AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120500 MtrunA17_Chr1g0178981 96.193 972 33 1 1 972 1 968 0.0 1944
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120500 AT1G19485.1 42.174 920 398 25 57 959 3 805 0.0 631
Msa0120500 AT1G19485.2 42.174 920 398 25 57 959 3 805 0.0 631

Find 239 sgRNAs with CRISPR-Local

Find 794 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTGGTTCTCACAATT+TGG 0.152126 1_3:-45427809 None:intergenic
GTGAGAGATGGTTGTGCTTT+GGG 0.208094 1_3:+45436107 Msa0120500:CDS
ATTAAACGCAATTCTGCTTT+TGG 0.218518 1_3:-45435695 None:intergenic
CTCTAATATTGATAAGAAAA+TGG 0.221187 1_3:+45436168 Msa0120500:CDS
TGGTTCATCTTATCACAAAA+TGG 0.221693 1_3:+45427367 Msa0120500:CDS
TATGGTGTCTTCTAAATATC+AGG 0.232318 1_3:+45427423 Msa0120500:CDS
CCTCATGATTATTTACTTGC+TGG 0.237869 1_3:+45430464 Msa0120500:CDS
AATAATGGCCTACTTGTATC+TGG 0.238881 1_3:-45428103 None:intergenic
TCTTTGTGATGGTGATAATA+TGG 0.240883 1_3:+45435847 Msa0120500:CDS
TTATGCAATGCTGCCATCTT+AGG 0.244199 1_3:-45436058 None:intergenic
GATAATGAAAAGCCGGATTC+TGG 0.244429 1_3:+45436013 Msa0120500:CDS
GACATGAAGGCCTCAAGTTT+TGG 0.251482 1_3:+45432847 Msa0120500:CDS
TGTATTCGCAGCAGCTTTCT+TGG 0.251698 1_3:-45427945 None:intergenic
ACCTTTCACAAAAGGGATTA+AGG 0.259506 1_3:+45424389 Msa0120500:five_prime_UTR
GTATGCAGAAGCAGCTTTCT+TGG 0.268262 1_3:-45428017 None:intergenic
AGTGAGAGATGGTTGTGCTT+TGG 0.288593 1_3:+45436106 Msa0120500:CDS
ACTCTCTTGTTTGCAATTGC+AGG 0.291928 1_3:-45424486 None:intergenic
CCTCTTTCTTGCAGCTTCAA+TGG 0.294909 1_3:-45435640 None:intergenic
GCATTCTTTCCCTTTGTATT+CGG 0.294913 1_3:-45427995 None:intergenic
ATTAGGTTTACTTACGGAAT+TGG 0.296469 1_3:+45425404 Msa0120500:CDS
GGGCTATCTTGCTGTCTTGT+TGG 0.306280 1_3:+45428321 Msa0120500:CDS
CGTATTCATCTTATGCCATT+TGG 0.307057 1_3:+45434723 Msa0120500:CDS
TATTTACATATTCACATCTA+AGG 0.307570 1_3:-45436242 None:intergenic
GGCTATCTTGCTGTCTTGTT+GGG 0.307911 1_3:+45428322 Msa0120500:CDS
CCAGACTGTAAATGATTCTC+TGG 0.312361 1_3:-45434473 None:intergenic
AATATCCATCTAAAAGCATT+AGG 0.316447 1_3:+45425387 Msa0120500:CDS
CAGGGTTTGAATATCAGTTC+TGG 0.319518 1_3:+45424447 Msa0120500:five_prime_UTR
TTCTTCTTCCTCACAGAGTT+TGG 0.324804 1_3:-45424748 None:intergenic
AAAATGGGTGCCTCACTTAC+TGG 0.325896 1_3:+45427383 Msa0120500:CDS
TTTCTGCTACAGCTCAGTTT+TGG 0.338281 1_3:-45435923 None:intergenic
AACATTGAGCATTTGAATAC+AGG 0.343917 1_3:-45429708 None:intergenic
ATTTCTCCAGATGTAGTTCC+TGG 0.344586 1_3:+45427869 Msa0120500:CDS
CTCTTTCTTGCAGCTTCAAT+GGG 0.352650 1_3:-45435639 None:intergenic
GAACAGTAAGAGGAACAAAT+TGG 0.352749 1_3:-45427823 None:intergenic
GAAATAAATTCAGCTGAATC+TGG 0.353877 1_3:-45427851 None:intergenic
CTGAGGAAGCATTGTCTTCT+CGG 0.361974 1_3:+45435885 Msa0120500:CDS
TGCAGCCTTCGCCAAGCTAA+TGG 0.372323 1_3:-45434636 None:intergenic
TAAATAGTGTGGCAATAGTT+AGG 0.374286 1_3:-45424530 None:intergenic
CTTGTTGGGCAATGGATCTC+TGG 0.375077 1_3:+45428336 Msa0120500:CDS
TTCTCACACTGAATCAATAA+TGG 0.377014 1_3:-45428118 None:intergenic
CTTTCCAGTGTATATCGTTC+CGG 0.378783 1_3:-45434675 None:intergenic
ATACTTGGATTCTTGAGGTT+TGG 0.380840 1_3:-45425663 None:intergenic
GCAGAGGTGCCGTGCAAATA+TGG 0.381854 1_3:+45427405 Msa0120500:CDS
GTGTATATCGTTCCGGTGAC+AGG 0.384153 1_3:-45434668 None:intergenic
GTAGGTTGGATATTAATCAT+AGG 0.390058 1_3:+45428065 Msa0120500:CDS
GGGCATTTACCTTTCACAAA+AGG 0.395838 1_3:+45424381 Msa0120500:five_prime_UTR
ACTATTAAGTTAGAAGTCTC+TGG 0.395932 1_3:-45432816 None:intergenic
CCAGAGAATCATTTACAGTC+TGG 0.402777 1_3:+45434473 Msa0120500:CDS
GCGTTGTTTATCAACAGAAC+AGG 0.403768 1_3:+45424411 Msa0120500:five_prime_UTR
GCCCATGCAACAGTTCTAAT+AGG 0.404371 1_3:-45431763 None:intergenic
GTTCAAGTGTCACCGATAAC+AGG 0.413037 1_3:+45434749 Msa0120500:CDS
CCGAAAACAGTACCTGTTAT+CGG 0.414337 1_3:-45434761 None:intergenic
ACAAAGCCTATACTTTGTTT+CGG 0.415181 1_3:+45431727 Msa0120500:CDS
GGGAAAGGAGAGTTTGATAC+TGG 0.422684 1_3:-45435619 None:intergenic
GGCATTTACCTTTCACAAAA+GGG 0.424513 1_3:+45424382 Msa0120500:five_prime_UTR
TGATGGTGATAATATGGGTT+TGG 0.424625 1_3:+45435853 Msa0120500:CDS
TTAGGTTTACTTACGGAATT+GGG 0.426191 1_3:+45425405 Msa0120500:CDS
ATATCAAACAAAGAAACCTT+AGG 0.426697 1_3:-45424687 None:intergenic
GATGCTTGAGGTTCCAATAC+AGG 0.430718 1_3:-45428169 None:intergenic
AGGGTTTGAATATCAGTTCT+GGG 0.431046 1_3:+45424448 Msa0120500:five_prime_UTR
GCTGTTGCTGCTCATCCGCC+TGG 0.432574 1_3:+45427347 Msa0120500:CDS
CTTTGTGATGGTGATAATAT+GGG 0.434640 1_3:+45435848 Msa0120500:CDS
ATAATGAAAAGCCGGATTCT+GGG 0.437268 1_3:+45436014 Msa0120500:CDS
CTTGCTGTCTTGTTGGGCAA+TGG 0.437681 1_3:+45428328 Msa0120500:CDS
GAACTGCCAGGAACTACATC+TGG 0.439083 1_3:-45427875 None:intergenic
GTTCTGTATGGGCATTAGAT+TGG 0.440759 1_3:+45425878 Msa0120500:CDS
GCAAGAGCTGTGCTTTCAGC+TGG 0.441680 1_3:-45435953 None:intergenic
ACCACATGGTAGCCCTGTAT+TGG 0.442858 1_3:+45428156 Msa0120500:CDS
GCATCTGGTAGTGTCTCAAA+TGG 0.442876 1_3:+45427683 Msa0120500:CDS
AGGTGGCATGGGATGTCAAA+TGG 0.446867 1_3:+45428257 Msa0120500:CDS
AGAAGCCTCAGAGGACGAAA+TGG 0.451872 1_3:-45434441 None:intergenic
TAATGGACTTGTACGTTGTC+AGG 0.453115 1_3:+45436135 Msa0120500:CDS
TTACTTGCTGGCTGCCATGA+TGG 0.453345 1_3:+45430476 Msa0120500:CDS
AGCCTATACTTTGTTTCGGT+GGG 0.453635 1_3:+45431731 Msa0120500:CDS
TGCAAAAGGAGGAGCAACTT+GGG 0.454385 1_3:+45425636 Msa0120500:CDS
TCAGGCTCCCCATGCATCCT+AGG 0.455090 1_3:-45425904 None:intergenic
TTCATCTGCCACTGTTCCTA+AGG 0.455578 1_3:+45425484 Msa0120500:CDS
ATTATCACTAACCCTTCAAA+AGG 0.457036 1_3:-45431787 None:intergenic
ATGCTACTCTTACCTGAAAA+CGG 0.460532 1_3:-45435071 None:intergenic
CGAGAATTTCTTTGAAGACA+TGG 0.460588 1_3:+45424716 Msa0120500:CDS
AAAAGCATTAGGTTTACTTA+CGG 0.463447 1_3:+45425398 Msa0120500:CDS
CGACTTCCATTCTTTCTATG+TGG 0.466917 1_3:+45435556 Msa0120500:CDS
CCACCTTTCCATTATGAGCT+AGG 0.467563 1_3:-45428240 None:intergenic
ATGCAAAAGGAGGAGCAACT+TGG 0.467583 1_3:+45425635 Msa0120500:CDS
TCCTCATGCAAGCATCGAAT+GGG 0.467596 1_3:+45428301 Msa0120500:CDS
GTGTCATGCCTAGCTCATAA+TGG 0.467799 1_3:+45428232 Msa0120500:CDS
ATCATATCTCCCCGGGAAGA+AGG 0.467886 1_3:+45427463 Msa0120500:CDS
GTCCACCTAGGTAAAGTAAA+GGG 0.472023 1_3:+45424361 Msa0120500:five_prime_UTR
GCTCTCAGTGCATGAGGAAG+AGG 0.476909 1_3:-45429636 None:intergenic
GGTTCATCTTATCACAAAAT+GGG 0.477171 1_3:+45427368 Msa0120500:CDS
ACTGATCCACATAGAAAGAA+TGG 0.482260 1_3:-45435562 None:intergenic
TGAGAGATGGTTGTGCTTTG+GGG 0.482698 1_3:+45436108 Msa0120500:CDS
GGGCATTAGATTGGTGTCCT+AGG 0.483270 1_3:+45425887 Msa0120500:CDS
TTCCTCACAGAGTTTGGCAA+TGG 0.484283 1_3:-45424742 None:intergenic
TCTGGAAGTTGAACAGTAAG+AGG 0.486423 1_3:-45427833 None:intergenic
CTCTTTGATATTAAATAGTG+TGG 0.488495 1_3:-45424541 None:intergenic
CTATCCACTGCTATTACAGT+TGG 0.488965 1_3:-45427635 None:intergenic
ATCTTAGGAGGAAAGACTTC+GGG 0.492038 1_3:-45436043 None:intergenic
TCCTATTAGAACTGTTGCAT+GGG 0.493833 1_3:+45431762 Msa0120500:CDS
TCTTGTTGCAAGAAGTAGGT+TGG 0.499166 1_3:+45428051 Msa0120500:CDS
CCATTGAAGCTGCAAGAAAG+AGG 0.499192 1_3:+45435640 Msa0120500:CDS
TCGGGAGTAGTCCCAGAATC+CGG 0.499534 1_3:-45436025 None:intergenic
TTCCTATTAGAACTGTTGCA+TGG 0.500655 1_3:+45431761 Msa0120500:CDS
ATTGATTCAGTGTGAGAATG+AGG 0.501894 1_3:+45428123 Msa0120500:CDS
TGAATGTTGGAGGTTCTGTA+TGG 0.503920 1_3:+45425866 Msa0120500:CDS
ACAAATCGATAGAAATAAAG+AGG 0.505265 1_3:+45427519 Msa0120500:CDS
TCACATTTAACTGAACAATC+AGG 0.505566 1_3:-45425922 None:intergenic
TGTCCACCTAGGTAAAGTAA+AGG 0.506559 1_3:+45424360 Msa0120500:five_prime_UTR
GAATCATTTACAGTCTGGAT+TGG 0.508798 1_3:+45434478 Msa0120500:CDS
TCTTGCAGCTTCAATGGGAA+AGG 0.509900 1_3:-45435634 None:intergenic
CGAAGTCTTTCCTCCTAAGA+TGG 0.511144 1_3:+45436045 Msa0120500:CDS
AAGAAACAACCTTGGTTGCA+TGG 0.512538 1_3:+45434695 Msa0120500:CDS
TGCAATGCTGCCATCTTAGG+AGG 0.515229 1_3:-45436055 None:intergenic
CTCATAATGGAAAGGTGGCA+TGG 0.517043 1_3:+45428245 Msa0120500:CDS
TGAGGAAGCATTGTCTTCTC+GGG 0.518917 1_3:+45435886 Msa0120500:CDS
TGACACTTGAACACTCCAAA+TGG 0.520023 1_3:-45434738 None:intergenic
AACAATGAAAACCATTAGCT+TGG 0.520423 1_3:+45434625 Msa0120500:CDS
TCAACTCCGGGAGTATTTGT+CGG 0.520616 1_3:-45435992 None:intergenic
TATCAAACAAAGAAACCTTA+GGG 0.521010 1_3:-45424686 None:intergenic
ACAGCTCTTGCTTGTAGAGA+TGG 0.522738 1_3:+45435965 Msa0120500:CDS
AAATGATTCTCTGGGAAGGT+TGG 0.523640 1_3:-45434464 None:intergenic
TAGGTTGGATATTAATCATA+GGG 0.524008 1_3:+45428066 Msa0120500:CDS
AAACTCTTGTTGCAAGAAGT+AGG 0.524383 1_3:+45428047 Msa0120500:CDS
AAAACGCTATCATCTCTTCA+AGG 0.525511 1_3:-45436191 None:intergenic
AAGCCTATACTTTGTTTCGG+TGG 0.531447 1_3:+45431730 Msa0120500:CDS
CTTAGGGTTAGCACCACTGC+TGG 0.532612 1_3:-45424670 None:intergenic
ATTGGTGTCCTAGGATGCAT+GGG 0.532952 1_3:+45425896 Msa0120500:CDS
TTCTTTCTAGGCCTTCCTCT+AGG 0.533374 1_3:-45427542 None:intergenic
CAAATTATACCGTTCCATCA+TGG 0.534327 1_3:-45430490 None:intergenic
TTCCTCATGCAAGCATCGAA+TGG 0.535078 1_3:+45428300 Msa0120500:CDS
GCAAATGATCTCCCTGTCAC+CGG 0.536649 1_3:+45434656 Msa0120500:CDS
GGGACCAAGTACATAGCATC+TGG 0.536684 1_3:+45427668 Msa0120500:CDS
ACTACCAGATGCTATGTACT+TGG 0.537317 1_3:-45427672 None:intergenic
GATTGGTGTCCTAGGATGCA+TGG 0.541625 1_3:+45425895 Msa0120500:CDS
CGGAGTTGATAATGAAAAGC+CGG 0.542156 1_3:+45436006 Msa0120500:CDS
CAGCAGTGGTGCTAACCCTA+AGG 0.543146 1_3:+45424671 Msa0120500:CDS
AAACCATACTTGGATTCTTG+AGG 0.544459 1_3:-45425668 None:intergenic
TCAGGCATGGTTGCATATTG+TGG 0.547666 1_3:+45435030 Msa0120500:intron
AGAGACTTTGTGATGAATGT+TGG 0.551861 1_3:+45425853 Msa0120500:intron
AAAGCTGCTGCGAATACAAA+GGG 0.552131 1_3:+45427950 Msa0120500:CDS
TTTGTTGCAGCTCTTTGTGA+TGG 0.553499 1_3:+45435836 Msa0120500:intron
AAAGCTGCTCCGAATACAAA+GGG 0.553544 1_3:+45427986 Msa0120500:CDS
ATAATGGCCTACTTGTATCT+GGG 0.555195 1_3:-45428102 None:intergenic
CATCTGGTAGTGTCTCAAAT+GGG 0.555891 1_3:+45427684 Msa0120500:CDS
TGCTGGCTGCCATGATGGAA+CGG 0.557319 1_3:+45430481 Msa0120500:CDS
TTAAATGTGCAGAGAATGGA+AGG 0.560081 1_3:+45425358 Msa0120500:intron
GCTACAGCGGCAAATGATGA+AGG 0.560213 1_3:+45424633 Msa0120500:CDS
GTTGCATATTGTGGTGCAGA+TGG 0.562993 1_3:+45435039 Msa0120500:CDS
GAGAGCAGTTTATACGCAGA+AGG 0.563777 1_3:+45429653 Msa0120500:CDS
CATCTTAGGAGGAAAGACTT+CGG 0.564444 1_3:-45436044 None:intergenic
GCCTATACTTTGTTTCGGTG+GGG 0.564923 1_3:+45431732 Msa0120500:CDS
TAGAAGACACCATATTTGCA+CGG 0.566075 1_3:-45427414 None:intergenic
AATTCTTCATCTAAATGTGA+TGG 0.566247 1_3:+45431568 Msa0120500:CDS
GTTGTAGCCCAGATACAAGT+AGG 0.566508 1_3:+45428095 Msa0120500:CDS
CGTTGTTTATCAACAGAACA+GGG 0.567059 1_3:+45424412 Msa0120500:five_prime_UTR
GACTTTGTGATGAATGTTGG+AGG 0.568156 1_3:+45425856 Msa0120500:CDS
