-47377495 | None:intergenic | 20.0% |
| !!! | TAACAACCATATTTTTTTGA+AGG | - | chr1_1:47377477-47377496 | None:intergenic | 20.0% |
| !! | TCAAAAAAATATGGTTGTTA+AGG | + | chr1_1:47377477-47377496 | Msa0024690:intron | 20.0% |
| !!! | TATTGCAAATTTAAAACTGA+TGG | + | chr1_1:47377901-47377920 | Msa0024690:intron | 20.0% |
| !! | ATAGTTGTAATTTCTAATCA+AGG | - | chr1_1:47378379-47378398 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTTTTGAAAAAAC+TGG | + | chr1_1:47378873-47378892 | Msa0024690:intron | 20.0% |
| !!! | TGTTTCTTTTTGAAAAAACT+GGG | + | chr1_1:47378874-47378893 | Msa0024690:intron | 20.0% |
| !!! | TAAGTTAAGTACTCTTTTAA+GGG | - | chr1_1:47379307-47379326 | None:intergenic | 20.0% |
| !!! | ACAGTTTTAAAAGAAAATGA+GGG | - | chr1_1:47379357-47379376 | None:intergenic | 20.0% |
| !!! | TAATTATTTTTATTCTGGGA+TGG | - | chr1_1:47379509-47379528 | None:intergenic | 20.0% |
| !! | CTCTAATATTGATAAGAAAA+TGG | + | chr1_1:47380208-47380227 | Msa0024690:CDS | 20.0% |
| !! | TATTTACATATTCACATCTA+AGG | - | chr1_1:47380285-47380304 | None:intergenic | 20.0% |
| ! | TTAAACATTTCAAAGGTAAG+AGG | - | chr1_1:47376814-47376833 | None:intergenic | 25.0% |
| ! | CTATCGTTCAAAAAGAAATA+AGG | - | chr1_1:47376950-47376969 | None:intergenic | 25.0% |
| !!! | CTTATTTCTTTTTGAACGAT+AGG | + | chr1_1:47376948-47376967 | Msa0024690:intron | 25.0% |
| !! | AATAAAAAAAGCGTATAGAC+GGG | - | chr1_1:47377155-47377174 | None:intergenic | 25.0% |
| !! | GACTAGTTAATAAATTTGGT+TGG | - | chr1_1:47377377-47377396 | None:intergenic | 25.0% |
| !! | CCAAGACTAGTTAATAAATT+TGG | - | chr1_1:47377381-47377400 | None:intergenic | 25.0% |
| !! | CCAAATTTATTAACTAGTCT+TGG | + | chr1_1:47377378-47377397 | Msa0024690:intron | 25.0% |
| ! | AAAAATATGGTTGTTAAGGA+TGG | + | chr1_1:47377481-47377500 | Msa0024690:intron | 25.0% |
| ! | AGTTCTCTTTGTATATAGAT+TGG | + | chr1_1:47377533-47377552 | Msa0024690:intron | 25.0% |
| ! | GATCTAGAAAATCAAAATGT+CGG | + | chr1_1:47377740-47377759 | Msa0024690:intron | 25.0% |
| !! | ACAAAAAAGTGATTTGAAGT+AGG | - | chr1_1:47377969-47377988 | None:intergenic | 25.0% |
| !!! | TGATCAGAATTGCTTTTATT+TGG | + | chr1_1:47378002-47378021 | Msa0024690:intron | 25.0% |
| !! | TAGAATGTATTTTACTGCTA+AGG | + | chr1_1:47378028-47378047 | Msa0024690:intron | 25.0% |
| !! | GTTTTTATCTTTTTGTGAAG+TGG | + | chr1_1:47378123-47378142 | Msa0024690:intron | 25.0% |
| ! | ATATGATCCAGTTAAAATCA+TGG | - | chr1_1:47378577-47378596 | None:intergenic | 25.0% |
| ! | GTTGCATACTATGAAAAATA+CGG | + | chr1_1:47378914-47378933 | Msa0024690:intron | 25.0% |
| !! | GTAAGTTAAGTACTCTTTTA+AGG | - | chr1_1:47379308-47379327 | None:intergenic | 25.0% |
| !!! | CACAGTTTTAAAAGAAAATG+AGG | - | chr1_1:47379358-47379377 | None:intergenic | 25.0% |
| ! | AAAATTCATGTACCTAATCA+AGG | - | chr1_1:47379476-47379495 | None:intergenic | 25.0% |
| !! | GTTTTATCCACGTAAATTTT+AGG | + | chr1_1:47380249-47380268 | Msa0024690:three_prime_UTR | 25.0% |
| ! | TGTAAAAACTTATTATCCTC+TGG | + | chr1_1:47380357-47380376 | Msa0024690:three_prime_UTR | 25.0% |
| ACTATTAAGTTAGAAGTCTC+TGG | - | chr1_1:47376872-47376891 | None:intergenic | 30.0% | |
| GAAAAAAAAAAACTCACCGT+AGG | - | chr1_1:47376928-47376947 | None:intergenic | 30.0% | |
| ! | TGACAAGAATTTCTAAAGAG+AGG | - | chr1_1:47377055-47377074 | None:intergenic | 30.0% |
| ! | GGAAAGATTTGTGTTGTTAA+AGG | + | chr1_1:47377329-47377348 | Msa0024690:intron | 30.0% |
| CTTGGAGTTTCCTTTAATTA+TGG | + | chr1_1:47377396-47377415 | Msa0024690:intron | 30.0% | |
| GAAAAAGAACATGGTTGTTA+AGG | + | chr1_1:47377446-47377465 | Msa0024690:intron | 30.0% | |
| CATGTTAAGTTAGTTACCTT+TGG | + | chr1_1:47377510-47377529 | Msa0024690:intron | 30.0% | |
| ATATACAAAGAGAACTCCAA+AGG | - | chr1_1:47377529-47377548 | None:intergenic | 30.0% | |
| CTAGATCACTTAATGTTGTT+GGG | - | chr1_1:47377727-47377746 | None:intergenic | 30.0% | |
| TCTAGATCACTTAATGTTGT+TGG | - | chr1_1:47377728-47377747 | None:intergenic | 30.0% | |
| ! | TCGGTCATATGTCTTTAAAA+AGG | + | chr1_1:47377759-47377778 | Msa0024690:intron | 30.0% |
| ! | CGGTCATATGTCTTTAAAAA+GGG | + | chr1_1:47377760-47377779 | Msa0024690:intron | 30.0% |
| GGTAATAATAGACTAACAAC+AGG | + | chr1_1:47377781-47377800 | Msa0024690:intron | 30.0% | |
| ATAAAAGCAATTCTGATCAC+AGG | - | chr1_1:47378001-47378020 | None:intergenic | 30.0% | |
| GAATTGAGAGTAAATTCAAG+AGG | - | chr1_1:47378257-47378276 | None:intergenic | 30.0% | |
| ! | GTTAAAATCATGGATTACCT+TGG | - | chr1_1:47378567-47378586 | None:intergenic | 30.0% |
| !! | AGGTAATCCATGATTTTAAC+TGG | + | chr1_1:47378567-47378586 | Msa0024690:intron | 30.0% |
| ! | CTGTATCATTATGTGTTTTG+AGG | + | chr1_1:47378652-47378671 | Msa0024690:exon | 30.0% |
| !!! | ATCATTATGTGTTTTGAGGA+TGG | + | chr1_1:47378656-47378675 | Msa0024690:exon | 30.0% |
| AACAATGAAAACCATTAGCT+TGG | + | chr1_1:47378679-47378698 | Msa0024690:CDS | 30.0% | |
| CTTCTGTGATGTTATCAAAA+TGG | + | chr1_1:47378847-47378866 | Msa0024690:intron | 30.0% | |
| ATACTATGAAAAATACGGTG+TGG | + | chr1_1:47378919-47378938 | Msa0024690:intron | 30.0% | |
| TATAGAACAGGTCATTTAGA+TGG | - | chr1_1:47379056-47379075 | None:intergenic | 30.0% | |
| CTGACATGTTATTATAGAAC+AGG | - | chr1_1:47379068-47379087 | None:intergenic | 30.0% | |