GAAAGCTGCTCCGAATACAA+AGG 0.568270 1_3:+45427985 Msa0120500:CDS
TCCCCACCGAAACAAAGTAT+AGG 0.572203 1_3:-45431733 None:intergenic
AGCAGTTTATACGCAGAAGG+AGG 0.573083 1_3:+45429656 Msa0120500:CDS
TGCTGATGATTCTGCTACAG+CGG 0.574927 1_3:+45424620 Msa0120500:CDS
AGCAAGTAAATAATCATGAG+GGG 0.577811 1_3:-45430462 None:intergenic
CAGCATTGCATAAAGTGAGA+TGG 0.578502 1_3:+45436068 Msa0120500:CDS
AAATAAAGAGGCCTAGAGGA+AGG 0.580422 1_3:+45427531 Msa0120500:CDS
TGCCCTTTACTTTACCTAGG+TGG 0.580871 1_3:-45424363 None:intergenic
TGATGTTCATCAGAACTGCC+AGG 0.583511 1_3:-45427887 None:intergenic
GGTGCCTCACTTACTGGCAG+AGG 0.584837 1_3:+45427389 Msa0120500:CDS
ACTGACCACTCCACTGTCAG+TGG 0.585703 1_3:-45430434 None:intergenic
TCATAATGGAAAGGTGGCAT+GGG 0.586605 1_3:+45428246 Msa0120500:CDS
AAGAAGTATCATATCTCCCC+GGG 0.588430 1_3:+45427456 Msa0120500:CDS
CAGCAAGTAAATAATCATGA+GGG 0.589131 1_3:-45430463 None:intergenic
TGTATATCGTTCCGGTGACA+GGG 0.589324 1_3:-45434667 None:intergenic
GAATCCAACTGTAATAGCAG+TGG 0.589763 1_3:+45427631 Msa0120500:CDS
GAAAGCTGCTGCGAATACAA+AGG 0.590265 1_3:+45427949 Msa0120500:CDS
CAGTGGATAGTACAAATTGT+GGG 0.590541 1_3:+45427648 Msa0120500:CDS
ATGGTGTCTTCTAAATATCA+GGG 0.592032 1_3:+45427424 Msa0120500:CDS
CTCAAGACCTAAAATTTACG+TGG 0.594134 1_3:-45436216 None:intergenic
CAGACTGTAAATGATTCTCT+GGG 0.598089 1_3:-45434472 None:intergenic
ATGCTTGAGGTTCCAATACA+GGG 0.598484 1_3:-45428168 None:intergenic
GGGTTTGGAATCTGTATCTG+AGG 0.600826 1_3:+45435868 Msa0120500:CDS
TTATTTGAAATTGTCCACCT+AGG 0.601577 1_3:+45424349 Msa0120500:five_prime_UTR
GAAAACCATTAGCTTGGCGA+AGG 0.602327 1_3:+45434631 Msa0120500:CDS
GCAAATGATGAAGGTGGTGG+TGG 0.602662 1_3:+45424642 Msa0120500:CDS
TTGTATCAATTGCAGGTGGG+AGG 0.602833 1_3:+45429611 Msa0120500:intron
TCAGCATAATATGCAAAAGG+AGG 0.605517 1_3:+45425625 Msa0120500:intron
AAACAAGAGAGTAATGGAAG+AGG 0.607256 1_3:+45424497 Msa0120500:exon
GAAGAAGTATCATATCTCCC+CGG 0.607569 1_3:+45427455 Msa0120500:CDS
AAATGCCCTTTACTTTACCT+AGG 0.608444 1_3:-45424366 None:intergenic
GGCACCTCTGCCAGTAAGTG+AGG 0.611285 1_3:-45427393 None:intergenic
GTAATCCATTTCGTCCTCTG+AGG 0.611999 1_3:+45434436 Msa0120500:intron
ATAGTAACCGCAGGACATGA+AGG 0.613215 1_3:+45432834 Msa0120500:CDS
GTCACCGGAACGATATACAC+TGG 0.613239 1_3:+45434671 Msa0120500:CDS
CTGTAAATGATTCTCTGGGA+AGG 0.613421 1_3:-45434468 None:intergenic
GAGGAATCAAGATTGCTAAG+AGG 0.614969 1_3:-45428283 None:intergenic
TCAGCTAACAACTAAATCAG+TGG 0.616202 1_3:+45435513 Msa0120500:intron
CCAGCAAGTAAATAATCATG+AGG 0.616229 1_3:-45430464 None:intergenic
AATTGCAAACAAGAGAGTAA+TGG 0.617423 1_3:+45424491 Msa0120500:exon
CCTAGCTCATAATGGAAAGG+TGG 0.620737 1_3:+45428240 Msa0120500:CDS
GCAGTTTATACGCAGAAGGA+GGG 0.621415 1_3:+45429657 Msa0120500:CDS
CAGAACTGATATTCAAACCC+TGG 0.624538 1_3:-45424446 None:intergenic
GCAGTGGATAGTACAAATTG+TGG 0.626003 1_3:+45427647 Msa0120500:CDS
GAGAGATGGTTGTGCTTTGG+GGG 0.626750 1_3:+45436109 Msa0120500:CDS
ATGCCTAGCTCATAATGGAA+AGG 0.628963 1_3:+45428237 Msa0120500:CDS
TTAACAAGGGTAGTGAGAGA+TGG 0.634556 1_3:+45436095 Msa0120500:CDS
GCCCATTCGATGCTTGCATG+AGG 0.635290 1_3:-45428302 None:intergenic
TAAACTGCTCTCAGTGCATG+AGG 0.635449 1_3:-45429642 None:intergenic
TCACAGCATTCCACTGACAG+TGG 0.636573 1_3:+45430424 Msa0120500:intron
CTTGAGGCCTTCATGTCCTG+CGG 0.638879 1_3:-45432841 None:intergenic
ATGTGGATCAGTGACTGAAG+AGG 0.639441 1_3:+45435573 Msa0120500:CDS
GCTAGGCATGACACAACTCT+AGG 0.640886 1_3:-45428223 None:intergenic
GAATGTTGGAGGTTCTGTAT+GGG 0.641333 1_3:+45425867 Msa0120500:CDS
TCTAACTTAATAGTAACCGC+AGG 0.643606 1_3:+45432825 Msa0120500:CDS
GGTGCACCGACAAATACTCC+CGG 0.644237 1_3:+45435986 Msa0120500:CDS
ATGGGACAAGTAGATGCTTG+AGG 0.647867 1_3:-45428181 None:intergenic
GCAAAAGGAGGAGCAACTTG+GGG 0.648508 1_3:+45425637 Msa0120500:CDS
ACACTGGAAAGAAACAACCT+TGG 0.652297 1_3:+45434687 Msa0120500:CDS
ATAGAAATAAAGAGGCCTAG+AGG 0.655432 1_3:+45427527 Msa0120500:CDS
GTGAGATGGAACATTAACAA+GGG 0.656102 1_3:+45436082 Msa0120500:CDS
TGGATTGGCAGTCAAAGCCA+AGG 0.660146 1_3:+45434493 Msa0120500:CDS
AGTGAGATGGAACATTAACA+AGG 0.663871 1_3:+45436081 Msa0120500:CDS
TACGTAGTACCATGCAACCA+AGG 0.666142 1_3:-45434704 None:intergenic
GCGGCAAATGATGAAGGTGG+TGG 0.666480 1_3:+45424639 Msa0120500:CDS
GCATTCCACTGACAGTGGAG+TGG 0.668981 1_3:+45430429 Msa0120500:intron
GGTGGTGGTAGTACCAGCAG+TGG 0.670189 1_3:+45424657 Msa0120500:CDS
TGATTGTTCAGTTAAATGTG+AGG 0.671600 1_3:+45425924 Msa0120500:CDS
CACCATTGCCAAACTCTGTG+AGG 0.675280 1_3:+45424740 Msa0120500:CDS
GCAAGTAAATAATCATGAGG+GGG 0.677289 1_3:-45430461 None:intergenic
TGGCATGGGATGTCAAATGG+AGG 0.678240 1_3:+45428260 Msa0120500:CDS
GAAGGTTGGAGAAGCCTCAG+AGG 0.683914 1_3:-45434450 None:intergenic
TGAAACGTGGCAGCTTACAG+AGG 0.684971 1_3:+45429730 Msa0120500:CDS
TCCAATACAGGGCTACCATG+TGG 0.685481 1_3:-45428157 None:intergenic
GACTTGTACCTTAGGAACAG+TGG 0.686551 1_3:-45425492 None:intergenic
TTTATATGTAGGTTGCTCTG+TGG 0.688819 1_3:+45431533 Msa0120500:intron
GAGGCAAATCATCAACCACA+TGG 0.705993 1_3:+45428142 Msa0120500:CDS
AAATGCTCAATGTTGAAACG+TGG 0.713740 1_3:+45429717 Msa0120500:CDS
TTGGTGTCCTAGGATGCATG+GGG 0.719461 1_3:+45425897 Msa0120500:CDS
ACCGTAGGTCCCAAAACTTG+AGG 0.731840 1_3:-45432857 None:intergenic
TTGTGATAAGATGAACCAGG+CGG 0.737973 1_3:-45427362 None:intergenic
ACAGCGGCAAATGATGAAGG+TGG 0.745146 1_3:+45424636 Msa0120500:CDS
ACAGTGGCAGATGAAAACTG+AGG 0.800494 1_3:-45425476 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATTGTTTTATATGT+AGG + chr1_3:45431522-45431541 Msa0120500:intron 10.0%
!!! TAAGTATATATTTTGCTTTT+AGG + chr1_3:45425542-45425561 Msa0120500:intron 15.0%
!!! AAATTTTATTTGAAGTTTGA+TGG + chr1_3:45426109-45426128 Msa0120500:intron 15.0%
!! TAAAAGGATTTAGATTTAAA+TGG + chr1_3:45426630-45426649 Msa0120500:intron 15.0%
!! TTTACTACATATATGAATAT+AGG - chr1_3:45427221-45427240 None:intergenic 15.0%
!! ACAAATTAACAATTTATCAA+TGG - chr1_3:45429478-45429497 None:intergenic 15.0%
!! ATTTATGATTTATATCACTT+AGG - chr1_3:45430646-45430665 None:intergenic 15.0%
!! TAAGTGATATAAATCATAAA+TGG + chr1_3:45430645-45430664 Msa0120500:intron 15.0%
!! TATCTTATATTGTATAAAAG+CGG + chr1_3:45430805-45430824 Msa0120500:intron 15.0%
!!! CAGTAATGTTTTTATTTTTA+TGG - chr1_3:45432210-45432229 None:intergenic 15.0%
!! AATATAAATTATAGCAGTTA+TGG - chr1_3:45432234-45432253 None:intergenic 15.0%
!! AATAAGTTAAATAAATCATC+TGG - chr1_3:45432450-45432469 None:intergenic 15.0%
!! AATACTATTAAACATTTCAA+AGG - chr1_3:45432768-45432787 None:intergenic 15.0%
!! TTGAAATGTTTAATAGTATT+TGG + chr1_3:45432768-45432787 Msa0120500:intron 15.0%
!!! TATGTTTTGAGTTTAAATTT+GGG + chr1_3:45433255-45433274 Msa0120500:intron 15.0%
!! TTTAAATTTGAAAAAGAACA+TGG + chr1_3:45433384-45433403 Msa0120500:intron 15.0%
!!! GTCATAATTATTTTTATTCT+GGG - chr1_3:45435473-45435492 None:intergenic 15.0%
!!! AGTCATAATTATTTTTATTC+TGG - chr1_3:45435474-45435493 None:intergenic 15.0%
!! TCTTCAAGTAAATATTTGAT+TGG - chr1_3:45425175-45425194 None:intergenic 20.0%
!! AATCAAATATTTACTTGAAG+AGG + chr1_3:45425174-45425193 Msa0120500:intron 20.0%
!! ATCAAATATTTACTTGAAGA+GGG + chr1_3:45425175-45425194 Msa0120500:intron 20.0%
!! TTTATTCAATGACATTTCTA+TGG + chr1_3:45425714-45425733 Msa0120500:intron 20.0%
!!! TTATTGTTTTGTTACTTCTT+TGG + chr1_3:45426002-45426021 Msa0120500:intron 20.0%
!!! TATTGTTTTGTTACTTCTTT+GGG + chr1_3:45426003-45426022 Msa0120500:intron 20.0%
!!! TATTGTTCTTTTAAGAGTTA+AGG + chr1_3:45426168-45426187 Msa0120500:intron 20.0%
!!! ATTGTTCTTTTAAGAGTTAA+GGG + chr1_3:45426169-45426188 Msa0120500:intron 20.0%
!! TTCTTAAATTGTGTTGAATT+TGG - chr1_3:45426327-45426346 None:intergenic 20.0%
!!! TCAACACAATTTAAGAATTT+TGG + chr1_3:45426330-45426349 Msa0120500:intron 20.0%
!!! TTTCATTGTTATTTGTTTCA+TGG - chr1_3:45426358-45426377 None:intergenic 20.0%
!!! AGCACATATTTTTGAAAAAA+TGG + chr1_3:45426533-45426552 Msa0120500:intron 20.0%
!!! TTTTATTCCAAACTGTTAAA+AGG + chr1_3:45426614-45426633 Msa0120500:intron 20.0%
!! TTTATCACTAGAAATGATTT+AGG + chr1_3:45426653-45426672 Msa0120500:intron 20.0%
!!! TTTTGTACTAAATAGTATAC+CGG + chr1_3:45426783-45426802 Msa0120500:intron 20.0%
!! CATAATTAACAAAAGGATTT+AGG - chr1_3:45427048-45427067 None:intergenic 20.0%
!!! AATCCTTTTGTTAATTATGA+TGG + chr1_3:45427049-45427068 Msa0120500:intron 20.0%
!! TATCAAAATAGGTATATGTA+TGG - chr1_3:45427164-45427183 None:intergenic 20.0%
!! TTACATACAAGAGTAAAAAA+AGG + chr1_3:45427738-45427757 Msa0120500:CDS 20.0%
!!! ACAACAATTTTCTAATACAA+AGG + chr1_3:45427913-45427932 Msa0120500:CDS 20.0%
!!! CAACAATTTTCTAATACAAA+GGG + chr1_3:45427914-45427933 Msa0120500:CDS 20.0%
!! TATCATCTTTATTAGATTTG+AGG + chr1_3:45428467-45428486 Msa0120500:intron 20.0%
!! AAAAGTTGAATAAGACATAA+TGG + chr1_3:45428577-45428596 Msa0120500:intron 20.0%
!! TTCATTAAAATTTCAGTGAT+TGG + chr1_3:45429497-45429516 Msa0120500:intron 20.0%
!! AAATCACAGATAGTAATAAA+AGG - chr1_3:45429545-45429564 None:intergenic 20.0%
!! AACAAATTTGTAATAGACAT+TGG + chr1_3:45430058-45430077 Msa0120500:intron 20.0%
!!! TAATATATGTTTTTCTAGAC+TGG + chr1_3:45430369-45430388 Msa0120500:intron 20.0%
!! AGGTAAATTTCATTTAAGAA+AGG - chr1_3:45430548-45430567 None:intergenic 20.0%
!!! AGGTAAAATTTTTGTAAGAT+AGG + chr1_3:45430601-45430620 Msa0120500:intron 20.0%
!! TATAGAATTTGTCTTTGATT+TGG + chr1_3:45430728-45430747 Msa0120500:intron 20.0%
!!! TGCATGATATTTTATTATGA+AGG + chr1_3:45431337-45431356 Msa0120500:intron 20.0%
!! GATACAGAATTATTACATAA+AGG - chr1_3:45431415-45431434 None:intergenic 20.0%
!!! ATGTTTTTATTTTTATGGCT+TGG - chr1_3:45432205-45432224 None:intergenic 20.0%
!! TATATTTGTTCTCTAATAAG+AGG + chr1_3:45432248-45432267 Msa0120500:intron 20.0%
!! AGTAATCTTCATAAAAACAA+GGG - chr1_3:45432659-45432678 None:intergenic 20.0%
!! AAGTAATCTTCATAAAAACA+AGG - chr1_3:45432660-45432679 None:intergenic 20.0%
!!! TCTTTGTATTTGTTGAAATT+TGG + chr1_3:45432933-45432952 Msa0120500:intron 20.0%
!!! CTTTGTATTTGTTGAAATTT+GGG + chr1_3:45432934-45432953 Msa0120500:intron 20.0%
!!! TAATAAAAAAAGCGTATAGA+CGG - chr1_3:45433103-45433122 None:intergenic 20.0%
!!! GTATGTTTTGAGTTTAAATT+TGG + chr1_3:45433254-45433273 Msa0120500:intron 20.0%
!! TAAATCTACACCATAATTAA+AGG - chr1_3:45433356-45433375 None:intergenic 20.0%
!!! AACAACCATATTTTTTTGAA+GGG - chr1_3:45433423-45433442 None:intergenic 20.0%
!!! TAACAACCATATTTTTTTGA+AGG - chr1_3:45433424-45433443 None:intergenic 20.0%
!! TCAAAAAAATATGGTTGTTA+AGG + chr1_3:45433424-45433443 Msa0120500:intron 20.0%
!!! TATTGCAAATTTAAAACTGA+TGG + chr1_3:45433847-45433866 Msa0120500:intron 20.0%
!!! TTGTTTCTTTTAGAAAAAAC+TGG + chr1_3:45434819-45434838 Msa0120500:intron 20.0%
!!! TGTTTCTTTTAGAAAAAACT+GGG + chr1_3:45434820-45434839 Msa0120500:intron 20.0%