| CTGTTCTATAATAACATGTC+AGG | + | chr1_1:47379066-47379085 | Msa0024690:intron | 30.0% | |
| CTTAAAACAGTGGTATGTAA+GGG | - | chr1_1:47379230-47379249 | None:intergenic | 30.0% | |
| ACTTAAAACAGTGGTATGTA+AGG | - | chr1_1:47379231-47379250 | None:intergenic | 30.0% | |
| TAGAGTTCAACTTAAAACAG+TGG | - | chr1_1:47379240-47379259 | None:intergenic | 30.0% | |
| CTGTTACAACTACAAATTTG+AGG | - | chr1_1:47379450-47379469 | None:intergenic | 30.0% | |
| TTGTAACAGAATCCTTGATT+AGG | + | chr1_1:47379461-47379480 | Msa0024690:intron | 30.0% | |
| !!! | ATTTTTATTCTGGGATGGAT+TGG | - | chr1_1:47379504-47379523 | None:intergenic | 30.0% |
| ! | TGCTTTTGGATAATAAGTCT+CGG | - | chr1_1:47379724-47379743 | None:intergenic | 30.0% |
| ! | ATTAAACGCAATTCTGCTTT+TGG | - | chr1_1:47379738-47379757 | None:intergenic | 30.0% |
| ! | ACTGATGATTGTCAGATTTT+AGG | + | chr1_1:47379776-47379795 | Msa0024690:CDS | 30.0% |
| GAATCACATCATAATTAGCA+AGG | - | chr1_1:47379806-47379825 | None:intergenic | 30.0% | |
| ! | TCTTTGTGATGGTGATAATA+TGG | + | chr1_1:47379887-47379906 | Msa0024690:CDS | 30.0% |
| ! | CTTTGTGATGGTGATAATAT+GGG | + | chr1_1:47379888-47379907 | Msa0024690:CDS | 30.0% |
| TCTAACTTAATAGTAACCGC+AGG | + | chr1_1:47376878-47376897 | Msa0024690:five_prime_UTR | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr1_1:47377011-47377030 | Msa0024690:intron | 35.0% | |
| AGAATCATATCTATCCAGTG+CGG | + | chr1_1:47377075-47377094 | Msa0024690:intron | 35.0% | |
| AAGAACATGGTTGTTAAGGA+TGG | + | chr1_1:47377450-47377469 | Msa0024690:intron | 35.0% | |
| GATGGCCCTTCAAAAAAATA+TGG | + | chr1_1:47377468-47377487 | Msa0024690:intron | 35.0% | |
| !! | AACAAGTTGGTTGTTAGCAA+GGG | - | chr1_1:47377592-47377611 | None:intergenic | 35.0% |
| ! | TTGCTAACAACCAACTTGTT+GGG | + | chr1_1:47377592-47377611 | Msa0024690:intron | 35.0% |
| TCACTTAATGTTGTTGGGTT+GGG | - | chr1_1:47377722-47377741 | None:intergenic | 35.0% | |
| ATCACTTAATGTTGTTGGGT+TGG | - | chr1_1:47377723-47377742 | None:intergenic | 35.0% | |
| ACAACAGGACTAATAATAGC+AGG | + | chr1_1:47377796-47377815 | Msa0024690:intron | 35.0% | |
| !!! | TTATTTTTTGTCTGTGCTGC+TGG | + | chr1_1:47377929-47377948 | Msa0024690:intron | 35.0% |
| TGCTAAGGAAAAGTAGTAGT+AGG | + | chr1_1:47378043-47378062 | Msa0024690:intron | 35.0% | |
| AAGTGCTAAGCAATTTAGCT+GGG | - | chr1_1:47378096-47378115 | None:intergenic | 35.0% | |
| ! | AAAGTGCTAAGCAATTTAGC+TGG | - | chr1_1:47378097-47378116 | None:intergenic | 35.0% |
| AAGTCAAGTTTACCAGCTAA+AGG | - | chr1_1:47378189-47378208 | None:intergenic | 35.0% | |
| AACAAGTTTAACAGCCTCTA+AGG | - | chr1_1:47378434-47378453 | None:intergenic | 35.0% | |
| ! | GCTGTTAAACTTGTTTCCAA+TGG | + | chr1_1:47378439-47378458 | Msa0024690:intron | 35.0% |
| CAGACTGTAAATGATTCTCT+GGG | - | chr1_1:47378529-47378548 | None:intergenic | 35.0% | |
| GAATCATTTACAGTCTGGAT+TGG | + | chr1_1:47378532-47378551 | Msa0024690:five_prime_UTR | 35.0% | |
| CGTATTCATCTTATGCCATT+TGG | + | chr1_1:47378777-47378796 | Msa0024690:CDS | 35.0% | |
| !! | ACAGTAATGTGCTGTTTAAG+TGG | - | chr1_1:47379026-47379045 | None:intergenic | 35.0% |
| CTATAATAACATGTCAGGCA+TGG | + | chr1_1:47379071-47379090 | Msa0024690:intron | 35.0% | |
| ATGCTACTCTTACCTGAAAA+CGG | - | chr1_1:47379128-47379147 | None:intergenic | 35.0% | |
| ! | AGGTAAGAGTAGCATTTTGT+TGG | + | chr1_1:47379133-47379152 | Msa0024690:intron | 35.0% |
| !!! | TCTTTTAAAACTGTGAGACG+TGG | + | chr1_1:47379363-47379382 | Msa0024690:intron | 35.0% |
| TGAAGCAACTAAACGAAAAC+TGG | - | chr1_1:47379421-47379440 | None:intergenic | 35.0% | |
| TCAGCTAACAACTAAATCAG+TGG | + | chr1_1:47379553-47379572 | Msa0024690:intron | 35.0% | |
| ACTGATCCACATAGAAAGAA+TGG | - | chr1_1:47379605-47379624 | None:intergenic | 35.0% | |
| AGCTGCAACAAATTGAAGAT+TGG | - | chr1_1:47379868-47379887 | None:intergenic | 35.0% | |
| ! | TGATGGTGATAATATGGGTT+TGG | + | chr1_1:47379893-47379912 | Msa0024690:CDS | 35.0% |
| ATAATGAAAAGCCGGATTCT+GGG | + | chr1_1:47380054-47380073 | Msa0024690:CDS | 35.0% | |
| AGTGAGATGGAACATTAACA+AGG | + | chr1_1:47380121-47380140 | Msa0024690:CDS | 35.0% | |
| GTGAGATGGAACATTAACAA+GGG | + | chr1_1:47380122-47380141 | Msa0024690:CDS | 35.0% | |
| AAAACGCTATCATCTCTTCA+AGG | - | chr1_1:47380234-47380253 | None:intergenic | 35.0% | |
| CTCAAGACCTAAAATTTACG+TGG | - | chr1_1:47380259-47380278 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGGTCAACACCAG+AGG | - | chr1_1:47380376-47380395 | None:intergenic | 35.0% |
| ! | ACATGAAGGCCTCAAGTTTT+GGG | + | chr1_1:47376901-47376920 | Msa0024690:five_prime_UTR | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr1_1:47377013-47377032 | None:intergenic | 40.0% |
| GAATCATATCTATCCAGTGC+GGG | + | chr1_1:47377076-47377095 | Msa0024690:intron | 40.0% | |
| ! | GGTTGTTAGCAAGGGTTTTT+GGG | - | chr1_1:47377584-47377603 | None:intergenic | 40.0% |
| ! | TGGTTGTTAGCAAGGGTTTT+TGG | - | chr1_1:47377585-47377604 | None:intergenic | 40.0% |
| !! | CAACAAGTTGGTTGTTAGCA+AGG | - | chr1_1:47377593-47377612 | None:intergenic | 40.0% |
| CTTGCTAACAACCAACTTGT+TGG | + | chr1_1:47377591-47377610 | Msa0024690:intron | 40.0% | |
| CTGAATGTAGATCCAGAATG+TGG | + | chr1_1:47377650-47377669 | Msa0024690:intron | 40.0% | |
| TTGCCATCTCTTCATTCACT+TGG | + | chr1_1:47377683-47377702 | Msa0024690:intron | 40.0% | |