!!! ACAGTTTTAAAAGAAAATGA+GGG - chr1_3:45435317-45435336 None:intergenic 20.0%
!!! TAATTATTTTTATTCTGGGA+TGG - chr1_3:45435469-45435488 None:intergenic 20.0%
!! CTCTAATATTGATAAGAAAA+TGG + chr1_3:45436168-45436187 Msa0120500:CDS 20.0%
!! TATTTACATATTCACATCTA+AGG - chr1_3:45436245-45436264 None:intergenic 20.0%
! CTCTTTGATATTAAATAGTG+TGG - chr1_3:45424544-45424563 None:intergenic 25.0%
! TATCAAACAAAGAAACCTTA+GGG - chr1_3:45424689-45424708 None:intergenic 25.0%
! ATATCAAACAAAGAAACCTT+AGG - chr1_3:45424690-45424709 None:intergenic 25.0%
! ATCATACCTTAAAAAAGTGA+CGG - chr1_3:45424820-45424839 None:intergenic 25.0%
! ATAATCATTGAATGACTAAG+TGG + chr1_3:45425130-45425149 Msa0120500:intron 25.0%
! ATGGTCAACCAAAAAATTAA+GGG - chr1_3:45425339-45425358 None:intergenic 25.0%
! AATGGTCAACCAAAAAATTA+AGG - chr1_3:45425340-45425359 None:intergenic 25.0%
!!! AATATCCATCTAAAAGCATT+AGG + chr1_3:45425387-45425406 Msa0120500:CDS 25.0%
!!! AAAAGCATTAGGTTTACTTA+CGG + chr1_3:45425398-45425417 Msa0120500:CDS 25.0%
!! TTTTCAGCATAATATGCAAA+AGG + chr1_3:45425622-45425641 Msa0120500:intron 25.0%
! AGTTAATATCAAACCATACT+TGG - chr1_3:45425681-45425700 None:intergenic 25.0%
!!! GATATTAACTTATTTTGTCG+TGG + chr1_3:45425691-45425710 Msa0120500:intron 25.0%
! ATTAACCTAAATGATTCAAG+TGG + chr1_3:45426387-45426406 Msa0120500:intron 25.0%
! TTAACCTAAATGATTCAAGT+GGG + chr1_3:45426388-45426407 Msa0120500:intron 25.0%
!! TCTAAATCCTTTTAACAGTT+TGG - chr1_3:45426624-45426643 None:intergenic 25.0%
! TTTGTACTAAATAGTATACC+GGG + chr1_3:45426784-45426803 Msa0120500:intron 25.0%
! AAAAAAAGTGAACGACAAAA+AGG - chr1_3:45426897-45426916 None:intergenic 25.0%
! TCTCCATCATAATTAACAAA+AGG - chr1_3:45427055-45427074 None:intergenic 25.0%
!!! TACCTATTTTGATAGTTTTG+TGG + chr1_3:45427170-45427189 Msa0120500:intron 25.0%
! ACAAATCGATAGAAATAAAG+AGG + chr1_3:45427519-45427538 Msa0120500:CDS 25.0%
!!! CTTTTTCTCTTGTTTGTAAT+AGG - chr1_3:45427596-45427615 None:intergenic 25.0%
! ATTACAAACAAGAGAAAAAG+AGG + chr1_3:45427596-45427615 Msa0120500:CDS 25.0%
!!! ATTACAGTTGGATTCTTTTT+TGG - chr1_3:45427626-45427645 None:intergenic 25.0%
!! CCATCTATTGAATTCTTTTT+CGG - chr1_3:45427776-45427795 None:intergenic 25.0%
!! TAGGTTGGATATTAATCATA+GGG + chr1_3:45428066-45428085 Msa0120500:CDS 25.0%
!! GATTTGAGGTATTTGAAATT+TGG + chr1_3:45428481-45428500 Msa0120500:intron 25.0%
! AACTACTTCAATAGACAATT+AGG + chr1_3:45428609-45428628 Msa0120500:intron 25.0%
! ACTACTTCAATAGACAATTA+GGG + chr1_3:45428610-45428629 Msa0120500:intron 25.0%
! AAAAACTTCTTATGTTCCAT+AGG - chr1_3:45428673-45428692 None:intergenic 25.0%
! GTTTACTTTATGATAAGCAT+TGG - chr1_3:45428702-45428721 None:intergenic 25.0%
! ATTTATCATAACATTGACCT+GGG - chr1_3:45428724-45428743 None:intergenic 25.0%
! AATTTATCATAACATTGACC+TGG - chr1_3:45428725-45428744 None:intergenic 25.0%
! TTGATTAAGCTAGTTATCTT+TGG + chr1_3:45428806-45428825 Msa0120500:intron 25.0%
!! TGTAATTTTACTTACAGCAT+AGG - chr1_3:45428856-45428875 None:intergenic 25.0%
! TATTGCAACTATTTACTTAC+TGG - chr1_3:45428916-45428935 None:intergenic 25.0%
! TGAATCTACATGAAAAGAAT+CGG - chr1_3:45428946-45428965 None:intergenic 25.0%
!! GTTTTTATTCGTCAAATTCA+TGG + chr1_3:45429043-45429062 Msa0120500:intron 25.0%
!! AAAGGGGATGAATATTATTT+TGG - chr1_3:45429283-45429302 None:intergenic 25.0%
!! TATTACTATCTGTGATTTTG+AGG + chr1_3:45429547-45429566 Msa0120500:intron 25.0%
! ATTATACTTGTATCAATTGC+AGG + chr1_3:45429604-45429623 Msa0120500:intron 25.0%
!! AGATCCTCGTTTTATAAAAT+TGG + chr1_3:45429683-45429702 Msa0120500:CDS 25.0%
! TTCCTCTATTCTAACTATAA+CGG + chr1_3:45429758-45429777 Msa0120500:intron 25.0%
! ATTTGTTCAAAAACGTAGAT+GGG - chr1_3:45429792-45429811 None:intergenic 25.0%
!! AATTTGTTCAAAAACGTAGA+TGG - chr1_3:45429793-45429812 None:intergenic 25.0%
! CTTCTTAAAAATGCAAGATA+AGG - chr1_3:45429894-45429913 None:intergenic 25.0%
!!! TTTTTAAGAAGTCGATTAGA+TGG + chr1_3:45429903-45429922 Msa0120500:intron 25.0%
!!! TCAAAGATTTGTTGAAAAGA+AGG - chr1_3:45429987-45430006 None:intergenic 25.0%
! ACATTGGAACACAAATTAAT+AGG + chr1_3:45430074-45430093 Msa0120500:intron 25.0%
! ATTATGCTTGTAAAAAACAG+TGG + chr1_3:45430144-45430163 Msa0120500:intron 25.0%
! GTAAGAATACTTTGTAGAAA+TGG + chr1_3:45430249-45430268 Msa0120500:intron 25.0%
! ATGCTATATATATTGTCTTC+TGG + chr1_3:45430300-45430319 Msa0120500:intron 25.0%
! TCATTTAAGAAAGGAAAAGA+AGG - chr1_3:45430539-45430558 None:intergenic 25.0%
! TTTACCTTGCTTTAGTAATA+TGG + chr1_3:45430561-45430580 Msa0120500:intron 25.0%
! TATTCCATATTACTAAAGCA+AGG - chr1_3:45430568-45430587 None:intergenic 25.0%
! AAGACCAAAATATCAAGAAA+CGG + chr1_3:45430892-45430911 Msa0120500:intron 25.0%
!! TCCATTGAACTTTTTAATGA+AGG + chr1_3:45430927-45430946 Msa0120500:intron 25.0%
! TCCTTCATTAAAAAGTTCAA+TGG - chr1_3:45430931-45430950 None:intergenic 25.0%
!! CTATTACTTCAGAAATTTTG+TGG - chr1_3:45430995-45431014 None:intergenic 25.0%
!!! CAAAATTTCTGAAGTAATAG+AGG + chr1_3:45430995-45431014 Msa0120500:intron 25.0%
!! GAATTATTACATAAAGGTGT+AGG - chr1_3:45431409-45431428 None:intergenic 25.0%
! AATTCTTCATCTAAATGTGA+TGG + chr1_3:45431568-45431587 Msa0120500:CDS 25.0%
! AGAAACTGATAGTCATAATT+AGG + chr1_3:45431862-45431881 Msa0120500:intron 25.0%
! TGAATAATTCTGTTTAACAG+TGG + chr1_3:45431911-45431930 Msa0120500:intron 25.0%
! CATATTTAAAAAGGGAAATC+TGG + chr1_3:45431946-45431965 Msa0120500:intron 25.0%
! AATTGCAAGAGATAGATTAA+AGG + chr1_3:45431976-45431995 Msa0120500:intron 25.0%
!! AGAATAAGCTCTCTAATTTT+TGG - chr1_3:45432068-45432087 None:intergenic 25.0%
! TTTACCAATGAATTTGATGA+GGG - chr1_3:45432375-45432394 None:intergenic 25.0%
! ATTTACCAATGAATTTGATG+AGG - chr1_3:45432376-45432395 None:intergenic 25.0%
! AAGTTAAATAAATCATCTGG+AGG - chr1_3:45432447-45432466 None:intergenic 25.0%
! GAAGATTACTTCAATAAACA+AGG + chr1_3:45432669-45432688 Msa0120500:intron 25.0%
! TTCAGATGTAAGATATTTGT+CGG - chr1_3:45432710-45432729 None:intergenic 25.0%
! TTAAACATTTCAAAGGTAAG+AGG - chr1_3:45432761-45432780 None:intergenic 25.0%
! CTATCGTTCAAAAAGAAATA+AGG - chr1_3:45432897-45432916 None:intergenic 25.0%
!!! CTTATTTCTTTTTGAACGAT+AGG + chr1_3:45432895-45432914 Msa0120500:intron 25.0%
!! AATAAAAAAAGCGTATAGAC+GGG - chr1_3:45433102-45433121 None:intergenic 25.0%
!! GACTAGTTAATAAATTTGGT+TGG - chr1_3:45433324-45433343 None:intergenic 25.0%
!! CCAAGACTAGTTAATAAATT+TGG - chr1_3:45433328-45433347 None:intergenic 25.0%
!! CCAAATTTATTAACTAGTCT+TGG + chr1_3:45433325-45433344 Msa0120500:intron 25.0%
! AAAAATATGGTTGTTAAGGA+TGG + chr1_3:45433428-45433447 Msa0120500:intron 25.0%
! AGTTCTCTTTGTATATAGAT+TGG + chr1_3:45433480-45433499 Msa0120500:intron 25.0%
! GATCTAGAAAATCAAAATGT+CGG + chr1_3:45433686-45433705 Msa0120500:intron 25.0%
!! ACAAAAAAGTGATTTGAAGT+AGG - chr1_3:45433915-45433934 None:intergenic 25.0%
!!! TGATCAGAATTGCTTTTATT+TGG + chr1_3:45433948-45433967 Msa0120500:intron 25.0%
!! TTAGAATGTATTTTACTGCT+AGG + chr1_3:45433973-45433992 Msa0120500:intron 25.0%
!! TAGAATGTATTTTACTGCTA+GGG + chr1_3:45433974-45433993 Msa0120500:intron 25.0%
!! GTTTTTATCTTTTTGTGAAG+TGG + chr1_3:45434069-45434088 Msa0120500:intron 25.0%
! ATATGATCCAGTTAAAATCA+TGG - chr1_3:45434523-45434542 None:intergenic 25.0%
! GTTGCATACTATGAAAAATA+CGG + chr1_3:45434860-45434879 Msa0120500:intron 25.0%
!! CATTGAGTCATTTCTTTTAA+GGG - chr1_3:45435253-45435272 None:intergenic 25.0%
!! TCATTGAGTCATTTCTTTTA+AGG - chr1_3:45435254-45435273 None:intergenic 25.0%
! TTAAAAGAAATGACTCAATG+AGG + chr1_3:45435253-45435272 Msa0120500:intron 25.0%
!!! CACAGTTTTAAAAGAAAATG+AGG - chr1_3:45435318-45435337 None:intergenic 25.0%
! AAAATTCATGTACCTAATCA+AGG - chr1_3:45435436-45435455 None:intergenic 25.0%
!! GTTTTATCCACGTAAATTTT+AGG + chr1_3:45436209-45436228 Msa0120500:three_prime_UTR 25.0%
! TGTAAAAACTTATTATCCTC+TGG + chr1_3:45436317-45436336 Msa0120500:three_prime_UTR 25.0%
! TTATTTGAAATTGTCCACCT+AGG + chr1_3:45424349-45424368 Msa0120500:five_prime_UTR 30.0%
AATTGCAAACAAGAGAGTAA+TGG + chr1_3:45424491-45424510 Msa0120500:exon 30.0%
TAAATAGTGTGGCAATAGTT+AGG - chr1_3:45424533-45424552 None:intergenic 30.0%
GAAAAAGAAGAAAAAGACGA+AGG + chr1_3:45424575-45424594 Msa0120500:CDS 30.0%
!!! TTTCTTCCGTCACTTTTTTA+AGG + chr1_3:45424811-45424830 Msa0120500:CDS 30.0%
GTTAATCTGTTGTGAAGAAA+TGG + chr1_3:45424883-45424902 Msa0120500:intron 30.0%
TTATAACCAACTCAAAGAGT+TGG - chr1_3:45425049-45425068 None:intergenic 30.0%
!! AACTCTTTGAGTTGGTTATA+AGG + chr1_3:45425048-45425067 Msa0120500:intron 30.0%
GATTGGATAGACATAATTGT+AGG - chr1_3:45425158-45425177 None:intergenic 30.0%
AATATTTACTTGAAGAGGGA+AGG + chr1_3:45425179-45425198 Msa0120500:intron 30.0%
ATATTTACTTGAAGAGGGAA+GGG + chr1_3:45425180-45425199 Msa0120500:intron 30.0%
CAAAAAATTAAGGGGTTGTT+TGG - chr1_3:45425330-45425349 None:intergenic 30.0%
!!! CAAACAACCCCTTAATTTTT+TGG + chr1_3:45425328-45425347 Msa0120500:intron 30.0%
TGGTCAACCAAAAAATTAAG+GGG - chr1_3:45425338-45425357 None:intergenic 30.0%
! GTAAACCTAATGCTTTTAGA+TGG - chr1_3:45425395-45425414 None:intergenic 30.0%
ATTAGGTTTACTTACGGAAT+TGG + chr1_3:45425404-45425423 Msa0120500:CDS 30.0%
TTAGGTTTACTTACGGAATT+GGG + chr1_3:45425405-45425424 Msa0120500:CDS 30.0%
ATATACTATAACTTCATGCC+TGG - chr1_3:45425522-45425541 None:intergenic 30.0%
! TCGCTGATTATTGTTTAACT+TGG + chr1_3:45425811-45425830 Msa0120500:intron 30.0%
TCACATTTAACTGAACAATC+AGG - chr1_3:45425925-45425944 None:intergenic 30.0%
TGATTGTTCAGTTAAATGTG+AGG + chr1_3:45425924-45425943 Msa0120500:CDS 30.0%
!! TTATTTGAAGTTTGATGGTG+AGG + chr1_3:45426114-45426133 Msa0120500:intron 30.0%
TAGCAGTAAAACATAGTGTA+CGG + chr1_3:45426237-45426256 Msa0120500:intron 30.0%
TACGGCATATATTATAAGCA+AGG + chr1_3:45426255-45426274 Msa0120500:intron 30.0%
ACGGCATATATTATAAGCAA+GGG + chr1_3:45426256-45426275 Msa0120500:intron 30.0%
ACATAATTGTAGAATAGAGG+TGG + chr1_3:45426281-45426300 Msa0120500:intron 30.0%
AATGCGTTAAAGAGAAAGTT+TGG + chr1_3:45426508-45426527 Msa0120500:intron 30.0%
ATGCGTTAAAGAGAAAGTTT+GGG + chr1_3:45426509-45426528 Msa0120500:intron 30.0%
TTGTACTAAATAGTATACCG+GGG + chr1_3:45426785-45426804 Msa0120500:intron 30.0%
AATAGGTATATGTATGGAGT+AGG - chr1_3:45427158-45427177 None:intergenic 30.0%
GACCACAAAACTATCAAAAT+AGG - chr1_3:45427175-45427194 None:intergenic 30.0%
TAAACCAAGTATCAGAAAGA+AGG - chr1_3:45427320-45427339 None:intergenic 30.0%
! ATTTTGTGATAAGATGAACC+AGG - chr1_3:45427368-45427387 None:intergenic 30.0%
TGGTTCATCTTATCACAAAA+TGG + chr1_3:45427367-45427386 Msa0120500:CDS 30.0%
GGTTCATCTTATCACAAAAT+GGG + chr1_3:45427368-45427387 Msa0120500:CDS 30.0%
TATGGTGTCTTCTAAATATC+AGG + chr1_3:45427423-45427442 Msa0120500:CDS 30.0%