| GTTCCAAGTGAATGAAGAGA+TGG | - | chr1_1:47377689-47377708 | None:intergenic | 40.0% | |
| ! | CTCTGAGTTCTGACAACATT+TGG | + | chr1_1:47377831-47377850 | Msa0024690:intron | 40.0% |
| GTTTACCAGCTAAAGGTTCA+TGG | - | chr1_1:47378182-47378201 | None:intergenic | 40.0% | |
| ATTTGTACCTTCAGCCTTAG+AGG | + | chr1_1:47378417-47378436 | Msa0024690:intron | 40.0% | |
| ! | TCCAATGGTTTGCATCATGA+TGG | + | chr1_1:47378454-47378473 | Msa0024690:intron | 40.0% |
| TCCATCATGATGCAAACCAT+TGG | - | chr1_1:47378458-47378477 | None:intergenic | 40.0% | |
| ! | AAATGATTCTCTGGGAAGGT+TGG | - | chr1_1:47378521-47378540 | None:intergenic | 40.0% |
| ! | CTGTAAATGATTCTCTGGGA+AGG | - | chr1_1:47378525-47378544 | None:intergenic | 40.0% |
| CCAGACTGTAAATGATTCTC+TGG | - | chr1_1:47378530-47378549 | None:intergenic | 40.0% | |
| CCAGAGAATCATTTACAGTC+TGG | + | chr1_1:47378527-47378546 | Msa0024690:five_prime_UTR | 40.0% | |
| CTTTCCAGTGTATATCGTTC+CGG | - | chr1_1:47378732-47378751 | None:intergenic | 40.0% | |
| ACACTGGAAAGAAACAACCT+TGG | + | chr1_1:47378741-47378760 | Msa0024690:CDS | 40.0% | |
| AAGAAACAACCTTGGTTGCA+TGG | + | chr1_1:47378749-47378768 | Msa0024690:CDS | 40.0% | |
| TGACACTTGAACACTCCAAA+TGG | - | chr1_1:47378795-47378814 | None:intergenic | 40.0% | |
| CCGAAAACAGTACCTGTTAT+CGG | - | chr1_1:47378818-47378837 | None:intergenic | 40.0% | |
| !! | CCGATAACAGGTACTGTTTT+CGG | + | chr1_1:47378815-47378834 | Msa0024690:intron | 40.0% |
| !! | TTTATTCTGGGATGGATTGG+TGG | - | chr1_1:47379501-47379520 | None:intergenic | 40.0% |
| CGACTTCCATTCTTTCTATG+TGG | + | chr1_1:47379596-47379615 | Msa0024690:CDS | 40.0% | |
| CTCTTTCTTGCAGCTTCAAT+GGG | - | chr1_1:47379682-47379701 | None:intergenic | 40.0% | |
| TTTGTTGCAGCTCTTTGTGA+TGG | + | chr1_1:47379876-47379895 | Msa0024690:intron | 40.0% | |
| !! | ACAGCTCAGTTTTGGTCTTT+TGG | - | chr1_1:47379958-47379977 | None:intergenic | 40.0% |
| ! | TTTCTGCTACAGCTCAGTTT+TGG | - | chr1_1:47379966-47379985 | None:intergenic | 40.0% |
| ! | GGCTTTTCATTATCAACTCC+GGG | - | chr1_1:47380047-47380066 | None:intergenic | 40.0% |
| ! | CGGCTTTTCATTATCAACTC+CGG | - | chr1_1:47380048-47380067 | None:intergenic | 40.0% |
| !! | CGGAGTTGATAATGAAAAGC+CGG | + | chr1_1:47380046-47380065 | Msa0024690:CDS | 40.0% |
| GATAATGAAAAGCCGGATTC+TGG | + | chr1_1:47380053-47380072 | Msa0024690:CDS | 40.0% | |
| ATCTTAGGAGGAAAGACTTC+GGG | - | chr1_1:47380086-47380105 | None:intergenic | 40.0% | |
| CATCTTAGGAGGAAAGACTT+CGG | - | chr1_1:47380087-47380106 | None:intergenic | 40.0% | |
| TTATGCAATGCTGCCATCTT+AGG | - | chr1_1:47380101-47380120 | None:intergenic | 40.0% | |
| CAGCATTGCATAAAGTGAGA+TGG | + | chr1_1:47380108-47380127 | Msa0024690:CDS | 40.0% | |
| TTAACAAGGGTAGTGAGAGA+TGG | + | chr1_1:47380135-47380154 | Msa0024690:CDS | 40.0% | |
| !! | TAATGGACTTGTACGTTGTC+AGG | + | chr1_1:47380175-47380194 | Msa0024690:CDS | 40.0% |
| ATAGTAACCGCAGGACATGA+AGG | + | chr1_1:47376887-47376906 | Msa0024690:five_prime_UTR | 45.0% | |
| ! | GACATGAAGGCCTCAAGTTT+TGG | + | chr1_1:47376900-47376919 | Msa0024690:five_prime_UTR | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1_1:47377023-47377042 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1_1:47377020-47377039 | Msa0024690:intron | 45.0% |
| !! | CTAACAACCAACTTGTTGGG+TGG | + | chr1_1:47377595-47377614 | Msa0024690:intron | 45.0% |
| ! | GCACAGCATACCAATTTTGC+TGG | - | chr1_1:47377622-47377641 | None:intergenic | 45.0% |
| TGAAGAGATGGCAAGAGTGA+GGG | - | chr1_1:47377677-47377696 | None:intergenic | 45.0% | |
| ATGAAGAGATGGCAAGAGTG+AGG | - | chr1_1:47377678-47377697 | None:intergenic | 45.0% | |
| !!! | TGTTGGGTTGGGTTTTTAGC+TGG | - | chr1_1:47377711-47377730 | None:intergenic | 45.0% |
| ! | TGTCAGAACTCAGAGCATTC+AGG | - | chr1_1:47377826-47377845 | None:intergenic | 45.0% |
| TCTCTCCATGAACCTTTAGC+TGG | + | chr1_1:47378174-47378193 | Msa0024690:intron | 45.0% | |
| AGCATTGCGAATGAGTCAAC+TGG | + | chr1_1:47378295-47378314 | Msa0024690:intron | 45.0% | |
| !! | TTAACAGCCTCTAAGGCTGA+AGG | - | chr1_1:47378427-47378446 | None:intergenic | 45.0% |
| AGAAGTCTCAGAGGACGAAA+TGG | - | chr1_1:47378498-47378517 | None:intergenic | 45.0% | |
| ! | GAAAACCATTAGCTTGGCGA+AGG | + | chr1_1:47378685-47378704 | Msa0024690:CDS | 45.0% |
| TGTATATCGTTCCGGTGACA+GGG | - | chr1_1:47378724-47378743 | None:intergenic | 45.0% | |
| TACGTAGTACCATGCAACCA+AGG | - | chr1_1:47378761-47378780 | None:intergenic | 45.0% | |
| GTTCAAGTGTCACCGATAAC+AGG | + | chr1_1:47378803-47378822 | Msa0024690:CDS | 45.0% | |
| TCAGGCATGGTTGCATATTG+TGG | + | chr1_1:47379084-47379103 | Msa0024690:intron | 45.0% | |
| GTTGCATATTGTGGTGCAGA+TGG | + | chr1_1:47379093-47379112 | Msa0024690:CDS | 45.0% | |
| TTCTAATACCACGCCAGAAG+AGG | - | chr1_1:47379182-47379201 | None:intergenic | 45.0% | |
| TGCCTCGGTATGAATTTGAG+AGG | + | chr1_1:47379392-47379411 | Msa0024690:intron | 45.0% | |
| GTCCTCTCAAATTCATACCG+AGG | - | chr1_1:47379397-47379416 | None:intergenic | 45.0% | |
| ATGTGGATCAGTGACTGAAG+AGG | + | chr1_1:47379613-47379632 | Msa0024690:CDS | 45.0% | |
| GGGAAAGGAGAGTTTGATAC+TGG | - | chr1_1:47379662-47379681 | None:intergenic | 45.0% | |
| TCTTGCAGCTTCAATGGGAA+AGG | - | chr1_1:47379677-47379696 | None:intergenic | 45.0% | |