ATGGTGTCTTCTAAATATCA+GGG + chr1_3:45427424-45427443 Msa0120500:CDS 30.0%
! TTTTCAGTAGGATTCTTTCT+AGG - chr1_3:45427557-45427576 None:intergenic 30.0%
AAGAGTAAAAAAAGGCCTAA+AGG + chr1_3:45427746-45427765 Msa0120500:CDS 30.0%
CCGAAAAAGAATTCAATAGA+TGG + chr1_3:45427773-45427792 Msa0120500:CDS 30.0%
! ACAAATTGGTTCTCACAATT+TGG - chr1_3:45427812-45427831 None:intergenic 30.0%
GAAATAAATTCAGCTGAATC+TGG - chr1_3:45427854-45427873 None:intergenic 30.0%
! GTAGGTTGGATATTAATCAT+AGG + chr1_3:45428065-45428084 Msa0120500:CDS 30.0%
TTCTCACACTGAATCAATAA+TGG - chr1_3:45428121-45428140 None:intergenic 30.0%
! AATGCTACATTTTGTGGAAT+GGG - chr1_3:45428202-45428221 None:intergenic 30.0%
TGAACAGAAAATGGAGAATA+AGG - chr1_3:45428381-45428400 None:intergenic 30.0%
! CTTATTCAACTTTTCATGAG+AGG - chr1_3:45428571-45428590 None:intergenic 30.0%
! GGAACATAAGAAGTTTTTCT+CGG + chr1_3:45428675-45428694 Msa0120500:intron 30.0%
! CTTTTCATGTAGATTCAACT+AGG + chr1_3:45428949-45428968 Msa0120500:intron 30.0%
! TTTTATGTTTGCCGTTGAAA+TGG + chr1_3:45428972-45428991 Msa0120500:intron 30.0%
TTTAGAAGCTAGCTATTAGT+GGG + chr1_3:45429355-45429374 Msa0120500:intron 30.0%
GTATCTCATACTACTTGATT+TGG + chr1_3:45429409-45429428 Msa0120500:intron 30.0%
AACATTGAGCATTTGAATAC+AGG - chr1_3:45429711-45429730 None:intergenic 30.0%
ATTCTCTCTATTGATACACT+TGG - chr1_3:45430100-45430119 None:intergenic 30.0%
AGCAAGTAAATAATCATGAG+GGG - chr1_3:45430465-45430484 None:intergenic 30.0%
CAGCAAGTAAATAATCATGA+GGG - chr1_3:45430466-45430485 None:intergenic 30.0%
GGCATAAATTGGATAACATT+AGG - chr1_3:45430518-45430537 None:intergenic 30.0%
! AAGGAAAAGAAGGCATAAAT+TGG - chr1_3:45430529-45430548 None:intergenic 30.0%
GCTTTAGTAATATGGAATAG+AGG + chr1_3:45430569-45430588 Msa0120500:intron 30.0%
TCATAAATGGTTATCTGTGT+AGG + chr1_3:45430658-45430677 Msa0120500:intron 30.0%
CATAAATGGTTATCTGTGTA+GGG + chr1_3:45430659-45430678 Msa0120500:intron 30.0%
!! CTAACACTTATTTTCGAGAA+AGG + chr1_3:45430775-45430794 Msa0120500:intron 30.0%
TATATTGTATAAAAGCGGAG+TGG + chr1_3:45430810-45430829 Msa0120500:intron 30.0%
! TACCATTTTCCATATAATGG+AGG - chr1_3:45431032-45431051 None:intergenic 30.0%
! GACTACCATTTTCCATATAA+TGG - chr1_3:45431035-45431054 None:intergenic 30.0%
GGAAGTTCAAAACAAACTAT+AGG + chr1_3:45431149-45431168 Msa0120500:intron 30.0%
GATAAACGTAAGAACATGTT+GGG - chr1_3:45431608-45431627 None:intergenic 30.0%
AGATAAACGTAAGAACATGT+TGG - chr1_3:45431609-45431628 None:intergenic 30.0%
TGTTCTTACGTTTATCTAGT+TGG + chr1_3:45431612-45431631 Msa0120500:intron 30.0%
GTTCTTACGTTTATCTAGTT+GGG + chr1_3:45431613-45431632 Msa0120500:intron 30.0%
TTCTTACGTTTATCTAGTTG+GGG + chr1_3:45431614-45431633 Msa0120500:intron 30.0%
! ACAAAGCCTATACTTTGTTT+CGG + chr1_3:45431727-45431746 Msa0120500:CDS 30.0%
ATTATCACTAACCCTTCAAA+AGG - chr1_3:45431790-45431809 None:intergenic 30.0%
AAGGCTCTCAAATTTCTTTA+AGG - chr1_3:45432033-45432052 None:intergenic 30.0%
TTAAAGAAATTTGAGAGCCT+TGG + chr1_3:45432032-45432051 Msa0120500:intron 30.0%
!! AAGCTCTCTAATTTTTGGAA+TGG - chr1_3:45432063-45432082 None:intergenic 30.0%
ATTATTGGGTAACTATTCAG+GGG - chr1_3:45432104-45432123 None:intergenic 30.0%
GATTATTGGGTAACTATTCA+GGG - chr1_3:45432105-45432124 None:intergenic 30.0%
TGATTATTGGGTAACTATTC+AGG - chr1_3:45432106-45432125 None:intergenic 30.0%
AATAAATAGAGAGAGGAAAG+GGG - chr1_3:45432133-45432152 None:intergenic 30.0%
GAATAAATAGAGAGAGGAAA+GGG - chr1_3:45432134-45432153 None:intergenic 30.0%
! CTTTAGGAATAAATAGAGAG+AGG - chr1_3:45432140-45432159 None:intergenic 30.0%
CTCTCTCTATTTATTCCTAA+AGG + chr1_3:45432138-45432157 Msa0120500:intron 30.0%
CTGGAGGAATTAAATAGATT+AGG - chr1_3:45432431-45432450 None:intergenic 30.0%
TACTTCAATAAACAAGGCAT+TGG + chr1_3:45432675-45432694 Msa0120500:intron 30.0%
ACTATTAAGTTAGAAGTCTC+TGG - chr1_3:45432819-45432838 None:intergenic 30.0%
GAAAAAAAAAAACTCACCGT+AGG - chr1_3:45432875-45432894 None:intergenic 30.0%
! TGACAAGAATTTCTAAAGAG+AGG - chr1_3:45433002-45433021 None:intergenic 30.0%
! GGAAAGATTTGTGTTGTTAA+AGG + chr1_3:45433276-45433295 Msa0120500:intron 30.0%
CTTGGAGTTTCCTTTAATTA+TGG + chr1_3:45433343-45433362 Msa0120500:intron 30.0%
GAAAAAGAACATGGTTGTTA+AGG + chr1_3:45433393-45433412 Msa0120500:intron 30.0%
CATGTTAAGTTAGTTACCTT+TGG + chr1_3:45433457-45433476 Msa0120500:intron 30.0%
ATATACAAAGAGAACTCCAA+AGG - chr1_3:45433476-45433495 None:intergenic 30.0%
CTAGATCACTTAATGTTGTT+GGG - chr1_3:45433673-45433692 None:intergenic 30.0%
TCTAGATCACTTAATGTTGT+TGG - chr1_3:45433674-45433693 None:intergenic 30.0%
! TCGGTCATATGTCTTTAAAA+AGG + chr1_3:45433705-45433724 Msa0120500:intron 30.0%
! CGGTCATATGTCTTTAAAAA+GGG + chr1_3:45433706-45433725 Msa0120500:intron 30.0%
GGTAATAATAGACTAACAAC+AGG + chr1_3:45433727-45433746 Msa0120500:intron 30.0%
ATAAAAGCAATTCTGATCAC+AGG - chr1_3:45433947-45433966 None:intergenic 30.0%
GAATTGAGAGTAAATTCAAG+AGG - chr1_3:45434203-45434222 None:intergenic 30.0%
! GTTAAAATCATGGATTACCT+TGG - chr1_3:45434513-45434532 None:intergenic 30.0%
!! AGGTAATCCATGATTTTAAC+TGG + chr1_3:45434513-45434532 Msa0120500:intron 30.0%
! CTGTATCATTATGTGTTTTG+AGG + chr1_3:45434598-45434617 Msa0120500:CDS 30.0%
!!! ATCATTATGTGTTTTGAGGA+TGG + chr1_3:45434602-45434621 Msa0120500:CDS 30.0%
AACAATGAAAACCATTAGCT+TGG + chr1_3:45434625-45434644 Msa0120500:CDS 30.0%
CTTCTGTGATGTTATCAAAA+TGG + chr1_3:45434793-45434812 Msa0120500:intron 30.0%
ATACTATGAAAAATACGGTG+TGG + chr1_3:45434865-45434884 Msa0120500:intron 30.0%
TATAGAACAGGTCATTTAGA+TGG - chr1_3:45435002-45435021 None:intergenic 30.0%
CTGACATGTTATTATAGAAC+AGG - chr1_3:45435014-45435033 None:intergenic 30.0%
CTGTTCTATAATAACATGTC+AGG + chr1_3:45435012-45435031 Msa0120500:intron 30.0%
TAGAGTTCAACTTAAAACAG+TGG - chr1_3:45435186-45435205 None:intergenic 30.0%
CTGTTACAACTACAAATTTG+AGG - chr1_3:45435410-45435429 None:intergenic 30.0%
TTGTAACAGAATCCTTGATT+AGG + chr1_3:45435421-45435440 Msa0120500:intron 30.0%
!!! ATTTTTATTCTGGGATGGAT+TGG - chr1_3:45435464-45435483 None:intergenic 30.0%
! TGCTTTTGGATAATAAGTCT+CGG - chr1_3:45435684-45435703 None:intergenic 30.0%
! ATTAAACGCAATTCTGCTTT+TGG - chr1_3:45435698-45435717 None:intergenic 30.0%
! ACTGATGATTGTCAGATTTT+AGG + chr1_3:45435736-45435755 Msa0120500:CDS 30.0%
GAATCACATCATAATTAGCA+AGG - chr1_3:45435766-45435785 None:intergenic 30.0%
! TCTTTGTGATGGTGATAATA+TGG + chr1_3:45435847-45435866 Msa0120500:CDS 30.0%
! CTTTGTGATGGTGATAATAT+GGG + chr1_3:45435848-45435867 Msa0120500:CDS 30.0%
!!! TTTTTTTTGGTCAATACCAG+AGG - chr1_3:45436336-45436355 None:intergenic 30.0%
AAATGCCCTTTACTTTACCT+AGG - chr1_3:45424369-45424388 None:intergenic 35.0%
GGCATTTACCTTTCACAAAA+GGG + chr1_3:45424382-45424401 Msa0120500:five_prime_UTR 35.0%
ACCTTTCACAAAAGGGATTA+AGG + chr1_3:45424389-45424408 Msa0120500:five_prime_UTR 35.0%
CGTTGTTTATCAACAGAACA+GGG + chr1_3:45424412-45424431 Msa0120500:five_prime_UTR 35.0%
AGGGTTTGAATATCAGTTCT+GGG + chr1_3:45424448-45424467 Msa0120500:five_prime_UTR 35.0%
! AAACAAGAGAGTAATGGAAG+AGG + chr1_3:45424497-45424516 Msa0120500:exon 35.0%
! CGAGAATTTCTTTGAAGACA+TGG + chr1_3:45424716-45424735 Msa0120500:CDS 35.0%
TGTTCTTGAGCAATACGATT+TGG + chr1_3:45424917-45424936 Msa0120500:intron 35.0%
! AGAGTTGGTTAGGATTGATT+AGG - chr1_3:45425034-45425053 None:intergenic 35.0%
TATGAACCGAATCTCTAAGT+TGG + chr1_3:45425247-45425266 Msa0120500:intron 35.0%
ATGAACCGAATCTCTAAGTT+GGG + chr1_3:45425248-45425267 Msa0120500:intron 35.0%
ACCATTAAATGTGCAGAGAA+TGG + chr1_3:45425354-45425373 Msa0120500:intron 35.0%
TCCATTCTCTGCACATTTAA+TGG - chr1_3:45425358-45425377 None:intergenic 35.0%
TTAAATGTGCAGAGAATGGA+AGG + chr1_3:45425358-45425377 Msa0120500:intron 35.0%
TCAGCATAATATGCAAAAGG+AGG + chr1_3:45425625-45425644 Msa0120500:intron 35.0%
ATACTTGGATTCTTGAGGTT+TGG - chr1_3:45425666-45425685 None:intergenic 35.0%
AAACCTCAAGAATCCAAGTA+TGG + chr1_3:45425665-45425684 Msa0120500:intron 35.0%
AAACCATACTTGGATTCTTG+AGG - chr1_3:45425671-45425690 None:intergenic 35.0%
AACTTGGCTAAACACTTTGT+TGG + chr1_3:45425827-45425846 Msa0120500:intron 35.0%
AGAGACTTTGTGATGAATGT+TGG + chr1_3:45425853-45425872 Msa0120500:intron 35.0%
TGTGATGTTTCATACGTTGA+GGG + chr1_3:45426086-45426105 Msa0120500:intron 35.0%
CTCTTAAAAGAACAATACGC+TGG - chr1_3:45426165-45426184 None:intergenic 35.0%
CGGCATATATTATAAGCAAG+GGG + chr1_3:45426257-45426276 Msa0120500:intron 35.0%
GGCACATAATTGTAGAATAG+AGG + chr1_3:45426278-45426297 Msa0120500:intron 35.0%
GTGTTGAATTTGGTATGCTA+TGG - chr1_3:45426317-45426336 None:intergenic 35.0%
! GTAATTTTCGATCACAAAGC+AGG - chr1_3:45426435-45426454 None:intergenic 35.0%
AAATGGAAAAACACTGCCTT+AGG + chr1_3:45426550-45426569 Msa0120500:intron 35.0%
GATATAGTACTATTGCTGAG+AGG - chr1_3:45426737-45426756 None:intergenic 35.0%
CTATCAAATAGCGACTATAG+TGG - chr1_3:45426761-45426780 None:intergenic 35.0%
GACATTTGGCATACAGAAAA+TGG - chr1_3:45426965-45426984 None:intergenic 35.0%
! GTTAATTATGATGGAGACAC+TGG + chr1_3:45427058-45427077 Msa0120500:intron 35.0%
TTATTTCCTACTTCCAAGTC+TGG - chr1_3:45427264-45427283 None:intergenic 35.0%
ATGACCTTCTTTCTGATACT+TGG + chr1_3:45427313-45427332 Msa0120500:intron 35.0%
TAGAAGACACCATATTTGCA+CGG - chr1_3:45427417-45427436 None:intergenic 35.0%
!!! AGGTTTTTTTTCCTTCTTCC+CGG - chr1_3:45427477-45427496 None:intergenic 35.0%
!!! TTTGTGCACGTGTCTTTTTT+AGG - chr1_3:45427497-45427516 None:intergenic 35.0%
ATAGAAATAAAGAGGCCTAG+AGG + chr1_3:45427527-45427546 Msa0120500:CDS 35.0%
!! ATTGCTTCGTTGTTTTCAGT+AGG - chr1_3:45427569-45427588 None:intergenic 35.0%
CAGTGGATAGTACAAATTGT+GGG + chr1_3:45427648-45427667 Msa0120500:CDS 35.0%
!!! TTCTTTTTCGGTCTTCCTTT+AGG - chr1_3:45427764-45427783 None:intergenic 35.0%
GAACAGTAAGAGGAACAAAT+TGG - chr1_3:45427826-45427845 None:intergenic 35.0%
GCATTCTTTCCCTTTGTATT+CGG - chr1_3:45427926-45427945 None:intergenic 35.0%
AAACTCTTGTTGCAAGAAGT+AGG + chr1_3:45428047-45428066 Msa0120500:CDS 35.0%
ATAATGGCCTACTTGTATCT+GGG - chr1_3:45428105-45428124 None:intergenic 35.0%
AATAATGGCCTACTTGTATC+TGG - chr1_3:45428106-45428125 None:intergenic 35.0%
! ATTGATTCAGTGTGAGAATG+AGG + chr1_3:45428123-45428142 Msa0120500:CDS 35.0%
! CAATGCTACATTTTGTGGAA+TGG - chr1_3:45428203-45428222 None:intergenic 35.0%
!! TCTGGAAGTGTAAGATGTTT+TGG + chr1_3:45428354-45428373 Msa0120500:intron 35.0%
!! CTGGAAGTGTAAGATGTTTT+GGG + chr1_3:45428355-45428374 Msa0120500:intron 35.0%
CCAAGAACATGAACAGAAAA+TGG - chr1_3:45428390-45428409 None:intergenic 35.0%
! CCATTTTCTGTTCATGTTCT+TGG + chr1_3:45428387-45428406 Msa0120500:intron 35.0%
ATAAAATGTGACACAGCCTA+TGG + chr1_3:45428654-45428673 Msa0120500:intron 35.0%