| CCTCTTTCTTGCAGCTTCAA+TGG | - | chr1_1:47379683-47379702 | None:intergenic | 45.0% | |
| CCATTGAAGCTGCAAGAAAG+AGG | + | chr1_1:47379680-47379699 | Msa0024690:CDS | 45.0% | |
| ! | GGGTTTGGAATCTGTATCTG+AGG | + | chr1_1:47379908-47379927 | Msa0024690:CDS | 45.0% |
| !! | CTGAGGAAGCATTGTCTTCT+CGG | + | chr1_1:47379925-47379944 | Msa0024690:CDS | 45.0% |
| !! | TGAGGAAGCATTGTCTTCTC+GGG | + | chr1_1:47379926-47379945 | Msa0024690:CDS | 45.0% |
| ACAGCTCTTGCTTGTAGAGA+TGG | + | chr1_1:47380005-47380024 | Msa0024690:CDS | 45.0% | |
| !! | TCAACTCCGGGAGTATTTGT+CGG | - | chr1_1:47380035-47380054 | None:intergenic | 45.0% |
| CGAAGTCTTTCCTCCTAAGA+TGG | + | chr1_1:47380085-47380104 | Msa0024690:CDS | 45.0% | |
| AGTGAGAGATGGTTGTGCTT+TGG | + | chr1_1:47380146-47380165 | Msa0024690:CDS | 45.0% | |
| GTGAGAGATGGTTGTGCTTT+GGG | + | chr1_1:47380147-47380166 | Msa0024690:CDS | 45.0% | |
| TGAGAGATGGTTGTGCTTTG+GGG | + | chr1_1:47380148-47380167 | Msa0024690:CDS | 45.0% | |
| !!! | GCCTCAAGTTTTGGGACCTA+CGG | + | chr1_1:47376909-47376928 | Msa0024690:five_prime_UTR | 50.0% |
| ACCGTAGGTCCCAAAACTTG+AGG | - | chr1_1:47376913-47376932 | None:intergenic | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr1_1:47377025-47377044 | Msa0024690:intron | 50.0% |
| GCAATCCTCACCTTACAAGC+CGG | - | chr1_1:47377033-47377052 | None:intergenic | 50.0% | |
| GAAAAACTCAAGTCCCGCAC+TGG | - | chr1_1:47377092-47377111 | None:intergenic | 50.0% | |
| GTTGGGTGGACCAGCAAAAT+TGG | + | chr1_1:47377609-47377628 | Msa0024690:intron | 50.0% | |
| AAGAGTGAGGGTCCACATTC+TGG | - | chr1_1:47377665-47377684 | None:intergenic | 50.0% | |
| GAAGGTTGGAGAAGTCTCAG+AGG | - | chr1_1:47378507-47378526 | None:intergenic | 50.0% | |
| !! | TGGATTGGCAGTCAAAGCCA+AGG | + | chr1_1:47378547-47378566 | Msa0024690:five_prime_UTR | 50.0% |
| GCAAATGATCTCCCTGTCAC+CGG | + | chr1_1:47378710-47378729 | Msa0024690:CDS | 50.0% | |
| GTGTATATCGTTCCGGTGAC+AGG | - | chr1_1:47378725-47378744 | None:intergenic | 50.0% | |
| GTCACCGGAACGATATACAC+TGG | + | chr1_1:47378725-47378744 | Msa0024690:CDS | 50.0% | |
| GCAATTACCAGCACCTCTTC+TGG | + | chr1_1:47379166-47379185 | Msa0024690:intron | 50.0% | |
| ! | GAGACGTGGATCTTTTGCCT+CGG | + | chr1_1:47379377-47379396 | Msa0024690:intron | 50.0% |
| TGCAATGCTGCCATCTTAGG+AGG | - | chr1_1:47380098-47380117 | None:intergenic | 50.0% | |
| GAGAGATGGTTGTGCTTTGG+GGG | + | chr1_1:47380149-47380168 | Msa0024690:CDS | 50.0% | |
| !! | TTGTGCTTTGGGGGAGCTAA+TGG | + | chr1_1:47380158-47380177 | Msa0024690:CDS | 50.0% |
| CTTGAGGCCTTCATGTCCTG+CGG | - | chr1_1:47376897-47376916 | None:intergenic | 55.0% | |