GCTTATCATAAAGTAAACCC+AGG + chr1_3:45428704-45428723 Msa0120500:intron 35.0%
! TCGGATCTTTGTAACTTGTA+GGG - chr1_3:45429227-45429246 None:intergenic 35.0%
!! TATTTTGGATCTGTGAGAGA+GGG - chr1_3:45429268-45429287 None:intergenic 35.0%
!!! TTATTTTGGATCTGTGAGAG+AGG - chr1_3:45429269-45429288 None:intergenic 35.0%
! AATAGCTAGCTTCTAAAGGA+GGG - chr1_3:45429352-45429371 None:intergenic 35.0%
! TAATAGCTAGCTTCTAAAGG+AGG - chr1_3:45429353-45429372 None:intergenic 35.0%
! CACTAATAGCTAGCTTCTAA+AGG - chr1_3:45429356-45429375 None:intergenic 35.0%
! CTTTAGAAGCTAGCTATTAG+TGG + chr1_3:45429354-45429373 Msa0120500:intron 35.0%
TTAGAAGCTAGCTATTAGTG+GGG + chr1_3:45429356-45429375 Msa0120500:intron 35.0%
CAAGTAGTATGAGATACTAG+TGG - chr1_3:45429406-45429425 None:intergenic 35.0%
!! TACTACTTGATTTGGTACCT+AGG + chr1_3:45429417-45429436 Msa0120500:intron 35.0%
ATACTTGTATCAATTGCAGG+TGG + chr1_3:45429607-45429626 Msa0120500:intron 35.0%
TACTTGTATCAATTGCAGGT+GGG + chr1_3:45429608-45429627 Msa0120500:intron 35.0%
! GGCTCCAATTTTATAAAACG+AGG - chr1_3:45429690-45429709 None:intergenic 35.0%
AAATGCTCAATGTTGAAACG+TGG + chr1_3:45429717-45429736 Msa0120500:CDS 35.0%
GTCCGTTATAGTTAGAATAG+AGG - chr1_3:45429763-45429782 None:intergenic 35.0%
GCAAGTAAATAATCATGAGG+GGG - chr1_3:45430464-45430483 None:intergenic 35.0%
CCAGCAAGTAAATAATCATG+AGG - chr1_3:45430467-45430486 None:intergenic 35.0%
CCTCATGATTATTTACTTGC+TGG + chr1_3:45430464-45430483 Msa0120500:CDS 35.0%
CAAATTATACCGTTCCATCA+TGG - chr1_3:45430493-45430512 None:intergenic 35.0%
ACCAAAATATCAAGAAACGG+TGG + chr1_3:45430895-45430914 Msa0120500:intron 35.0%
! TCCACCGTTTCTTGATATTT+TGG - chr1_3:45430899-45430918 None:intergenic 35.0%
! CCATATAATGGAGGACAATT+CGG - chr1_3:45431023-45431042 None:intergenic 35.0%
GTCCTCCATTATATGGAAAA+TGG + chr1_3:45431027-45431046 Msa0120500:intron 35.0%
!! TCTACTAGTCTTAGATGGTT+TGG + chr1_3:45431053-45431072 Msa0120500:intron 35.0%
!! CTACTAGTCTTAGATGGTTT+GGG + chr1_3:45431054-45431073 Msa0120500:intron 35.0%
ATAGGCCAATCATTTAAGAG+AGG + chr1_3:45431167-45431186 Msa0120500:intron 35.0%
CCAAACCTCTCTTAAATGAT+TGG - chr1_3:45431175-45431194 None:intergenic 35.0%
CCAATCATTTAAGAGAGGTT+TGG + chr1_3:45431172-45431191 Msa0120500:intron 35.0%
CAATACCTGACAGCATATTA+TGG + chr1_3:45431219-45431238 Msa0120500:intron 35.0%
TTTATATGTAGGTTGCTCTG+TGG + chr1_3:45431533-45431552 Msa0120500:intron 35.0%
CAGATAAACAACTGAGTCAA+TGG - chr1_3:45431702-45431721 None:intergenic 35.0%
TTCCTATTAGAACTGTTGCA+TGG + chr1_3:45431761-45431780 Msa0120500:CDS 35.0%
TCCTATTAGAACTGTTGCAT+GGG + chr1_3:45431762-45431781 Msa0120500:CDS 35.0%
! GATCATTCACATCAGTCTTT+TGG - chr1_3:45431826-45431845 None:intergenic 35.0%
GAAAGGGGAAAGTGATTATT+GGG - chr1_3:45432118-45432137 None:intergenic 35.0%
GGAATAAATAGAGAGAGGAA+AGG - chr1_3:45432135-45432154 None:intergenic 35.0%
TGGAGATTGACTATTATGCT+AGG + chr1_3:45432508-45432527 Msa0120500:intron 35.0%
TCTAACTTAATAGTAACCGC+AGG + chr1_3:45432825-45432844 Msa0120500:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_3:45432958-45432977 Msa0120500:intron 35.0%
AGAATCATATCTATCCAGTG+CGG + chr1_3:45433022-45433041 Msa0120500:intron 35.0%
AAGAACATGGTTGTTAAGGA+TGG + chr1_3:45433397-45433416 Msa0120500:intron 35.0%
GATGGCCCTTCAAAAAAATA+TGG + chr1_3:45433415-45433434 Msa0120500:intron 35.0%
!! AACAAGTTGGTTGTTAGCAA+GGG - chr1_3:45433538-45433557 None:intergenic 35.0%
! TTGCTAACAACCAACTTGTT+GGG + chr1_3:45433538-45433557 Msa0120500:intron 35.0%
TCACTTAATGTTGTTGGGTT+GGG - chr1_3:45433668-45433687 None:intergenic 35.0%
ATCACTTAATGTTGTTGGGT+TGG - chr1_3:45433669-45433688 None:intergenic 35.0%
ACAACAGGACTAATAATAGC+AGG + chr1_3:45433742-45433761 Msa0120500:intron 35.0%
!!! TTATTTTTTGTCTGTGCTGC+TGG + chr1_3:45433875-45433894 Msa0120500:intron 35.0%
AAGTGCTAAGCAATTTAGCT+GGG - chr1_3:45434042-45434061 None:intergenic 35.0%
! AAAGTGCTAAGCAATTTAGC+TGG - chr1_3:45434043-45434062 None:intergenic 35.0%
AACAAGTTTAACAGCCTCTA+AGG - chr1_3:45434380-45434399 None:intergenic 35.0%
! GCTGTTAAACTTGTTTCCAA+TGG + chr1_3:45434385-45434404 Msa0120500:intron 35.0%
CAGACTGTAAATGATTCTCT+GGG - chr1_3:45434475-45434494 None:intergenic 35.0%
GAATCATTTACAGTCTGGAT+TGG + chr1_3:45434478-45434497 Msa0120500:CDS 35.0%
CGTATTCATCTTATGCCATT+TGG + chr1_3:45434723-45434742 Msa0120500:CDS 35.0%
CTATAATAACATGTCAGGCA+TGG + chr1_3:45435017-45435036 Msa0120500:intron 35.0%
ATGCTACTCTTACCTGAAAA+CGG - chr1_3:45435074-45435093 None:intergenic 35.0%
! AGGTAAGAGTAGCATTTTGT+TGG + chr1_3:45435079-45435098 Msa0120500:intron 35.0%
CTTAAAACAGTGGTATGCAA+GGG - chr1_3:45435176-45435195 None:intergenic 35.0%
ACTTAAAACAGTGGTATGCA+AGG - chr1_3:45435177-45435196 None:intergenic 35.0%
!!! TCTTTTAAAACTGTGAGACG+TGG + chr1_3:45435323-45435342 Msa0120500:intron 35.0%
TGAAGCAACTAAACGAAAAC+TGG - chr1_3:45435381-45435400 None:intergenic 35.0%
TCAGCTAACAACTAAATCAG+TGG + chr1_3:45435513-45435532 Msa0120500:intron 35.0%
ACTGATCCACATAGAAAGAA+TGG - chr1_3:45435565-45435584 None:intergenic 35.0%
AGCTGCAACAAATTGAAGAT+TGG - chr1_3:45435828-45435847 None:intergenic 35.0%
! TGATGGTGATAATATGGGTT+TGG + chr1_3:45435853-45435872 Msa0120500:CDS 35.0%
ATAATGAAAAGCCGGATTCT+GGG + chr1_3:45436014-45436033 Msa0120500:CDS 35.0%
AGTGAGATGGAACATTAACA+AGG + chr1_3:45436081-45436100 Msa0120500:CDS 35.0%
GTGAGATGGAACATTAACAA+GGG + chr1_3:45436082-45436101 Msa0120500:CDS 35.0%
AAAACGCTATCATCTCTTCA+AGG - chr1_3:45436194-45436213 None:intergenic 35.0%
CTCAAGACCTAAAATTTACG+TGG - chr1_3:45436219-45436238 None:intergenic 35.0%
TGTCCACCTAGGTAAAGTAA+AGG + chr1_3:45424360-45424379 Msa0120500:five_prime_UTR 40.0%
GTCCACCTAGGTAAAGTAAA+GGG + chr1_3:45424361-45424380 Msa0120500:five_prime_UTR 40.0%
GGGCATTTACCTTTCACAAA+AGG + chr1_3:45424381-45424400 Msa0120500:five_prime_UTR 40.0%
! GCCTTAATCCCTTTTGTGAA+AGG - chr1_3:45424393-45424412 None:intergenic 40.0%
GCGTTGTTTATCAACAGAAC+AGG + chr1_3:45424411-45424430 Msa0120500:five_prime_UTR 40.0%
CAGAACTGATATTCAAACCC+TGG - chr1_3:45424449-45424468 None:intergenic 40.0%
CAGGGTTTGAATATCAGTTC+TGG + chr1_3:45424447-45424466 Msa0120500:five_prime_UTR 40.0%
! ACTCTCTTGTTTGCAATTGC+AGG - chr1_3:45424489-45424508 None:intergenic 40.0%
TTCTTCTTCCTCACAGAGTT+TGG - chr1_3:45424751-45424770 None:intergenic 40.0%
ATGTATCAGCTATGATGCTC+TGG + chr1_3:45424957-45424976 Msa0120500:intron 40.0%
CGATAGTGATACAAACTCTG+AGG - chr1_3:45425011-45425030 None:intergenic 40.0%
TCCTAACCAACTCTTTGAGT+TGG + chr1_3:45425040-45425059 Msa0120500:intron 40.0%
! ACCAACTCAAAGAGTTGGTT+AGG - chr1_3:45425044-45425063 None:intergenic 40.0%
CGAAACCCAACTTAGAGATT+CGG - chr1_3:45425256-45425275 None:intergenic 40.0%
GACTTTGTGATGAATGTTGG+AGG + chr1_3:45425856-45425875 Msa0120500:CDS 40.0%
TGAATGTTGGAGGTTCTGTA+TGG + chr1_3:45425866-45425885 Msa0120500:CDS 40.0%
GAATGTTGGAGGTTCTGTAT+GGG + chr1_3:45425867-45425886 Msa0120500:CDS 40.0%
GTTCTGTATGGGCATTAGAT+TGG + chr1_3:45425878-45425897 Msa0120500:CDS 40.0%
GTGTGATGTTTCATACGTTG+AGG + chr1_3:45426085-45426104 Msa0120500:intron 40.0%
!! TGAAGTTTGATGGTGAGGTA+AGG + chr1_3:45426119-45426138 Msa0120500:intron 40.0%
!! GAAGTTTGATGGTGAGGTAA+GGG + chr1_3:45426120-45426139 Msa0120500:intron 40.0%
!! AAGTTTGATGGTGAGGTAAG+GGG + chr1_3:45426121-45426140 Msa0120500:intron 40.0%
GCTACTTCTACTCACACATT+CGG - chr1_3:45426221-45426240 None:intergenic 40.0%
CTCACCCACTTGAATCATTT+AGG - chr1_3:45426395-45426414 None:intergenic 40.0%
GTGTTGTCAATCTCAGATAG+TGG + chr1_3:45426699-45426718 Msa0120500:intron 40.0%
! CACTATAACGTGGTGGAATT+TGG - chr1_3:45426827-45426846 None:intergenic 40.0%
CAAATTCCACCACGTTATAG+TGG + chr1_3:45426825-45426844 Msa0120500:intron 40.0%
GATGCTATACCACTATAACG+TGG - chr1_3:45426837-45426856 None:intergenic 40.0%
AAGGAATTACCCACATCACA+GGG - chr1_3:45426878-45426897 None:intergenic 40.0%
AAAGGAATTACCCACATCAC+AGG - chr1_3:45426879-45426898 None:intergenic 40.0%
TTGGCATACAGAAAATGGTG+AGG - chr1_3:45426960-45426979 None:intergenic 40.0%
CACCATGTTAAATTACCACC+TGG + chr1_3:45427018-45427037 Msa0120500:intron 40.0%
AGCCAGGTGGTAATTTAACA+TGG - chr1_3:45427023-45427042 None:intergenic 40.0%
CAAAAGGATTTAGGTAAGCC+AGG - chr1_3:45427039-45427058 None:intergenic 40.0%
ACTTACCTTTGTTCCAGACT+TGG + chr1_3:45427248-45427267 Msa0120500:intron 40.0%
! TACTTCCAAGTCTGGAACAA+AGG - chr1_3:45427256-45427275 None:intergenic 40.0%
TTTGTTCCAGACTTGGAAGT+AGG + chr1_3:45427255-45427274 Msa0120500:intron 40.0%
TTGTGATAAGATGAACCAGG+CGG - chr1_3:45427365-45427384 None:intergenic 40.0%
!! GAAGAAGTATCATATCTCCC+CGG + chr1_3:45427455-45427474 Msa0120500:CDS 40.0%
!! AAGAAGTATCATATCTCCCC+GGG + chr1_3:45427456-45427475 Msa0120500:CDS 40.0%
!!! GTTTTTTTTCCTTCTTCCCG+GGG - chr1_3:45427475-45427494 None:intergenic 40.0%
!!! GGTTTTTTTTCCTTCTTCCC+GGG - chr1_3:45427476-45427495 None:intergenic 40.0%
AAATAAAGAGGCCTAGAGGA+AGG + chr1_3:45427531-45427550 Msa0120500:CDS 40.0%
GAATCCAACTGTAATAGCAG+TGG + chr1_3:45427631-45427650 Msa0120500:CDS 40.0%
CTATCCACTGCTATTACAGT+TGG - chr1_3:45427638-45427657 None:intergenic 40.0%
GCAGTGGATAGTACAAATTG+TGG + chr1_3:45427647-45427666 Msa0120500:CDS 40.0%
ACTACCAGATGCTATGTACT+TGG - chr1_3:45427675-45427694 None:intergenic 40.0%
! CATCTGGTAGTGTCTCAAAT+GGG + chr1_3:45427684-45427703 Msa0120500:CDS 40.0%
TCTGGAAGTTGAACAGTAAG+AGG - chr1_3:45427836-45427855 None:intergenic 40.0%
ATTTCTCCAGATGTAGTTCC+TGG + chr1_3:45427869-45427888 Msa0120500:CDS 40.0%
AAAGCTGCTGCGAATACAAA+GGG + chr1_3:45427950-45427969 Msa0120500:CDS 40.0%
AAAGCTGCTCCGAATACAAA+GGG + chr1_3:45427986-45428005 Msa0120500:CDS 40.0%
TCTTGTTGCAAGAAGTAGGT+TGG + chr1_3:45428051-45428070 Msa0120500:CDS 40.0%
ATGCTTGAGGTTCCAATACA+GGG - chr1_3:45428171-45428190 None:intergenic 40.0%
! CTAGGCAATGCTACATTTTG+TGG - chr1_3:45428208-45428227 None:intergenic 40.0%
! ATGCCTAGCTCATAATGGAA+AGG + chr1_3:45428237-45428256 Msa0120500:CDS 40.0%
! TCATAATGGAAAGGTGGCAT+GGG + chr1_3:45428246-45428265 Msa0120500:CDS 40.0%
GAGGAATCAAGATTGCTAAG+AGG - chr1_3:45428286-45428305 None:intergenic 40.0%
AGACAATTAGGGTTGACAGT+TGG + chr1_3:45428621-45428640 Msa0120500:intron 40.0%
GTGTATTCCAATTGTTGTCC+AGG + chr1_3:45428828-45428847 Msa0120500:intron 40.0%
ATAGGTACCTGGACAACAAT+TGG - chr1_3:45428838-45428857 None:intergenic 40.0%
TTACTTACAGCATAGGTACC+TGG - chr1_3:45428849-45428868 None:intergenic 40.0%
GACCATTGCAACCATTTCAA+CGG - chr1_3:45428986-45429005 None:intergenic 40.0%
! CAAACAGAATTTTGTGCAGC+AGG - chr1_3:45429129-45429148 None:intergenic 40.0%
ATGTTTCCAGTAACCCACAA+TGG + chr1_3:45429157-45429176 Msa0120500:intron 40.0%
! TCATTGCAATCTGTCGTTTG+AGG - chr1_3:45429185-45429204 None:intergenic 40.0%