| TGCTGGTCCACCCAACAAGT+TGG | - | chr1_1:47377605-47377624 | None:intergenic | 55.0% | |
| TGCAGCCTTCGCCAAGCTAA+TGG | - | chr1_1:47378693-47378712 | None:intergenic | 55.0% | |
| !!! | TGGTGCTGCTGTCCGTTTTC+AGG | + | chr1_1:47379113-47379132 | Msa0024690:CDS | 55.0% |
| GCAAGAGCTGTGCTTTCAGC+TGG | - | chr1_1:47379996-47380015 | None:intergenic | 55.0% | |
| ! | GGTGCACCGACAAATACTCC+CGG | + | chr1_1:47380026-47380045 | Msa0024690:CDS | 55.0% |
| TCGGGAGTAGTCCCAGAATC+CGG | - | chr1_1:47380068-47380087 | None:intergenic | 55.0% | |
| TACCAGCACCTCTTCTGGCG+TGG | + | chr1_1:47379171-47379190 | Msa0024690:intron | 60.0% | |
| ! | TACCACGCCAGAAGAGGTGC+TGG | - | chr1_1:47379176-47379195 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47376807 | 47380404 | 47376807 | ID=Msa0024690;Name=Msa0024690 |
| chr1_1 | mRNA | 47376807 | 47380404 | 47376807 | ID=Msa0024690-mRNA-1;Parent=Msa0024690;Name=Msa0024690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=212|1|1|1|1|0.83|6|160|269 |
| chr1_1 | exon | 47376807 | 47376930 | 47376807 | ID=Msa0024690-mRNA-1:exon:13461;Parent=Msa0024690-mRNA-1 |
| chr1_1 | exon | 47378491 | 47378568 | 47378491 | ID=Msa0024690-mRNA-1:exon:13462;Parent=Msa0024690-mRNA-1 |
| chr1_1 | exon | 47378652 | 47378824 | 47378652 | ID=Msa0024690-mRNA-1:exon:13463;Parent=Msa0024690-mRNA-1 |
| chr1_1 | exon | 47379088 | 47379134 | 47379088 | ID=Msa0024690-mRNA-1:exon:13464;Parent=Msa0024690-mRNA-1 |
| chr1_1 | exon | 47379557 | 47379797 | 47379557 | ID=Msa0024690-mRNA-1:exon:13465;Parent=Msa0024690-mRNA-1 |
| chr1_1 | exon | 47379886 | 47380404 | 47379886 | ID=Msa0024690-mRNA-1:exon:13466;Parent=Msa0024690-mRNA-1 |
| chr1_1 | five_prime_UTR | 47376807 | 47376930 | 47376807 | ID=Msa0024690-mRNA-1:five_prime_utr;Parent=Msa0024690-mRNA-1 |
| chr1_1 | five_prime_UTR | 47378491 | 47378568 | 47378491 | ID=Msa0024690-mRNA-1:five_prime_utr;Parent=Msa0024690-mRNA-1 |
| chr1_1 | five_prime_UTR | 47378652 | 47378661 | 47378652 | ID=Msa0024690-mRNA-1:five_prime_utr;Parent=Msa0024690-mRNA-1 |
| chr1_1 | CDS | 47378662 | 47378824 | 47378662 | ID=Msa0024690-mRNA-1:cds;Parent=Msa0024690-mRNA-1 |
| chr1_1 | CDS | 47379088 | 47379134 | 47379088 | ID=Msa0024690-mRNA-1:cds;Parent=Msa0024690-mRNA-1 |
| chr1_1 | CDS | 47379557 | 47379797 | 47379557 | ID=Msa0024690-mRNA-1:cds;Parent=Msa0024690-mRNA-1 |
| chr1_1 | CDS | 47379886 | 47380244 | 47379886 | ID=Msa0024690-mRNA-1:cds;Parent=Msa0024690-mRNA-1 |
| chr1_1 | three_prime_UTR | 47380245 | 47380404 | 47380245 | ID=Msa0024690-mRNA-1:three_prime_utr;Parent=Msa0024690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