! GTCGGATCTTTGTAACTTGT+AGG - chr1_3:45429228-45429247 None:intergenic 40.0%
GGTATCTTTCACTGACAAGT+CGG - chr1_3:45429246-45429265 None:intergenic 40.0%
! ATTTTGGATCTGTGAGAGAG+GGG - chr1_3:45429267-45429286 None:intergenic 40.0%
TTATCAGTAGTTGTAGGTGG+GGG - chr1_3:45429309-45429328 None:intergenic 40.0%
CTTATCAGTAGTTGTAGGTG+GGG - chr1_3:45429310-45429329 None:intergenic 40.0%
GCTTATCAGTAGTTGTAGGT+GGG - chr1_3:45429311-45429330 None:intergenic 40.0%
TAGAAGCTAGCTATTAGTGG+GGG + chr1_3:45429357-45429376 Msa0120500:intron 40.0%
ATCAATGGCAGTGCTATGAT+GGG - chr1_3:45429463-45429482 None:intergenic 40.0%
TATCAATGGCAGTGCTATGA+TGG - chr1_3:45429464-45429483 None:intergenic 40.0%
!! ATTTTGAGGAGCTTATGACG+TGG + chr1_3:45429561-45429580 Msa0120500:intron 40.0%
! ATCCATTACGGGTCTTTTGT+AGG + chr1_3:45429865-45429884 Msa0120500:intron 40.0%
TACCTACAAAAGACCCGTAA+TGG - chr1_3:45429870-45429889 None:intergenic 40.0%
! CAATGCATTGGTGGAATATG+CGG - chr1_3:45429957-45429976 None:intergenic 40.0%
TATTCCACCAATGCATTGAG+AGG + chr1_3:45429959-45429978 Msa0120500:intron 40.0%
AAACAGTGGACCTGCATAAT+AGG + chr1_3:45430158-45430177 Msa0120500:intron 40.0%
AACAGTGGACCTGCATAATA+GGG + chr1_3:45430159-45430178 Msa0120500:intron 40.0%
CATAACAAGCCCTATTATGC+AGG - chr1_3:45430171-45430190 None:intergenic 40.0%
!! CTGCATAATAGGGCTTGTTA+TGG + chr1_3:45430169-45430188 Msa0120500:intron 40.0%
!! TAATAGGGCTTGTTATGGCT+TGG + chr1_3:45430174-45430193 Msa0120500:intron 40.0%
ATTGACAACATGATACCCAC+TGG - chr1_3:45430688-45430707 None:intergenic 40.0%
AGTGGGTATCATGTTGTCAA+TGG + chr1_3:45430687-45430706 Msa0120500:intron 40.0%
GTGGGTATCATGTTGTCAAT+GGG + chr1_3:45430688-45430707 Msa0120500:intron 40.0%
! ATGTTGTCAATGGGTTCTGT+AGG + chr1_3:45430697-45430716 Msa0120500:intron 40.0%
! TGTTGTCAATGGGTTCTGTA+GGG + chr1_3:45430698-45430717 Msa0120500:intron 40.0%
TATAAAAGCGGAGTGGTCTA+AGG + chr1_3:45430817-45430836 Msa0120500:intron 40.0%
ATAAAAGCGGAGTGGTCTAA+GGG + chr1_3:45430818-45430837 Msa0120500:intron 40.0%
! ATAGGGTGAGGTGCTTTAAA+AGG + chr1_3:45430845-45430864 Msa0120500:intron 40.0%
!! AGGTGCTTTAAAAGGTGATG+AGG + chr1_3:45430853-45430872 Msa0120500:intron 40.0%
!! GGTGCTTTAAAAGGTGATGA+GGG + chr1_3:45430854-45430873 Msa0120500:intron 40.0%
CCGAATTGTCCTCCATTATA+TGG + chr1_3:45431020-45431039 Msa0120500:intron 40.0%
!! GGTAGTCTACTAGTCTTAGA+TGG + chr1_3:45431048-45431067 Msa0120500:intron 40.0%
CTCCTACTAATGCTTCTAGT+GGG - chr1_3:45431094-45431113 None:intergenic 40.0%
TCTCCTACTAATGCTTCTAG+TGG - chr1_3:45431095-45431114 None:intergenic 40.0%
!! ACTAGAAGCATTAGTAGGAG+AGG + chr1_3:45431094-45431113 Msa0120500:intron 40.0%
TGACCTCATGTAGTTGGAAA+AGG + chr1_3:45431262-45431281 Msa0120500:intron 40.0%
! AAGCCTTTTCCAACTACATG+AGG - chr1_3:45431268-45431287 None:intergenic 40.0%
GTTGGAAAAGGCTTAGTTGT+TGG + chr1_3:45431274-45431293 Msa0120500:intron 40.0%
GAAAAGGCTTAGTTGTTGGT+TGG + chr1_3:45431278-45431297 Msa0120500:intron 40.0%
TTATCTAGTTGGGGTTGCTA+AGG + chr1_3:45431623-45431642 Msa0120500:intron 40.0%
! AAGCCTATACTTTGTTTCGG+TGG + chr1_3:45431730-45431749 Msa0120500:CDS 40.0%
! AGCCTATACTTTGTTTCGGT+GGG + chr1_3:45431731-45431750 Msa0120500:CDS 40.0%
!!! TTTTTGGAATGGAGAGACCA+AGG - chr1_3:45432052-45432071 None:intergenic 40.0%
TAACTATTCAGGGGTTATGG+GGG - chr1_3:45432095-45432114 None:intergenic 40.0%
GTAACTATTCAGGGGTTATG+GGG - chr1_3:45432096-45432115 None:intergenic 40.0%
GGTAACTATTCAGGGGTTAT+GGG - chr1_3:45432097-45432116 None:intergenic 40.0%
GGAAAGGGGAAAGTGATTAT+TGG - chr1_3:45432119-45432138 None:intergenic 40.0%
! CAGCTATGTTGTTTGCCTTT+AGG - chr1_3:45432156-45432175 None:intergenic 40.0%
CGTTCCCTCATCAAATTCAT+TGG + chr1_3:45432368-45432387 Msa0120500:intron 40.0%
GCATCATTTGTGTTCAGACA+TGG + chr1_3:45432592-45432611 Msa0120500:intron 40.0%
AAAGGTAAGAGGATCGTCAA+AGG - chr1_3:45432750-45432769 None:intergenic 40.0%
! ACATGAAGGCCTCAAGTTTT+GGG + chr1_3:45432848-45432867 Msa0120500:CDS 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_3:45432960-45432979 None:intergenic 40.0%
GAATCATATCTATCCAGTGC+GGG + chr1_3:45433023-45433042 Msa0120500:intron 40.0%
! GGTTGTTAGCAAGGGTTTTT+GGG - chr1_3:45433530-45433549 None:intergenic 40.0%
! TGGTTGTTAGCAAGGGTTTT+TGG - chr1_3:45433531-45433550 None:intergenic 40.0%
!! CAACAAGTTGGTTGTTAGCA+AGG - chr1_3:45433539-45433558 None:intergenic 40.0%
CTTGCTAACAACCAACTTGT+TGG + chr1_3:45433537-45433556 Msa0120500:intron 40.0%
CTGAATGTAGATCCAGAATG+TGG + chr1_3:45433596-45433615 Msa0120500:intron 40.0%
TTGCCATCTCTTCATTCACT+TGG + chr1_3:45433629-45433648 Msa0120500:intron 40.0%
GTTCCAAGTGAATGAAGAGA+TGG - chr1_3:45433635-45433654 None:intergenic 40.0%
! CTCTGAGTTCTGACAACATT+TGG + chr1_3:45433777-45433796 Msa0120500:intron 40.0%
TGCTAGGGAAAAGTAGTAGT+AGG + chr1_3:45433989-45434008 Msa0120500:intron 40.0%
AAGTCAAGTTTACCAGCTCA+AGG - chr1_3:45434135-45434154 None:intergenic 40.0%
ATTTGTACCTTCAGCCTTAG+AGG + chr1_3:45434363-45434382 Msa0120500:intron 40.0%
! TCCAATGGTTTGCATCATGA+TGG + chr1_3:45434400-45434419 Msa0120500:intron 40.0%
TCCATCATGATGCAAACCAT+TGG - chr1_3:45434404-45434423 None:intergenic 40.0%
! AAATGATTCTCTGGGAAGGT+TGG - chr1_3:45434467-45434486 None:intergenic 40.0%
! CTGTAAATGATTCTCTGGGA+AGG - chr1_3:45434471-45434490 None:intergenic 40.0%
CCAGACTGTAAATGATTCTC+TGG - chr1_3:45434476-45434495 None:intergenic 40.0%
CCAGAGAATCATTTACAGTC+TGG + chr1_3:45434473-45434492 Msa0120500:CDS 40.0%
CTTTCCAGTGTATATCGTTC+CGG - chr1_3:45434678-45434697 None:intergenic 40.0%
ACACTGGAAAGAAACAACCT+TGG + chr1_3:45434687-45434706 Msa0120500:CDS 40.0%
AAGAAACAACCTTGGTTGCA+TGG + chr1_3:45434695-45434714 Msa0120500:CDS 40.0%
TGACACTTGAACACTCCAAA+TGG - chr1_3:45434741-45434760 None:intergenic 40.0%
CCGAAAACAGTACCTGTTAT+CGG - chr1_3:45434764-45434783 None:intergenic 40.0%
!! CCGATAACAGGTACTGTTTT+CGG + chr1_3:45434761-45434780 Msa0120500:CDS 40.0%
TGCCTTGGTATGAATTTGAG+AGG + chr1_3:45435352-45435371 Msa0120500:intron 40.0%
GTCCTCTCAAATTCATACCA+AGG - chr1_3:45435357-45435376 None:intergenic 40.0%
!! TTTATTCTGGGATGGATTGG+TGG - chr1_3:45435461-45435480 None:intergenic 40.0%
CGACTTCCATTCTTTCTATG+TGG + chr1_3:45435556-45435575 Msa0120500:CDS 40.0%
CTCTTTCTTGCAGCTTCAAT+GGG - chr1_3:45435642-45435661 None:intergenic 40.0%
TTTGTTGCAGCTCTTTGTGA+TGG + chr1_3:45435836-45435855 Msa0120500:intron 40.0%
!! ACAGCTCAGTTTTGGTCTTT+TGG - chr1_3:45435918-45435937 None:intergenic 40.0%
! TTTCTGCTACAGCTCAGTTT+TGG - chr1_3:45435926-45435945 None:intergenic 40.0%
! GGCTTTTCATTATCAACTCC+GGG - chr1_3:45436007-45436026 None:intergenic 40.0%
! CGGCTTTTCATTATCAACTC+CGG - chr1_3:45436008-45436027 None:intergenic 40.0%
!! CGGAGTTGATAATGAAAAGC+CGG + chr1_3:45436006-45436025 Msa0120500:CDS 40.0%
GATAATGAAAAGCCGGATTC+TGG + chr1_3:45436013-45436032 Msa0120500:CDS 40.0%
ATCTTAGGAGGAAAGACTTC+GGG - chr1_3:45436046-45436065 None:intergenic 40.0%
CATCTTAGGAGGAAAGACTT+CGG - chr1_3:45436047-45436066 None:intergenic 40.0%
TTATGCAATGCTGCCATCTT+AGG - chr1_3:45436061-45436080 None:intergenic 40.0%
CAGCATTGCATAAAGTGAGA+TGG + chr1_3:45436068-45436087 Msa0120500:CDS 40.0%
TTAACAAGGGTAGTGAGAGA+TGG + chr1_3:45436095-45436114 Msa0120500:CDS 40.0%
!! TAATGGACTTGTACGTTGTC+AGG + chr1_3:45436135-45436154 Msa0120500:CDS 40.0%
TGCCCTTTACTTTACCTAGG+TGG - chr1_3:45424366-45424385 None:intergenic 45.0%
!!! AACAGGGTTTTAGCTTGTCC+AGG + chr1_3:45424428-45424447 Msa0120500:five_prime_UTR 45.0%
!!! ACAGGGTTTTAGCTTGTCCA+GGG + chr1_3:45424429-45424448 Msa0120500:five_prime_UTR 45.0%
TGCTGATGATTCTGCTACAG+CGG + chr1_3:45424620-45424639 Msa0120500:CDS 45.0%
TTCCTCACAGAGTTTGGCAA+TGG - chr1_3:45424745-45424764 None:intergenic 45.0%
! AGGCAGTGCTAGTCTATGTA+AGG + chr1_3:45425068-45425087 Msa0120500:intron 45.0%
TTGAAGAGGGAAGGGAAAGT+TGG + chr1_3:45425188-45425207 Msa0120500:intron 45.0%
ACAGTGGCAGATGAAAACTG+AGG - chr1_3:45425479-45425498 None:intergenic 45.0%
TTCATCTGCCACTGTTCCTA+AGG + chr1_3:45425484-45425503 Msa0120500:CDS 45.0%
GACTTGTACCTTAGGAACAG+TGG - chr1_3:45425495-45425514 None:intergenic 45.0%
ATGCAAAAGGAGGAGCAACT+TGG + chr1_3:45425635-45425654 Msa0120500:CDS 45.0%
TGCAAAAGGAGGAGCAACTT+GGG + chr1_3:45425636-45425655 Msa0120500:CDS 45.0%
! ATTGGTGTCCTAGGATGCAT+GGG + chr1_3:45425896-45425915 Msa0120500:CDS 45.0%
! GGTAAGGGGCACATAGTATA+TGG + chr1_3:45426135-45426154 Msa0120500:intron 45.0%
TTCAAGTGGGTGAGATGCAA+AGG + chr1_3:45426401-45426420 Msa0120500:intron 45.0%
TCAAGTGGGTGAGATGCAAA+GGG + chr1_3:45426402-45426421 Msa0120500:intron 45.0%
TGGAAAAACACTGCCTTAGG+TGG + chr1_3:45426553-45426572 Msa0120500:intron 45.0%
AAACACTGCCTTAGGTGGTT+TGG + chr1_3:45426558-45426577 Msa0120500:intron 45.0%
AACACTGCCTTAGGTGGTTT+GGG + chr1_3:45426559-45426578 Msa0120500:intron 45.0%
ATACATGCCCAAACCACCTA+AGG - chr1_3:45426569-45426588 None:intergenic 45.0%
! TGGTTTGGGCATGTATTGAG+AGG + chr1_3:45426573-45426592 Msa0120500:intron 45.0%
AGTATACCGGGGAACAATTG+CGG + chr1_3:45426796-45426815 Msa0120500:intron 45.0%
GCTATACCACTATAACGTGG+TGG - chr1_3:45426834-45426853 None:intergenic 45.0%
TGCTATTATCCCCTGTGATG+TGG + chr1_3:45426865-45426884 Msa0120500:intron 45.0%
GCTATTATCCCCTGTGATGT+GGG + chr1_3:45426866-45426885 Msa0120500:intron 45.0%
AGGAATTACCCACATCACAG+GGG - chr1_3:45426877-45426896 None:intergenic 45.0%
ATGCCAAATGTCAGATGCCA+TGG + chr1_3:45426973-45426992 Msa0120500:intron 45.0%
AGTCCATGGCATCTGACATT+TGG - chr1_3:45426979-45426998 None:intergenic 45.0%
AATGTCAGATGCCATGGACT+CGG + chr1_3:45426979-45426998 Msa0120500:intron 45.0%
TAGCTATTAGACCGAGTCCA+TGG - chr1_3:45426993-45427012 None:intergenic 45.0%
AAGGATTTAGGTAAGCCAGG+TGG - chr1_3:45427036-45427055 None:intergenic 45.0%
AAAATGGGTGCCTCACTTAC+TGG + chr1_3:45427383-45427402 Msa0120500:CDS 45.0%
TTCTTTCTAGGCCTTCCTCT+AGG - chr1_3:45427545-45427564 None:intergenic 45.0%
! GCATCTGGTAGTGTCTCAAA+TGG + chr1_3:45427683-45427702 Msa0120500:CDS 45.0%
TGATGTTCATCAGAACTGCC+AGG - chr1_3:45427890-45427909 None:intergenic 45.0%
TGTATTCGCAGCAGCTTTCT+TGG - chr1_3:45427948-45427967 None:intergenic 45.0%
GAAAGCTGCTGCGAATACAA+AGG + chr1_3:45427949-45427968 Msa0120500:CDS 45.0%
GAAAGCTGCTCCGAATACAA+AGG + chr1_3:45427985-45428004 Msa0120500:CDS 45.0%
GTATGCAGAAGCAGCTTTCT+TGG - chr1_3:45428020-45428039 None:intergenic 45.0%
GTTGTAGCCCAGATACAAGT+AGG + chr1_3:45428095-45428114 Msa0120500:CDS 45.0%
GAGGCAAATCATCAACCACA+TGG + chr1_3:45428142-45428161 Msa0120500:CDS 45.0%
GATGCTTGAGGTTCCAATAC+AGG - chr1_3:45428172-45428191 None:intergenic 45.0%
ATGGGACAAGTAGATGCTTG+AGG - chr1_3:45428184-45428203 None:intergenic 45.0%
GTGTCATGCCTAGCTCATAA+TGG + chr1_3:45428232-45428251 Msa0120500:CDS 45.0%
CCACCTTTCCATTATGAGCT+AGG - chr1_3:45428243-45428262 None:intergenic 45.0%
! CCTAGCTCATAATGGAAAGG+TGG + chr1_3:45428240-45428259 Msa0120500:CDS 45.0%
! CTCATAATGGAAAGGTGGCA+TGG + chr1_3:45428245-45428264 Msa0120500:CDS 45.0%
!! TTCCTCATGCAAGCATCGAA+TGG + chr1_3:45428300-45428319 Msa0120500:CDS 45.0%
!! TCCTCATGCAAGCATCGAAT+GGG + chr1_3:45428301-45428320 Msa0120500:CDS 45.0%
! GGCTATCTTGCTGTCTTGTT+GGG + chr1_3:45428322-45428341 Msa0120500:CDS 45.0%
TGCCGTTGAAATGGTTGCAA+TGG + chr1_3:45428981-45429000 Msa0120500:intron 45.0%
! GTCGTTTGAGGTACCATTGT+GGG - chr1_3:45429173-45429192 None:intergenic 45.0%
! TGTCGTTTGAGGTACCATTG+TGG - chr1_3:45429174-45429193 None:intergenic 45.0%
AGAAGCTAGCTATTAGTGGG+GGG + chr1_3:45429358-45429377 Msa0120500:intron 45.0%
ATGGGGACTTGGAGATTATG+GGG - chr1_3:45429445-45429464 None:intergenic 45.0%
GATGGGGACTTGGAGATTAT+GGG - chr1_3:45429446-45429465 None:intergenic 45.0%
TGATGGGGACTTGGAGATTA+TGG - chr1_3:45429447-45429466 None:intergenic 45.0%
TCAATGGCAGTGCTATGATG+GGG - chr1_3:45429462-45429481 None:intergenic 45.0%
TTGTATCAATTGCAGGTGGG+AGG + chr1_3:45429611-45429630 Msa0120500:intron 45.0%
TAAACTGCTCTCAGTGCATG+AGG - chr1_3:45429645-45429664 None:intergenic 45.0%
GAGAGCAGTTTATACGCAGA+AGG + chr1_3:45429653-45429672 Msa0120500:CDS 45.0%
AGCAGTTTATACGCAGAAGG+AGG + chr1_3:45429656-45429675 Msa0120500:CDS 45.0%
GCAGTTTATACGCAGAAGGA+GGG + chr1_3:45429657-45429676 Msa0120500:CDS 45.0%
! CCATAGTGGGGTTAAGGAAA+GGG + chr1_3:45429838-45429857 Msa0120500:intron 45.0%
GGAAAGGGTTGGATCCATTA+CGG + chr1_3:45429853-45429872 Msa0120500:intron 45.0%
GAAAGGGTTGGATCCATTAC+GGG + chr1_3:45429854-45429873 Msa0120500:intron 45.0%
GAAGGAACCTCTCAATGCAT+TGG - chr1_3:45429969-45429988 None:intergenic 45.0%
TGGAATAGAGGAGCAACACT+AGG + chr1_3:45430581-45430600 Msa0120500:intron 45.0%
AGTGGTCTAAGGGAGCTATA+GGG + chr1_3:45430828-45430847 Msa0120500:intron 45.0%
! TTAGATGGTTTGGGCATGTG+AGG + chr1_3:45431063-45431082 Msa0120500:intron 45.0%
!! AGCCCACTAGAAGCATTAGT+AGG + chr1_3:45431089-45431108 Msa0120500:intron 45.0%
CATTAGTAGGAGAGGTTGAC+TGG + chr1_3:45431102-45431121 Msa0120500:intron 45.0%
GGAGACAGCTTAAGAGACAA+TGG + chr1_3:45431128-45431147 Msa0120500:intron 45.0%
TGACGCCATAATATGCTGTC+AGG - chr1_3:45431227-45431246 None:intergenic 45.0%
ACTACATGAGGTCAGCTACA+TGG - chr1_3:45431256-45431275 None:intergenic 45.0%
TGTAGCTGACCTCATGTAGT+TGG + chr1_3:45431256-45431275 Msa0120500:intron 45.0%
TAGTTGGGGTTGCTAAGGAA+GGG + chr1_3:45431628-45431647 Msa0120500:intron 45.0%
! GCCTATACTTTGTTTCGGTG+GGG + chr1_3:45431732-45431751 Msa0120500:CDS 45.0%
TCCCCACCGAAACAAAGTAT+AGG - chr1_3:45431736-45431755 None:intergenic 45.0%
! GCCCATGCAACAGTTCTAAT+AGG - chr1_3:45431766-45431785 None:intergenic 45.0%
! TTGCATGGGCTCCTTTTGAA+GGG + chr1_3:45431776-45431795 Msa0120500:CDS 45.0%
!! CATCAGTCTTTTGGCTGAGA+AGG - chr1_3:45431817-45431836 None:intergenic 45.0%
AACTATTCAGGGGTTATGGG+GGG - chr1_3:45432094-45432113 None:intergenic 45.0%
GGGTAACTATTCAGGGGTTA+TGG - chr1_3:45432098-45432117 None:intergenic 45.0%
! GTGTTCAGACATGGTTTGCA+AGG + chr1_3:45432601-45432620 Msa0120500:intron 45.0%
ATAGTAACCGCAGGACATGA+AGG + chr1_3:45432834-45432853 Msa0120500:CDS 45.0%
! GACATGAAGGCCTCAAGTTT+TGG + chr1_3:45432847-45432866 Msa0120500:CDS 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_3:45432970-45432989 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_3:45432967-45432986 Msa0120500:intron 45.0%
!! CTAACAACCAACTTGTTGGG+TGG + chr1_3:45433541-45433560 Msa0120500:intron 45.0%
! GCACAGCATACCAATTTTGC+TGG - chr1_3:45433568-45433587 None:intergenic 45.0%
TGAAGAGATGGCAAGAGTGA+GGG - chr1_3:45433623-45433642 None:intergenic 45.0%
ATGAAGAGATGGCAAGAGTG+AGG - chr1_3:45433624-45433643 None:intergenic 45.0%
!!! TGTTGGGTTGGGTTTTTAGC+TGG - chr1_3:45433657-45433676 None:intergenic 45.0%
! TGTCAGAACTCAGAGCATTC+AGG - chr1_3:45433772-45433791 None:intergenic 45.0%
GTTTACCAGCTCAAGGTTCA+TGG - chr1_3:45434128-45434147 None:intergenic 45.0%
!! TTAACAGCCTCTAAGGCTGA+AGG - chr1_3:45434373-45434392 None:intergenic 45.0%
GTAATCCATTTCGTCCTCTG+AGG + chr1_3:45434436-45434455 Msa0120500:intron 45.0%
! GAAAACCATTAGCTTGGCGA+AGG + chr1_3:45434631-45434650 Msa0120500:CDS 45.0%
TGTATATCGTTCCGGTGACA+GGG - chr1_3:45434670-45434689 None:intergenic 45.0%
TACGTAGTACCATGCAACCA+AGG - chr1_3:45434707-45434726 None:intergenic 45.0%
GTTCAAGTGTCACCGATAAC+AGG + chr1_3:45434749-45434768 Msa0120500:CDS 45.0%
TCAGGCATGGTTGCATATTG+TGG + chr1_3:45435030-45435049 Msa0120500:intron 45.0%
GTTGCATATTGTGGTGCAGA+TGG + chr1_3:45435039-45435058 Msa0120500:CDS 45.0%
TTCTAATACCACGCCAGAAG+AGG - chr1_3:45435128-45435147 None:intergenic 45.0%
ATGTGGATCAGTGACTGAAG+AGG + chr1_3:45435573-45435592 Msa0120500:CDS 45.0%
GGGAAAGGAGAGTTTGATAC+TGG - chr1_3:45435622-45435641 None:intergenic 45.0%
TCTTGCAGCTTCAATGGGAA+AGG - chr1_3:45435637-45435656 None:intergenic 45.0%
CCTCTTTCTTGCAGCTTCAA+TGG - chr1_3:45435643-45435662 None:intergenic 45.0%
CCATTGAAGCTGCAAGAAAG+AGG + chr1_3:45435640-45435659 Msa0120500:CDS 45.0%
! GGGTTTGGAATCTGTATCTG+AGG + chr1_3:45435868-45435887 Msa0120500:CDS 45.0%
!! CTGAGGAAGCATTGTCTTCT+CGG + chr1_3:45435885-45435904 Msa0120500:CDS 45.0%
!! TGAGGAAGCATTGTCTTCTC+GGG + chr1_3:45435886-45435905 Msa0120500:CDS 45.0%
ACAGCTCTTGCTTGTAGAGA+TGG + chr1_3:45435965-45435984 Msa0120500:CDS 45.0%
!! TCAACTCCGGGAGTATTTGT+CGG - chr1_3:45435995-45436014 None:intergenic 45.0%
CGAAGTCTTTCCTCCTAAGA+TGG + chr1_3:45436045-45436064 Msa0120500:CDS 45.0%
AGTGAGAGATGGTTGTGCTT+TGG + chr1_3:45436106-45436125 Msa0120500:CDS 45.0%
GTGAGAGATGGTTGTGCTTT+GGG + chr1_3:45436107-45436126 Msa0120500:CDS 45.0%
TGAGAGATGGTTGTGCTTTG+GGG + chr1_3:45436108-45436127 Msa0120500:CDS 45.0%
!!! TTTTAAATATGAATATATTT+TGG - chr1_3:45431937-45431956 None:intergenic 5.0%
!! AAATATATTCATATTTAAAA+AGG + chr1_3:45431937-45431956 Msa0120500:intron 5.0%
!! AATATATTCATATTTAAAAA+GGG + chr1_3:45431938-45431957 Msa0120500:intron 5.0%
GCTACAGCGGCAAATGATGA+AGG + chr1_3:45424633-45424652 Msa0120500:CDS 50.0%
ACAGCGGCAAATGATGAAGG+TGG + chr1_3:45424636-45424655 Msa0120500:CDS 50.0%
! GCAAATGATGAAGGTGGTGG+TGG + chr1_3:45424642-45424661 Msa0120500:CDS 50.0%
CACCATTGCCAAACTCTGTG+AGG + chr1_3:45424740-45424759 Msa0120500:CDS 50.0%
CTATAACTTCATGCCTGGCG+AGG - chr1_3:45425517-45425536 None:intergenic 50.0%
GCAAAAGGAGGAGCAACTTG+GGG + chr1_3:45425637-45425656 Msa0120500:CDS 50.0%
! GGGCATTAGATTGGTGTCCT+AGG + chr1_3:45425887-45425906 Msa0120500:CDS 50.0%
! GATTGGTGTCCTAGGATGCA+TGG + chr1_3:45425895-45425914 Msa0120500:CDS 50.0%
! TTGGTGTCCTAGGATGCATG+GGG + chr1_3:45425897-45425916 Msa0120500:CDS 50.0%
CAAGTGGGTGAGATGCAAAG+GGG + chr1_3:45426403-45426422 Msa0120500:intron 50.0%
GACAAACCGCAATTGTTCCC+CGG - chr1_3:45426805-45426824 None:intergenic 50.0%
ATCATATCTCCCCGGGAAGA+AGG + chr1_3:45427463-45427482 Msa0120500:CDS 50.0%
GGGACCAAGTACATAGCATC+TGG + chr1_3:45427668-45427687 Msa0120500:CDS 50.0%
GAACTGCCAGGAACTACATC+TGG - chr1_3:45427878-45427897 None:intergenic 50.0%
ACCACATGGTAGCCCTGTAT+TGG + chr1_3:45428156-45428175 Msa0120500:CDS 50.0%
TCCAATACAGGGCTACCATG+TGG - chr1_3:45428160-45428179 None:intergenic 50.0%
GCTAGGCATGACACAACTCT+AGG - chr1_3:45428226-45428245 None:intergenic 50.0%
AGGTGGCATGGGATGTCAAA+TGG + chr1_3:45428257-45428276 Msa0120500:CDS 50.0%
TGGCATGGGATGTCAAATGG+AGG + chr1_3:45428260-45428279 Msa0120500:CDS 50.0%
! GGGCTATCTTGCTGTCTTGT+TGG + chr1_3:45428321-45428340 Msa0120500:CDS 50.0%
! CTTGCTGTCTTGTTGGGCAA+TGG + chr1_3:45428328-45428347 Msa0120500:CDS 50.0%
CTTGTTGGGCAATGGATCTC+TGG + chr1_3:45428336-45428355 Msa0120500:CDS 50.0%
! GAGGTACCATTGTGGGTTAC+TGG - chr1_3:45429166-45429185 None:intergenic 50.0%
! GGAGGGTTTCCAAAGTGCTT+GGG - chr1_3:45429335-45429354 None:intergenic 50.0%
! AGGAGGGTTTCCAAAGTGCT+TGG - chr1_3:45429336-45429355 None:intergenic 50.0%
! AGTGGAGCACTTAAGCAGCT+TGG - chr1_3:45429388-45429407 None:intergenic 50.0%
! TTGGAGATTATGGGGTGCCT+AGG - chr1_3:45429437-45429456 None:intergenic 50.0%
TGAAACGTGGCAGCTTACAG+AGG + chr1_3:45429730-45429749 Msa0120500:CDS 50.0%
ACATAGAGCTGCTGCCATAG+TGG + chr1_3:45429824-45429843 Msa0120500:intron 50.0%
CATAGAGCTGCTGCCATAGT+GGG + chr1_3:45429825-45429844 Msa0120500:intron 50.0%
ATAGAGCTGCTGCCATAGTG+GGG + chr1_3:45429826-45429845 Msa0120500:intron 50.0%
! GCCATAGTGGGGTTAAGGAA+AGG + chr1_3:45429837-45429856 Msa0120500:intron 50.0%
CCCTTTCCTTAACCCCACTA+TGG - chr1_3:45429841-45429860 None:intergenic 50.0%
AGTGGGGTTAAGGAAAGGGT+TGG + chr1_3:45429842-45429861 Msa0120500:intron 50.0%
GTCGTGTAACTGGAGATCAC+AGG - chr1_3:45429935-45429954 None:intergenic 50.0%
GGAATATGCGGTCGTGTAAC+TGG - chr1_3:45429945-45429964 None:intergenic 50.0%
GGAACCTCTCAATGCATTGG+TGG - chr1_3:45429966-45429985 None:intergenic 50.0%
TCACAGCATTCCACTGACAG+TGG + chr1_3:45430424-45430443 Msa0120500:intron 50.0%
! TTACTTGCTGGCTGCCATGA+TGG + chr1_3:45430476-45430495 Msa0120500:CDS 50.0%
TATCTGTGTAGGGCAACCAG+TGG + chr1_3:45430669-45430688 Msa0120500:intron 50.0%
ATCTGTGTAGGGCAACCAGT+GGG + chr1_3:45430670-45430689 Msa0120500:intron 50.0%
GAGTGGTCTAAGGGAGCTAT+AGG + chr1_3:45430827-45430846 Msa0120500:intron 50.0%
TCTAAGGGAGCTATAGGGTG+AGG + chr1_3:45430833-45430852 Msa0120500:intron 50.0%
GGTGATGAGGGAAAACGTCA+TGG + chr1_3:45430866-45430885 Msa0120500:intron 50.0%
AGTAGGAGAGGTTGACTGGA+TGG + chr1_3:45431106-45431125 Msa0120500:intron 50.0%
GTAGGAGAGGTTGACTGGAT+GGG + chr1_3:45431107-45431126 Msa0120500:intron 50.0%
CTAGTTGGGGTTGCTAAGGA+AGG + chr1_3:45431627-45431646 Msa0120500:intron 50.0%
! GTTGCATGGGCTCCTTTTGA+AGG + chr1_3:45431775-45431794 Msa0120500:CDS 50.0%
ACTATTCAGGGGTTATGGGG+GGG - chr1_3:45432093-45432112 None:intergenic 50.0%
!!! GCGCGCTTTTGAAATCACTG+TGG + chr1_3:45432488-45432507 Msa0120500:intron 50.0%
!!! GCCTCAAGTTTTGGGACCTA+CGG + chr1_3:45432856-45432875 Msa0120500:CDS 50.0%
ACCGTAGGTCCCAAAACTTG+AGG - chr1_3:45432860-45432879 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_3:45432972-45432991 Msa0120500:intron 50.0%
GCAATCCTCACCTTACAAGC+CGG - chr1_3:45432980-45432999 None:intergenic 50.0%
GAAAAACTCAAGTCCCGCAC+TGG - chr1_3:45433039-45433058 None:intergenic 50.0%
GTTGGGTGGACCAGCAAAAT+TGG + chr1_3:45433555-45433574 Msa0120500:intron 50.0%
AAGAGTGAGGGTCCACATTC+TGG - chr1_3:45433611-45433630 None:intergenic 50.0%
TCTCTCCATGAACCTTGAGC+TGG + chr1_3:45434120-45434139 Msa0120500:intron 50.0%
AGCATTGCGAACGAGTCAAC+TGG + chr1_3:45434241-45434260 Msa0120500:intron 50.0%
AGAAGCCTCAGAGGACGAAA+TGG - chr1_3:45434444-45434463 None:intergenic 50.0%
!! TGGATTGGCAGTCAAAGCCA+AGG + chr1_3:45434493-45434512 Msa0120500:CDS 50.0%
GCAAATGATCTCCCTGTCAC+CGG + chr1_3:45434656-45434675 Msa0120500:CDS 50.0%
GTGTATATCGTTCCGGTGAC+AGG - chr1_3:45434671-45434690 None:intergenic 50.0%
GTCACCGGAACGATATACAC+TGG + chr1_3:45434671-45434690 Msa0120500:CDS 50.0%
GCAATTACCAGCACCTCTTC+TGG + chr1_3:45435112-45435131 Msa0120500:intron 50.0%
! GAGACGTGGATCTTTTGCCT+TGG + chr1_3:45435337-45435356 Msa0120500:intron 50.0%
TGCAATGCTGCCATCTTAGG+AGG - chr1_3:45436058-45436077 None:intergenic 50.0%
GAGAGATGGTTGTGCTTTGG+GGG + chr1_3:45436109-45436128 Msa0120500:CDS 50.0%
!! TTGTGCTTTGGGGGAGCTAA+TGG + chr1_3:45436118-45436137 Msa0120500:CDS 50.0%
GCGGCAAATGATGAAGGTGG+TGG + chr1_3:45424639-45424658 Msa0120500:CDS 55.0%
! CTTAGGGTTAGCACCACTGC+TGG - chr1_3:45424673-45424692 None:intergenic 55.0%
! CAGCAGTGGTGCTAACCCTA+AGG + chr1_3:45424671-45424690 Msa0120500:CDS 55.0%
CTGGCGAGGACTTGTACCTT+AGG - chr1_3:45425503-45425522 None:intergenic 55.0%
CTAAGGTACAAGTCCTCGCC+AGG + chr1_3:45425501-45425520 Msa0120500:intron 55.0%
!! GCAGAGGTGCCGTGCAAATA+TGG + chr1_3:45427405-45427424 Msa0120500:CDS 55.0%
GCCCATTCGATGCTTGCATG+AGG - chr1_3:45428305-45428324 None:intergenic 55.0%
TTGTAGGTGGGGGAGGAAAG+GGG - chr1_3:45429299-45429318 None:intergenic 55.0%
GTTGTAGGTGGGGGAGGAAA+GGG - chr1_3:45429300-45429319 None:intergenic 55.0%
AGTTGTAGGTGGGGGAGGAA+AGG - chr1_3:45429301-45429320 None:intergenic 55.0%
TCAGTAGTTGTAGGTGGGGG+AGG - chr1_3:45429306-45429325 None:intergenic 55.0%
! GCAGTGCTATGATGGGGACT+TGG - chr1_3:45429456-45429475 None:intergenic 55.0%
GCTCTCAGTGCATGAGGAAG+AGG - chr1_3:45429639-45429658 None:intergenic 55.0%
! CTGCTGCCATAGTGGGGTTA+AGG + chr1_3:45429832-45429851 Msa0120500:intron 55.0%
GCATTCCACTGACAGTGGAG+TGG + chr1_3:45430429-45430448 Msa0120500:intron 55.0%
ACTGACCACTCCACTGTCAG+TGG - chr1_3:45430437-45430456 None:intergenic 55.0%
! TGCTGGCTGCCATGATGGAA+CGG + chr1_3:45430481-45430500 Msa0120500:CDS 55.0%
CTAAGGAAGGGAGCTGTGCT+GGG + chr1_3:45431640-45431659 Msa0120500:intron 55.0%
CTTGAGGCCTTCATGTCCTG+CGG - chr1_3:45432844-45432863 None:intergenic 55.0%
TGCTGGTCCACCCAACAAGT+TGG - chr1_3:45433551-45433570 None:intergenic 55.0%
GAAGGTTGGAGAAGCCTCAG+AGG - chr1_3:45434453-45434472 None:intergenic 55.0%
TGCAGCCTTCGCCAAGCTAA+TGG - chr1_3:45434639-45434658 None:intergenic 55.0%
!!! TGGTGCTGCTGTCCGTTTTC+AGG + chr1_3:45435059-45435078 Msa0120500:CDS 55.0%
GCAAGAGCTGTGCTTTCAGC+TGG - chr1_3:45435956-45435975 None:intergenic 55.0%
! GGTGCACCGACAAATACTCC+CGG + chr1_3:45435986-45436005 Msa0120500:CDS 55.0%
TCGGGAGTAGTCCCAGAATC+CGG - chr1_3:45436028-45436047 None:intergenic 55.0%
! GGTGGTGGTAGTACCAGCAG+TGG + chr1_3:45424657-45424676 Msa0120500:CDS 60.0%
TCAGGCTCCCCATGCATCCT+AGG - chr1_3:45425907-45425926 None:intergenic 60.0%
GGTGCCTCACTTACTGGCAG+AGG + chr1_3:45427389-45427408 Msa0120500:CDS 60.0%
GGCACCTCTGCCAGTAAGTG+AGG - chr1_3:45427396-45427415 None:intergenic 60.0%
GCTAAGGAAGGGAGCTGTGC+TGG + chr1_3:45431639-45431658 Msa0120500:intron 60.0%
TACCAGCACCTCTTCTGGCG+TGG + chr1_3:45435117-45435136 Msa0120500:intron 60.0%
! TACCACGCCAGAAGAGGTGC+TGG - chr1_3:45435122-45435141 None:intergenic 60.0%
GCTGTTGCTGCTCATCCGCC+TGG + chr1_3:45427347-45427366 Msa0120500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45424331 45436365 45424331 ID=Msa0120500;Name=Msa0120500
chr1_3 mRNA 45424331 45436365 45424331 ID=Msa0120500-mRNA-1;Parent=Msa0120500;Name=Msa0120500-mRNA-1;_AED=0.15;_eAED=0.15;_QI=179|0.92|0.86|1|1|1|15|161|972
chr1_3 exon 45424331 45424832 45424331 ID=Msa0120500-mRNA-1:exon:13601;Parent=Msa0120500-mRNA-1
chr1_3 exon 45425370 45425505 45425370 ID=Msa0120500-mRNA-1:exon:13602;Parent=Msa0120500-mRNA-1
chr1_3 exon 45425629 45425681 45425629 ID=Msa0120500-mRNA-1:exon:13603;Parent=Msa0120500-mRNA-1
chr1_3 exon 45425855 45425945 45425855 ID=Msa0120500-mRNA-1:exon:13604;Parent=Msa0120500-mRNA-1
chr1_3 exon 45427341 45428362 45427341 ID=Msa0120500-mRNA-1:exon:13605;Parent=Msa0120500-mRNA-1
chr1_3 exon 45429626 45429751 45429626 ID=Msa0120500-mRNA-1:exon:13606;Parent=Msa0120500-mRNA-1
chr1_3 exon 45430430 45430502 45430430 ID=Msa0120500-mRNA-1:exon:13607;Parent=Msa0120500-mRNA-1
chr1_3 exon 45431544 45431589 45431544 ID=Msa0120500-mRNA-1:exon:13608;Parent=Msa0120500-mRNA-1
chr1_3 exon 45431725 45431797 45431725 ID=Msa0120500-mRNA-1:exon:13609;Parent=Msa0120500-mRNA-1
chr1_3 exon 45432812 45432877 45432812 ID=Msa0120500-mRNA-1:exon:13610;Parent=Msa0120500-mRNA-1
chr1_3 exon 45434437 45434514 45434437 ID=Msa0120500-mRNA-1:exon:13611;Parent=Msa0120500-mRNA-1
chr1_3 exon 45434598 45434782 45434598 ID=Msa0120500-mRNA-1:exon:13612;Parent=Msa0120500-mRNA-1
chr1_3 exon 45435034 45435080 45435034 ID=Msa0120500-mRNA-1:exon:13613;Parent=Msa0120500-mRNA-1
chr1_3 exon 45435517 45435757 45435517 ID=Msa0120500-mRNA-1:exon:13614;Parent=Msa0120500-mRNA-1
chr1_3 exon 45435846 45436365 45435846 ID=Msa0120500-mRNA-1:exon:13615;Parent=Msa0120500-mRNA-1
chr1_3 five_prime_UTR 45424331 45424509 45424331 ID=Msa0120500-mRNA-1:five_prime_utr;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45424510 45424832 45424510 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45425370 45425505 45425370 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45425629 45425681 45425629 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45425855 45425945 45425855 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45427341 45428362 45427341 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45429626 45429751 45429626 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45430430 45430502 45430430 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45431544 45431589 45431544 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45431725 45431797 45431725 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45432812 45432877 45432812 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45434437 45434514 45434437 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45434598 45434782 45434598 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45435034 45435080 45435034 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45435517 45435757 45435517 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 CDS 45435846 45436204 45435846 ID=Msa0120500-mRNA-1:cds;Parent=Msa0120500-mRNA-1
chr1_3 three_prime_UTR 45436205 45436365 45436205 ID=Msa0120500-mRNA-1:three_prime_utr;Parent=Msa0120500-mRNA-1
Gene Sequence

>Msa0120500

ATGGAAGAGGAAAATGAGAACCTAACTATTGCCACACTATTTAATATCAAAGAGAAAAAGAAGAAGAAAAAGAAGAAAAAGACGAAGGCAAATAAAGAGAGCGAAAGAGTTGCTGATGATTCTGCTACAGCGGCAAATGATGAAGGTGGTGGTGGTAGTACCAGCAGTGGTGCTAACCCTAAGGTTTCTTTGTTTGATATCTCTGTCGAGAATTTCTTTGAAGACATGGACACCATTGCCAAACTCTGTGAGGAAGAAGAACGCAACACTGCTGTTGAGCAAAGCGAGATCAAGAGAATGTTTTCTTCCGTCACTTTTTTAAGAGAATGGAAGGATTTTAAATATCCATCTAAAAGCATTAGGTTTACTTACGGAATTGGGAGCTCTGAGTGTTATGAGAGAAATGATATCAAAGATGACATAAACTTACCTCAGTTTTCATCTGCCACTGTTCCTAAGCATAATATGCAAAAGGAGGAGCAACTTGGGGATGCCAAACCTCAAGAATCCAAAGACTTTGTGATGAATGTTGGAGGTTCTGTATGGGCATTAGATTGGTGTCCTAGGATGCATGGGGAGCCTGATTGTTCAGTTAAATGTGAGTTCATTGCTGTTGCTGCTCATCCGCCTGGTTCATCTTATCACAAAATGGGTGCCTCACTTACTGGCAGAGGTGCCGTGCAAATATGGTGTCTTCTAAATATCAGGGAACACAGCGAAGAAGTATCATATCTCCCCGGGAAGAAGGAAAAAAAACCTAAAAAAGACACGTGCACAAATGACAAATCGATAGAAATAAAGAGGCCTAGAGGAAGGCCTAGAAAGAATCCTACTGAAAACAACGAAGCAATATCTCCTATTACAAACAAGAGAAAAAGAGGAAGACCAAAAAAGAATCCAACTGTAATAGCAGTGGATAGTACAAATTGTGGGACCAAGTACATAGCATCTGGTAGTGTCTCAAATGGGAATAATGAAAACAATGAAGAAATACTTCGTATTACATACAAGAGTAAAAAAAGGCCTAAAGGAAGACCGAAAAAGAATTCAATAGATGGAACAGTGAGTGATCCAAATTGTGAGAACCAATTTGTTCCTCTTACTGTTCAACTTCCAGATTCAGCTGAATTTATTTCTCCAGATGTAGTTCCTGGCAGTTCTGATGAACATCATTCACAACAATTTTCTAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTGCGAATACAAAGGGAAAGAATGCTAAGAAAGCTGCTCCGAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTTCTGCATACGATTCAGAAACTCTTGTTGCAAGAAGTAGGTTGGATATTAATCATAGGGAAAGAAGTTGTAGCCCAGATACAAGTAGGCCATTATTGATTCAGTGTGAGAATGAGGCAAATCATCAACCACATGGTAGCCCTGTATTGGAACCTCAAGCATCTACTTGTCCCATTCCACAAAATGTAGCATTGCCTAGAGTTGTGTCATGCCTAGCTCATAATGGAAAGGTGGCATGGGATGTCAAATGGAGGCCTCTTAGCAATCTTGATTCCTCATGCAAGCATCGAATGGGCTATCTTGCTGTCTTGTTGGGCAATGGATCTCTGGAAGTGTGGGAGGTTCCTCTTCCTCATGCACTGAGAGCAGTTTATACGCAGAAGGAGGGCACAGATCCTCGTTTTATAAAATTGGAGCCTGTATTCAAATGCTCAATGTTGAAACGTGGCAGCTTACAGAGCATTCCACTGACAGTGGAGTGGTCAGTTACTCCCCCTCATGATTATTTACTTGCTGGCTGCCATGATGGAACGGTTGCTCTGTGGAAATTCTCTACAAATTCTTCATCTAAATGTGATGATACAAAGCCTATACTTTGTTTCGGTGGGGATACTGTTCCTATTAGAACTGTTGCATGGGCTCCTTTTGAAGGTGATCCAGAGACTTCTAACTTAATAGTAACCGCAGGACATGAAGGCCTCAAGTTTTGGGACCTACGTAATCCATTTCGTCCTCTGAGGCTTCTCCAACCTTCCCAGAGAATCATTTACAGTCTGGATTGGCAGTCAAAGCCAAGCTGTATCATTATGTGTTTTGAGGATGGAACAATGAAAACCATTAGCTTGGCGAAGGCTGCAAATGATCTCCCTGTCACCGGAACGATATACACTGGAAAGAAACAACCTTGGTTGCATGGTACTACGTATTCATCTTATGCCATTTGGAGTGTTCAAGTGTCACCGATAACAGGTACTGTTTTCGGCATGGTTGCATATTGTGGTGCAGATGGTGCTGCTGTCCGTTTTCAGCTAACAACTAAATCAGTGGAGACTGATCATTCGCACAATCGACTTCCATTCTTTCTATGTGGATCAGTGACTGAAGAGGAATCAACTATCATTGTCAACACTCCAGTATCAAACTCTCCTTTCCCATTGAAGCTGCAAGAAAGAGGCAGATATTCAGAATCTTTCCGAGACTTATTATCCAAAAGCAGAATTGCGTTTAATCAAATGATAAAAGCTTCTACTGATGATTGTCAGATTTTAGCTCTTTGTGATGGTGATAATATGGGTTTGGAATCTGTATCTGAGGAAGCATTGTCTTCTCGGGAGCAAACCAAAAGACCAAAACTGAGCTGTAGCAGAAAGAAAAAACCAGCTGAAAGCACAGCTCTTGCTTGTAGAGATGGTGCACCGACAAATACTCCCGGAGTTGATAATGAAAAGCCGGATTCTGGGACTACTCCCGAAGTCTTTCCTCCTAAGATGGCAGCATTGCATAAAGTGAGATGGAACATTAACAAGGGTAGTGAGAGATGGTTGTGCTTTGGGGGAGCTAATGGACTTGTACGTTGTCAGGAAATTGTTTACTCTAATATTGATAAGAAAATGGCCTTGAAGAGATGA
Protein sequence

>Msa0120500

MEEENENLTIATLFNIKEKKKKKKKKKTKANKESERVADDSATAANDEGGGGSTSSGANPKVSLFDISVENFFEDMDTIAKLCEEEERNTAVEQSEIKRMFSSVTFLREWKDFKYPSKSIRFTYGIGSSECYERNDIKDDINLPQFSSATVPKHNMQKEEQLGDAKPQESKDFVMNVGGSVWALDWCPRMHGEPDCSVKCEFIAVAAHPPGSSYHKMGASLTGRGAVQIWCLLNIREHSEEVSYLPGKKEKKPKKDTCTNDKSIEIKRPRGRPRKNPTENNEAISPITNKRKRGRPKKNPTVIAVDSTNCGTKYIASGSVSNGNNENNEEILRITYKSKKRPKGRPKKNSIDGTVSDPNCENQFVPLTVQLPDSAEFISPDVVPGSSDEHHSQQFSNTKGKNAKKAAANTKGKNAKKAAPNTKGKNAKKAASAYDSETLVARSRLDINHRERSCSPDTSRPLLIQCENEANHQPHGSPVLEPQASTCPIPQNVALPRVVSCLAHNGKVAWDVKWRPLSNLDSSCKHRMGYLAVLLGNGSLEVWEVPLPHALRAVYTQKEGTDPRFIKLEPVFKCSMLKRGSLQSIPLTVEWSVTPPHDYLLAGCHDGTVALWKFSTNSSSKCDDTKPILCFGGDTVPIRTVAWAPFEGDPETSNLIVTAGHEGLKFWDLRNPFRPLRLLQPSQRIIYSLDWQSKPSCIIMCFEDGTMKTISLAKAANDLPVTGTIYTGKKQPWLHGTTYSSYAIWSVQVSPITGTVFGMVAYCGADGAAVRFQLTTKSVETDHSHNRLPFFLCGSVTEEESTIIVNTPVSNSPFPLKLQERGRYSESFRDLLSKSRIAFNQMIKASTDDCQILALCDGDNMGLESVSEEALSSREQTKRPKLSCSRKKKPAESTALACRDGAPTNTPGVDNEKPDSGTTPEVFPPKMAALHKVRWNINKGSERWLCFGGANGLVRCQEIVYSNIDKKMALKR*